Multiple sequence alignment - TraesCS5D01G403800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G403800 chr5D 100.000 5065 0 0 1 5065 469268540 469273604 0.000000e+00 9354.0
1 TraesCS5D01G403800 chr5D 99.034 621 6 0 1 621 469250049 469250669 0.000000e+00 1114.0
2 TraesCS5D01G403800 chr5D 85.363 854 106 12 3233 4071 469236238 469237087 0.000000e+00 867.0
3 TraesCS5D01G403800 chr5D 85.414 857 98 21 3232 4071 469242845 469243691 0.000000e+00 865.0
4 TraesCS5D01G403800 chr5D 80.507 513 74 14 1001 1488 469235392 469235903 2.230000e-98 370.0
5 TraesCS5D01G403800 chr5D 79.887 532 63 24 990 1501 469284688 469285195 2.900000e-92 350.0
6 TraesCS5D01G403800 chr5D 82.661 248 35 7 3710 3952 469245801 469246045 3.970000e-51 213.0
7 TraesCS5D01G403800 chr5D 88.976 127 8 5 47 172 2134692 2134813 8.780000e-33 152.0
8 TraesCS5D01G403800 chr5B 94.346 1521 58 13 3067 4573 576245067 576246573 0.000000e+00 2307.0
9 TraesCS5D01G403800 chr5B 92.607 1055 42 15 1905 2953 576243758 576244782 0.000000e+00 1483.0
10 TraesCS5D01G403800 chr5B 92.892 1013 46 15 669 1665 576242529 576243531 0.000000e+00 1448.0
11 TraesCS5D01G403800 chr5B 95.118 635 27 4 1 631 576228800 576229434 0.000000e+00 998.0
12 TraesCS5D01G403800 chr5B 83.041 855 118 19 3233 4071 576214377 576215220 0.000000e+00 750.0
13 TraesCS5D01G403800 chr5B 82.391 778 106 22 3233 3995 576223264 576224025 0.000000e+00 649.0
14 TraesCS5D01G403800 chr5B 83.488 539 77 8 3116 3646 576257255 576257789 4.560000e-135 492.0
15 TraesCS5D01G403800 chr5B 83.178 428 65 6 1001 1423 576221459 576221884 7.950000e-103 385.0
16 TraesCS5D01G403800 chr5B 80.114 528 69 19 990 1501 576256544 576257051 1.340000e-95 361.0
17 TraesCS5D01G403800 chr5A 88.071 1400 106 30 2978 4368 589372561 589373908 0.000000e+00 1604.0
18 TraesCS5D01G403800 chr5A 86.661 1267 94 38 3085 4341 589337399 589338600 0.000000e+00 1334.0
19 TraesCS5D01G403800 chr5A 90.599 734 47 13 772 1487 589334431 589335160 0.000000e+00 953.0
20 TraesCS5D01G403800 chr5A 96.168 548 17 2 983 1529 589366349 589366893 0.000000e+00 893.0
21 TraesCS5D01G403800 chr5A 84.981 526 66 8 3116 3633 589579772 589580292 5.810000e-144 521.0
22 TraesCS5D01G403800 chr5A 87.816 435 33 12 1432 1861 589370666 589371085 4.560000e-135 492.0
23 TraesCS5D01G403800 chr5A 85.989 364 44 7 3713 4071 589316348 589316709 2.860000e-102 383.0
24 TraesCS5D01G403800 chr5A 85.756 344 25 13 1524 1861 589368542 589368867 4.860000e-90 342.0
25 TraesCS5D01G403800 chr5A 79.065 535 66 22 993 1501 589579097 589579611 4.890000e-85 326.0
26 TraesCS5D01G403800 chr5A 79.126 412 75 7 1918 2321 589371165 589371573 1.800000e-69 274.0
