Multiple sequence alignment - TraesCS5D01G403900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G403900 chr5D 100.000 3593 0 0 1 3593 469283701 469287293 0.000000e+00 6636.0
1 TraesCS5D01G403900 chr5D 82.640 553 86 8 1583 2133 469242702 469243246 6.980000e-132 481.0
2 TraesCS5D01G403900 chr5D 83.460 526 75 7 1611 2133 469236122 469236638 2.510000e-131 479.0
3 TraesCS5D01G403900 chr5D 82.432 518 58 14 997 1482 469235387 469235903 4.290000e-114 422.0
4 TraesCS5D01G403900 chr5D 82.012 517 61 13 986 1480 469241871 469242377 9.280000e-111 411.0
5 TraesCS5D01G403900 chr5D 79.764 509 88 12 1628 2133 469245316 469245812 4.410000e-94 355.0
6 TraesCS5D01G403900 chr5D 79.887 532 63 24 988 1495 469269529 469270040 2.050000e-92 350.0
7 TraesCS5D01G403900 chr5B 91.311 1381 81 12 1502 2852 576257144 576258515 0.000000e+00 1849.0
8 TraesCS5D01G403900 chr5B 96.986 564 17 0 936 1499 576256492 576257055 0.000000e+00 948.0
9 TraesCS5D01G403900 chr5B 94.431 413 18 5 34 444 576255884 576256293 6.550000e-177 630.0
10 TraesCS5D01G403900 chr5B 84.387 538 74 8 1613 2147 576245117 576245647 1.480000e-143 520.0
11 TraesCS5D01G403900 chr5B 82.136 515 62 14 997 1482 576213456 576213969 7.180000e-112 414.0
12 TraesCS5D01G403900 chr5B 80.747 509 83 13 1628 2133 576161361 576161857 2.020000e-102 383.0
13 TraesCS5D01G403900 chr5B 81.070 486 60 16 986 1449 576221441 576221916 3.410000e-95 359.0
14 TraesCS5D01G403900 chr5B 95.364 151 2 2 445 594 576256349 576256495 6.000000e-58 235.0
15 TraesCS5D01G403900 chr5B 97.917 48 1 0 3306 3353 576258566 576258613 2.300000e-12 84.2
16 TraesCS5D01G403900 chr5A 91.254 1372 92 12 1502 2851 589579657 589581022 0.000000e+00 1844.0
17 TraesCS5D01G403900 chr5A 88.079 755 48 16 2844 3567 589582304 589583047 0.000000e+00 857.0
18 TraesCS5D01G403900 chr5A 92.374 577 25 10 936 1499 589579045 589579615 0.000000e+00 804.0
19 TraesCS5D01G403900 chr5A 84.151 530 75 7 1609 2135 589337426 589337949 4.140000e-139 505.0
20 TraesCS5D01G403900 chr5A 83.799 537 73 12 1613 2144 589372693 589373220 6.930000e-137 497.0
21 TraesCS5D01G403900 chr5A 83.977 518 57 8 987 1482 589315593 589316106 1.170000e-129 473.0
22 TraesCS5D01G403900 chr5A 80.608 526 63 22 995 1499 589366362 589366869 1.580000e-98 370.0
23 TraesCS5D01G403900 chr5A 86.705 346 22 10 113 448 589577436 589577767 2.640000e-96 363.0
24 TraesCS5D01G403900 chr5A 83.721 344 54 2 2238 2580 589316348 589316690 1.240000e-84 324.0
25 TraesCS5D01G403900 chr5A 100.000 43 0 0 485 527 589578944 589578986 2.970000e-11 80.5
26 TraesCS5D01G403900 chr7D 84.898 490 60 12 997 1482 160015642 160015163 1.940000e-132 483.0
27 TraesCS5D01G403900 chr7B 82.596 339 51 5 2241 2571 120790787 120790449 3.510000e-75 292.0
28 TraesCS5D01G403900 chr7A 97.143 35 1 0 2708 2742 115203599 115203633 3.870000e-05 60.2
29 TraesCS5D01G403900 chr3D 97.143 35 1 0 2708 2742 549330686 549330720 3.870000e-05 60.2
30 TraesCS5D01G403900 chr1D 94.286 35 2 0 2708 2742 99458421 99458455 2.000000e-03 54.7
31 TraesCS5D01G403900 chr4A 100.000 28 0 0 2704 2731 674339404 674339377 6.000000e-03 52.8
32 TraesCS5D01G403900 chr3B 92.105 38 2 1 2708 2745 332836885 332836849 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G403900 chr5D 469283701 469287293 3592 False 6636.000000 6636 100.0000 1 3593 1 chr5D.!!$F2 3592
1 TraesCS5D01G403900 chr5D 469235387 469236638 1251 False 450.500000 479 82.9460 997 2133 2 chr5D.!!$F3 1136
2 TraesCS5D01G403900 chr5D 469241871 469245812 3941 False 415.666667 481 81.4720 986 2133 3 chr5D.!!$F4 1147
3 TraesCS5D01G403900 chr5D 469269529 469270040 511 False 350.000000 350 79.8870 988 1495 1 chr5D.!!$F1 507
4 TraesCS5D01G403900 chr5B 576255884 576258613 2729 False 749.240000 1849 95.2018 34 3353 5 chr5B.!!$F5 3319
5 TraesCS5D01G403900 chr5B 576245117 576245647 530 False 520.000000 520 84.3870 1613 2147 1 chr5B.!!$F4 534
6 TraesCS5D01G403900 chr5B 576213456 576213969 513 False 414.000000 414 82.1360 997 1482 1 chr5B.!!$F2 485
7 TraesCS5D01G403900 chr5A 589577436 589583047 5611 False 789.700000 1844 91.6824 113 3567 5 chr5A.!!$F5 3454
8 TraesCS5D01G403900 chr5A 589337426 589337949 523 False 505.000000 505 84.1510 1609 2135 1 chr5A.!!$F1 526
9 TraesCS5D01G403900 chr5A 589372693 589373220 527 False 497.000000 497 83.7990 1613 2144 1 chr5A.!!$F3 531
10 TraesCS5D01G403900 chr5A 589315593 589316690 1097 False 398.500000 473 83.8490 987 2580 2 chr5A.!!$F4 1593
11 TraesCS5D01G403900 chr5A 589366362 589366869 507 False 370.000000 370 80.6080 995 1499 1 chr5A.!!$F2 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 2054 0.044855 AGAACCCTAGCCACCCATCT 59.955 55.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2731 4612 0.31812 CCATCCTGCCAAAAACGCTT 59.682 50.0 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.467566 GACCCAAATACGTGGTCAGT 57.532 50.000 15.16 0.00 46.29 3.41
21 22 3.598019 GACCCAAATACGTGGTCAGTA 57.402 47.619 15.16 0.00 46.29 2.74
22 23 3.929094 GACCCAAATACGTGGTCAGTAA 58.071 45.455 15.16 0.00 46.29 2.24
23 24 4.317488 GACCCAAATACGTGGTCAGTAAA 58.683 43.478 15.16 0.00 46.29 2.01
24 25 4.716794 ACCCAAATACGTGGTCAGTAAAA 58.283 39.130 0.00 0.00 36.90 1.52
25 26 5.131784 ACCCAAATACGTGGTCAGTAAAAA 58.868 37.500 0.00 0.00 36.90 1.94
53 54 3.550842 CCAAACTAGCTCACAAAACAGCC 60.551 47.826 0.00 0.00 36.17 4.85
55 56 1.142870 ACTAGCTCACAAAACAGCCCA 59.857 47.619 0.00 0.00 36.17 5.36
66 67 5.006941 CACAAAACAGCCCATGAAAGAAAAG 59.993 40.000 0.00 0.00 0.00 2.27
69 70 2.901839 ACAGCCCATGAAAGAAAAGCAT 59.098 40.909 0.00 0.00 0.00 3.79
85 86 5.717078 AAAGCATGAATCTCAAAGCAGAA 57.283 34.783 0.00 0.00 35.02 3.02
104 105 8.679288 AGCAGAAATCAATTGTAAAAAGATCG 57.321 30.769 5.13 0.00 0.00 3.69
136 137 7.290118 CCAAAATTAATTTTTCAGGCGACTTG 58.710 34.615 20.92 8.22 36.79 3.16
233 238 1.817941 CGTTAGGTTCCATGGCCGG 60.818 63.158 6.96 0.00 0.00 6.13
256 261 3.565482 GGTGTACACCGATCGATACCTAA 59.435 47.826 28.55 0.00 42.29 2.69
297 305 5.041191 AGTTTCCATAGCTGTCCTATTGG 57.959 43.478 0.00 0.00 34.49 3.16
299 307 2.338809 TCCATAGCTGTCCTATTGGGG 58.661 52.381 0.00 0.00 34.49 4.96
300 308 2.057922 CCATAGCTGTCCTATTGGGGT 58.942 52.381 0.00 0.00 34.49 4.95
537 1713 2.223479 GCCGACATCTGAACTCTCTCTC 60.223 54.545 0.00 0.00 0.00 3.20
538 1714 3.278574 CCGACATCTGAACTCTCTCTCT 58.721 50.000 0.00 0.00 0.00 3.10
539 1715 3.312421 CCGACATCTGAACTCTCTCTCTC 59.688 52.174 0.00 0.00 0.00 3.20
540 1716 4.191544 CGACATCTGAACTCTCTCTCTCT 58.808 47.826 0.00 0.00 0.00 3.10
581 1757 2.354821 CCGGTACTATTTGCCTTCAAGC 59.645 50.000 0.00 0.00 33.12 4.01
