Multiple sequence alignment - TraesCS5D01G404300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G404300 chr5D 100.000 3443 0 0 1 3443 469500796 469504238 0.000000e+00 6359
1 TraesCS5D01G404300 chr5A 90.438 3127 158 62 1 3096 590539072 590542088 0.000000e+00 3988
2 TraesCS5D01G404300 chr5A 82.677 127 16 6 3311 3436 590558479 590558600 1.310000e-19 108
3 TraesCS5D01G404300 chr5B 91.118 2871 123 49 1 2835 577226261 577229035 0.000000e+00 3768
4 TraesCS5D01G404300 chr5B 84.000 200 27 1 438 637 78209897 78210091 1.630000e-43 187
5 TraesCS5D01G404300 chr5B 84.000 200 27 1 438 637 406551257 406551451 1.630000e-43 187
6 TraesCS5D01G404300 chr5B 79.061 277 22 18 2838 3106 577229078 577229326 1.280000e-34 158
7 TraesCS5D01G404300 chr4A 90.749 1481 133 3 973 2452 576931991 576930514 0.000000e+00 1973
8 TraesCS5D01G404300 chr4A 82.920 1452 236 11 997 2441 547046170 547044724 0.000000e+00 1297
9 TraesCS5D01G404300 chr4A 80.828 1450 272 5 997 2443 486126018 486124572 0.000000e+00 1133
10 TraesCS5D01G404300 chr4A 83.756 197 27 1 438 634 740036316 740036507 7.590000e-42 182
11 TraesCS5D01G404300 chr4D 90.614 1481 135 3 973 2452 26479982 26481459 0.000000e+00 1962
12 TraesCS5D01G404300 chr4D 83.207 1453 227 15 997 2441 50070789 50072232 0.000000e+00 1315
13 TraesCS5D01G404300 chr4B 90.547 1481 136 3 973 2452 39014828 39016305 0.000000e+00 1956
14 TraesCS5D01G404300 chr4B 83.196 1452 229 13 997 2441 73609979 73608536 0.000000e+00 1315
15 TraesCS5D01G404300 chr7A 84.021 194 26 1 444 637 497657906 497657718 7.590000e-42 182
16 TraesCS5D01G404300 chr3A 84.127 189 25 1 449 637 82906786 82906969 9.820000e-41 178
17 TraesCS5D01G404300 chr3B 82.500 200 30 2 438 637 815340931 815341125 1.640000e-38 171
18 TraesCS5D01G404300 chr3B 84.058 138 20 2 438 574 47611509 47611645 7.750000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G404300 chr5D 469500796 469504238 3442 False 6359 6359 100.0000 1 3443 1 chr5D.!!$F1 3442
1 TraesCS5D01G404300 chr5A 590539072 590542088 3016 False 3988 3988 90.4380 1 3096 1 chr5A.!!$F1 3095
2 TraesCS5D01G404300 chr5B 577226261 577229326 3065 False 1963 3768 85.0895 1 3106 2 chr5B.!!$F3 3105
3 TraesCS5D01G404300 chr4A 576930514 576931991 1477 True 1973 1973 90.7490 973 2452 1 chr4A.!!$R3 1479
4 TraesCS5D01G404300 chr4A 547044724 547046170 1446 True 1297 1297 82.9200 997 2441 1 chr4A.!!$R2 1444
5 TraesCS5D01G404300 chr4A 486124572 486126018 1446 True 1133 1133 80.8280 997 2443 1 chr4A.!!$R1 1446
6 TraesCS5D01G404300 chr4D 26479982 26481459 1477 False 1962 1962 90.6140 973 2452 1 chr4D.!!$F1 1479
7 TraesCS5D01G404300 chr4D 50070789 50072232 1443 False 1315 1315 83.2070 997 2441 1 chr4D.!!$F2 1444
8 TraesCS5D01G404300 chr4B 39014828 39016305 1477 False 1956 1956 90.5470 973 2452 1 chr4B.!!$F1 1479
9 TraesCS5D01G404300 chr4B 73608536 73609979 1443 True 1315 1315 83.1960 997 2441 1 chr4B.!!$R1 1444

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.191064 AGAGTGAGGAGGTTGGTGGA 59.809 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 2533 1.077858 CTTCCTTCCCCTGCAGCTC 60.078 63.158 8.66 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.191064 AGAGTGAGGAGGTTGGTGGA 59.809 55.000 0.00 0.00 0.00 4.02
139 144 5.183228 CACACCTACTCAATTTATTCCGGT 58.817 41.667 0.00 0.00 0.00 5.28
264 275 2.093288 CAGCCTCCTCTCTGCATACAAA 60.093 50.000 0.00 0.00 0.00 2.83
305 319 1.003580 TCTGCATCCACCAAGAAGTCC 59.996 52.381 0.00 0.00 0.00 3.85
381 399 1.774110 TCCTGAGATCTGGTGAGAGC 58.226 55.000 0.00 0.00 36.48 4.09
385 403 2.500910 CTGAGATCTGGTGAGAGCCTTT 59.499 50.000 0.00 0.00 34.98 3.11
400 426 2.651841 AGCCTTTTCCCTGATCTCCTTT 59.348 45.455 0.00 0.00 0.00 3.11
409 435 3.010138 CCCTGATCTCCTTTGGTTTGGTA 59.990 47.826 0.00 0.00 0.00 3.25
413 439 6.381498 TGATCTCCTTTGGTTTGGTATGTA 57.619 37.500 0.00 0.00 0.00 2.29
414 440 6.969043 TGATCTCCTTTGGTTTGGTATGTAT 58.031 36.000 0.00 0.00 0.00 2.29
422 448 6.518208 TTGGTTTGGTATGTATAGTTTGGC 57.482 37.500 0.00 0.00 0.00 4.52
479 505 1.740025 GGATGCTGTTCTTTTCTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
498 524 1.742268 GGTTCTCTGAAGATGCTTGCC 59.258 52.381 0.00 0.00 0.00 4.52
571 601 5.484290 AGTTAGTGGTTTGGATAGTAGTGCT 59.516 40.000 0.00 0.00 0.00 4.40
674 704 1.332997 GTCATGCTCCTTGTATGCAGC 59.667 52.381 0.00 0.00 40.18 5.25
724 754 5.961396 ATCCTCAAATTAGATCATGCTGC 57.039 39.130 0.00 0.00 0.00 5.25
745 775 2.569059 GAAGCTGCCAGCATCTGATTA 58.431 47.619 20.53 0.00 45.56 1.75
746 776 1.964552 AGCTGCCAGCATCTGATTAC 58.035 50.000 20.53 0.00 45.56 1.89
748 778 2.092538 AGCTGCCAGCATCTGATTACTT 60.093 45.455 20.53 0.00 45.56 2.24
752 782 5.357742 TGCCAGCATCTGATTACTTAGAA 57.642 39.130 0.00 0.00 32.44 2.10
753 783 5.933617 TGCCAGCATCTGATTACTTAGAAT 58.066 37.500 0.00 0.00 32.44 2.40
755 785 6.830324 TGCCAGCATCTGATTACTTAGAATTT 59.170 34.615 0.00 0.00 32.44 1.82
756 786 7.340232 TGCCAGCATCTGATTACTTAGAATTTT 59.660 33.333 0.00 0.00 32.44 1.82
773 803 5.237779 AGAATTTTTCATGCTTGTTTGCTGG 59.762 36.000 0.00 0.00 0.00 4.85
817 847 8.539770 TTCTTAGAACATTTCTGTAGCTTCAG 57.460 34.615 13.79 13.79 40.94 3.02
822 852 6.071108 AGAACATTTCTGTAGCTTCAGCTCTA 60.071 38.462 15.03 0.00 44.30 2.43
840 874 6.529829 CAGCTCTACATTTCTGTCACTTACTC 59.470 42.308 0.00 0.00 36.79 2.59
842 876 6.529829 GCTCTACATTTCTGTCACTTACTCTG 59.470 42.308 0.00 0.00 36.79 3.35
843 877 7.526142 TCTACATTTCTGTCACTTACTCTGT 57.474 36.000 0.00 0.00 36.79 3.41
844 878 7.952671 TCTACATTTCTGTCACTTACTCTGTT 58.047 34.615 0.00 0.00 36.79 3.16
845 879 8.421784 TCTACATTTCTGTCACTTACTCTGTTT 58.578 33.333 0.00 0.00 36.79 2.83
846 880 7.865706 ACATTTCTGTCACTTACTCTGTTTT 57.134 32.000 0.00 0.00 0.00 2.43
847 881 8.281212 ACATTTCTGTCACTTACTCTGTTTTT 57.719 30.769 0.00 0.00 0.00 1.94
848 882 9.391006 ACATTTCTGTCACTTACTCTGTTTTTA 57.609 29.630 0.00 0.00 0.00 1.52
851 885 9.661563 TTTCTGTCACTTACTCTGTTTTTAAGA 57.338 29.630 0.00 0.00 0.00 2.10
852 886 9.832445 TTCTGTCACTTACTCTGTTTTTAAGAT 57.168 29.630 0.00 0.00 0.00 2.40
853 887 9.477484 TCTGTCACTTACTCTGTTTTTAAGATC 57.523 33.333 0.00 0.00 0.00 2.75
854 888 9.261180 CTGTCACTTACTCTGTTTTTAAGATCA 57.739 33.333 0.00 0.00 0.00 2.92
855 889 9.261180 TGTCACTTACTCTGTTTTTAAGATCAG 57.739 33.333 0.00 0.00 0.00 2.90
856 890 8.224437 GTCACTTACTCTGTTTTTAAGATCAGC 58.776 37.037 0.00 0.00 0.00 4.26
857 891 8.150945 TCACTTACTCTGTTTTTAAGATCAGCT 58.849 33.333 0.00 0.00 0.00 4.24
858 892 8.778358 CACTTACTCTGTTTTTAAGATCAGCTT 58.222 33.333 0.00 0.00 40.68 3.74
859 893 8.994170 ACTTACTCTGTTTTTAAGATCAGCTTC 58.006 33.333 0.00 0.00 38.05 3.86
860 894 8.902540 TTACTCTGTTTTTAAGATCAGCTTCA 57.097 30.769 0.00 0.00 38.05 3.02
861 895 7.807977 ACTCTGTTTTTAAGATCAGCTTCAA 57.192 32.000 0.00 0.00 38.05 2.69