27 TraesCS5D01G403800 chr5A 74.923 323 26 25 4024 4341 589370053 589370325 4.170000e-16 97.1
28 TraesCS5D01G403800 chrUn 99.656 582 0 1 1 582 345199428 345200007 0.000000e+00 1062.0
29 TraesCS5D01G403800 chr7B 80.754 982 144 30 3122 4076 120791379 120790416 0.000000e+00 725.0
30 TraesCS5D01G403800 chr7B 79.359 499 73 10 999 1488 120792098 120791621 1.760000e-84 324.0
31 TraesCS5D01G403800 chr7D 79.359 499 73 12 999 1488 160015640 160015163 1.760000e-84 324.0
32 TraesCS5D01G403800 chr7D 92.708 192 12 2 4873 5064 575618443 575618632 5.000000e-70 276.0
33 TraesCS5D01G403800 chr7A 92.746 193 12 2 4873 5065 35161784 35161594 1.390000e-70 278.0
34 TraesCS5D01G403800 chr7A 86.239 109 10 3 46 150 109163603 109163496 4.140000e-21 113.0
35 TraesCS5D01G403800 chr7A 92.857 42 3 0 10 51 137775540 137775581 1.520000e-05 62.1
36 TraesCS5D01G403800 chr4A 92.708 192 12 2 4873 5064 713410402 713410591 5.000000e-70 276.0
37 TraesCS5D01G403800 chr3D 91.710 193 15 1 4874 5065 63168796 63168604 3.010000e-67 267.0
38 TraesCS5D01G403800 chr3D 84.375 128 15 5 48 174 593240396 593240519 2.480000e-23 121.0
39 TraesCS5D01G403800 chr1D 91.710 193 15 1 4873 5065 258590868 258591059 3.010000e-67 267.0
40 TraesCS5D01G403800 chr1D 81.203 133 15 8 46 172 493364802 493364930 1.160000e-16 99.0
41 TraesCS5D01G403800 chr3B 91.710 193 12 2 4873 5065 154295992 154295804 1.080000e-66 265.0
42 TraesCS5D01G403800 chr3B 91.282 195 14 2 4871 5065 265869468 265869277 3.890000e-66 263.0
43 TraesCS5D01G403800 chr2B 91.710 193 12 3 4873 5065 620786857 620786669 1.080000e-66 265.0
44 TraesCS5D01G403800 chr1B 90.148 203 17 3 4864 5065 678852334 678852534 1.400000e-65 261.0
45 TraesCS5D01G403800 chr2D 85.938 128 14 4 46 172 520585238 520585114 3.180000e-27 134.0
46 TraesCS5D01G403800 chr2D 78.676 136 22 6 1604 1734 28557563 28557696 3.250000e-12 84.2
47 TraesCS5D01G403800 chr2D 90.000 50 5 0 4819 4868 5746182 5746133 1.180000e-06 65.8
48 TraesCS5D01G403800 chr4B 86.325 117 12 4 46 160 404930223 404930337 1.910000e-24 124.0
49 TraesCS5D01G403800 chr6B 90.741 54 2 1 1 51 678551498 678551445 9.100000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G403800 chr5D 469268540 469273604 5064 False 9354.000000 9354 100.000000 1 5065 1 chr5D.!!$F3 5064
1 TraesCS5D01G403800 chr5D 469250049 469250669 620 False 1114.000000 1114 99.034000 1 621 1 chr5D.!!$F2 620
2 TraesCS5D01G403800 chr5D 469235392 469237087 1695 False 618.500000 867 82.935000 1001 4071 2 chr5D.!!$F5 3070
3 TraesCS5D01G403800 chr5D 469242845 469246045 3200 False 539.000000 865 84.037500 3232 4071 2 chr5D.!!$F6 839
4 TraesCS5D01G403800 chr5D 469284688 469285195 507 False 350.000000 350 79.887000 990 1501 1 chr5D.!!$F4 511