590 1766 0.603707 TGCCTTCAAGCTCCAGTTCG 60.604 55.000 0.00 0.00 0.00 3.95
591 1767 0.320771 GCCTTCAAGCTCCAGTTCGA 60.321 55.000 0.00 0.00 0.00 3.71
592 1768 1.433534 CCTTCAAGCTCCAGTTCGAC 58.566 55.000 0.00 0.00 0.00 4.20
593 1769 1.433534 CTTCAAGCTCCAGTTCGACC 58.566 55.000 0.00 0.00 0.00 4.79
594 1770 1.001406 CTTCAAGCTCCAGTTCGACCT 59.999 52.381 0.00 0.00 0.00 3.85
595 1771 1.048601 TCAAGCTCCAGTTCGACCTT 58.951 50.000 0.00 0.00 0.00 3.50
596 1772 1.151668 CAAGCTCCAGTTCGACCTTG 58.848 55.000 0.00 0.00 0.00 3.61
597 1773 0.759346 AAGCTCCAGTTCGACCTTGT 59.241 50.000 0.00 0.00 0.00 3.16
598 1774 0.759346 AGCTCCAGTTCGACCTTGTT 59.241 50.000 0.00 0.00 0.00 2.83
599 1775 1.968493 AGCTCCAGTTCGACCTTGTTA 59.032 47.619 0.00 0.00 0.00 2.41
600 1776 2.067013 GCTCCAGTTCGACCTTGTTAC 58.933 52.381 0.00 0.00 0.00 2.50
601 1777 2.325761 CTCCAGTTCGACCTTGTTACG 58.674 52.381 0.00 0.00 0.00 3.18
602 1778 1.955778 TCCAGTTCGACCTTGTTACGA 59.044 47.619 0.00 0.00 0.00 3.43
603 1779 2.559668 TCCAGTTCGACCTTGTTACGAT 59.440 45.455 0.00 0.00 36.02 3.73
604 1780 2.921754 CCAGTTCGACCTTGTTACGATC 59.078 50.000 0.00 0.00 36.02 3.69
605 1781 2.921754 CAGTTCGACCTTGTTACGATCC 59.078 50.000 0.00 0.00 36.02 3.36
606 1782 2.094338 AGTTCGACCTTGTTACGATCCC 60.094 50.000 0.00 0.00 36.02 3.85
607 1783 1.843368 TCGACCTTGTTACGATCCCT 58.157 50.000 0.00 0.00 0.00 4.20
608 1784 1.475280 TCGACCTTGTTACGATCCCTG 59.525 52.381 0.00 0.00 0.00 4.45
609 1785 1.653151 GACCTTGTTACGATCCCTGC 58.347 55.000 0.00 0.00 0.00 4.85
610 1786 0.252197 ACCTTGTTACGATCCCTGCC 59.748 55.000 0.00 0.00 0.00 4.85
611 1787 0.463833 CCTTGTTACGATCCCTGCCC 60.464 60.000 0.00 0.00 0.00 5.36
612 1788 0.810031 CTTGTTACGATCCCTGCCCG 60.810 60.000 0.00 0.00 0.00 6.13
613 1789 2.588034 GTTACGATCCCTGCCCGC 60.588 66.667 0.00 0.00 0.00 6.13
614 1790 4.215742 TTACGATCCCTGCCCGCG 62.216 66.667 0.00 0.00 0.00 6.46
630 1806 3.775654 CGGCCCACCTGAGGAGAC 61.776 72.222 4.99 0.00 0.00 3.36
631 1807 3.775654 GGCCCACCTGAGGAGACG 61.776 72.222 4.99 0.00 0.00 4.18
632 1808 3.775654 GCCCACCTGAGGAGACGG 61.776 72.222 4.99 0.00 0.00 4.79
633 1809 3.775654 CCCACCTGAGGAGACGGC 61.776 72.222 4.99 0.00 0.00 5.68
634 1810 4.135153 CCACCTGAGGAGACGGCG 62.135 72.222 4.99 4.80 0.00 6.46
635 1811 4.803426 CACCTGAGGAGACGGCGC 62.803 72.222 4.99 0.00 0.00 6.53
638 1814 4.504916 CTGAGGAGACGGCGCCAG 62.505 72.222 28.98 21.29 36.29 4.85
652 1828 3.406200 CCAGGCCCACCAGAGGAG 61.406 72.222 0.00 0.00 39.06 3.69
653 1829 2.284921 CAGGCCCACCAGAGGAGA 60.285 66.667 0.00 0.00 39.06 3.71
654 1830 1.920325 CAGGCCCACCAGAGGAGAA 60.920 63.158 0.00 0.00 39.06 2.87
655 1831 1.614824 AGGCCCACCAGAGGAGAAG 60.615 63.158 0.00 0.00 39.06 2.85
656 1832 2.674220 GGCCCACCAGAGGAGAAGG 61.674 68.421 0.00 0.00 35.26 3.46
657 1833 2.993853 CCCACCAGAGGAGAAGGC 59.006 66.667 0.00 0.00 0.00 4.35
658 1834 2.581354 CCACCAGAGGAGAAGGCG 59.419 66.667 0.00 0.00 0.00 5.52
659 1835 2.125350 CACCAGAGGAGAAGGCGC 60.125 66.667 0.00 0.00 0.00 6.53
660 1836 2.604686 ACCAGAGGAGAAGGCGCA 60.605 61.111 10.83 0.00 0.00 6.09
661 1837 2.217038 ACCAGAGGAGAAGGCGCAA 61.217 57.895 10.83 0.00 0.00 4.85
662 1838 1.449246 CCAGAGGAGAAGGCGCAAG 60.449 63.158 10.83 0.00 43.44 4.01
663 1839 1.449246 CAGAGGAGAAGGCGCAAGG 60.449 63.158 10.83 0.00 38.28 3.61
673 1849 4.404654 GCGCAAGGCCCAACGAAG 62.405 66.667 12.58 0.00 34.80 3.79
674 1850 4.404654 CGCAAGGCCCAACGAAGC 62.405 66.667 0.00 0.00 0.00 3.86
675 1851 4.404654 GCAAGGCCCAACGAAGCG 62.405 66.667 0.00 0.00 0.00 4.68
676 1852 4.404654 CAAGGCCCAACGAAGCGC 62.405 66.667 0.00 0.00 0.00 5.92
683 1859 3.399770 CAACGAAGCGCGACCGAA 61.400 61.111 21.70 0.00 44.57 4.30
684 1860 3.103911 AACGAAGCGCGACCGAAG 61.104 61.111 21.70 0.00 44.57 3.79
707 1883 4.840005 GCACTCGCTACCCAGCCC 62.840 72.222 0.00 0.00 45.64 5.19
708 1884 3.390521 CACTCGCTACCCAGCCCA 61.391 66.667 0.00 0.00 45.64 5.36
709 1885 2.365635 ACTCGCTACCCAGCCCAT 60.366 61.111 0.00 0.00 45.64 4.00
710 1886 2.423446 CTCGCTACCCAGCCCATC 59.577 66.667 0.00 0.00 45.64 3.51
711 1887 2.364973 TCGCTACCCAGCCCATCA 60.365 61.111 0.00 0.00 45.64 3.07
712 1888 2.109799 CGCTACCCAGCCCATCAG 59.890 66.667 0.00 0.00 45.64 2.90
713 1889 2.735772 CGCTACCCAGCCCATCAGT 61.736 63.158 0.00 0.00 45.64 3.41
714 1890 1.399744 CGCTACCCAGCCCATCAGTA 61.400 60.000 0.00 0.00 45.64 2.74
715 1891 0.106894 GCTACCCAGCCCATCAGTAC 59.893 60.000 0.00 0.00 42.37 2.73
716 1892 0.389391 CTACCCAGCCCATCAGTACG 59.611 60.000 0.00 0.00 0.00 3.67
717 1893 0.324923 TACCCAGCCCATCAGTACGT 60.325 55.000 0.00 0.00 0.00 3.57
718 1894 0.324923 ACCCAGCCCATCAGTACGTA 60.325 55.000 0.00 0.00 0.00 3.57
719 1895 0.828022 CCCAGCCCATCAGTACGTAA 59.172 55.000 0.00 0.00 0.00 3.18
720 1896 1.472728 CCCAGCCCATCAGTACGTAAC 60.473 57.143 0.00 0.00 0.00 2.50
721 1897 1.472728 CCAGCCCATCAGTACGTAACC 60.473 57.143 0.00 0.00 0.00 2.85
722 1898 1.480954 CAGCCCATCAGTACGTAACCT 59.519 52.381 0.00 0.00 0.00 3.50
723 1899 2.691526 CAGCCCATCAGTACGTAACCTA 59.308 50.000 0.00 0.00 0.00 3.08
724 1900 2.957006 AGCCCATCAGTACGTAACCTAG 59.043 50.000 0.00 0.00 0.00 3.02
725 1901 2.545322 GCCCATCAGTACGTAACCTAGC 60.545 54.545 0.00 0.00 0.00 3.42
726 1902 2.035576 CCCATCAGTACGTAACCTAGCC 59.964 54.545 0.00 0.00 0.00 3.93
727 1903 2.691526 CCATCAGTACGTAACCTAGCCA 59.308 50.000 0.00 0.00 0.00 4.75
728 1904 3.243434 CCATCAGTACGTAACCTAGCCAG 60.243 52.174 0.00 0.00 0.00 4.85
729 1905 3.077484 TCAGTACGTAACCTAGCCAGT 57.923 47.619 0.00 0.00 0.00 4.00
730 1906 4.220693 TCAGTACGTAACCTAGCCAGTA 57.779 45.455 0.00 0.00 0.00 2.74
731 1907 3.941483 TCAGTACGTAACCTAGCCAGTAC 59.059 47.826 0.00 0.00 35.88 2.73
732 1908 3.944015 CAGTACGTAACCTAGCCAGTACT 59.056 47.826 0.00 0.00 43.54 2.73
733 1909 4.397417 CAGTACGTAACCTAGCCAGTACTT 59.603 45.833 0.00 0.00 41.65 2.24
734 1910 5.586243 CAGTACGTAACCTAGCCAGTACTTA 59.414 44.000 0.00 0.00 41.65 2.24
735 1911 6.094048 CAGTACGTAACCTAGCCAGTACTTAA 59.906 42.308 0.00 0.00 41.65 1.85
736 1912 5.573337 ACGTAACCTAGCCAGTACTTAAG 57.427 43.478 0.00 0.00 0.00 1.85
737 1913 4.142293 ACGTAACCTAGCCAGTACTTAAGC 60.142 45.833 1.29 0.00 0.00 3.09
738 1914 4.097589 CGTAACCTAGCCAGTACTTAAGCT 59.902 45.833 14.42 14.42 39.37 3.74
739 1915 4.473477 AACCTAGCCAGTACTTAAGCTG 57.527 45.455 17.91 2.78 36.79 4.24
744 1920 1.739067 CCAGTACTTAAGCTGGGTGC 58.261 55.000 17.19 0.00 46.27 5.01
745 1921 1.679032 CCAGTACTTAAGCTGGGTGCC 60.679 57.143 17.19 0.00 46.27 5.01
746 1922 1.279271 CAGTACTTAAGCTGGGTGCCT 59.721 52.381 1.29 0.00 44.23 4.75
747 1923 1.555533 AGTACTTAAGCTGGGTGCCTC 59.444 52.381 1.29 0.00 44.23 4.70