862 896 8.225603 ACTCTGTTTTTAAGATCAGCTTCAAA 57.774 30.769 0.00 0.00 38.05 2.69
863 897 8.686334 ACTCTGTTTTTAAGATCAGCTTCAAAA 58.314 29.630 0.00 0.00 37.35 2.44
864 898 9.520204 CTCTGTTTTTAAGATCAGCTTCAAAAA 57.480 29.630 0.00 0.00 39.84 1.94
902 936 3.193263 TCTGAATCTCGATTGCTTCTGC 58.807 45.455 0.00 0.00 40.20 4.26
907 941 3.592898 TCTCGATTGCTTCTGCTTACA 57.407 42.857 0.00 0.00 40.48 2.41
909 943 3.928992 TCTCGATTGCTTCTGCTTACAAG 59.071 43.478 0.00 0.00 40.48 3.16
910 944 3.925379 TCGATTGCTTCTGCTTACAAGA 58.075 40.909 0.00 0.00 40.48 3.02
936 986 1.355066 GCAGTAAGAGCTGTCGTGCC 61.355 60.000 0.00 0.00 38.65 5.01
944 994 1.008538 GCTGTCGTGCCCTGTTTTG 60.009 57.895 0.00 0.00 0.00 2.44
947 997 1.315981 TGTCGTGCCCTGTTTTGCAA 61.316 50.000 0.00 0.00 39.57 4.08
957 1007 3.321682 CCCTGTTTTGCAATCCTCTGAAA 59.678 43.478 0.00 0.00 0.00 2.69
960 1010 4.692228 TGTTTTGCAATCCTCTGAAAACC 58.308 39.130 0.00 0.00 36.24 3.27
963 1013 5.549742 TTTGCAATCCTCTGAAAACCATT 57.450 34.783 0.00 0.00 0.00 3.16
964 1014 6.662865 TTTGCAATCCTCTGAAAACCATTA 57.337 33.333 0.00 0.00 0.00 1.90
965 1015 6.662865 TTGCAATCCTCTGAAAACCATTAA 57.337 33.333 0.00 0.00 0.00 1.40
980 1030 6.839124 AACCATTAATCTTTGCTGTCATCA 57.161 33.333 0.00 0.00 0.00 3.07
994 1044 3.814625 TGTCATCACAGGTTGTAAGCAA 58.185 40.909 0.00 0.00 0.00 3.91
2452 2505 0.106894 CGTGGCCTAATTCCTCTCCC 59.893 60.000 3.32 0.00 0.00 4.30
2453 2506 1.512735 GTGGCCTAATTCCTCTCCCT 58.487 55.000 3.32 0.00 0.00 4.20
2454 2507 1.418264 GTGGCCTAATTCCTCTCCCTC 59.582 57.143 3.32 0.00 0.00 4.30
2494 2547 4.479993 CCGGAGCTGCAGGGGAAG 62.480 72.222 17.12 0.00 0.00 3.46
2495 2548 4.479993 CGGAGCTGCAGGGGAAGG 62.480 72.222 17.12 0.00 0.00 3.46
2496 2549 3.011517 GGAGCTGCAGGGGAAGGA 61.012 66.667 17.12 0.00 0.00 3.36
2497 2550 2.606587 GGAGCTGCAGGGGAAGGAA 61.607 63.158 17.12 0.00 0.00 3.36
2498 2551 1.077858 GAGCTGCAGGGGAAGGAAG 60.078 63.158 17.12 0.00 0.00 3.46
2499 2552 2.753446 GCTGCAGGGGAAGGAAGC 60.753 66.667 17.12 0.00 0.00 3.86
2500 2553 2.759114 CTGCAGGGGAAGGAAGCA 59.241 61.111 5.57 0.00 0.00 3.91
2501 2554 1.075482 CTGCAGGGGAAGGAAGCAA 59.925 57.895 5.57 0.00 34.45 3.91
2502 2555 0.964358 CTGCAGGGGAAGGAAGCAAG 60.964 60.000 5.57 0.00 34.45 4.01
2503 2556 1.680314 GCAGGGGAAGGAAGCAAGG 60.680 63.158 0.00 0.00 0.00 3.61
2504 2557 2.078452 CAGGGGAAGGAAGCAAGGA 58.922 57.895 0.00 0.00 0.00 3.36
2607 2660 7.709613 TCTCTCGGCCATAAGAATTTAGTAAAC 59.290 37.037 2.24 0.00 0.00 2.01
2627 2680 8.837389 AGTAAACCTTCATGTCTTGTTAAGTTC 58.163 33.333 0.00 0.00 0.00 3.01
2722 2788 4.736126 GGTTTTCCTTTGTATCCCATGG 57.264 45.455 4.14 4.14 36.94 3.66
2791 2858 0.944386 TTTTCGACAAGTCTGCTGGC 59.056 50.000 0.00 0.00 0.00 4.85
2792 2859 0.106708 TTTCGACAAGTCTGCTGGCT 59.893 50.000 0.00 0.00 0.00 4.75
2793 2860 0.319900 TTCGACAAGTCTGCTGGCTC 60.320 55.000 0.00 0.00 0.00 4.70
2794 2861 2.091112 CGACAAGTCTGCTGGCTCG 61.091 63.158 0.00 0.00 0.00 5.03
2795 2862 1.290324 GACAAGTCTGCTGGCTCGA 59.710 57.895 0.00 0.00 0.00 4.04
2796 2863 1.005630 ACAAGTCTGCTGGCTCGAC 60.006 57.895 0.00 7.23 0.00 4.20
2797 2864 1.291588 CAAGTCTGCTGGCTCGACT 59.708 57.895 0.00 10.53 39.53 4.18
2817 2887 2.574006 AGTTGCTCCTCATTTGCTCA 57.426 45.000 0.00 0.00 0.00 4.26
2835 2905 3.854784 GCTCATGTGTTTTGCTTCACTCC 60.855 47.826 0.00 0.00 35.82 3.85
2836 2906 2.290367 TCATGTGTTTTGCTTCACTCCG 59.710 45.455 0.00 0.00 35.82 4.63
2849 2959 2.348998 CTCCGAGCTTGTTGGCCT 59.651 61.111 3.32 0.00 0.00 5.19
2860 2977 1.732941 TGTTGGCCTGTAGCGTAATG 58.267 50.000 3.32 0.00 45.17 1.90
2872 2991 5.184340 GTAGCGTAATGGTACTCACATCT 57.816 43.478 0.00 0.00 45.87 2.90
2875 2994 3.486108 GCGTAATGGTACTCACATCTTCG 59.514 47.826 0.00 0.00 0.00 3.79
2884 3003 4.527509 ACTCACATCTTCGTCACTGAAT 57.472 40.909 0.00 0.00 0.00 2.57
2886 3005 3.501950 TCACATCTTCGTCACTGAATCG 58.498 45.455 0.00 0.00 0.00 3.34
2907 3027 1.210722 GAGGACCCAGGAATGGAGTTC 59.789 57.143 0.00 0.00 36.04 3.01
2908 3028 0.107654 GGACCCAGGAATGGAGTTCG 60.108 60.000 0.00 0.00 37.73 3.95
2909 3029 0.107654 GACCCAGGAATGGAGTTCGG 60.108 60.000 0.00 0.00 37.73 4.30
2910 3030 0.840722 ACCCAGGAATGGAGTTCGGT 60.841 55.000 0.00 0.00 37.73 4.69
2913 3033 2.084546 CCAGGAATGGAGTTCGGTTTC 58.915 52.381 0.00 0.00 37.73 2.78
2915 3035 1.985895 AGGAATGGAGTTCGGTTTCCT 59.014 47.619 0.00 0.00 40.98 3.36
2917 3037 3.154710 GGAATGGAGTTCGGTTTCCTTT 58.845 45.455 0.00 2.48 37.73 3.11
2918 3038 3.057526 GGAATGGAGTTCGGTTTCCTTTG 60.058 47.826 6.08 0.00 37.73 2.77
3096 3220 0.249322 ACACGTCGTTCAGTTCCAGG 60.249 55.000 0.00 0.00 0.00 4.45
3099 3223 0.859232 CGTCGTTCAGTTCCAGGTTG 59.141 55.000 0.00 0.00 0.00 3.77
3102 3226 0.588252 CGTTCAGTTCCAGGTTGCAG 59.412 55.000 0.00 0.00 0.00 4.41
3111 3235 4.335647 AGGTTGCAGCCTGGACCG 62.336 66.667 22.70 0.00 37.50 4.79
3128 3252 3.735029 GCGTCGACGACCAGACCT 61.735 66.667 39.74 0.00 43.02 3.85
3129 3253 2.479650 CGTCGACGACCAGACCTC 59.520 66.667 33.35 0.00 43.02 3.85
3130 3254 2.322830 CGTCGACGACCAGACCTCA 61.323 63.158 33.35 0.00 43.02 3.86
3131 3255 1.209640 GTCGACGACCAGACCTCAC 59.790 63.158 17.25 0.00 0.00 3.51
3132 3256 1.970114 TCGACGACCAGACCTCACC 60.970 63.158 0.00 0.00 0.00 4.02
3133 3257 1.972223 CGACGACCAGACCTCACCT 60.972 63.158 0.00 0.00 0.00 4.00
3134 3258 1.587054 GACGACCAGACCTCACCTG 59.413 63.158 0.00 0.00 0.00 4.00
3139 3263 2.973899 CAGACCTCACCTGGACCG 59.026 66.667 0.00 0.00 0.00 4.79
3140 3264 2.997897 AGACCTCACCTGGACCGC 60.998 66.667 0.00 0.00 0.00 5.68
3141 3265 4.436998 GACCTCACCTGGACCGCG 62.437 72.222 0.00 0.00 0.00 6.46
3143 3267 4.436998 CCTCACCTGGACCGCGTC 62.437 72.222 4.92 2.44 0.00 5.19
3144 3268 4.778415 CTCACCTGGACCGCGTCG 62.778 72.222 4.92 0.00 32.65 5.12
3156 3280 3.735029 GCGTCGACGACCAGACCT 61.735 66.667 39.74 0.00 43.02 3.85
3157 3281 2.479650 CGTCGACGACCAGACCTC 59.520 66.667 33.35 0.00 43.02 3.85
3158 3282 2.322830 CGTCGACGACCAGACCTCA 61.323 63.158 33.35 0.00 43.02 3.86
3159 3283 1.209640 GTCGACGACCAGACCTCAC 59.790 63.158 17.25 0.00 0.00 3.51
3160 3284 1.970114 TCGACGACCAGACCTCACC 60.970 63.158 0.00 0.00 0.00 4.02
3161 3285 1.972223 CGACGACCAGACCTCACCT 60.972 63.158 0.00 0.00 0.00 4.00
3162 3286 1.587054 GACGACCAGACCTCACCTG 59.413 63.158 0.00 0.00 0.00 4.00
3167 3291 2.973899 CAGACCTCACCTGGACCG 59.026 66.667 0.00 0.00 0.00 4.79
3168 3292 2.997897 AGACCTCACCTGGACCGC 60.998 66.667 0.00 0.00 0.00 5.68
3169 3293 4.436998 GACCTCACCTGGACCGCG 62.437 72.222 0.00 0.00 0.00 6.46
3171 3295 4.436998 CCTCACCTGGACCGCGTC 62.437 72.222 4.92 2.44 0.00 5.19
3172 3296 4.778415 CTCACCTGGACCGCGTCG 62.778 72.222 4.92 0.00 32.65 5.12
3185 3309 4.789075 CGTCGCGTAGGTGGGTGG 62.789 72.222 5.77 0.00 0.00 4.61
3186 3310 3.376078 GTCGCGTAGGTGGGTGGA 61.376 66.667 5.77 0.00 0.00 4.02