5 TraesCS5D01G403800 chr5B 576242529 576246573 4044 False 1746.000000 2307 93.281667 669 4573 3 chr5B.!!$F4 3904
6 TraesCS5D01G403800 chr5B 576228800 576229434 634 False 998.000000 998 95.118000 1 631 1 chr5B.!!$F2 630
7 TraesCS5D01G403800 chr5B 576214377 576215220 843 False 750.000000 750 83.041000 3233 4071 1 chr5B.!!$F1 838
8 TraesCS5D01G403800 chr5B 576221459 576224025 2566 False 517.000000 649 82.784500 1001 3995 2 chr5B.!!$F3 2994
9 TraesCS5D01G403800 chr5B 576256544 576257789 1245 False 426.500000 492 81.801000 990 3646 2 chr5B.!!$F5 2656
10 TraesCS5D01G403800 chr5A 589334431 589338600 4169 False 1143.500000 1334 88.630000 772 4341 2 chr5A.!!$F2 3569
11 TraesCS5D01G403800 chr5A 589366349 589373908 7559 False 617.016667 1604 85.310000 983 4368 6 chr5A.!!$F3 3385
12 TraesCS5D01G403800 chr5A 589579097 589580292 1195 False 423.500000 521 82.023000 993 3633 2 chr5A.!!$F4 2640
13 TraesCS5D01G403800 chrUn 345199428 345200007 579 False 1062.000000 1062 99.656000 1 582 1 chrUn.!!$F1 581
14 TraesCS5D01G403800 chr7B 120790416 120792098 1682 True 524.500000 725 80.056500 999 4076 2 chr7B.!!$R1 3077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 786 0.037790 AGCTGAAACTCCTCGCTGAC 60.038 55.0 0.00 0.0 0.0 3.51 F
944 960 0.114560 TCCGTTTCTCTCCCCACTCT 59.885 55.0 0.00 0.0 0.0 3.24 F
2104 6730 0.175760 TGAAGGCCGCAGTAGTCATC 59.824 55.0 0.00 0.0 0.0 2.92 F
2952 9570 0.242017 AAACTCTGCAGCAATTCCGC 59.758 50.0 9.47 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 6731 0.108138 AGATCCCGTTTCAAGAGGCG 60.108 55.000 0.0 0.0 0.0 5.52 R
2822 9349 2.026822 ACTTGAGTGGGCGAATGAGATT 60.027 45.455 0.0 0.0 0.0 2.40 R
3031 9649 0.030638 GGCAAAAGTCGCAAAGCTGA 59.969 50.000 0.0 0.0 0.0 4.26 R
4396 12161 0.031010 ACACATCCTCCCCCTACTCC 60.031 60.000 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
582 587 6.989659 AGTCGTGTACCTTTTCTCTCAAATA 58.010 36.000 0.00 0.00 0.00 1.40
617 622 3.898123 TCTTCCTCAAGCTCTACTGTGTT 59.102 43.478 0.00 0.00 0.00 3.32
626 631 3.118775 AGCTCTACTGTGTTTGTGTGTGA 60.119 43.478 0.00 0.00 0.00 3.58
631 636 2.483877 ACTGTGTTTGTGTGTGAGTGTG 59.516 45.455 0.00 0.00 0.00 3.82
632 637 2.483877 CTGTGTTTGTGTGTGAGTGTGT 59.516 45.455 0.00 0.00 0.00 3.72
633 638 2.225255 TGTGTTTGTGTGTGAGTGTGTG 59.775 45.455 0.00 0.00 0.00 3.82
634 639 2.225491 GTGTTTGTGTGTGAGTGTGTGT 59.775 45.455 0.00 0.00 0.00 3.72
635 640 2.225255 TGTTTGTGTGTGAGTGTGTGTG 59.775 45.455 0.00 0.00 0.00 3.82
636 641 2.177394 TTGTGTGTGAGTGTGTGTGT 57.823 45.000 0.00 0.00 0.00 3.72
637 642 1.437625 TGTGTGTGAGTGTGTGTGTG 58.562 50.000 0.00 0.00 0.00 3.82
638 643 1.270571 TGTGTGTGAGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