748 1924 1.278127 GTACTTAAGCTGGGTGCCTCA 59.722 52.381 1.29 0.00 44.23 3.86
749 1925 0.771127 ACTTAAGCTGGGTGCCTCAA 59.229 50.000 1.29 0.00 44.23 3.02
750 1926 1.144913 ACTTAAGCTGGGTGCCTCAAA 59.855 47.619 1.29 0.00 44.23 2.69
751 1927 2.238521 CTTAAGCTGGGTGCCTCAAAA 58.761 47.619 0.00 0.00 44.23 2.44
752 1928 2.373335 TAAGCTGGGTGCCTCAAAAA 57.627 45.000 0.00 0.00 44.23 1.94
785 1961 1.534729 AAACTTAAGCTGGGAAGGCG 58.465 50.000 1.29 0.00 34.52 5.52
786 1962 0.690762 AACTTAAGCTGGGAAGGCGA 59.309 50.000 1.29 0.00 34.52 5.54
787 1963 0.250513 ACTTAAGCTGGGAAGGCGAG 59.749 55.000 1.29 0.00 34.52 5.03
788 1964 0.537188 CTTAAGCTGGGAAGGCGAGA 59.463 55.000 0.00 0.00 34.52 4.04
789 1965 0.537188 TTAAGCTGGGAAGGCGAGAG 59.463 55.000 0.00 0.00 34.52 3.20
790 1966 1.330655 TAAGCTGGGAAGGCGAGAGG 61.331 60.000 0.00 0.00 34.52 3.69
791 1967 4.168291 GCTGGGAAGGCGAGAGGG 62.168 72.222 0.00 0.00 0.00 4.30
792 1968 2.364317 CTGGGAAGGCGAGAGGGA 60.364 66.667 0.00 0.00 0.00 4.20
793 1969 1.990060 CTGGGAAGGCGAGAGGGAA 60.990 63.158 0.00 0.00 0.00 3.97
794 1970 1.965754 CTGGGAAGGCGAGAGGGAAG 61.966 65.000 0.00 0.00 0.00 3.46
795 1971 2.736826 GGGAAGGCGAGAGGGAAGG 61.737 68.421 0.00 0.00 0.00 3.46
796 1972 2.188207 GAAGGCGAGAGGGAAGGC 59.812 66.667 0.00 0.00 0.00 4.35
797 1973 2.607750 AAGGCGAGAGGGAAGGCA 60.608 61.111 0.00 0.00 0.00 4.75
798 1974 2.585791 GAAGGCGAGAGGGAAGGCAG 62.586 65.000 0.00 0.00 0.00 4.85
799 1975 4.168291 GGCGAGAGGGAAGGCAGG 62.168 72.222 0.00 0.00 0.00 4.85
800 1976 4.847444 GCGAGAGGGAAGGCAGGC 62.847 72.222 0.00 0.00 0.00 4.85
801 1977 3.393970 CGAGAGGGAAGGCAGGCA 61.394 66.667 0.00 0.00 0.00 4.75
802 1978 2.588989 GAGAGGGAAGGCAGGCAG 59.411 66.667 0.00 0.00 0.00 4.85
803 1979 1.992277 GAGAGGGAAGGCAGGCAGA 60.992 63.158 0.00 0.00 0.00 4.26
804 1980 1.970352 GAGAGGGAAGGCAGGCAGAG 61.970 65.000 0.00 0.00 0.00 3.35
805 1981 1.992277 GAGGGAAGGCAGGCAGAGA 60.992 63.158 0.00 0.00 0.00 3.10
806 1982 2.250741 GAGGGAAGGCAGGCAGAGAC 62.251 65.000 0.00 0.00 0.00 3.36
807 1983 2.125350 GGAAGGCAGGCAGAGACG 60.125 66.667 0.00 0.00 0.00 4.18
808 1984 2.650116 GGAAGGCAGGCAGAGACGA 61.650 63.158 0.00 0.00 0.00 4.20
809 1985 1.153667 GAAGGCAGGCAGAGACGAG 60.154 63.158 0.00 0.00 0.00 4.18
810 1986 1.599606 GAAGGCAGGCAGAGACGAGA 61.600 60.000 0.00 0.00 0.00 4.04
811 1987 1.882989 AAGGCAGGCAGAGACGAGAC 61.883 60.000 0.00 0.00 0.00 3.36
812 1988 2.202544 GCAGGCAGAGACGAGACG 60.203 66.667 0.00 0.00 0.00 4.18
813 1989 2.691771 GCAGGCAGAGACGAGACGA 61.692 63.158 0.00 0.00 0.00 4.20
814 1990 1.135731 CAGGCAGAGACGAGACGAC 59.864 63.158 0.00 0.00 0.00 4.34
815 1991 2.041686 AGGCAGAGACGAGACGACC 61.042 63.158 0.00 0.00 0.00 4.79
816 1992 2.041686 GGCAGAGACGAGACGACCT 61.042 63.158 0.00 0.00 0.00 3.85
817 1993 1.135731 GCAGAGACGAGACGACCTG 59.864 63.158 0.00 0.00 0.00 4.00
818 1994 1.797441 CAGAGACGAGACGACCTGG 59.203 63.158 0.00 0.00 0.00 4.45
819 1995 2.041686 AGAGACGAGACGACCTGGC 61.042 63.158 0.00 0.00 0.00 4.85
820 1996 3.384014 GAGACGAGACGACCTGGCG 62.384 68.421 8.60 8.60 37.29 5.69
821 1997 4.477975 GACGAGACGACCTGGCGG 62.478 72.222 13.50 0.00 35.12 6.13
835 2011 4.657824 GCGGCGGCGGCTATTCTA 62.658 66.667 33.02 0.00 39.81 2.10
836 2012 2.261671 CGGCGGCGGCTATTCTAT 59.738 61.111 30.65 0.00 39.81 1.98
837 2013 1.805945 CGGCGGCGGCTATTCTATC 60.806 63.158 30.65 0.00 39.81 2.08
838 2014 1.448013 GGCGGCGGCTATTCTATCC 60.448 63.158 27.22 1.10 39.81 2.59
839 2015 1.448013 GCGGCGGCTATTCTATCCC 60.448 63.158 9.78 0.00 35.83 3.85
840 2016 1.218316 CGGCGGCTATTCTATCCCC 59.782 63.158 7.61 0.00 0.00 4.81
841 2017 1.258445 CGGCGGCTATTCTATCCCCT 61.258 60.000 7.61 0.00 0.00 4.79
842 2018 0.984995 GGCGGCTATTCTATCCCCTT 59.015 55.000 0.00 0.00 0.00 3.95
843 2019 1.351350 GGCGGCTATTCTATCCCCTTT 59.649 52.381 0.00 0.00 0.00 3.11
844 2020 2.224793 GGCGGCTATTCTATCCCCTTTT 60.225 50.000 0.00 0.00 0.00 2.27
845 2021 3.075148 GCGGCTATTCTATCCCCTTTTC 58.925 50.000 0.00 0.00 0.00 2.29
846 2022 3.676093 CGGCTATTCTATCCCCTTTTCC 58.324 50.000 0.00 0.00 0.00 3.13
847 2023 3.328050 CGGCTATTCTATCCCCTTTTCCT 59.672 47.826 0.00 0.00 0.00 3.36
848 2024 4.563786 CGGCTATTCTATCCCCTTTTCCTC 60.564 50.000 0.00 0.00 0.00 3.71
849 2025 4.599676 GGCTATTCTATCCCCTTTTCCTCT 59.400 45.833 0.00 0.00 0.00 3.69
850 2026 5.073827 GGCTATTCTATCCCCTTTTCCTCTT 59.926 44.000 0.00 0.00 0.00 2.85
851 2027 6.410970 GGCTATTCTATCCCCTTTTCCTCTTT 60.411 42.308 0.00 0.00 0.00 2.52
852 2028 6.712998 GCTATTCTATCCCCTTTTCCTCTTTC 59.287 42.308 0.00 0.00 0.00 2.62
853 2029 6.917208 ATTCTATCCCCTTTTCCTCTTTCT 57.083 37.500 0.00 0.00 0.00 2.52
854 2030 5.959583 TCTATCCCCTTTTCCTCTTTCTC 57.040 43.478 0.00 0.00 0.00 2.87
855 2031 5.604752 TCTATCCCCTTTTCCTCTTTCTCT 58.395 41.667 0.00 0.00 0.00 3.10
856 2032 4.582973 ATCCCCTTTTCCTCTTTCTCTG 57.417 45.455 0.00 0.00 0.00 3.35
857 2033 3.327439 TCCCCTTTTCCTCTTTCTCTGT 58.673 45.455 0.00 0.00 0.00 3.41
858 2034 3.722101 TCCCCTTTTCCTCTTTCTCTGTT 59.278 43.478 0.00 0.00 0.00 3.16
859 2035 4.911522 TCCCCTTTTCCTCTTTCTCTGTTA 59.088 41.667 0.00 0.00 0.00 2.41
860 2036 5.013183 TCCCCTTTTCCTCTTTCTCTGTTAG 59.987 44.000 0.00 0.00 0.00 2.34
861 2037 5.013183 CCCCTTTTCCTCTTTCTCTGTTAGA 59.987 44.000 0.00 0.00 0.00 2.10
862 2038 6.465894 CCCCTTTTCCTCTTTCTCTGTTAGAA 60.466 42.308 0.00 0.00 42.62 2.10
863 2039 6.428465 CCCTTTTCCTCTTTCTCTGTTAGAAC 59.572 42.308 0.00 0.00 44.02 3.01
864 2040 6.428465 CCTTTTCCTCTTTCTCTGTTAGAACC 59.572 42.308 0.00 0.00 44.02 3.62
865 2041 5.485209 TTCCTCTTTCTCTGTTAGAACCC 57.515 43.478 0.00 0.00 44.02 4.11
866 2042 4.753186 TCCTCTTTCTCTGTTAGAACCCT 58.247 43.478 0.00 0.00 44.02 4.34
867 2043 5.900437 TCCTCTTTCTCTGTTAGAACCCTA 58.100 41.667 0.00 0.00 44.02 3.53
868 2044 5.952947 TCCTCTTTCTCTGTTAGAACCCTAG 59.047 44.000 0.00 0.00 44.02 3.02
869 2045 5.394773 CCTCTTTCTCTGTTAGAACCCTAGC 60.395 48.000 0.00 0.00 44.02 3.42
870 2046 4.466726 TCTTTCTCTGTTAGAACCCTAGCC 59.533 45.833 0.00 0.00 44.02 3.93
871 2047 3.468071 TCTCTGTTAGAACCCTAGCCA 57.532 47.619 0.00 0.00 0.00 4.75
872 2048 3.097614 TCTCTGTTAGAACCCTAGCCAC 58.902 50.000 0.00 0.00 0.00 5.01
873 2049 2.168728 CTCTGTTAGAACCCTAGCCACC 59.831 54.545 0.00 0.00 0.00 4.61
874 2050 1.209747 CTGTTAGAACCCTAGCCACCC 59.790 57.143 0.00 0.00 0.00 4.61
875 2051 1.282382 GTTAGAACCCTAGCCACCCA 58.718 55.000 0.00 0.00 0.00 4.51
876 2052 1.844497 GTTAGAACCCTAGCCACCCAT 59.156 52.381 0.00 0.00 0.00 4.00
877 2053 1.802553 TAGAACCCTAGCCACCCATC 58.197 55.000 0.00 0.00 0.00 3.51
878 2054 0.044855 AGAACCCTAGCCACCCATCT 59.955 55.000 0.00 0.00 0.00 2.90
879 2055 0.919710 GAACCCTAGCCACCCATCTT 59.080 55.000 0.00 0.00 0.00 2.40