3187 3311 2.363276 TCGCGTAGGTGGGTGGAT 60.363 61.111 5.77 0.00 0.00 3.41
3188 3312 2.106332 CGCGTAGGTGGGTGGATC 59.894 66.667 0.00 0.00 0.00 3.36
3189 3313 2.106332 GCGTAGGTGGGTGGATCG 59.894 66.667 0.00 0.00 0.00 3.69
3190 3314 2.106332 CGTAGGTGGGTGGATCGC 59.894 66.667 0.00 0.00 0.00 4.58
3191 3315 2.504519 GTAGGTGGGTGGATCGCC 59.495 66.667 0.00 0.00 35.16 5.54
3192 3316 3.151710 TAGGTGGGTGGATCGCCG 61.152 66.667 0.00 0.00 39.59 6.46
3193 3317 3.968837 TAGGTGGGTGGATCGCCGT 62.969 63.158 0.00 0.00 39.59 5.68
3194 3318 4.404098 GGTGGGTGGATCGCCGTT 62.404 66.667 0.00 0.00 36.79 4.44
3195 3319 2.818274 GTGGGTGGATCGCCGTTC 60.818 66.667 0.00 0.00 36.79 3.95
3196 3320 4.444838 TGGGTGGATCGCCGTTCG 62.445 66.667 0.00 0.00 36.79 3.95
3197 3321 4.446413 GGGTGGATCGCCGTTCGT 62.446 66.667 0.00 0.00 39.67 3.85
3198 3322 2.884207 GGTGGATCGCCGTTCGTC 60.884 66.667 0.00 0.00 39.67 4.20
3199 3323 2.884207 GTGGATCGCCGTTCGTCC 60.884 66.667 0.00 8.09 38.21 4.79
3200 3324 4.137872 TGGATCGCCGTTCGTCCC 62.138 66.667 10.73 6.94 37.48 4.46
3201 3325 4.137872 GGATCGCCGTTCGTCCCA 62.138 66.667 0.00 0.00 39.67 4.37
3202 3326 2.884207 GATCGCCGTTCGTCCCAC 60.884 66.667 0.00 0.00 39.67 4.61
3203 3327 3.352338 GATCGCCGTTCGTCCCACT 62.352 63.158 0.00 0.00 39.67 4.00
3204 3328 2.830704 GATCGCCGTTCGTCCCACTT 62.831 60.000 0.00 0.00 39.67 3.16
3205 3329 2.444700 ATCGCCGTTCGTCCCACTTT 62.445 55.000 0.00 0.00 39.67 2.66
3206 3330 2.664436 CGCCGTTCGTCCCACTTTC 61.664 63.158 0.00 0.00 0.00 2.62
3207 3331 2.322830 GCCGTTCGTCCCACTTTCC 61.323 63.158 0.00 0.00 0.00 3.13
3208 3332 1.670083 CCGTTCGTCCCACTTTCCC 60.670 63.158 0.00 0.00 0.00 3.97
3209 3333 1.070105 CGTTCGTCCCACTTTCCCA 59.930 57.895 0.00 0.00 0.00 4.37
3210 3334 1.226030 CGTTCGTCCCACTTTCCCAC 61.226 60.000 0.00 0.00 0.00 4.61
3211 3335 0.887836 GTTCGTCCCACTTTCCCACC 60.888 60.000 0.00 0.00 0.00 4.61
3212 3336 2.358247 CGTCCCACTTTCCCACCG 60.358 66.667 0.00 0.00 0.00 4.94
3213 3337 2.874664 CGTCCCACTTTCCCACCGA 61.875 63.158 0.00 0.00 0.00 4.69
3214 3338 1.302271 GTCCCACTTTCCCACCGAC 60.302 63.158 0.00 0.00 0.00 4.79
3215 3339 1.766864 TCCCACTTTCCCACCGACA 60.767 57.895 0.00 0.00 0.00 4.35
3216 3340 1.599797 CCCACTTTCCCACCGACAC 60.600 63.158 0.00 0.00 0.00 3.67
3217 3341 1.599797 CCACTTTCCCACCGACACC 60.600 63.158 0.00 0.00 0.00 4.16
3218 3342 1.599797 CACTTTCCCACCGACACCC 60.600 63.158 0.00 0.00 0.00 4.61
3219 3343 2.073716 ACTTTCCCACCGACACCCA 61.074 57.895 0.00 0.00 0.00 4.51
3220 3344 1.599797 CTTTCCCACCGACACCCAC 60.600 63.158 0.00 0.00 0.00 4.61
3221 3345 3.463728 TTTCCCACCGACACCCACG 62.464 63.158 0.00 0.00 0.00 4.94
3223 3347 4.244463 CCCACCGACACCCACGTT 62.244 66.667 0.00 0.00 0.00 3.99
3224 3348 2.735883 CCACCGACACCCACGTTA 59.264 61.111 0.00 0.00 0.00 3.18
3225 3349 1.665599 CCACCGACACCCACGTTAC 60.666 63.158 0.00 0.00 0.00 2.50
3226 3350 1.665599 CACCGACACCCACGTTACC 60.666 63.158 0.00 0.00 0.00 2.85
3227 3351 2.132996 ACCGACACCCACGTTACCA 61.133 57.895 0.00 0.00 0.00 3.25
3228 3352 1.665599 CCGACACCCACGTTACCAC 60.666 63.158 0.00 0.00 0.00 4.16
3239 3363 2.079941 CGTTACCACGTGTTTGTGTG 57.920 50.000 15.65 0.00 41.84 3.82
3240 3364 1.817609 GTTACCACGTGTTTGTGTGC 58.182 50.000 15.65 0.00 38.20 4.57
3241 3365 0.374063 TTACCACGTGTTTGTGTGCG 59.626 50.000 15.65 0.00 38.20 5.34
3242 3366 2.037913 TACCACGTGTTTGTGTGCGC 62.038 55.000 15.65 0.00 38.20 6.09
3243 3367 3.010692 CACGTGTTTGTGTGCGCG 61.011 61.111 7.58 0.00 43.25 6.86
3244 3368 3.189473 ACGTGTTTGTGTGCGCGA 61.189 55.556 12.10 0.00 40.54 5.87
3245 3369 2.717190 CGTGTTTGTGTGCGCGAC 60.717 61.111 12.10 5.96 40.54 5.19
3246 3370 2.401592 GTGTTTGTGTGCGCGACA 59.598 55.556 12.10 9.00 0.00 4.35
3254 3378 2.853914 GTGCGCGACACCTTTCTC 59.146 61.111 12.10 0.00 44.02 2.87
3255 3379 2.357034 TGCGCGACACCTTTCTCC 60.357 61.111 12.10 0.00 0.00 3.71
3256 3380 2.357034 GCGCGACACCTTTCTCCA 60.357 61.111 12.10 0.00 0.00 3.86
3257 3381 2.383527 GCGCGACACCTTTCTCCAG 61.384 63.158 12.10 0.00 0.00 3.86
3258 3382 2.383527 CGCGACACCTTTCTCCAGC 61.384 63.158 0.00 0.00 0.00 4.85
3259 3383 1.004440 GCGACACCTTTCTCCAGCT 60.004 57.895 0.00 0.00 0.00 4.24
3260 3384 1.016653 GCGACACCTTTCTCCAGCTC 61.017 60.000 0.00 0.00 0.00 4.09
3261 3385 0.605589 CGACACCTTTCTCCAGCTCT 59.394 55.000 0.00 0.00 0.00 4.09
3262 3386 1.671261 CGACACCTTTCTCCAGCTCTG 60.671 57.143 0.00 0.00 0.00 3.35
3272 3396 3.223661 CCAGCTCTGGTTCACACTC 57.776 57.895 7.75 0.00 45.53 3.51
3273 3397 0.668706 CCAGCTCTGGTTCACACTCG 60.669 60.000 7.75 0.00 45.53 4.18
3274 3398 0.032678 CAGCTCTGGTTCACACTCGT 59.967 55.000 0.00 0.00 0.00 4.18
3275 3399 1.269723 CAGCTCTGGTTCACACTCGTA 59.730 52.381 0.00 0.00 0.00 3.43
3276 3400 1.961394 AGCTCTGGTTCACACTCGTAA 59.039 47.619 0.00 0.00 0.00 3.18
3277 3401 2.364324 AGCTCTGGTTCACACTCGTAAA 59.636 45.455 0.00 0.00 0.00 2.01
3278 3402 2.475487 GCTCTGGTTCACACTCGTAAAC 59.525 50.000 0.00 0.00 0.00 2.01
3279 3403 3.713288 CTCTGGTTCACACTCGTAAACA 58.287 45.455 0.00 0.00 0.00 2.83
3280 3404 3.450578 TCTGGTTCACACTCGTAAACAC 58.549 45.455 0.00 0.00 0.00 3.32
3281 3405 2.195096 TGGTTCACACTCGTAAACACG 58.805 47.619 0.00 0.00 0.00 4.49
3282 3406 1.071041 GGTTCACACTCGTAAACACGC 60.071 52.381 0.00 0.00 0.00 5.34
3283 3407 1.856597 GTTCACACTCGTAAACACGCT 59.143 47.619 0.00 0.00 0.00 5.07
3284 3408 1.762419 TCACACTCGTAAACACGCTC 58.238 50.000 0.00 0.00 0.00 5.03
3285 3409 1.065851 TCACACTCGTAAACACGCTCA 59.934 47.619 0.00 0.00 0.00 4.26
3286 3410 2.058798 CACACTCGTAAACACGCTCAT 58.941 47.619 0.00 0.00 0.00 2.90
3287 3411 2.475111 CACACTCGTAAACACGCTCATT 59.525 45.455 0.00 0.00 0.00 2.57
3288 3412 3.059868 CACACTCGTAAACACGCTCATTT 60.060 43.478 0.00 0.00 0.00 2.32
3289 3413 3.183775 ACACTCGTAAACACGCTCATTTC 59.816 43.478 0.00 0.00 0.00 2.17
3290 3414 3.428870 CACTCGTAAACACGCTCATTTCT 59.571 43.478 0.00 0.00 0.00 2.52
3291 3415 3.428870 ACTCGTAAACACGCTCATTTCTG 59.571 43.478 0.00 0.00 0.00 3.02
3292 3416 3.386486 TCGTAAACACGCTCATTTCTGT 58.614 40.909 0.00 0.00 0.00 3.41
3293 3417 3.183574 TCGTAAACACGCTCATTTCTGTG 59.816 43.478 0.00 0.00 38.28 3.66
3294 3418 3.183574 CGTAAACACGCTCATTTCTGTGA 59.816 43.478 0.00 0.00 36.25 3.58
3295 3419 4.318475 CGTAAACACGCTCATTTCTGTGAA 60.318 41.667 0.00 0.00 36.25 3.18
3296 3420 4.630894 AAACACGCTCATTTCTGTGAAA 57.369 36.364 0.00 0.00 36.25 2.69
3297 3421 4.630894 AACACGCTCATTTCTGTGAAAA 57.369 36.364 0.00 0.00 36.25 2.29
3298 3422 4.214980 ACACGCTCATTTCTGTGAAAAG 57.785 40.909 0.00 0.00 36.25 2.27
3299 3423 3.876914 ACACGCTCATTTCTGTGAAAAGA 59.123 39.130 0.00 0.00 36.25 2.52
3300 3424 4.335315 ACACGCTCATTTCTGTGAAAAGAA 59.665 37.500 0.00 0.00 36.25 2.52
3302 3426 5.743398 CACGCTCATTTCTGTGAAAAGAAAA 59.257 36.000 3.70 0.00 46.37 2.29