639 644 1.128507 GTGTGTGAGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
640 645 1.270571 TGTGTGAGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
641 646 1.128507 GTGTGAGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
642 647 1.270571 TGTGAGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
643 648 1.128507 GTGAGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
644 649 1.270571 TGAGTGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
645 650 1.128507 GAGTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
646 651 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
647 652 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
648 653 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
649 654 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
650 655 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
651 656 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
652 657 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
653 658 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
654 659 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
655 660 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
656 661 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
657 662 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
658 663 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
659 664 2.031595 TGTGTGTGTGTGTGTGTGTTTC 60.032 45.455 0.00 0.00 0.00 2.78
660 665 2.225491 GTGTGTGTGTGTGTGTGTTTCT 59.775 45.455 0.00 0.00 0.00 2.52
661 666 2.881513 TGTGTGTGTGTGTGTGTTTCTT 59.118 40.909 0.00 0.00 0.00 2.52
662 667 3.316588 TGTGTGTGTGTGTGTGTTTCTTT 59.683 39.130 0.00 0.00 0.00 2.52
663 668 3.911964 GTGTGTGTGTGTGTGTTTCTTTC 59.088 43.478 0.00 0.00 0.00 2.62
664 669 3.818210 TGTGTGTGTGTGTGTTTCTTTCT 59.182 39.130 0.00 0.00 0.00 2.52
665 670 4.277174 TGTGTGTGTGTGTGTTTCTTTCTT 59.723 37.500 0.00 0.00 0.00 2.52
666 671 5.219633 GTGTGTGTGTGTGTTTCTTTCTTT 58.780 37.500 0.00 0.00 0.00 2.52
667 672 5.689961 GTGTGTGTGTGTGTTTCTTTCTTTT 59.310 36.000 0.00 0.00 0.00 2.27
671 676 6.016693 TGTGTGTGTGTTTCTTTCTTTTCTGA 60.017 34.615 0.00 0.00 0.00 3.27
781 786 0.037790 AGCTGAAACTCCTCGCTGAC 60.038 55.000 0.00 0.00 0.00 3.51
936 952 5.733937 GCTTATCAGTACCTCCGTTTCTCTC 60.734 48.000 0.00 0.00 0.00 3.20
937 953 2.444421 TCAGTACCTCCGTTTCTCTCC 58.556 52.381 0.00 0.00 0.00 3.71
939 955 0.822811 GTACCTCCGTTTCTCTCCCC 59.177 60.000 0.00 0.00 0.00 4.81
942 958 0.905337 CCTCCGTTTCTCTCCCCACT 60.905 60.000 0.00 0.00 0.00 4.00
943 959 0.533032 CTCCGTTTCTCTCCCCACTC 59.467 60.000 0.00 0.00 0.00 3.51
944 960 0.114560 TCCGTTTCTCTCCCCACTCT 59.885 55.000 0.00 0.00 0.00 3.24
945 961 0.533032 CCGTTTCTCTCCCCACTCTC 59.467 60.000 0.00 0.00 0.00 3.20