880 2056 0.919710 AACCCTAGCCACCCATCTTC 59.080 55.000 0.00 0.00 0.00 2.87
881 2057 0.044855 ACCCTAGCCACCCATCTTCT 59.955 55.000 0.00 0.00 0.00 2.85
882 2058 1.294068 ACCCTAGCCACCCATCTTCTA 59.706 52.381 0.00 0.00 0.00 2.10
883 2059 2.293586 ACCCTAGCCACCCATCTTCTAA 60.294 50.000 0.00 0.00 0.00 2.10
884 2060 2.777692 CCCTAGCCACCCATCTTCTAAA 59.222 50.000 0.00 0.00 0.00 1.85
885 2061 3.395941 CCCTAGCCACCCATCTTCTAAAT 59.604 47.826 0.00 0.00 0.00 1.40
886 2062 4.141158 CCCTAGCCACCCATCTTCTAAATT 60.141 45.833 0.00 0.00 0.00 1.82
887 2063 5.066593 CCTAGCCACCCATCTTCTAAATTC 58.933 45.833 0.00 0.00 0.00 2.17
888 2064 3.545703 AGCCACCCATCTTCTAAATTCG 58.454 45.455 0.00 0.00 0.00 3.34
889 2065 3.054361 AGCCACCCATCTTCTAAATTCGT 60.054 43.478 0.00 0.00 0.00 3.85
890 2066 3.065371 GCCACCCATCTTCTAAATTCGTG 59.935 47.826 0.00 0.00 0.00 4.35
891 2067 4.261801 CCACCCATCTTCTAAATTCGTGT 58.738 43.478 0.00 0.00 0.00 4.49
892 2068 5.424757 CCACCCATCTTCTAAATTCGTGTA 58.575 41.667 0.00 0.00 0.00 2.90
893 2069 5.878116 CCACCCATCTTCTAAATTCGTGTAA 59.122 40.000 0.00 0.00 0.00 2.41
894 2070 6.542370 CCACCCATCTTCTAAATTCGTGTAAT 59.458 38.462 0.00 0.00 0.00 1.89
895 2071 7.254795 CCACCCATCTTCTAAATTCGTGTAATC 60.255 40.741 0.00 0.00 0.00 1.75
896 2072 7.279981 CACCCATCTTCTAAATTCGTGTAATCA 59.720 37.037 0.00 0.00 0.00 2.57
897 2073 7.495934 ACCCATCTTCTAAATTCGTGTAATCAG 59.504 37.037 0.00 0.00 0.00 2.90
898 2074 7.710907 CCCATCTTCTAAATTCGTGTAATCAGA 59.289 37.037 0.00 0.00 0.00 3.27
899 2075 9.265901 CCATCTTCTAAATTCGTGTAATCAGAT 57.734 33.333 0.00 0.00 0.00 2.90
904 2080 9.653287 TTCTAAATTCGTGTAATCAGATCTTGT 57.347 29.630 0.00 0.00 0.00 3.16
908 2084 9.599866 AAATTCGTGTAATCAGATCTTGTATGA 57.400 29.630 0.00 0.00 31.64 2.15
909 2085 9.599866 AATTCGTGTAATCAGATCTTGTATGAA 57.400 29.630 0.00 0.00 30.72 2.57
910 2086 7.987268 TCGTGTAATCAGATCTTGTATGAAC 57.013 36.000 0.00 0.00 30.72 3.18
911 2087 7.772166 TCGTGTAATCAGATCTTGTATGAACT 58.228 34.615 0.00 0.00 30.72 3.01
912 2088 8.899771 TCGTGTAATCAGATCTTGTATGAACTA 58.100 33.333 0.00 0.00 30.72 2.24
913 2089 9.175060 CGTGTAATCAGATCTTGTATGAACTAG 57.825 37.037 0.00 0.00 30.72 2.57
917 2093 8.864069 AATCAGATCTTGTATGAACTAGTTCG 57.136 34.615 26.35 13.69 42.28 3.95
918 2094 6.796426 TCAGATCTTGTATGAACTAGTTCGG 58.204 40.000 26.35 13.84 42.28 4.30
919 2095 6.602009 TCAGATCTTGTATGAACTAGTTCGGA 59.398 38.462 26.35 16.07 42.28 4.55
920 2096 7.285629 TCAGATCTTGTATGAACTAGTTCGGAT 59.714 37.037 26.35 18.78 42.28 4.18
921 2097 7.593273 CAGATCTTGTATGAACTAGTTCGGATC 59.407 40.741 26.35 24.98 42.28 3.36
922 2098 6.145338 TCTTGTATGAACTAGTTCGGATCC 57.855 41.667 26.35 14.61 42.28 3.36
923 2099 4.563337 TGTATGAACTAGTTCGGATCCG 57.437 45.455 28.62 28.62 42.28 4.18
933 2109 2.924185 TCGGATCCGAGGTCGTATC 58.076 57.895 32.59 0.00 44.01 2.24
934 2110 0.107268 TCGGATCCGAGGTCGTATCA 59.893 55.000 32.59 6.76 44.01 2.15
1141 2318 1.817099 GAGCCCATCCACAAGCTCG 60.817 63.158 0.00 0.00 42.02 5.03
1263 2467 2.417719 GACCTGTGCAAGTTTCTCGAT 58.582 47.619 0.00 0.00 0.00 3.59
1267 2471 0.169009 GTGCAAGTTTCTCGATGGGC 59.831 55.000 0.00 0.00 0.00 5.36
1499 2721 4.646572 GGTACCAAAGATCCATCCATCTC 58.353 47.826 7.15 0.00 31.44 2.75
1508 3086 0.812811 CCATCCATCTCGCACACCTG 60.813 60.000 0.00 0.00 0.00 4.00
1529 3107 2.887151 AGTTCTGAACAGGGGATTGG 57.113 50.000 21.50 0.00 0.00 3.16
1567 3150 8.697507 AAGAAACAGTGGACTGAATTATTTCT 57.302 30.769 13.74 13.23 46.59 2.52
1644 3227 2.203015 ATGCCGCCGATGTACACC 60.203 61.111 0.00 0.00 0.00 4.16
1677 3260 3.768185 GAGCATCGACGGCGCCTTA 62.768 63.158 26.68 7.14 37.46 2.69
1978 3564 3.303135 AGTTCCGTGAGCTCGCCA 61.303 61.111 21.21 5.59 0.00 5.69
2064 3650 1.741770 GAGCAAGGCGTGGTTCGAT 60.742 57.895 6.57 0.00 42.86 3.59
2079 3665 0.876399 TCGATGAGTTCACGAACCGA 59.124 50.000 6.30 5.75 42.06 4.69
2081 3667 0.992802 GATGAGTTCACGAACCGAGC 59.007 55.000 6.30 0.00 42.06 5.03
2085 3671 3.986006 TTCACGAACCGAGCCGCT 61.986 61.111 0.00 0.00 0.00 5.52
2086 3672 4.717629 TCACGAACCGAGCCGCTG 62.718 66.667 0.00 0.00 0.00 5.18
2088 3674 4.719369 ACGAACCGAGCCGCTGTC 62.719 66.667 0.00 0.00 0.00 3.51
2089 3675 4.717629 CGAACCGAGCCGCTGTCA 62.718 66.667 0.00 0.00 0.00 3.58
2090 3676 2.357034 GAACCGAGCCGCTGTCAA 60.357 61.111 0.00 0.00 0.00 3.18
2175 3782 1.075542 TGTTTAATCTGTGCGCCTCG 58.924 50.000 4.18 0.00 0.00 4.63
2301 3908 2.027625 CTGCGGTTGGAACTCGACC 61.028 63.158 5.06 0.00 44.80 4.79
2450 4057 1.187087 GTGACGAAGGAGGAGGTGAT 58.813 55.000 0.00 0.00 0.00 3.06
2501 4108 0.254178 GGAATTGCAGAGAGGGCAGA 59.746 55.000 0.00 0.00 43.05 4.26
2565 4172 4.876107 GGCTCCTCGTATGAGAATTTCAAA 59.124 41.667 13.79 0.00 45.57 2.69
2636 4249 2.120232 GATGGTCGCTACGATCTGTTG 58.880 52.381 6.18 0.00 37.91 3.33
2677 4294 3.306502 CGTGGGAAGCTAGTGTTAAGGAA 60.307 47.826 0.00 0.00 0.00 3.36
2713 4594 6.919775 AGAGTTGTGTAGACAAATACTCCT 57.080 37.500 15.88 5.61 43.77 3.69
2742 4623 8.977505 CATCCCATAATATAAAAGCGTTTTTGG 58.022 33.333 18.77 10.57 37.12 3.28
2762 4851 3.339742 TGGCAGGATGGAGGGAGTATATA 59.660 47.826 0.00 0.00 35.86 0.86
2816 4905 5.066505 TGTTGTTTTTGCCAAAAAGTTGTGT 59.933 32.000 15.27 0.00 40.71 3.72
2817 4906 6.260050 TGTTGTTTTTGCCAAAAAGTTGTGTA 59.740 30.769 15.27 0.00 40.71 2.90
2818 4907 6.861065 TGTTTTTGCCAAAAAGTTGTGTAA 57.139 29.167 15.27 0.00 40.71 2.41
2819 4908 7.440523 TGTTTTTGCCAAAAAGTTGTGTAAT 57.559 28.000 15.27 0.00 40.71 1.89
2893 6734 1.681538 ATGTTGTTGCAACGTACCCA 58.318 45.000 23.79 15.10 0.00 4.51
2907 6748 3.259123 ACGTACCCATTTCGGTTTCTACT 59.741 43.478 0.00 0.00 37.34 2.57
2909 6750 4.381292 CGTACCCATTTCGGTTTCTACTCT 60.381 45.833 0.00 0.00 37.34 3.24
2913 6754 6.113411 ACCCATTTCGGTTTCTACTCTTATG 58.887 40.000 0.00 0.00 29.19 1.90
2914 6755 6.070424 ACCCATTTCGGTTTCTACTCTTATGA 60.070 38.462 0.00 0.00 29.19 2.15
2953 6794 6.704310 AGCTTGTTTTGAGGCATTGATAAAT 58.296 32.000 0.00 0.00 0.00 1.40
2966 6807 5.975939 GCATTGATAAATTGTGAAGGAGCTC 59.024 40.000 4.71 4.71 0.00 4.09
2971 6812 8.806429 TGATAAATTGTGAAGGAGCTCATTTA 57.194 30.769 15.77 13.91 0.00 1.40
2977 6818 3.009723 TGAAGGAGCTCATTTAAAGGCG 58.990 45.455 15.77 0.00 0.00 5.52
2985 6826 4.576463 AGCTCATTTAAAGGCGTGGATAAG 59.424 41.667 0.00 0.00 0.00 1.73
3026 6867 3.576356 CACGGCGTGCATGGGATC 61.576 66.667 28.30 0.00 0.00 3.36
3027 6868 4.094646 ACGGCGTGCATGGGATCA 62.095 61.111 13.76 0.00 0.00 2.92
3028 6869 2.592574 CGGCGTGCATGGGATCAT 60.593 61.111 8.27 0.00 0.00 2.45
3135 7002 3.755378 TCTGAAAGCAAAGGAGAAGATGC 59.245 43.478 0.00 0.00 39.06 3.91
3149 7016 8.719645 AGGAGAAGATGCATAGAAATACTAGT 57.280 34.615 0.00 0.00 34.35 2.57