3303 3427 5.973565 ACGCTCATTTCTGTGAAAAGAAAAG 59.026 36.000 3.70 0.35 46.37 2.27
3304 3428 6.183360 ACGCTCATTTCTGTGAAAAGAAAAGA 60.183 34.615 3.70 4.41 46.37 2.52
3306 3430 7.620397 CTCATTTCTGTGAAAAGAAAAGAGC 57.380 36.000 15.03 0.00 46.47 4.09
3307 3431 7.338800 TCATTTCTGTGAAAAGAAAAGAGCT 57.661 32.000 3.70 0.00 46.37 4.09
3308 3432 8.450578 TCATTTCTGTGAAAAGAAAAGAGCTA 57.549 30.769 3.70 0.00 46.37 3.32
3309 3433 8.902806 TCATTTCTGTGAAAAGAAAAGAGCTAA 58.097 29.630 3.70 0.00 46.37 3.09
3310 3434 9.688592 CATTTCTGTGAAAAGAAAAGAGCTAAT 57.311 29.630 3.70 0.00 46.37 1.73
3317 3441 9.704098 GTGAAAAGAAAAGAGCTAATTATACCG 57.296 33.333 0.00 0.00 0.00 4.02
3318 3442 8.889717 TGAAAAGAAAAGAGCTAATTATACCGG 58.110 33.333 0.00 0.00 0.00 5.28
3319 3443 6.862711 AAGAAAAGAGCTAATTATACCGGC 57.137 37.500 0.00 0.00 0.00 6.13
3320 3444 5.306394 AGAAAAGAGCTAATTATACCGGCC 58.694 41.667 0.00 0.00 0.00 6.13
3321 3445 3.314541 AAGAGCTAATTATACCGGCCG 57.685 47.619 21.04 21.04 0.00 6.13
3322 3446 2.245582 AGAGCTAATTATACCGGCCGT 58.754 47.619 26.12 14.84 0.00 5.68
3323 3447 3.424703 AGAGCTAATTATACCGGCCGTA 58.575 45.455 26.12 16.64 0.00 4.02
3324 3448 3.192212 AGAGCTAATTATACCGGCCGTAC 59.808 47.826 26.12 3.17 0.00 3.67
3325 3449 2.892852 AGCTAATTATACCGGCCGTACA 59.107 45.455 26.12 8.88 0.00 2.90
3326 3450 2.989166 GCTAATTATACCGGCCGTACAC 59.011 50.000 26.12 0.00 0.00 2.90
3327 3451 3.552684 GCTAATTATACCGGCCGTACACA 60.553 47.826 26.12 5.08 0.00 3.72
3328 3452 2.514205 ATTATACCGGCCGTACACAC 57.486 50.000 26.12 0.00 0.00 3.82
3343 3467 3.712655 CACGAACTTGTGTGGCGA 58.287 55.556 0.00 0.00 35.12 5.54
3344 3468 2.010670 CACGAACTTGTGTGGCGAA 58.989 52.632 0.00 0.00 35.12 4.70
3345 3469 0.375454 CACGAACTTGTGTGGCGAAA 59.625 50.000 0.00 0.00 35.12 3.46
3346 3470 1.088306 ACGAACTTGTGTGGCGAAAA 58.912 45.000 0.00 0.00 0.00 2.29
3347 3471 1.673920 ACGAACTTGTGTGGCGAAAAT 59.326 42.857 0.00 0.00 0.00 1.82
3348 3472 2.873472 ACGAACTTGTGTGGCGAAAATA 59.127 40.909 0.00 0.00 0.00 1.40
3349 3473 3.500680 ACGAACTTGTGTGGCGAAAATAT 59.499 39.130 0.00 0.00 0.00 1.28
3350 3474 4.023536 ACGAACTTGTGTGGCGAAAATATT 60.024 37.500 0.00 0.00 0.00 1.28
3351 3475 4.915085 CGAACTTGTGTGGCGAAAATATTT 59.085 37.500 0.00 0.00 0.00 1.40
3352 3476 5.401079 CGAACTTGTGTGGCGAAAATATTTT 59.599 36.000 13.24 13.24 0.00 1.82
3353 3477 6.074569 CGAACTTGTGTGGCGAAAATATTTTT 60.075 34.615 14.45 0.00 0.00 1.94
3354 3478 7.113684 CGAACTTGTGTGGCGAAAATATTTTTA 59.886 33.333 14.45 0.49 0.00 1.52
3355 3479 8.649973 AACTTGTGTGGCGAAAATATTTTTAA 57.350 26.923 14.45 0.00 0.00 1.52
3356 3480 8.067780 ACTTGTGTGGCGAAAATATTTTTAAC 57.932 30.769 14.45 10.71 0.00 2.01
3357 3481 7.707035 ACTTGTGTGGCGAAAATATTTTTAACA 59.293 29.630 14.45 12.73 0.00 2.41
3358 3482 7.396190 TGTGTGGCGAAAATATTTTTAACAC 57.604 32.000 24.42 24.42 34.09 3.32
3359 3483 6.978659 TGTGTGGCGAAAATATTTTTAACACA 59.021 30.769 26.95 26.95 37.18 3.72
3360 3484 7.043325 TGTGTGGCGAAAATATTTTTAACACAC 60.043 33.333 34.47 34.47 45.36 3.82
3361 3485 6.978659 TGTGGCGAAAATATTTTTAACACACA 59.021 30.769 25.24 23.07 34.90 3.72
3362 3486 7.491372 TGTGGCGAAAATATTTTTAACACACAA 59.509 29.630 25.24 13.73 34.90 3.33
3363 3487 8.328864 GTGGCGAAAATATTTTTAACACACAAA 58.671 29.630 23.38 3.33 32.48 2.83
3364 3488 8.328864 TGGCGAAAATATTTTTAACACACAAAC 58.671 29.630 14.45 0.00 0.00 2.93
3365 3489 8.544597 GGCGAAAATATTTTTAACACACAAACT 58.455 29.630 14.45 0.00 0.00 2.66
3366 3490 9.909043 GCGAAAATATTTTTAACACACAAACTT 57.091 25.926 14.45 0.00 0.00 2.66
3376 3500 9.745880 TTTTAACACACAAACTTACAAAAGTGA 57.254 25.926 0.00 0.00 45.37 3.41
3377 3501 9.745880 TTTAACACACAAACTTACAAAAGTGAA 57.254 25.926 0.00 0.00 45.37 3.18
3378 3502 9.745880 TTAACACACAAACTTACAAAAGTGAAA 57.254 25.926 0.00 0.00 45.37 2.69
3379 3503 8.825667 AACACACAAACTTACAAAAGTGAAAT 57.174 26.923 0.00 0.00 45.37 2.17
3380 3504 8.238481 ACACACAAACTTACAAAAGTGAAATG 57.762 30.769 0.00 0.00 45.37 2.32
3381 3505 7.330700 ACACACAAACTTACAAAAGTGAAATGG 59.669 33.333 0.00 0.00 45.37 3.16
3382 3506 7.330700 CACACAAACTTACAAAAGTGAAATGGT 59.669 33.333 0.00 0.00 45.37 3.55
3383 3507 7.875554 ACACAAACTTACAAAAGTGAAATGGTT 59.124 29.630 0.00 0.00 45.37 3.67
3384 3508 8.716909 CACAAACTTACAAAAGTGAAATGGTTT 58.283 29.630 0.00 0.00 45.37 3.27
3385 3509 9.278978 ACAAACTTACAAAAGTGAAATGGTTTT 57.721 25.926 0.00 0.00 45.37 2.43
3388 3512 9.719355 AACTTACAAAAGTGAAATGGTTTTTCT 57.281 25.926 0.42 0.00 45.37 2.52
3389 3513 9.719355 ACTTACAAAAGTGAAATGGTTTTTCTT 57.281 25.926 0.42 0.00 44.40 2.52
3393 3517 7.807433 ACAAAAGTGAAATGGTTTTTCTTTTGC 59.193 29.630 24.62 0.00 45.54 3.68
3394 3518 5.717038 AGTGAAATGGTTTTTCTTTTGCG 57.283 34.783 0.42 0.00 0.00 4.85
3395 3519 4.570369 AGTGAAATGGTTTTTCTTTTGCGG 59.430 37.500 0.42 0.00 0.00 5.69
3396 3520 3.873952 TGAAATGGTTTTTCTTTTGCGGG 59.126 39.130 0.42 0.00 0.00 6.13
3397 3521 3.552132 AATGGTTTTTCTTTTGCGGGT 57.448 38.095 0.00 0.00 0.00 5.28
3398 3522 4.674281 AATGGTTTTTCTTTTGCGGGTA 57.326 36.364 0.00 0.00 0.00 3.69
3399 3523 3.439895 TGGTTTTTCTTTTGCGGGTAC 57.560 42.857 0.00 0.00 0.00 3.34
3400 3524 2.758979 TGGTTTTTCTTTTGCGGGTACA 59.241 40.909 0.00 0.00 0.00 2.90
3401 3525 3.194968 TGGTTTTTCTTTTGCGGGTACAA 59.805 39.130 0.00 0.00 0.00 2.41
3402 3526 4.182339 GGTTTTTCTTTTGCGGGTACAAA 58.818 39.130 0.00 0.00 37.74 2.83
3403 3527 4.269123 GGTTTTTCTTTTGCGGGTACAAAG 59.731 41.667 0.00 0.00 40.43 2.77
3404 3528 4.722361 TTTTCTTTTGCGGGTACAAAGT 57.278 36.364 0.00 0.00 40.43 2.66
3405 3529 3.701532 TTCTTTTGCGGGTACAAAGTG 57.298 42.857 0.00 0.00 40.43 3.16
3406 3530 2.920524 TCTTTTGCGGGTACAAAGTGA 58.079 42.857 0.00 0.00 40.43 3.41
3407 3531 3.280295 TCTTTTGCGGGTACAAAGTGAA 58.720 40.909 0.00 0.00 40.43 3.18
3408 3532 3.695060 TCTTTTGCGGGTACAAAGTGAAA 59.305 39.130 0.00 0.00 40.43 2.69
3409 3533 4.158025 TCTTTTGCGGGTACAAAGTGAAAA 59.842 37.500 0.00 0.00 40.43 2.29
3410 3534 4.657436 TTTGCGGGTACAAAGTGAAAAT 57.343 36.364 0.00 0.00 34.68 1.82
3411 3535 5.769484 TTTGCGGGTACAAAGTGAAAATA 57.231 34.783 0.00 0.00 34.68 1.40
3412 3536 5.968528 TTGCGGGTACAAAGTGAAAATAT 57.031 34.783 0.00 0.00 0.00 1.28
3413 3537 5.968528 TGCGGGTACAAAGTGAAAATATT 57.031 34.783 0.00 0.00 0.00 1.28
3414 3538 6.334102 TGCGGGTACAAAGTGAAAATATTT 57.666 33.333 0.00 0.00 0.00 1.40
3415 3539 6.750148 TGCGGGTACAAAGTGAAAATATTTT 58.250 32.000 13.24 13.24 0.00 1.82
3416 3540 6.642950 TGCGGGTACAAAGTGAAAATATTTTG 59.357 34.615 17.98 6.01 36.77 2.44
3417 3541 6.864165 GCGGGTACAAAGTGAAAATATTTTGA 59.136 34.615 17.98 7.09 35.21 2.69
3418 3542 7.061789 GCGGGTACAAAGTGAAAATATTTTGAG 59.938 37.037 17.98 0.97 35.21 3.02
3419 3543 7.061789 CGGGTACAAAGTGAAAATATTTTGAGC 59.938 37.037 17.98 7.77 35.21 4.26
3420 3544 7.870445 GGGTACAAAGTGAAAATATTTTGAGCA 59.130 33.333 17.98 7.35 35.21 4.26
3421 3545 8.699749 GGTACAAAGTGAAAATATTTTGAGCAC 58.300 33.333 17.98 17.59 35.21 4.40
3422 3546 9.243637 GTACAAAGTGAAAATATTTTGAGCACA 57.756 29.630 22.92 12.14 35.21 4.57
3423 3547 8.130307 ACAAAGTGAAAATATTTTGAGCACAC 57.870 30.769 22.92 19.75 35.21 3.82
3424 3548 7.763528 ACAAAGTGAAAATATTTTGAGCACACA 59.236 29.630 22.92 11.07 35.21 3.72
3425 3549 8.602328 CAAAGTGAAAATATTTTGAGCACACAA 58.398 29.630 22.92 0.00 33.50 3.33
3426 3550 8.715191 AAGTGAAAATATTTTGAGCACACAAA 57.285 26.923 22.92 0.00 37.87 2.83
3427 3551 8.130307 AGTGAAAATATTTTGAGCACACAAAC 57.870 30.769 22.92 7.19 39.08 2.93
3428 3552 7.981225 AGTGAAAATATTTTGAGCACACAAACT 59.019 29.630 22.92 7.94 39.08 2.66
3429 3553 8.603181 GTGAAAATATTTTGAGCACACAAACTT 58.397 29.630 17.98 0.00 39.08 2.66
3430 3554 8.602328 TGAAAATATTTTGAGCACACAAACTTG 58.398 29.630 17.98 0.00 39.08 3.16
3431 3555 6.529463 AATATTTTGAGCACACAAACTTGC 57.471 33.333 0.00 0.00 39.08 4.01
3432 3556 3.309961 TTTTGAGCACACAAACTTGCA 57.690 38.095 0.00 0.00 41.48 4.08
3433 3557 3.309961 TTTGAGCACACAAACTTGCAA 57.690 38.095 0.00 0.00 41.48 4.08
3434 3558 3.309961 TTGAGCACACAAACTTGCAAA 57.690 38.095 0.00 0.00 41.48 3.68
3435 3559 3.309961 TGAGCACACAAACTTGCAAAA 57.690 38.095 0.00 0.00 41.48 2.44
3436 3560 2.992543 TGAGCACACAAACTTGCAAAAC 59.007 40.909 0.00 0.00 41.48 2.43
3437 3561 1.991965 AGCACACAAACTTGCAAAACG 59.008 42.857 0.00 0.00 41.48 3.60
3438 3562 1.724082 GCACACAAACTTGCAAAACGT 59.276 42.857 0.00 0.00 38.68 3.99
3439 3563 2.472073 GCACACAAACTTGCAAAACGTG 60.472 45.455 0.00 8.35 38.68 4.49
3440 3564 2.983136 CACACAAACTTGCAAAACGTGA 59.017 40.909 19.09 0.00 0.00 4.35
3441 3565 3.611986 CACACAAACTTGCAAAACGTGAT 59.388 39.130 19.09 6.26 0.00 3.06
3442 3566 4.795795 CACACAAACTTGCAAAACGTGATA 59.204 37.500 19.09 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.564406 GGTTTCAGATGAGTCCATGACACT 60.564 45.833 0.00 0.00 34.60 3.55
139 144 4.202315 TGAAGACCGGTCAGAATTCAGAAA 60.202 41.667 35.00 11.78 0.00 2.52
224 235 3.328050 GCTGCAACTCCTTATATACCCCT 59.672 47.826 0.00 0.00 0.00 4.79
305 319 1.377333 GGAGGAAAGCAACGGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
346 364 3.020274 TCAGGAACTCGGAGAAGATCTG 58.980 50.000 12.86 11.03 34.60 2.90
381 399 3.245407 ACCAAAGGAGATCAGGGAAAAGG 60.245 47.826 0.00 0.00 0.00 3.11
385 403 3.500289 CCAAACCAAAGGAGATCAGGGAA 60.500 47.826 0.00 0.00 0.00 3.97
400 426 4.636648 CGCCAAACTATACATACCAAACCA 59.363 41.667 0.00 0.00 0.00 3.67
409 435 3.071602 AGATCAGGCGCCAAACTATACAT 59.928 43.478 31.54 0.00 0.00 2.29
413 439 2.684881 CAAAGATCAGGCGCCAAACTAT 59.315 45.455 31.54 13.88 0.00 2.12
414 440 2.083774 CAAAGATCAGGCGCCAAACTA 58.916 47.619 31.54 9.07 0.00 2.24
479 505 1.396301 CGGCAAGCATCTTCAGAGAAC 59.604 52.381 0.00 0.00 35.07 3.01
498 524 0.248825 CTCGGCCAGATCTGAAGACG 60.249 60.000 24.62 20.98 0.00 4.18
571 601 1.588674 ACGAAAATTCACAGCACGGA 58.411 45.000 0.00 0.00 0.00 4.69
674 704 1.023513 GCTGTGCCTACTTCTGCAGG 61.024 60.000 15.13 0.36 38.34 4.85
703 733 3.811497 CGCAGCATGATCTAATTTGAGGA 59.189 43.478 0.00 0.00 39.69 3.71
724 754 0.814410 ATCAGATGCTGGCAGCTTCG 60.814 55.000 35.25 30.23 46.36 3.79
745 775 7.712205 AGCAAACAAGCATGAAAAATTCTAAGT 59.288 29.630 0.00 0.00 36.85 2.24
746 776 8.007716 CAGCAAACAAGCATGAAAAATTCTAAG 58.992 33.333 0.00 0.00 36.85 2.18
748 778 6.424509 CCAGCAAACAAGCATGAAAAATTCTA 59.575 34.615 0.00 0.00 36.85 2.10
752 782 4.706035 TCCAGCAAACAAGCATGAAAAAT 58.294 34.783 0.00 0.00 36.85 1.82
753 783 4.134379 TCCAGCAAACAAGCATGAAAAA 57.866 36.364 0.00 0.00 36.85 1.94
755 785 4.339872 AATCCAGCAAACAAGCATGAAA 57.660 36.364 0.00 0.00 36.85 2.69
756 786 5.465532 TTAATCCAGCAAACAAGCATGAA 57.534 34.783 0.00 0.00 36.85 2.57
817 847 6.529829 CAGAGTAAGTGACAGAAATGTAGAGC 59.470 42.308 0.00 0.00 0.00 4.09
822 852 7.865706 AAAACAGAGTAAGTGACAGAAATGT 57.134 32.000 0.00 0.00 0.00 2.71
865 899 8.930760 CGAGATTCAGATCTTAAAAACAGAGTT 58.069 33.333 0.00 0.00 42.66 3.01
866 900 8.307483 TCGAGATTCAGATCTTAAAAACAGAGT 58.693 33.333 0.00 0.00 42.66 3.24
867 901 8.694975 TCGAGATTCAGATCTTAAAAACAGAG 57.305 34.615 0.00 0.00 42.66 3.35
868 902 9.658799 AATCGAGATTCAGATCTTAAAAACAGA 57.341 29.630 0.00 0.00 42.66 3.41
869 903 9.699985 CAATCGAGATTCAGATCTTAAAAACAG 57.300 33.333 0.00 0.00 42.66 3.16
870 904 8.177663 GCAATCGAGATTCAGATCTTAAAAACA 58.822 33.333 0.00 0.00 42.66 2.83
871 905 8.394121 AGCAATCGAGATTCAGATCTTAAAAAC 58.606 33.333 0.00 0.00 42.66 2.43
902 936 6.183360 GCTCTTACTGCACATCTTCTTGTAAG 60.183 42.308 9.32 9.32 37.67 2.34
907 941 4.252073 CAGCTCTTACTGCACATCTTCTT 58.748 43.478 0.00 0.00 0.00 2.52
909 943 3.594134 ACAGCTCTTACTGCACATCTTC 58.406 45.455 0.00 0.00 41.60 2.87
910 944 3.594134 GACAGCTCTTACTGCACATCTT 58.406 45.455 0.00 0.00 41.60 2.40
936 986 4.589216 TTTCAGAGGATTGCAAAACAGG 57.411 40.909 1.71 0.00 0.00 4.00
944 994 7.105241 AGATTAATGGTTTTCAGAGGATTGC 57.895 36.000 0.00 0.00 0.00 3.56
947 997 7.398332 AGCAAAGATTAATGGTTTTCAGAGGAT 59.602 33.333 0.00 0.00 0.00 3.24
957 1007 6.209192 TGTGATGACAGCAAAGATTAATGGTT 59.791 34.615 0.00 0.00 0.00 3.67
2477 2530 4.479993 CTTCCCCTGCAGCTCCGG 62.480 72.222 8.66 3.70 0.00 5.14
2478 2531 4.479993 CCTTCCCCTGCAGCTCCG 62.480 72.222 8.66 0.00 0.00 4.63
2479 2532 2.549169 CTTCCTTCCCCTGCAGCTCC 62.549 65.000 8.66 0.00 0.00 4.70
2480 2533 1.077858 CTTCCTTCCCCTGCAGCTC 60.078 63.158 8.66 0.00 0.00 4.09
2481 2534 3.085223 CTTCCTTCCCCTGCAGCT 58.915 61.111 8.66 0.00 0.00 4.24
2482 2535 2.753446 GCTTCCTTCCCCTGCAGC 60.753 66.667 8.66 0.00 0.00 5.25
2483 2536 0.964358 CTTGCTTCCTTCCCCTGCAG 60.964 60.000 6.78 6.78 35.02 4.41
2484 2537 1.075482 CTTGCTTCCTTCCCCTGCA 59.925 57.895 0.00 0.00 0.00 4.41
2485 2538 1.680314 CCTTGCTTCCTTCCCCTGC 60.680 63.158 0.00 0.00 0.00 4.85
2486 2539 0.405585 TTCCTTGCTTCCTTCCCCTG 59.594 55.000 0.00 0.00 0.00 4.45
2487 2540 0.701147 CTTCCTTGCTTCCTTCCCCT 59.299 55.000 0.00 0.00 0.00 4.79
2488 2541 0.323816 CCTTCCTTGCTTCCTTCCCC 60.324 60.000 0.00 0.00 0.00 4.81
2489 2542 0.698818 TCCTTCCTTGCTTCCTTCCC 59.301 55.000 0.00 0.00 0.00 3.97
2490 2543 2.040412 TCTTCCTTCCTTGCTTCCTTCC 59.960 50.000 0.00 0.00 0.00 3.46
2491 2544 3.342719 CTCTTCCTTCCTTGCTTCCTTC 58.657 50.000 0.00 0.00 0.00 3.46
2492 2545 2.554124 GCTCTTCCTTCCTTGCTTCCTT 60.554 50.000 0.00 0.00 0.00 3.36
2493 2546 1.004161 GCTCTTCCTTCCTTGCTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
2494 2547 1.271597 TGCTCTTCCTTCCTTGCTTCC 60.272 52.381 0.00 0.00 0.00 3.46
2495 2548 2.191128 TGCTCTTCCTTCCTTGCTTC 57.809 50.000 0.00 0.00 0.00 3.86
2496 2549 2.107204 TCTTGCTCTTCCTTCCTTGCTT 59.893 45.455 0.00 0.00 0.00 3.91
2497 2550 1.701847 TCTTGCTCTTCCTTCCTTGCT 59.298 47.619 0.00 0.00 0.00 3.91