3170 7037 6.260870 AGTAGTAGGATGTAATCATGCTCG 57.739 41.667 5.58 0.00 46.93 5.03
3176 7043 7.447545 AGTAGGATGTAATCATGCTCGTAGTAA 59.552 37.037 5.58 0.00 46.93 2.24
3202 7069 0.036306 ACCTCGGTGGAAACCATGTC 59.964 55.000 2.59 0.00 39.71 3.06
3361 7229 2.227194 TCGAACTGCCTAGCGATATGA 58.773 47.619 0.00 0.00 0.00 2.15
3375 7243 2.815158 GATATGACTCTCCTCTCCCCC 58.185 57.143 0.00 0.00 0.00 5.40
3391 7259 4.038804 CCTCCCCCTCCCCTTCCA 62.039 72.222 0.00 0.00 0.00 3.53
3392 7260 2.692741 CTCCCCCTCCCCTTCCAC 60.693 72.222 0.00 0.00 0.00 4.02
3393 7261 3.216371 TCCCCCTCCCCTTCCACT 61.216 66.667 0.00 0.00 0.00 4.00
3401 7269 1.852626 CCCCTTCCACTGTCCCCTT 60.853 63.158 0.00 0.00 0.00 3.95
3402 7270 1.685820 CCCTTCCACTGTCCCCTTC 59.314 63.158 0.00 0.00 0.00 3.46
3403 7271 1.685820 CCTTCCACTGTCCCCTTCC 59.314 63.158 0.00 0.00 0.00 3.46
3404 7272 1.685820 CTTCCACTGTCCCCTTCCC 59.314 63.158 0.00 0.00 0.00 3.97
3405 7273 1.073319 TTCCACTGTCCCCTTCCCA 60.073 57.895 0.00 0.00 0.00 4.37
3406 7274 1.423794 TTCCACTGTCCCCTTCCCAC 61.424 60.000 0.00 0.00 0.00 4.61
3407 7275 2.347490 CACTGTCCCCTTCCCACG 59.653 66.667 0.00 0.00 0.00 4.94
3408 7276 3.637273 ACTGTCCCCTTCCCACGC 61.637 66.667 0.00 0.00 0.00 5.34
3409 7277 4.410400 CTGTCCCCTTCCCACGCC 62.410 72.222 0.00 0.00 0.00 5.68
3440 7308 3.741476 GCTTTGCTCCGCCCACTG 61.741 66.667 0.00 0.00 0.00 3.66
3442 7310 1.003839 CTTTGCTCCGCCCACTGTA 60.004 57.895 0.00 0.00 0.00 2.74
3460 7328 2.607750 GGCTCACCTGACCCCTCA 60.608 66.667 0.00 0.00 0.00 3.86
3477 7345 0.115152 TCACTTGCCTCCTCCTCTCA 59.885 55.000 0.00 0.00 0.00 3.27
3482 7350 0.254178 TGCCTCCTCCTCTCATTTGC 59.746 55.000 0.00 0.00 0.00 3.68
3487 7355 0.179062 CCTCCTCTCATTTGCCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
3501 7369 2.124487 CTCGTCTCTCCCCTCGCT 60.124 66.667 0.00 0.00 0.00 4.93
3505 7373 2.364317 TCTCTCCCCTCGCTTGGG 60.364 66.667 4.10 4.10 46.68 4.12
3506 7374 4.168291 CTCTCCCCTCGCTTGGGC 62.168 72.222 5.46 0.00 45.78 5.36
3524 7392 3.785859 GCCTGGCTCATGTCCCGA 61.786 66.667 12.43 0.00 0.00 5.14
3554 7422 0.674895 CCTTGGCTCCTCCTCAAACG 60.675 60.000 0.00 0.00 35.26 3.60
3555 7423 0.674895 CTTGGCTCCTCCTCAAACGG 60.675 60.000 0.00 0.00 35.26 4.44
3567 7435 1.040339 TCAAACGGCTTTGGGTGCTT 61.040 50.000 8.76 0.00 37.87 3.91
3568 7436 0.875474 CAAACGGCTTTGGGTGCTTG 60.875 55.000 0.00 0.00 34.20 4.01
3569 7437 2.026945 AAACGGCTTTGGGTGCTTGG 62.027 55.000 0.00 0.00 0.00 3.61
3570 7438 2.912025 CGGCTTTGGGTGCTTGGT 60.912 61.111 0.00 0.00 0.00 3.67
3571 7439 2.736531 GGCTTTGGGTGCTTGGTG 59.263 61.111 0.00 0.00 0.00 4.17
3572 7440 2.133641 GGCTTTGGGTGCTTGGTGT 61.134 57.895 0.00 0.00 0.00 4.16
3573 7441 1.363807 GCTTTGGGTGCTTGGTGTC 59.636 57.895 0.00 0.00 0.00 3.67
3574 7442 1.654220 CTTTGGGTGCTTGGTGTCG 59.346 57.895 0.00 0.00 0.00 4.35
3575 7443 1.077357 TTTGGGTGCTTGGTGTCGT 60.077 52.632 0.00 0.00 0.00 4.34
3576 7444 0.681564 TTTGGGTGCTTGGTGTCGTT 60.682 50.000 0.00 0.00 0.00 3.85
3577 7445 1.380403 TTGGGTGCTTGGTGTCGTTG 61.380 55.000 0.00 0.00 0.00 4.10
3578 7446 2.551912 GGGTGCTTGGTGTCGTTGG 61.552 63.158 0.00 0.00 0.00 3.77
3579 7447 2.551912 GGTGCTTGGTGTCGTTGGG 61.552 63.158 0.00 0.00 0.00 4.12
3580 7448 2.203280 TGCTTGGTGTCGTTGGGG 60.203 61.111 0.00 0.00 0.00 4.96
3581 7449 2.112297 GCTTGGTGTCGTTGGGGA 59.888 61.111 0.00 0.00 0.00 4.81
3582 7450 2.258726 GCTTGGTGTCGTTGGGGAC 61.259 63.158 0.00 0.00 37.45 4.46
3583 7451 1.450211 CTTGGTGTCGTTGGGGACT 59.550 57.895 0.00 0.00 37.81 3.85
3584 7452 0.602905 CTTGGTGTCGTTGGGGACTC 60.603 60.000 0.00 0.00 37.81 3.36
3585 7453 1.052124 TTGGTGTCGTTGGGGACTCT 61.052 55.000 0.00 0.00 37.81 3.24
3586 7454 1.004918 GGTGTCGTTGGGGACTCTG 60.005 63.158 0.00 0.00 37.81 3.35
3587 7455 1.469335 GGTGTCGTTGGGGACTCTGA 61.469 60.000 0.00 0.00 37.81 3.27
3588 7456 0.319641 GTGTCGTTGGGGACTCTGAC 60.320 60.000 0.00 0.00 37.81 3.51
3589 7457 1.080705 GTCGTTGGGGACTCTGACG 60.081 63.158 0.00 0.00 34.09 4.35
3590 7458 1.529948 TCGTTGGGGACTCTGACGT 60.530 57.895 0.00 0.00 35.42 4.34
3591 7459 1.372997 CGTTGGGGACTCTGACGTG 60.373 63.158 0.00 0.00 0.00 4.49
3592 7460 1.802337 CGTTGGGGACTCTGACGTGA 61.802 60.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.068165 GTGAGCTAGTTTGGGCTGTTTTT 59.932 43.478 0.00 0.00 39.05 1.94
23 24 2.623416 GTGAGCTAGTTTGGGCTGTTTT 59.377 45.455 0.00 0.00 39.05 2.43
24 25 2.230660 GTGAGCTAGTTTGGGCTGTTT 58.769 47.619 0.00 0.00 39.05 2.83
25 26 1.142870 TGTGAGCTAGTTTGGGCTGTT 59.857 47.619 0.00 0.00 39.05 3.16
26 27 0.764890 TGTGAGCTAGTTTGGGCTGT 59.235 50.000 0.00 0.00 39.05 4.40
27 28 1.896220 TTGTGAGCTAGTTTGGGCTG 58.104 50.000 0.00 0.00 39.05 4.85
28 29 2.623416 GTTTTGTGAGCTAGTTTGGGCT 59.377 45.455 0.00 0.00 41.88 5.19
29 30 2.360801 TGTTTTGTGAGCTAGTTTGGGC 59.639 45.455 0.00 0.00 0.00 5.36
30 31 3.550842 GCTGTTTTGTGAGCTAGTTTGGG 60.551 47.826 0.00 0.00 32.12 4.12
31 32 3.550842 GGCTGTTTTGTGAGCTAGTTTGG 60.551 47.826 0.00 0.00 35.42 3.28
32 33 3.550842 GGGCTGTTTTGTGAGCTAGTTTG 60.551 47.826 0.00 0.00 35.42 2.93
33 34 2.623416 GGGCTGTTTTGTGAGCTAGTTT 59.377 45.455 0.00 0.00 35.42 2.66
34 35 2.230660 GGGCTGTTTTGTGAGCTAGTT 58.769 47.619 0.00 0.00 35.42 2.24
35 36 1.142870 TGGGCTGTTTTGTGAGCTAGT 59.857 47.619 0.00 0.00 35.42 2.57
36 37 1.896220 TGGGCTGTTTTGTGAGCTAG 58.104 50.000 0.00 0.00 35.42 3.42
37 38 2.161855 CATGGGCTGTTTTGTGAGCTA 58.838 47.619 0.00 0.00 35.42 3.32
53 54 6.627243 TGAGATTCATGCTTTTCTTTCATGG 58.373 36.000 0.00 0.00 38.41 3.66
55 56 7.331193 GCTTTGAGATTCATGCTTTTCTTTCAT 59.669 33.333 0.00 0.00 0.00 2.57
66 67 5.647589 TGATTTCTGCTTTGAGATTCATGC 58.352 37.500 0.00 0.00 0.00 4.06
69 70 7.663827 ACAATTGATTTCTGCTTTGAGATTCA 58.336 30.769 13.59 0.00 0.00 2.57
104 105 8.717821 GCCTGAAAAATTAATTTTGGGTTAGTC 58.282 33.333 23.34 16.11 41.27 2.59
121 122 3.755905 TCATATGCAAGTCGCCTGAAAAA 59.244 39.130 0.00 0.00 41.33 1.94
169 174 6.000840 GGAGAAAGTGAGAAGGAAGACATTT 58.999 40.000 0.00 0.00 0.00 2.32
185 190 3.645687 AGCAAGAGAGTGAAGGAGAAAGT 59.354 43.478 0.00 0.00 0.00 2.66
256 261 6.439375 GGAAACTACCCTTGGGAAACATAATT 59.561 38.462 13.39 0.00 0.00 1.40
581 1757 2.030540 TCGTAACAAGGTCGAACTGGAG 60.031 50.000 13.08 3.92 0.00 3.86
590 1766 1.653151 GCAGGGATCGTAACAAGGTC 58.347 55.000 0.00 0.00 0.00 3.85
591 1767 0.252197 GGCAGGGATCGTAACAAGGT 59.748 55.000 0.00 0.00 0.00 3.50
592 1768 0.463833 GGGCAGGGATCGTAACAAGG 60.464 60.000 0.00 0.00 0.00 3.61
593 1769 0.810031 CGGGCAGGGATCGTAACAAG 60.810 60.000 0.00 0.00 0.00 3.16
594 1770 1.219664 CGGGCAGGGATCGTAACAA 59.780 57.895 0.00 0.00 0.00 2.83
595 1771 2.897207 CGGGCAGGGATCGTAACA 59.103 61.111 0.00 0.00 0.00 2.41