2498 2551 2.191128 TCTTGCTCTTCCTTCCTTGC 57.809 50.000 0.00 0.00 0.00 4.01
2499 2552 3.501445 CACTTCTTGCTCTTCCTTCCTTG 59.499 47.826 0.00 0.00 0.00 3.61
2500 2553 3.497584 CCACTTCTTGCTCTTCCTTCCTT 60.498 47.826 0.00 0.00 0.00 3.36
2501 2554 2.039613 CCACTTCTTGCTCTTCCTTCCT 59.960 50.000 0.00 0.00 0.00 3.36
2502 2555 2.224646 ACCACTTCTTGCTCTTCCTTCC 60.225 50.000 0.00 0.00 0.00 3.46
2503 2556 3.133141 ACCACTTCTTGCTCTTCCTTC 57.867 47.619 0.00 0.00 0.00 3.46
2504 2557 3.584733 AACCACTTCTTGCTCTTCCTT 57.415 42.857 0.00 0.00 0.00 3.36
2607 2660 4.154195 CGGGAACTTAACAAGACATGAAGG 59.846 45.833 0.00 0.00 0.00 3.46
2627 2680 1.327460 CAGACGCAAACATGTATCGGG 59.673 52.381 15.48 10.51 0.00 5.14
2668 2733 2.124278 GGGGCCCGAGGATTTGAC 60.124 66.667 17.79 0.00 0.00 3.18
2669 2734 2.286121 AGGGGCCCGAGGATTTGA 60.286 61.111 18.95 0.00 0.00 2.69
2670 2735 2.124151 CAGGGGCCCGAGGATTTG 60.124 66.667 18.95 3.76 0.00 2.32
2671 2736 2.614013 ACAGGGGCCCGAGGATTT 60.614 61.111 18.95 0.00 0.00 2.17
2672 2737 3.411517 CACAGGGGCCCGAGGATT 61.412 66.667 18.95 0.00 0.00 3.01
2709 2775 3.992943 AGTTCGTCCATGGGATACAAA 57.007 42.857 13.02 0.00 32.73 2.83
2722 2788 4.279659 CAAAACAGGCTACAAAGTTCGTC 58.720 43.478 0.00 0.00 0.00 4.20
2778 2845 1.005630 GTCGAGCCAGCAGACTTGT 60.006 57.895 9.92 0.00 32.58 3.16
2784 2851 1.080995 GCAACTAGTCGAGCCAGCAG 61.081 60.000 0.00 0.00 0.00 4.24
2788 2855 0.612174 AGGAGCAACTAGTCGAGCCA 60.612 55.000 0.00 0.00 0.00 4.75
2789 2856 0.101579 GAGGAGCAACTAGTCGAGCC 59.898 60.000 0.00 0.00 0.00 4.70
2790 2857 0.811915 TGAGGAGCAACTAGTCGAGC 59.188 55.000 0.00 0.95 0.00 5.03
2791 2858 3.791973 AATGAGGAGCAACTAGTCGAG 57.208 47.619 0.00 0.00 0.00 4.04
2792 2859 3.849911 CAAATGAGGAGCAACTAGTCGA 58.150 45.455 0.00 0.00 0.00 4.20
2793 2860 2.349886 GCAAATGAGGAGCAACTAGTCG 59.650 50.000 0.00 0.00 0.00 4.18
2794 2861 3.604582 AGCAAATGAGGAGCAACTAGTC 58.395 45.455 0.00 0.00 0.00 2.59
2795 2862 3.008375 TGAGCAAATGAGGAGCAACTAGT 59.992 43.478 0.00 0.00 0.00 2.57
2796 2863 3.603532 TGAGCAAATGAGGAGCAACTAG 58.396 45.455 0.00 0.00 0.00 2.57
2797 2864 3.701205 TGAGCAAATGAGGAGCAACTA 57.299 42.857 0.00 0.00 0.00 2.24
2817 2887 2.549754 CTCGGAGTGAAGCAAAACACAT 59.450 45.455 0.00 0.00 39.18 3.21
2835 2905 1.639298 GCTACAGGCCAACAAGCTCG 61.639 60.000 5.01 0.00 34.27 5.03
2836 2906 1.639298 CGCTACAGGCCAACAAGCTC 61.639 60.000 5.01 0.00 37.74 4.09
2849 2959 4.643334 AGATGTGAGTACCATTACGCTACA 59.357 41.667 0.00 0.00 32.93 2.74
2860 2977 3.190744 TCAGTGACGAAGATGTGAGTACC 59.809 47.826 0.00 0.00 0.00 3.34
2864 2983 3.545475 CGATTCAGTGACGAAGATGTGAG 59.455 47.826 0.00 0.00 0.00 3.51
2871 2990 1.472878 TCCTCCGATTCAGTGACGAAG 59.527 52.381 4.81 0.00 0.00 3.79
2872 2991 1.201647 GTCCTCCGATTCAGTGACGAA 59.798 52.381 4.81 0.00 0.00 3.85
2875 2994 0.175989 GGGTCCTCCGATTCAGTGAC 59.824 60.000 0.00 0.00 33.83 3.67
2884 3003 1.689233 CCATTCCTGGGTCCTCCGA 60.689 63.158 0.00 0.00 39.04 4.55
2886 3005 0.621862 ACTCCATTCCTGGGTCCTCC 60.622 60.000 0.00 0.00 43.34 4.30
2907 3027 1.083015 CGCGACACAAAGGAAACCG 60.083 57.895 0.00 0.00 0.00 4.44
2908 3028 1.161563 TCCGCGACACAAAGGAAACC 61.162 55.000 8.23 0.00 0.00 3.27
2909 3029 0.658897 TTCCGCGACACAAAGGAAAC 59.341 50.000 8.23 0.00 39.53 2.78
2910 3030 1.600023 ATTCCGCGACACAAAGGAAA 58.400 45.000 8.23 0.00 44.71 3.13
2913 3033 2.006888 ACATATTCCGCGACACAAAGG 58.993 47.619 8.23 0.00 0.00 3.11
2915 3035 2.413502 GCAACATATTCCGCGACACAAA 60.414 45.455 8.23 0.00 0.00 2.83
2917 3037 0.724549 GCAACATATTCCGCGACACA 59.275 50.000 8.23 0.00 0.00 3.72
2918 3038 0.724549 TGCAACATATTCCGCGACAC 59.275 50.000 8.23 0.00 0.00 3.67
2963 3083 0.713883 GTTGTCTCGCCATGTGTACG 59.286 55.000 0.00 0.00 0.00 3.67
2964 3084 1.076332 GGTTGTCTCGCCATGTGTAC 58.924 55.000 0.00 0.00 0.00 2.90
2965 3085 0.389296 CGGTTGTCTCGCCATGTGTA 60.389 55.000 0.00 0.00 0.00 2.90
2966 3086 1.667830 CGGTTGTCTCGCCATGTGT 60.668 57.895 0.00 0.00 0.00 3.72
2967 3087 2.390599 CCGGTTGTCTCGCCATGTG 61.391 63.158 0.00 0.00 0.00 3.21
2968 3088 2.047274 CCGGTTGTCTCGCCATGT 60.047 61.111 0.00 0.00 0.00 3.21
3054 3178 2.561956 TAGGCCGGTAGAGATGCGC 61.562 63.158 1.90 0.00 0.00 6.09
3111 3235 3.664223 GAGGTCTGGTCGTCGACGC 62.664 68.421 32.19 25.05 39.60 5.19
3112 3236 2.322830 TGAGGTCTGGTCGTCGACG 61.323 63.158 31.30 31.30 41.45 5.12
3113 3237 1.209640 GTGAGGTCTGGTCGTCGAC 59.790 63.158 17.16 17.16 0.00 4.20
3114 3238 1.970114 GGTGAGGTCTGGTCGTCGA 60.970 63.158 0.00 0.00 0.00 4.20
3115 3239 1.972223 AGGTGAGGTCTGGTCGTCG 60.972 63.158 0.00 0.00 0.00 5.12
3116 3240 1.587054 CAGGTGAGGTCTGGTCGTC 59.413 63.158 0.00 0.00 0.00 4.20
3117 3241 1.908793 CCAGGTGAGGTCTGGTCGT 60.909 63.158 2.21 0.00 44.97 4.34
3118 3242 2.973899 CCAGGTGAGGTCTGGTCG 59.026 66.667 2.21 0.00 44.97 4.79
3122 3246 2.973899 CGGTCCAGGTGAGGTCTG 59.026 66.667 0.00 0.00 0.00 3.51
3123 3247 2.997897 GCGGTCCAGGTGAGGTCT 60.998 66.667 0.00 0.00 0.00 3.85
3124 3248 4.436998 CGCGGTCCAGGTGAGGTC 62.437 72.222 0.00 0.00 0.00 3.85
3126 3250 4.436998 GACGCGGTCCAGGTGAGG 62.437 72.222 12.47 0.00 0.00 3.86
3127 3251 4.778415 CGACGCGGTCCAGGTGAG 62.778 72.222 12.47 0.00 0.00 3.51
3139 3263 3.664223 GAGGTCTGGTCGTCGACGC 62.664 68.421 32.19 25.05 39.60 5.19
3140 3264 2.322830 TGAGGTCTGGTCGTCGACG 61.323 63.158 31.30 31.30 41.45 5.12
3141 3265 1.209640 GTGAGGTCTGGTCGTCGAC 59.790 63.158 17.16 17.16 0.00 4.20
3142 3266 1.970114 GGTGAGGTCTGGTCGTCGA 60.970 63.158 0.00 0.00 0.00 4.20
3143 3267 1.972223 AGGTGAGGTCTGGTCGTCG 60.972 63.158 0.00 0.00 0.00 5.12
3144 3268 1.587054 CAGGTGAGGTCTGGTCGTC 59.413 63.158 0.00 0.00 0.00 4.20
3145 3269 1.908793 CCAGGTGAGGTCTGGTCGT 60.909 63.158 2.21 0.00 44.97 4.34
3146 3270 2.973899 CCAGGTGAGGTCTGGTCG 59.026 66.667 2.21 0.00 44.97 4.79
3150 3274 2.973899 CGGTCCAGGTGAGGTCTG 59.026 66.667 0.00 0.00 0.00 3.51
3151 3275 2.997897 GCGGTCCAGGTGAGGTCT 60.998 66.667 0.00 0.00 0.00 3.85
3152 3276 4.436998 CGCGGTCCAGGTGAGGTC 62.437 72.222 0.00 0.00 0.00 3.85
3154 3278 4.436998 GACGCGGTCCAGGTGAGG 62.437 72.222 12.47 0.00 0.00 3.86
3155 3279 4.778415 CGACGCGGTCCAGGTGAG 62.778 72.222 12.47 0.00 0.00 3.51
3168 3292 4.789075 CCACCCACCTACGCGACG 62.789 72.222 15.93 2.11 0.00 5.12
3169 3293 2.624437 GATCCACCCACCTACGCGAC 62.624 65.000 15.93 0.00 0.00 5.19
3170 3294 2.363276 ATCCACCCACCTACGCGA 60.363 61.111 15.93 0.00 0.00 5.87
3171 3295 2.106332 GATCCACCCACCTACGCG 59.894 66.667 3.53 3.53 0.00 6.01
3172 3296 2.106332 CGATCCACCCACCTACGC 59.894 66.667 0.00 0.00 0.00 4.42
3173 3297 2.106332 GCGATCCACCCACCTACG 59.894 66.667 0.00 0.00 0.00 3.51
3174 3298 2.504519 GGCGATCCACCCACCTAC 59.495 66.667 0.00 0.00 0.00 3.18
3175 3299 3.151710 CGGCGATCCACCCACCTA 61.152 66.667 0.00 0.00 0.00 3.08
3177 3301 4.404098 AACGGCGATCCACCCACC 62.404 66.667 16.62 0.00 0.00 4.61
3178 3302 2.818274 GAACGGCGATCCACCCAC 60.818 66.667 16.62 0.00 0.00 4.61
3179 3303 4.444838 CGAACGGCGATCCACCCA 62.445 66.667 16.62 0.00 44.57 4.51
3180 3304 4.446413 ACGAACGGCGATCCACCC 62.446 66.667 16.62 0.00 44.57 4.61
3181 3305 2.884207 GACGAACGGCGATCCACC 60.884 66.667 16.62 0.00 44.57 4.61
3182 3306 2.884207 GGACGAACGGCGATCCAC 60.884 66.667 16.62 6.80 44.57 4.02
3183 3307 4.137872 GGGACGAACGGCGATCCA 62.138 66.667 16.62 0.00 44.57 3.41
3184 3308 4.137872 TGGGACGAACGGCGATCC 62.138 66.667 16.62 14.41 44.57 3.36
3185 3309 2.830704 AAGTGGGACGAACGGCGATC 62.831 60.000 16.62 11.33 44.57 3.69
3186 3310 2.444700 AAAGTGGGACGAACGGCGAT 62.445 55.000 16.62 0.00 44.57 4.58
3187 3311 3.154584 AAAGTGGGACGAACGGCGA 62.155 57.895 16.62 0.00 44.57 5.54
3189 3313 2.322830 GGAAAGTGGGACGAACGGC 61.323 63.158 0.00 0.00 0.00 5.68
3190 3314 1.670083 GGGAAAGTGGGACGAACGG 60.670 63.158 0.00 0.00 0.00 4.44
3191 3315 1.070105 TGGGAAAGTGGGACGAACG 59.930 57.895 0.00 0.00 0.00 3.95
3192 3316 0.887836 GGTGGGAAAGTGGGACGAAC 60.888 60.000 0.00 0.00 0.00 3.95
3193 3317 1.452801 GGTGGGAAAGTGGGACGAA 59.547 57.895 0.00 0.00 0.00 3.85
3194 3318 2.874664 CGGTGGGAAAGTGGGACGA 61.875 63.158 0.00 0.00 0.00 4.20
3195 3319 2.358247 CGGTGGGAAAGTGGGACG 60.358 66.667 0.00 0.00 0.00 4.79
3196 3320 1.302271 GTCGGTGGGAAAGTGGGAC 60.302 63.158 0.00 0.00 0.00 4.46
3197 3321 1.766864 TGTCGGTGGGAAAGTGGGA 60.767 57.895 0.00 0.00 0.00 4.37
3198 3322 1.599797 GTGTCGGTGGGAAAGTGGG 60.600 63.158 0.00 0.00 0.00 4.61
3199 3323 1.599797 GGTGTCGGTGGGAAAGTGG 60.600 63.158 0.00 0.00 0.00 4.00
3200 3324 1.599797 GGGTGTCGGTGGGAAAGTG 60.600 63.158 0.00 0.00 0.00 3.16
3201 3325 2.073716 TGGGTGTCGGTGGGAAAGT 61.074 57.895 0.00 0.00 0.00 2.66
3202 3326 1.599797 GTGGGTGTCGGTGGGAAAG 60.600 63.158 0.00 0.00 0.00 2.62
3203 3327 2.511900 GTGGGTGTCGGTGGGAAA 59.488 61.111 0.00 0.00 0.00 3.13
3204 3328 3.931247 CGTGGGTGTCGGTGGGAA 61.931 66.667 0.00 0.00 0.00 3.97
3206 3330 2.870119 TAACGTGGGTGTCGGTGGG 61.870 63.158 0.00 0.00 0.00 4.61
3207 3331 1.665599 GTAACGTGGGTGTCGGTGG 60.666 63.158 0.00 0.00 0.00 4.61
3208 3332 1.665599 GGTAACGTGGGTGTCGGTG 60.666 63.158 0.00 0.00 0.00 4.94
3209 3333 2.132996 TGGTAACGTGGGTGTCGGT 61.133 57.895 0.00 0.00 42.51 4.69
3210 3334 1.665599 GTGGTAACGTGGGTGTCGG 60.666 63.158 0.00 0.00 42.51 4.79
3211 3335 2.017783 CGTGGTAACGTGGGTGTCG 61.018 63.158 0.00 0.00 44.93 4.35
3212 3336 3.941035 CGTGGTAACGTGGGTGTC 58.059 61.111 0.00 0.00 44.93 3.67
3221 3345 1.817609 GCACACAAACACGTGGTAAC 58.182 50.000 21.57 0.00 41.38 2.50
3222 3346 0.374063 CGCACACAAACACGTGGTAA 59.626 50.000 21.57 0.00 41.38 2.85
3223 3347 2.007549 CGCACACAAACACGTGGTA 58.992 52.632 21.57 0.00 41.38 3.25
3224 3348 2.788581 CGCACACAAACACGTGGT 59.211 55.556 21.57 11.47 41.38 4.16
3225 3349 2.650602 GCGCACACAAACACGTGG 60.651 61.111 21.57 4.47 41.38 4.94
3226 3350 3.010692 CGCGCACACAAACACGTG 61.011 61.111 15.48 15.48 42.81 4.49
3227 3351 3.189473 TCGCGCACACAAACACGT 61.189 55.556 8.75 0.00 0.00 4.49
3228 3352 2.717190 GTCGCGCACACAAACACG 60.717 61.111 8.75 0.00 0.00 4.49
3229 3353 2.401592 TGTCGCGCACACAAACAC 59.598 55.556 8.75 0.00 0.00 3.32
3237 3361 2.668280 GGAGAAAGGTGTCGCGCAC 61.668 63.158 20.56 20.56 46.97 5.34
3238 3362 2.357034 GGAGAAAGGTGTCGCGCA 60.357 61.111 8.75 0.00 0.00 6.09
3239 3363 2.357034 TGGAGAAAGGTGTCGCGC 60.357 61.111 0.00 0.00 0.00 6.86
3240 3364 2.383527 GCTGGAGAAAGGTGTCGCG 61.384 63.158 0.00 0.00 0.00 5.87
3241 3365 1.004440 AGCTGGAGAAAGGTGTCGC 60.004 57.895 0.00 0.00 0.00 5.19
3242 3366 0.605589 AGAGCTGGAGAAAGGTGTCG 59.394 55.000 0.00 0.00 0.00 4.35
3243 3367 2.091852 CAGAGCTGGAGAAAGGTGTC 57.908 55.000 0.00 0.00 0.00 3.67
3255 3379 0.032678 ACGAGTGTGAACCAGAGCTG 59.967 55.000 0.00 0.00 0.00 4.24
3256 3380 1.617322 TACGAGTGTGAACCAGAGCT 58.383 50.000 0.00 0.00 0.00 4.09
3257 3381 2.433868 TTACGAGTGTGAACCAGAGC 57.566 50.000 0.00 0.00 0.00 4.09
3258 3382 3.489785 GTGTTTACGAGTGTGAACCAGAG 59.510 47.826 0.00 0.00 42.26 3.35
3259 3383 3.450578 GTGTTTACGAGTGTGAACCAGA 58.549 45.455 0.00 0.00 42.26 3.86
3260 3384 3.854286 GTGTTTACGAGTGTGAACCAG 57.146 47.619 0.00 0.00 42.26 4.00
3273 3397 4.725556 TCACAGAAATGAGCGTGTTTAC 57.274 40.909 0.00 0.00 0.00 2.01
3274 3398 5.743026 TTTCACAGAAATGAGCGTGTTTA 57.257 34.783 0.00 0.00 0.00 2.01
3275 3399 4.630894 TTTCACAGAAATGAGCGTGTTT 57.369 36.364 0.00 0.00 0.00 2.83
3276 3400 4.335315 TCTTTTCACAGAAATGAGCGTGTT 59.665 37.500 4.55 0.00 0.00 3.32
3277 3401 3.876914 TCTTTTCACAGAAATGAGCGTGT 59.123 39.130 4.55 0.00 0.00 4.49
3278 3402 4.472691 TCTTTTCACAGAAATGAGCGTG 57.527 40.909 4.55 0.00 0.00 5.34
3279 3403 5.499139 TTTCTTTTCACAGAAATGAGCGT 57.501 34.783 7.73 0.00 37.77 5.07
3280 3404 6.201517 TCTTTTCTTTTCACAGAAATGAGCG 58.798 36.000 7.37 0.00 41.42 5.03
3281 3405 7.620397 CTCTTTTCTTTTCACAGAAATGAGC 57.380 36.000 18.55 0.00 46.85 4.26
3283 3407 7.338800 AGCTCTTTTCTTTTCACAGAAATGA 57.661 32.000 9.93 9.93 41.42 2.57
3284 3408 9.688592 ATTAGCTCTTTTCTTTTCACAGAAATG 57.311 29.630 0.00 0.80 41.42 2.32
3291 3415 9.704098 CGGTATAATTAGCTCTTTTCTTTTCAC 57.296 33.333 0.00 0.00 0.00 3.18
3292 3416 8.889717 CCGGTATAATTAGCTCTTTTCTTTTCA 58.110 33.333 0.00 0.00 0.00 2.69
3293 3417 7.856398 GCCGGTATAATTAGCTCTTTTCTTTTC 59.144 37.037 1.90 0.00 0.00 2.29
3294 3418 7.201794 GGCCGGTATAATTAGCTCTTTTCTTTT 60.202 37.037 1.90 0.00 0.00 2.27
3295 3419 6.262496 GGCCGGTATAATTAGCTCTTTTCTTT 59.738 38.462 1.90 0.00 0.00 2.52
3296 3420 5.763698 GGCCGGTATAATTAGCTCTTTTCTT 59.236 40.000 1.90 0.00 0.00 2.52
3297 3421 5.306394 GGCCGGTATAATTAGCTCTTTTCT 58.694 41.667 1.90 0.00 0.00 2.52
3298 3422 4.151867 CGGCCGGTATAATTAGCTCTTTTC 59.848 45.833 20.10 0.00 0.00 2.29
3299 3423 4.062991 CGGCCGGTATAATTAGCTCTTTT 58.937 43.478 20.10 0.00 0.00 2.27
3300 3424 3.070590 ACGGCCGGTATAATTAGCTCTTT 59.929 43.478 31.76 0.00 0.00 2.52
3301 3425 2.631545 ACGGCCGGTATAATTAGCTCTT 59.368 45.455 31.76 0.00 0.00 2.85
3302 3426 2.245582 ACGGCCGGTATAATTAGCTCT 58.754 47.619 31.76 0.00 0.00 4.09
3303 3427 2.738013 ACGGCCGGTATAATTAGCTC 57.262 50.000 31.76 0.00 0.00 4.09
3304 3428 2.892852 TGTACGGCCGGTATAATTAGCT 59.107 45.455 31.76 5.83 32.74 3.32
3305 3429 2.989166 GTGTACGGCCGGTATAATTAGC 59.011 50.000 31.76 6.87 32.74 3.09
3306 3430 3.983344 GTGTGTACGGCCGGTATAATTAG 59.017 47.826 31.76 0.00 32.74 1.73
3307 3431 3.549827 CGTGTGTACGGCCGGTATAATTA 60.550 47.826 31.76 7.81 46.23 1.40
3308 3432 2.799207 CGTGTGTACGGCCGGTATAATT 60.799 50.000 31.76 9.01 46.23 1.40
3309 3433 1.269206 CGTGTGTACGGCCGGTATAAT 60.269 52.381 31.76 9.87 46.23 1.28
3310 3434 0.100325 CGTGTGTACGGCCGGTATAA 59.900 55.000 31.76 9.24 46.23 0.98