596 1772 2.588034 GCGGGCAGGGATCGTAAC 60.588 66.667 0.00 0.00 0.00 2.50
597 1773 4.215742 CGCGGGCAGGGATCGTAA 62.216 66.667 0.00 0.00 34.27 3.18
613 1789 3.775654 GTCTCCTCAGGTGGGCCG 61.776 72.222 0.00 0.00 40.50 6.13
614 1790 3.775654 CGTCTCCTCAGGTGGGCC 61.776 72.222 0.00 0.00 0.00 5.80
615 1791 3.775654 CCGTCTCCTCAGGTGGGC 61.776 72.222 0.00 0.00 0.00 5.36
616 1792 3.775654 GCCGTCTCCTCAGGTGGG 61.776 72.222 0.00 0.00 0.00 4.61
617 1793 4.135153 CGCCGTCTCCTCAGGTGG 62.135 72.222 0.00 0.00 32.29 4.61
618 1794 4.803426 GCGCCGTCTCCTCAGGTG 62.803 72.222 0.00 0.00 38.48 4.00
621 1797 4.504916 CTGGCGCCGTCTCCTCAG 62.505 72.222 23.90 6.88 0.00 3.35
635 1811 3.406200 CTCCTCTGGTGGGCCTGG 61.406 72.222 4.53 0.00 34.83 4.45
636 1812 1.908340 CTTCTCCTCTGGTGGGCCTG 61.908 65.000 4.53 0.00 35.27 4.85
637 1813 1.614824 CTTCTCCTCTGGTGGGCCT 60.615 63.158 4.53 0.00 35.27 5.19
638 1814 2.674220 CCTTCTCCTCTGGTGGGCC 61.674 68.421 0.00 0.00 0.00 5.80
639 1815 2.993853 CCTTCTCCTCTGGTGGGC 59.006 66.667 0.00 0.00 0.00 5.36
640 1816 2.993853 GCCTTCTCCTCTGGTGGG 59.006 66.667 0.00 0.00 0.00 4.61
641 1817 2.581354 CGCCTTCTCCTCTGGTGG 59.419 66.667 0.00 0.00 0.00 4.61
642 1818 2.125350 GCGCCTTCTCCTCTGGTG 60.125 66.667 0.00 0.00 34.75 4.17
643 1819 2.177594 CTTGCGCCTTCTCCTCTGGT 62.178 60.000 4.18 0.00 0.00 4.00
644 1820 1.449246 CTTGCGCCTTCTCCTCTGG 60.449 63.158 4.18 0.00 0.00 3.86
645 1821 1.449246 CCTTGCGCCTTCTCCTCTG 60.449 63.158 4.18 0.00 0.00 3.35
646 1822 2.985456 CCTTGCGCCTTCTCCTCT 59.015 61.111 4.18 0.00 0.00 3.69
647 1823 2.821810 GCCTTGCGCCTTCTCCTC 60.822 66.667 4.18 0.00 0.00 3.71
656 1832 4.404654 CTTCGTTGGGCCTTGCGC 62.405 66.667 4.53 0.00 41.94 6.09
657 1833 4.404654 GCTTCGTTGGGCCTTGCG 62.405 66.667 4.53 6.86 0.00 4.85
658 1834 4.404654 CGCTTCGTTGGGCCTTGC 62.405 66.667 4.53 0.00 0.00 4.01
659 1835 4.404654 GCGCTTCGTTGGGCCTTG 62.405 66.667 4.53 0.00 39.55 3.61
666 1842 3.335259 CTTCGGTCGCGCTTCGTTG 62.335 63.158 5.56 0.90 39.67 4.10
667 1843 3.103911 CTTCGGTCGCGCTTCGTT 61.104 61.111 5.56 0.00 39.67 3.85
677 1853 3.959991 GAGTGCTGGGCCTTCGGTC 62.960 68.421 4.53 0.00 0.00 4.79
678 1854 4.021925 GAGTGCTGGGCCTTCGGT 62.022 66.667 4.53 0.00 0.00 4.69
697 1873 0.389391 CGTACTGATGGGCTGGGTAG 59.611 60.000 0.00 0.00 0.00 3.18
698 1874 0.324923 ACGTACTGATGGGCTGGGTA 60.325 55.000 0.00 0.00 0.00 3.69
699 1875 0.324923 TACGTACTGATGGGCTGGGT 60.325 55.000 0.00 0.00 0.00 4.51
700 1876 0.828022 TTACGTACTGATGGGCTGGG 59.172 55.000 0.00 0.00 0.00 4.45
701 1877 1.472728 GGTTACGTACTGATGGGCTGG 60.473 57.143 0.00 0.00 0.00 4.85
702 1878 1.480954 AGGTTACGTACTGATGGGCTG 59.519 52.381 0.00 0.00 0.00 4.85
703 1879 1.861982 AGGTTACGTACTGATGGGCT 58.138 50.000 0.00 0.00 0.00 5.19
704 1880 2.545322 GCTAGGTTACGTACTGATGGGC 60.545 54.545 0.00 0.00 0.00 5.36
705 1881 2.035576 GGCTAGGTTACGTACTGATGGG 59.964 54.545 0.00 0.00 0.00 4.00
706 1882 2.691526 TGGCTAGGTTACGTACTGATGG 59.308 50.000 0.00 0.00 0.00 3.51
707 1883 3.380637 ACTGGCTAGGTTACGTACTGATG 59.619 47.826 0.85 0.00 0.00 3.07
708 1884 3.629087 ACTGGCTAGGTTACGTACTGAT 58.371 45.455 0.85 0.00 0.00 2.90
709 1885 3.077484 ACTGGCTAGGTTACGTACTGA 57.923 47.619 0.85 0.00 0.00 3.41
710 1886 3.944015 AGTACTGGCTAGGTTACGTACTG 59.056 47.826 0.85 0.00 36.97 2.74
711 1887 4.227864 AGTACTGGCTAGGTTACGTACT 57.772 45.455 0.85 0.00 34.42 2.73
712 1888 4.972514 AAGTACTGGCTAGGTTACGTAC 57.027 45.455 0.85 0.00 0.00 3.67
713 1889 5.066505 GCTTAAGTACTGGCTAGGTTACGTA 59.933 44.000 0.85 0.00 0.00 3.57
714 1890 4.142293 GCTTAAGTACTGGCTAGGTTACGT 60.142 45.833 0.85 0.00 0.00 3.57
715 1891 4.097589 AGCTTAAGTACTGGCTAGGTTACG 59.902 45.833 14.07 0.00 32.94 3.18
716 1892 5.349809 CAGCTTAAGTACTGGCTAGGTTAC 58.650 45.833 14.91 0.00 33.43 2.50
717 1893 4.404715 CCAGCTTAAGTACTGGCTAGGTTA 59.595 45.833 14.05 0.00 46.50 2.85
718 1894 3.197983 CCAGCTTAAGTACTGGCTAGGTT 59.802 47.826 14.05 0.00 46.50 3.50
719 1895 2.766828 CCAGCTTAAGTACTGGCTAGGT 59.233 50.000 14.05 5.62 46.50 3.08
720 1896 3.460857 CCAGCTTAAGTACTGGCTAGG 57.539 52.381 14.05 14.24 46.50 3.02
726 1902 1.279271 AGGCACCCAGCTTAAGTACTG 59.721 52.381 4.02 3.87 44.79 2.74
727 1903 1.555533 GAGGCACCCAGCTTAAGTACT 59.444 52.381 4.02 0.00 44.79 2.73
728 1904 1.278127 TGAGGCACCCAGCTTAAGTAC 59.722 52.381 4.02 0.00 44.79 2.73
729 1905 1.651737 TGAGGCACCCAGCTTAAGTA 58.348 50.000 4.02 0.00 44.79 2.24
730 1906 0.771127 TTGAGGCACCCAGCTTAAGT 59.229 50.000 4.02 0.00 44.79 2.24
731 1907 1.909700 TTTGAGGCACCCAGCTTAAG 58.090 50.000 0.00 0.00 44.79 1.85
732 1908 2.373335 TTTTGAGGCACCCAGCTTAA 57.627 45.000 0.00 0.00 44.79 1.85
733 1909 2.373335 TTTTTGAGGCACCCAGCTTA 57.627 45.000 0.00 0.00 44.79 3.09
734 1910 3.222287 TTTTTGAGGCACCCAGCTT 57.778 47.368 0.00 0.00 44.79 3.74
764 1940 2.296190 CGCCTTCCCAGCTTAAGTTTTT 59.704 45.455 4.02 0.00 0.00 1.94
765 1941 1.886542 CGCCTTCCCAGCTTAAGTTTT 59.113 47.619 4.02 0.00 0.00 2.43
766 1942 1.073284 TCGCCTTCCCAGCTTAAGTTT 59.927 47.619 4.02 0.00 0.00 2.66
767 1943 0.690762 TCGCCTTCCCAGCTTAAGTT 59.309 50.000 4.02 0.00 0.00 2.66
768 1944 0.250513 CTCGCCTTCCCAGCTTAAGT 59.749 55.000 4.02 0.00 0.00 2.24
769 1945 0.537188 TCTCGCCTTCCCAGCTTAAG 59.463 55.000 0.00 0.00 0.00 1.85
770 1946 0.537188 CTCTCGCCTTCCCAGCTTAA 59.463 55.000 0.00 0.00 0.00 1.85
771 1947 1.330655 CCTCTCGCCTTCCCAGCTTA 61.331 60.000 0.00 0.00 0.00 3.09
772 1948 2.664081 CCTCTCGCCTTCCCAGCTT 61.664 63.158 0.00 0.00 0.00 3.74
773 1949 3.080121 CCTCTCGCCTTCCCAGCT 61.080 66.667 0.00 0.00 0.00 4.24
774 1950 4.168291 CCCTCTCGCCTTCCCAGC 62.168 72.222 0.00 0.00 0.00 4.85
775 1951 1.965754 CTTCCCTCTCGCCTTCCCAG 61.966 65.000 0.00 0.00 0.00 4.45
776 1952 1.990060 CTTCCCTCTCGCCTTCCCA 60.990 63.158 0.00 0.00 0.00 4.37
777 1953 2.736826 CCTTCCCTCTCGCCTTCCC 61.737 68.421 0.00 0.00 0.00 3.97
778 1954 2.904131 CCTTCCCTCTCGCCTTCC 59.096 66.667 0.00 0.00 0.00 3.46
779 1955 2.188207 GCCTTCCCTCTCGCCTTC 59.812 66.667 0.00 0.00 0.00 3.46
780 1956 2.607750 TGCCTTCCCTCTCGCCTT 60.608 61.111 0.00 0.00 0.00 4.35
781 1957 3.080121 CTGCCTTCCCTCTCGCCT 61.080 66.667 0.00 0.00 0.00 5.52
782 1958 4.168291 CCTGCCTTCCCTCTCGCC 62.168 72.222 0.00 0.00 0.00 5.54
783 1959 4.847444 GCCTGCCTTCCCTCTCGC 62.847 72.222 0.00 0.00 0.00 5.03
784 1960 3.382803 CTGCCTGCCTTCCCTCTCG 62.383 68.421 0.00 0.00 0.00 4.04
785 1961 1.970352 CTCTGCCTGCCTTCCCTCTC 61.970 65.000 0.00 0.00 0.00 3.20
786 1962 1.994507 CTCTGCCTGCCTTCCCTCT 60.995 63.158 0.00 0.00 0.00 3.69
787 1963 1.992277 TCTCTGCCTGCCTTCCCTC 60.992 63.158 0.00 0.00 0.00 4.30
788 1964 2.123632 TCTCTGCCTGCCTTCCCT 59.876 61.111 0.00 0.00 0.00 4.20
789 1965 2.270527 GTCTCTGCCTGCCTTCCC 59.729 66.667 0.00 0.00 0.00 3.97
790 1966 2.125350 CGTCTCTGCCTGCCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
791 1967 1.153667 CTCGTCTCTGCCTGCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
792 1968 1.607756 TCTCGTCTCTGCCTGCCTT 60.608 57.895 0.00 0.00 0.00 4.35
793 1969 2.036414 TCTCGTCTCTGCCTGCCT 59.964 61.111 0.00 0.00 0.00 4.75
794 1970 2.183046 GTCTCGTCTCTGCCTGCC 59.817 66.667 0.00 0.00 0.00 4.85
795 1971 2.202544 CGTCTCGTCTCTGCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
796 1972 1.135731 GTCGTCTCGTCTCTGCCTG 59.864 63.158 0.00 0.00 0.00 4.85
797 1973 2.041686 GGTCGTCTCGTCTCTGCCT 61.042 63.158 0.00 0.00 0.00 4.75
798 1974 2.041686 AGGTCGTCTCGTCTCTGCC 61.042 63.158 0.00 0.00 0.00 4.85
799 1975 1.135731 CAGGTCGTCTCGTCTCTGC 59.864 63.158 0.00 0.00 0.00 4.26
800 1976 1.797441 CCAGGTCGTCTCGTCTCTG 59.203 63.158 0.00 0.00 0.00 3.35
801 1977 2.041686 GCCAGGTCGTCTCGTCTCT 61.042 63.158 0.00 0.00 0.00 3.10
802 1978 2.486042 GCCAGGTCGTCTCGTCTC 59.514 66.667 0.00 0.00 0.00 3.36
803 1979 3.432588 CGCCAGGTCGTCTCGTCT 61.433 66.667 0.00 0.00 0.00 4.18
804 1980 4.477975 CCGCCAGGTCGTCTCGTC 62.478 72.222 3.11 0.00 0.00 4.20
818 1994 3.934391 ATAGAATAGCCGCCGCCGC 62.934 63.158 0.00 0.00 34.57 6.53
819 1995 1.805945 GATAGAATAGCCGCCGCCG 60.806 63.158 0.00 0.00 34.57 6.46
820 1996 1.448013 GGATAGAATAGCCGCCGCC 60.448 63.158 0.00 0.00 37.40 6.13
821 1997 4.187056 GGATAGAATAGCCGCCGC 57.813 61.111 0.00 0.00 37.40 6.53
827 2003 5.834281 AGAGGAAAAGGGGATAGAATAGC 57.166 43.478 0.00 0.00 0.00 2.97
828 2004 8.040002 AGAAAGAGGAAAAGGGGATAGAATAG 57.960 38.462 0.00 0.00 0.00 1.73
829 2005 7.851968 AGAGAAAGAGGAAAAGGGGATAGAATA 59.148 37.037 0.00 0.00 0.00 1.75
830 2006 6.680644 AGAGAAAGAGGAAAAGGGGATAGAAT 59.319 38.462 0.00 0.00 0.00 2.40
831 2007 6.032693 AGAGAAAGAGGAAAAGGGGATAGAA 58.967 40.000 0.00 0.00 0.00 2.10
832 2008 5.426833 CAGAGAAAGAGGAAAAGGGGATAGA 59.573 44.000 0.00 0.00 0.00 1.98
833 2009 5.190726 ACAGAGAAAGAGGAAAAGGGGATAG 59.809 44.000 0.00 0.00 0.00 2.08
834 2010 5.101529 ACAGAGAAAGAGGAAAAGGGGATA 58.898 41.667 0.00 0.00 0.00 2.59
835 2011 3.919554 ACAGAGAAAGAGGAAAAGGGGAT 59.080 43.478 0.00 0.00 0.00 3.85
836 2012 3.327439 ACAGAGAAAGAGGAAAAGGGGA 58.673 45.455 0.00 0.00 0.00 4.81
837 2013 3.797559 ACAGAGAAAGAGGAAAAGGGG 57.202 47.619 0.00 0.00 0.00 4.79
838 2014 6.115448 TCTAACAGAGAAAGAGGAAAAGGG 57.885 41.667 0.00 0.00 0.00 3.95
839 2015 6.428465 GGTTCTAACAGAGAAAGAGGAAAAGG 59.572 42.308 0.00 0.00 45.90 3.11
840 2016 6.428465 GGGTTCTAACAGAGAAAGAGGAAAAG 59.572 42.308 0.00 0.00 45.90 2.27
841 2017 6.101296 AGGGTTCTAACAGAGAAAGAGGAAAA 59.899 38.462 0.00 0.00 45.90 2.29
842 2018 5.607171 AGGGTTCTAACAGAGAAAGAGGAAA 59.393 40.000 0.00 0.00 45.90 3.13
843 2019 5.155905 AGGGTTCTAACAGAGAAAGAGGAA 58.844 41.667 0.00 0.00 45.90 3.36
844 2020 4.753186 AGGGTTCTAACAGAGAAAGAGGA 58.247 43.478 0.00 0.00 45.90 3.71
845 2021 5.394773 GCTAGGGTTCTAACAGAGAAAGAGG 60.395 48.000 0.00 0.00 45.90 3.69
846 2022 5.394773 GGCTAGGGTTCTAACAGAGAAAGAG 60.395 48.000 0.00 0.00 45.90 2.85
847 2023 4.466726 GGCTAGGGTTCTAACAGAGAAAGA 59.533 45.833 0.00 0.00 45.90 2.52
848 2024 4.223032 TGGCTAGGGTTCTAACAGAGAAAG 59.777 45.833 0.00 0.00 45.90 2.62
849 2025 4.020485 GTGGCTAGGGTTCTAACAGAGAAA 60.020 45.833 0.00 0.00 45.90 2.52
850 2026 3.514309 GTGGCTAGGGTTCTAACAGAGAA 59.486 47.826 0.00 0.00 42.13 2.87
851 2027 3.097614 GTGGCTAGGGTTCTAACAGAGA 58.902 50.000 0.00 0.00 0.00 3.10
852 2028 2.168728 GGTGGCTAGGGTTCTAACAGAG 59.831 54.545 0.00 0.00 0.00 3.35
853 2029 2.185387 GGTGGCTAGGGTTCTAACAGA 58.815 52.381 0.00 0.00 0.00 3.41
854 2030 1.209747 GGGTGGCTAGGGTTCTAACAG 59.790 57.143 0.00 0.00 0.00 3.16
855 2031 1.282382 GGGTGGCTAGGGTTCTAACA 58.718 55.000 0.00 0.00 0.00 2.41
856 2032 1.282382 TGGGTGGCTAGGGTTCTAAC 58.718 55.000 0.00 0.00 0.00 2.34
857 2033 2.124411 GATGGGTGGCTAGGGTTCTAA 58.876 52.381 0.00 0.00 0.00 2.10
858 2034 1.294068 AGATGGGTGGCTAGGGTTCTA 59.706 52.381 0.00 0.00 0.00 2.10
859 2035 0.044855 AGATGGGTGGCTAGGGTTCT 59.955 55.000 0.00 0.00 0.00 3.01
860 2036 0.919710 AAGATGGGTGGCTAGGGTTC 59.080 55.000 0.00 0.00 0.00 3.62
861 2037 0.919710 GAAGATGGGTGGCTAGGGTT 59.080 55.000 0.00 0.00 0.00 4.11
862 2038 0.044855 AGAAGATGGGTGGCTAGGGT 59.955 55.000 0.00 0.00 0.00 4.34
863 2039 2.103153 TAGAAGATGGGTGGCTAGGG 57.897 55.000 0.00 0.00 0.00 3.53
864 2040 4.713792 ATTTAGAAGATGGGTGGCTAGG 57.286 45.455 0.00 0.00 0.00 3.02
865 2041 4.752101 CGAATTTAGAAGATGGGTGGCTAG 59.248 45.833 0.00 0.00 0.00 3.42
866 2042 4.163458 ACGAATTTAGAAGATGGGTGGCTA 59.837 41.667 0.00 0.00 0.00 3.93
867 2043 3.054361 ACGAATTTAGAAGATGGGTGGCT 60.054 43.478 0.00 0.00 0.00 4.75
868 2044 3.065371 CACGAATTTAGAAGATGGGTGGC 59.935 47.826 0.00 0.00 0.00 5.01
869 2045 4.261801 ACACGAATTTAGAAGATGGGTGG 58.738 43.478 0.00 0.00 0.00 4.61
870 2046 6.978343 TTACACGAATTTAGAAGATGGGTG 57.022 37.500 0.00 0.00 0.00 4.61
871 2047 7.335627 TGATTACACGAATTTAGAAGATGGGT 58.664 34.615 0.00 0.00 0.00 4.51
872 2048 7.710907 TCTGATTACACGAATTTAGAAGATGGG 59.289 37.037 0.00 0.00 0.00 4.00
873 2049 8.648557 TCTGATTACACGAATTTAGAAGATGG 57.351 34.615 0.00 0.00 0.00 3.51
878 2054 9.653287 ACAAGATCTGATTACACGAATTTAGAA 57.347 29.630 0.00 0.00 29.89 2.10
882 2058 9.599866 TCATACAAGATCTGATTACACGAATTT 57.400 29.630 0.00 0.00 0.00 1.82
883 2059 9.599866 TTCATACAAGATCTGATTACACGAATT 57.400 29.630 0.00 0.00 0.00 2.17
884 2060 9.035607 GTTCATACAAGATCTGATTACACGAAT 57.964 33.333 0.00 0.00 0.00 3.34
885 2061 8.251026 AGTTCATACAAGATCTGATTACACGAA 58.749 33.333 0.00 0.00 0.00 3.85
886 2062 7.772166 AGTTCATACAAGATCTGATTACACGA 58.228 34.615 0.00 0.00 0.00 4.35
887 2063 7.993821 AGTTCATACAAGATCTGATTACACG 57.006 36.000 0.00 0.00 0.00 4.49
891 2067 9.952188 CGAACTAGTTCATACAAGATCTGATTA 57.048 33.333 29.95 0.00 39.46 1.75
892 2068 7.923344 CCGAACTAGTTCATACAAGATCTGATT 59.077 37.037 29.95 0.00 39.46 2.57
893 2069 7.285629 TCCGAACTAGTTCATACAAGATCTGAT 59.714 37.037 29.95 0.00 39.46 2.90
894 2070 6.602009 TCCGAACTAGTTCATACAAGATCTGA 59.398 38.462 29.95 5.38 39.46 3.27
895 2071 6.796426 TCCGAACTAGTTCATACAAGATCTG 58.204 40.000 29.95 12.48 39.46 2.90
896 2072 7.255660 GGATCCGAACTAGTTCATACAAGATCT 60.256 40.741 29.95 5.44 39.46 2.75
897 2073 6.864165 GGATCCGAACTAGTTCATACAAGATC 59.136 42.308 29.95 25.22 39.46 2.75
898 2074 6.515200 CGGATCCGAACTAGTTCATACAAGAT 60.515 42.308 30.62 20.73 42.83 2.40
899 2075 5.220989 CGGATCCGAACTAGTTCATACAAGA 60.221 44.000 30.62 17.78 42.83 3.02
900 2076 4.976731 CGGATCCGAACTAGTTCATACAAG 59.023 45.833 30.62 15.40 42.83 3.16