3311 3435 1.726865 CGTGTGTACGGCCGGTATA 59.273 57.895 31.76 14.50 46.23 1.47
3312 3436 2.491152 CGTGTGTACGGCCGGTAT 59.509 61.111 31.76 11.61 46.23 2.73
3326 3450 0.375454 TTTCGCCACACAAGTTCGTG 59.625 50.000 4.53 4.53 42.81 4.35
3327 3451 1.088306 TTTTCGCCACACAAGTTCGT 58.912 45.000 0.00 0.00 0.00 3.85
3328 3452 2.399396 ATTTTCGCCACACAAGTTCG 57.601 45.000 0.00 0.00 0.00 3.95
3329 3453 6.763303 AAAATATTTTCGCCACACAAGTTC 57.237 33.333 7.64 0.00 0.00 3.01
3330 3454 8.544597 GTTAAAAATATTTTCGCCACACAAGTT 58.455 29.630 13.68 0.00 0.00 2.66
3331 3455 7.707035 TGTTAAAAATATTTTCGCCACACAAGT 59.293 29.630 13.68 0.00 0.00 3.16
3332 3456 8.001549 GTGTTAAAAATATTTTCGCCACACAAG 58.998 33.333 23.56 0.00 32.10 3.16
3333 3457 7.491372 TGTGTTAAAAATATTTTCGCCACACAA 59.509 29.630 26.05 17.65 35.25 3.33
3334 3458 6.978659 TGTGTTAAAAATATTTTCGCCACACA 59.021 30.769 25.32 25.32 35.50 3.72
3335 3459 7.043325 TGTGTGTTAAAAATATTTTCGCCACAC 60.043 33.333 32.41 32.41 43.12 3.82
3336 3460 6.978659 TGTGTGTTAAAAATATTTTCGCCACA 59.021 30.769 22.48 22.48 32.91 4.17
3337 3461 7.396190 TGTGTGTTAAAAATATTTTCGCCAC 57.604 32.000 13.68 17.43 0.00 5.01
3338 3462 8.328864 GTTTGTGTGTTAAAAATATTTTCGCCA 58.671 29.630 13.68 7.81 0.00 5.69
3339 3463 8.544597 AGTTTGTGTGTTAAAAATATTTTCGCC 58.455 29.630 13.68 5.54 0.00 5.54
3340 3464 9.909043 AAGTTTGTGTGTTAAAAATATTTTCGC 57.091 25.926 13.68 8.84 0.00 4.70
3350 3474 9.745880 TCACTTTTGTAAGTTTGTGTGTTAAAA 57.254 25.926 0.00 0.00 41.85 1.52
3351 3475 9.745880 TTCACTTTTGTAAGTTTGTGTGTTAAA 57.254 25.926 0.00 0.00 41.85 1.52
3352 3476 9.745880 TTTCACTTTTGTAAGTTTGTGTGTTAA 57.254 25.926 0.00 0.00 41.85 2.01
3353 3477 9.915629 ATTTCACTTTTGTAAGTTTGTGTGTTA 57.084 25.926 0.00 0.00 41.85 2.41
3354 3478 8.707839 CATTTCACTTTTGTAAGTTTGTGTGTT 58.292 29.630 0.00 0.00 41.85 3.32
3355 3479 7.330700 CCATTTCACTTTTGTAAGTTTGTGTGT 59.669 33.333 0.00 0.00 41.85 3.72
3356 3480 7.330700 ACCATTTCACTTTTGTAAGTTTGTGTG 59.669 33.333 0.00 0.00 41.85 3.82
3357 3481 7.382898 ACCATTTCACTTTTGTAAGTTTGTGT 58.617 30.769 0.00 0.00 41.85 3.72
3358 3482 7.826260 ACCATTTCACTTTTGTAAGTTTGTG 57.174 32.000 0.00 0.00 41.85 3.33
3359 3483 8.840833 AAACCATTTCACTTTTGTAAGTTTGT 57.159 26.923 0.00 0.00 41.85 2.83
3362 3486 9.719355 AGAAAAACCATTTCACTTTTGTAAGTT 57.281 25.926 4.01 0.00 41.85 2.66
3363 3487 9.719355 AAGAAAAACCATTTCACTTTTGTAAGT 57.281 25.926 4.01 0.00 45.40 2.24
3367 3491 7.807433 GCAAAAGAAAAACCATTTCACTTTTGT 59.193 29.630 25.26 8.25 46.79 2.83
3369 3493 7.020602 CGCAAAAGAAAAACCATTTCACTTTT 58.979 30.769 0.00 0.00 40.88 2.27
3370 3494 6.403092 CCGCAAAAGAAAAACCATTTCACTTT 60.403 34.615 4.01 0.00 37.01 2.66
3371 3495 5.064579 CCGCAAAAGAAAAACCATTTCACTT 59.935 36.000 4.01 0.00 31.28 3.16
3372 3496 4.570369 CCGCAAAAGAAAAACCATTTCACT 59.430 37.500 4.01 0.00 0.00 3.41
3373 3497 4.260579 CCCGCAAAAGAAAAACCATTTCAC 60.261 41.667 4.01 0.00 0.00 3.18
3374 3498 3.873952 CCCGCAAAAGAAAAACCATTTCA 59.126 39.130 4.01 0.00 0.00 2.69
3375 3499 3.874543 ACCCGCAAAAGAAAAACCATTTC 59.125 39.130 0.00 0.00 0.00 2.17
3376 3500 3.879998 ACCCGCAAAAGAAAAACCATTT 58.120 36.364 0.00 0.00 0.00 2.32
3377 3501 3.552132 ACCCGCAAAAGAAAAACCATT 57.448 38.095 0.00 0.00 0.00 3.16
3378 3502 3.385111 TGTACCCGCAAAAGAAAAACCAT 59.615 39.130 0.00 0.00 0.00 3.55
3379 3503 2.758979 TGTACCCGCAAAAGAAAAACCA 59.241 40.909 0.00 0.00 0.00 3.67
3380 3504 3.439895 TGTACCCGCAAAAGAAAAACC 57.560 42.857 0.00 0.00 0.00 3.27
3381 3505 4.865925 ACTTTGTACCCGCAAAAGAAAAAC 59.134 37.500 9.02 0.00 37.82 2.43
3382 3506 4.865365 CACTTTGTACCCGCAAAAGAAAAA 59.135 37.500 9.02 0.00 37.82 1.94
3383 3507 4.158025 TCACTTTGTACCCGCAAAAGAAAA 59.842 37.500 9.02 0.00 37.82 2.29
3384 3508 3.695060 TCACTTTGTACCCGCAAAAGAAA 59.305 39.130 9.02 0.00 37.82 2.52
3385 3509 3.280295 TCACTTTGTACCCGCAAAAGAA 58.720 40.909 9.02 0.00 37.82 2.52
3386 3510 2.920524 TCACTTTGTACCCGCAAAAGA 58.079 42.857 9.02 0.00 37.82 2.52
3387 3511 3.701532 TTCACTTTGTACCCGCAAAAG 57.298 42.857 2.08 2.08 37.82 2.27
3388 3512 4.451629 TTTTCACTTTGTACCCGCAAAA 57.548 36.364 0.00 0.00 37.82 2.44
3389 3513 4.657436 ATTTTCACTTTGTACCCGCAAA 57.343 36.364 0.00 0.00 36.93 3.68
3390 3514 5.968528 ATATTTTCACTTTGTACCCGCAA 57.031 34.783 0.00 0.00 0.00 4.85
3391 3515 5.968528 AATATTTTCACTTTGTACCCGCA 57.031 34.783 0.00 0.00 0.00 5.69
3392 3516 6.864165 TCAAAATATTTTCACTTTGTACCCGC 59.136 34.615 10.53 0.00 32.00 6.13
3393 3517 7.061789 GCTCAAAATATTTTCACTTTGTACCCG 59.938 37.037 10.53 0.00 32.00 5.28
3394 3518 7.870445 TGCTCAAAATATTTTCACTTTGTACCC 59.130 33.333 10.53 0.00 32.00 3.69
3395 3519 8.699749 GTGCTCAAAATATTTTCACTTTGTACC 58.300 33.333 17.59 2.25 32.00 3.34
3396 3520 9.243637 TGTGCTCAAAATATTTTCACTTTGTAC 57.756 29.630 22.02 13.83 32.00 2.90
3397 3521 9.243637 GTGTGCTCAAAATATTTTCACTTTGTA 57.756 29.630 22.02 7.79 32.00 2.41
3398 3522 7.763528 TGTGTGCTCAAAATATTTTCACTTTGT 59.236 29.630 22.02 0.00 32.00 2.83
3399 3523 8.129161 TGTGTGCTCAAAATATTTTCACTTTG 57.871 30.769 22.02 9.65 0.00 2.77
3400 3524 8.715191 TTGTGTGCTCAAAATATTTTCACTTT 57.285 26.923 22.02 0.00 0.00 2.66
3401 3525 8.603181 GTTTGTGTGCTCAAAATATTTTCACTT 58.397 29.630 22.02 0.00 38.71 3.16
3402 3526 7.981225 AGTTTGTGTGCTCAAAATATTTTCACT 59.019 29.630 22.02 7.54 38.71 3.41
3403 3527 8.130307 AGTTTGTGTGCTCAAAATATTTTCAC 57.870 30.769 17.86 17.86 38.71 3.18
3404 3528 8.602328 CAAGTTTGTGTGCTCAAAATATTTTCA 58.398 29.630 10.53 3.84 38.71 2.69
3405 3529 7.583762 GCAAGTTTGTGTGCTCAAAATATTTTC 59.416 33.333 10.53 1.24 38.71 2.29
3406 3530 7.065563 TGCAAGTTTGTGTGCTCAAAATATTTT 59.934 29.630 7.64 7.64 41.48 1.82
3407 3531 6.538021 TGCAAGTTTGTGTGCTCAAAATATTT 59.462 30.769 0.00 0.00 41.48 1.40
3408 3532 6.047870 TGCAAGTTTGTGTGCTCAAAATATT 58.952 32.000 0.00 0.00 41.48 1.28
3409 3533 5.599732 TGCAAGTTTGTGTGCTCAAAATAT 58.400 33.333 0.00 0.00 41.48 1.28
3410 3534 5.003692 TGCAAGTTTGTGTGCTCAAAATA 57.996 34.783 0.00 0.00 41.48 1.40
3411 3535 3.859443 TGCAAGTTTGTGTGCTCAAAAT 58.141 36.364 0.00 0.00 41.48 1.82
3412 3536 3.309961 TGCAAGTTTGTGTGCTCAAAA 57.690 38.095 1.68 0.00 41.48 2.44
3413 3537 3.309961 TTGCAAGTTTGTGTGCTCAAA 57.690 38.095 0.00 0.00 41.48 2.69
3414 3538 3.309961 TTTGCAAGTTTGTGTGCTCAA 57.690 38.095 0.00 0.00 41.48 3.02
3415 3539 2.992543 GTTTTGCAAGTTTGTGTGCTCA 59.007 40.909 0.00 0.00 41.48 4.26
3416 3540 2.027926 CGTTTTGCAAGTTTGTGTGCTC 59.972 45.455 0.00 0.00 41.48 4.26
3417 3541 1.991965 CGTTTTGCAAGTTTGTGTGCT 59.008 42.857 0.00 0.00 41.48 4.40
3418 3542 1.724082 ACGTTTTGCAAGTTTGTGTGC 59.276 42.857 0.00 0.00 41.29 4.57
3419 3543 2.983136 TCACGTTTTGCAAGTTTGTGTG 59.017 40.909 17.15 13.14 0.00 3.82
3420 3544 3.290308 TCACGTTTTGCAAGTTTGTGT 57.710 38.095 17.15 3.96 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.