901 2077 4.641541 TCGGATCCGAACTAGTTCATACAA 59.358 41.667 33.96 13.59 46.01 2.41
902 2078 4.201657 TCGGATCCGAACTAGTTCATACA 58.798 43.478 33.96 13.92 46.01 2.29
903 2079 4.825546 TCGGATCCGAACTAGTTCATAC 57.174 45.455 33.96 18.68 46.01 2.39
926 2102 0.801067 GTGTGGCGGTCTGATACGAC 60.801 60.000 8.56 6.31 38.94 4.34
927 2103 1.245376 TGTGTGGCGGTCTGATACGA 61.245 55.000 8.56 0.00 0.00 3.43
928 2104 0.389296 TTGTGTGGCGGTCTGATACG 60.389 55.000 1.12 1.12 0.00 3.06
929 2105 1.076332 GTTGTGTGGCGGTCTGATAC 58.924 55.000 0.00 0.00 0.00 2.24
930 2106 0.682292 TGTTGTGTGGCGGTCTGATA 59.318 50.000 0.00 0.00 0.00 2.15
931 2107 0.603707 CTGTTGTGTGGCGGTCTGAT 60.604 55.000 0.00 0.00 0.00 2.90
932 2108 1.227527 CTGTTGTGTGGCGGTCTGA 60.228 57.895 0.00 0.00 0.00 3.27
933 2109 2.896801 GCTGTTGTGTGGCGGTCTG 61.897 63.158 0.00 0.00 0.00 3.51
934 2110 1.754380 TAGCTGTTGTGTGGCGGTCT 61.754 55.000 0.00 0.00 0.00 3.85
1141 2318 1.475441 CGCCGAAGAGCATCGAGAAC 61.475 60.000 7.97 0.00 45.48 3.01
1499 2721 1.261619 GTTCAGAACTTCAGGTGTGCG 59.738 52.381 6.00 0.00 0.00 5.34
1508 3086 3.084786 CCAATCCCCTGTTCAGAACTTC 58.915 50.000 14.51 0.00 0.00 3.01
1522 3100 4.463891 TCTTCAGAGAAAAATGCCAATCCC 59.536 41.667 0.00 0.00 0.00 3.85
1547 3130 8.160106 AGAGAAAGAAATAATTCAGTCCACTGT 58.840 33.333 6.61 0.00 44.12 3.55
1550 3133 8.553459 TCAGAGAAAGAAATAATTCAGTCCAC 57.447 34.615 0.00 0.00 38.06 4.02
1567 3150 3.674997 AGCCTGCGTTTATTCAGAGAAA 58.325 40.909 0.00 0.00 32.26 2.52
1675 3258 1.132817 GGATACCTCCTGCCCCTCTAA 60.133 57.143 0.00 0.00 38.65 2.10
1677 3260 1.237458 GGATACCTCCTGCCCCTCT 59.763 63.158 0.00 0.00 38.65 3.69
1819 3405 2.035237 AACTCCTGGTCGGCGAACAA 62.035 55.000 29.07 14.27 0.00 2.83
1945 3531 3.423154 CTGCCGCGGGTCAAAGAC 61.423 66.667 29.38 7.83 0.00 3.01
1978 3564 3.334054 GGTGAGCTCCAGCCCCTT 61.334 66.667 12.15 0.00 43.38 3.95
2064 3650 1.006571 GGCTCGGTTCGTGAACTCA 60.007 57.895 12.10 0.00 40.94 3.41
2085 3671 3.965258 ATGCCCCTGCCGTTGACA 61.965 61.111 0.00 0.00 36.33 3.58
2086 3672 3.443045 CATGCCCCTGCCGTTGAC 61.443 66.667 0.00 0.00 36.33 3.18
2087 3673 2.891941 GATCATGCCCCTGCCGTTGA 62.892 60.000 0.00 0.00 36.33 3.18
2088 3674 2.440796 ATCATGCCCCTGCCGTTG 60.441 61.111 0.00 0.00 36.33 4.10
2089 3675 2.124151 GATCATGCCCCTGCCGTT 60.124 61.111 0.00 0.00 36.33 4.44
2090 3676 4.552365 CGATCATGCCCCTGCCGT 62.552 66.667 0.00 0.00 36.33 5.68
2301 3908 1.410648 CCATTTCTGACCCCCTCCATG 60.411 57.143 0.00 0.00 0.00 3.66
2450 4057 1.638529 AACCAATCCCAATTTGGCGA 58.361 45.000 10.10 9.15 46.21 5.54
2501 4108 1.003349 GAGCTGCATCCCTGAGCATAT 59.997 52.381 1.02 0.00 40.42 1.78
2565 4172 5.651530 TCGCTTAGAAGATCGACAAATCTT 58.348 37.500 0.00 0.00 46.23 2.40
2609 4222 0.455464 CGTAGCGACCATCACACGAA 60.455 55.000 0.00 0.00 0.00 3.85
2612 4225 1.065701 AGATCGTAGCGACCATCACAC 59.934 52.381 7.26 0.00 39.18 3.82
2636 4249 4.335594 CCACGATTTAAACTCCCTTGGATC 59.664 45.833 0.00 0.00 0.00 3.36
2713 4594 8.472007 AAACGCTTTTATATTATGGGATGGAA 57.528 30.769 0.00 0.00 0.00 3.53
2731 4612 0.318120 CCATCCTGCCAAAAACGCTT 59.682 50.000 0.00 0.00 0.00 4.68
2742 4623 6.567602 AAATATATACTCCCTCCATCCTGC 57.432 41.667 0.00 0.00 0.00 4.85
2816 4905 9.219603 GTAGCTATGCAGTCCAATGATTAATTA 57.780 33.333 0.00 0.00 0.00 1.40
2817 4906 7.720957 TGTAGCTATGCAGTCCAATGATTAATT 59.279 33.333 0.00 0.00 0.00 1.40
2818 4907 7.226441 TGTAGCTATGCAGTCCAATGATTAAT 58.774 34.615 0.00 0.00 0.00 1.40
2819 4908 6.591001 TGTAGCTATGCAGTCCAATGATTAA 58.409 36.000 0.00 0.00 0.00 1.40
2870 6711 3.551551 GGTACGTTGCAACAACATTCTC 58.448 45.455 28.01 9.30 0.00 2.87
2907 6748 5.048643 GCTAATAGGACGTGCTCTCATAAGA 60.049 44.000 14.74 0.00 0.00 2.10
2909 6750 4.827835 AGCTAATAGGACGTGCTCTCATAA 59.172 41.667 14.74 0.00 0.00 1.90
2913 6754 3.181485 ACAAGCTAATAGGACGTGCTCTC 60.181 47.826 14.74 0.00 33.10 3.20
2914 6755 2.761208 ACAAGCTAATAGGACGTGCTCT 59.239 45.455 14.74 0.00 33.10 4.09
2923 6764 5.841957 ATGCCTCAAAACAAGCTAATAGG 57.158 39.130 0.00 0.00 0.00 2.57
2953 6794 4.218417 GCCTTTAAATGAGCTCCTTCACAA 59.782 41.667 12.15 0.73 0.00 3.33
2966 6807 7.087639 TCAAAACTTATCCACGCCTTTAAATG 58.912 34.615 0.00 0.00 0.00 2.32
2971 6812 5.523438 TTTCAAAACTTATCCACGCCTTT 57.477 34.783 0.00 0.00 0.00 3.11
3026 6867 4.008330 AGTCTTGAGAATTGCTGGTCATG 58.992 43.478 0.00 0.00 0.00 3.07
3027 6868 4.298103 AGTCTTGAGAATTGCTGGTCAT 57.702 40.909 0.00 0.00 0.00 3.06
3028 6869 3.777106 AGTCTTGAGAATTGCTGGTCA 57.223 42.857 0.00 0.00 0.00 4.02
3031 6872 6.974965 AGTTTAAAGTCTTGAGAATTGCTGG 58.025 36.000 0.00 0.00 32.24 4.85
3149 7016 6.940867 ACTACGAGCATGATTACATCCTACTA 59.059 38.462 0.00 0.00 34.15 1.82
3235 7102 8.067488 AGAACATCAGGTCCCCAATATATTTTT 58.933 33.333 0.00 0.00 0.00 1.94
3301 7168 7.253983 GCGTTGTCGTCATTATTCATTTCTAGA 60.254 37.037 0.00 0.00 39.49 2.43
3361 7229 2.329399 GGGAGGGGGAGAGGAGAGT 61.329 68.421 0.00 0.00 0.00 3.24
3375 7243 2.692741 GTGGAAGGGGAGGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
3391 7259 3.637273 GCGTGGGAAGGGGACAGT 61.637 66.667 0.00 0.00 0.00 3.55
3392 7260 4.410400 GGCGTGGGAAGGGGACAG 62.410 72.222 0.00 0.00 0.00 3.51
3448 7316 2.529744 GGCAAGTGAGGGGTCAGGT 61.530 63.158 0.00 0.00 0.00 4.00
3451 7319 2.224159 GGAGGCAAGTGAGGGGTCA 61.224 63.158 0.00 0.00 0.00 4.02
3453 7321 1.920835 GAGGAGGCAAGTGAGGGGT 60.921 63.158 0.00 0.00 0.00 4.95
3460 7328 1.963985 AATGAGAGGAGGAGGCAAGT 58.036 50.000 0.00 0.00 0.00 3.16
3477 7345 1.627297 GGGGAGAGACGAGGGCAAAT 61.627 60.000 0.00 0.00 0.00 2.32
3482 7350 2.517402 CGAGGGGAGAGACGAGGG 60.517 72.222 0.00 0.00 0.00 4.30
3487 7355 2.896443 CCAAGCGAGGGGAGAGAC 59.104 66.667 0.00 0.00 0.00 3.36
3509 7377 2.202797 CGTCGGGACATGAGCCAG 60.203 66.667 0.00 1.16 0.00 4.85
3554 7422 2.087462 GACACCAAGCACCCAAAGCC 62.087 60.000 0.00 0.00 0.00 4.35
3555 7423 1.363807 GACACCAAGCACCCAAAGC 59.636 57.895 0.00 0.00 0.00 3.51
3567 7435 1.458777 AGAGTCCCCAACGACACCA 60.459 57.895 0.00 0.00 35.07 4.17
3568 7436 1.004918 CAGAGTCCCCAACGACACC 60.005 63.158 0.00 0.00 35.07 4.16
3569 7437 0.319641 GTCAGAGTCCCCAACGACAC 60.320 60.000 0.00 0.00 35.07 3.67
3570 7438 1.802337 CGTCAGAGTCCCCAACGACA 61.802 60.000 0.00 0.00 35.45 4.35
3571 7439 1.080705 CGTCAGAGTCCCCAACGAC 60.081 63.158 0.00 0.00 35.45 4.34
3572 7440 1.529948 ACGTCAGAGTCCCCAACGA 60.530 57.895 10.10 0.00 37.13 3.85
3573 7441 1.372997 CACGTCAGAGTCCCCAACG 60.373 63.158 0.00 0.00 39.16 4.10
3574 7442 2.046938 TCACGTCAGAGTCCCCAAC 58.953 57.895 0.00 0.00 0.00 3.77
3575 7443 4.611119 TCACGTCAGAGTCCCCAA 57.389 55.556 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.