946 962 1.551452 CGTTTCTCTCCCCACTCTCT 58.449 55.000 0.00 0.00 0.00 3.10
960 976 3.190079 CACTCTCTCTCTCTCTCTCACG 58.810 54.545 0.00 0.00 0.00 4.35
970 986 1.271446 CTCTCTCACGCACACACACG 61.271 60.000 0.00 0.00 0.00 4.49
1304 1358 2.022240 GACCTCATCAGGGAGACGGC 62.022 65.000 0.00 0.00 45.53 5.68
1305 1359 1.760086 CCTCATCAGGGAGACGGCT 60.760 63.158 0.00 0.00 37.05 5.52
1321 1408 4.148825 CTGCGTCCGGGGAGAAGG 62.149 72.222 0.00 0.00 0.00 3.46
1529 2241 7.122055 CCACTGCCTACTTTCCATTGTTTATAA 59.878 37.037 0.00 0.00 0.00 0.98
1983 6609 8.914328 TTACTTCGAAAATCATACACGTCATA 57.086 30.769 0.00 0.00 0.00 2.15
2094 6720 2.182537 CCATGCTTTGAAGGCCGC 59.817 61.111 0.00 0.00 0.00 6.53
2100 6726 0.955919 GCTTTGAAGGCCGCAGTAGT 60.956 55.000 0.00 0.00 0.00 2.73
2101 6727 1.079503 CTTTGAAGGCCGCAGTAGTC 58.920 55.000 0.00 0.00 0.00 2.59
2102 6728 0.394938 TTTGAAGGCCGCAGTAGTCA 59.605 50.000 0.00 0.00 0.00 3.41
2103 6729 0.613260 TTGAAGGCCGCAGTAGTCAT 59.387 50.000 0.00 0.00 0.00 3.06
2104 6730 0.175760 TGAAGGCCGCAGTAGTCATC 59.824 55.000 0.00 0.00 0.00 2.92
2105 6731 0.530870 GAAGGCCGCAGTAGTCATCC 60.531 60.000 0.00 0.00 0.00 3.51
2106 6732 2.279517 GGCCGCAGTAGTCATCCG 60.280 66.667 0.00 0.00 0.00 4.18
2107 6733 2.962253 GCCGCAGTAGTCATCCGC 60.962 66.667 0.00 0.00 0.00 5.54
2108 6734 2.279517 CCGCAGTAGTCATCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
2109 6735 2.786495 CCGCAGTAGTCATCCGCCT 61.786 63.158 0.00 0.00 0.00 5.52
2110 6736 1.299468 CGCAGTAGTCATCCGCCTC 60.299 63.158 0.00 0.00 0.00 4.70
2111 6737 1.729470 CGCAGTAGTCATCCGCCTCT 61.729 60.000 0.00 0.00 0.00 3.69
2112 6738 0.461961 GCAGTAGTCATCCGCCTCTT 59.538 55.000 0.00 0.00 0.00 2.85
2113 6739 1.804372 GCAGTAGTCATCCGCCTCTTG 60.804 57.143 0.00 0.00 0.00 3.02
2114 6740 1.751351 CAGTAGTCATCCGCCTCTTGA 59.249 52.381 0.00 0.00 0.00 3.02
2115 6741 2.166459 CAGTAGTCATCCGCCTCTTGAA 59.834 50.000 0.00 0.00 0.00 2.69
2116 6742 2.832129 AGTAGTCATCCGCCTCTTGAAA 59.168 45.455 0.00 0.00 0.00 2.69
2117 6743 2.100605 AGTCATCCGCCTCTTGAAAC 57.899 50.000 0.00 0.00 0.00 2.78
2118 6744 0.721718 GTCATCCGCCTCTTGAAACG 59.278 55.000 0.00 0.00 0.00 3.60
2119 6745 0.391130 TCATCCGCCTCTTGAAACGG 60.391 55.000 0.00 0.00 46.97 4.44
2120 6746 1.078426 ATCCGCCTCTTGAAACGGG 60.078 57.895 9.94 0.00 45.65 5.28
2121 6747 1.550130 ATCCGCCTCTTGAAACGGGA 61.550 55.000 9.94 0.00 45.65 5.14
2122 6748 1.078426 CCGCCTCTTGAAACGGGAT 60.078 57.895 0.00 0.00 41.95 3.85
2201 6850 3.650942 ACATTACTTCTCCACCTGTCCAA 59.349 43.478 0.00 0.00 0.00 3.53
2279 6928 2.092429 ACCGCACTATGATCCAACCAAT 60.092 45.455 0.00 0.00 0.00 3.16
2281 6930 3.243168 CCGCACTATGATCCAACCAATTG 60.243 47.826 0.00 0.00 35.40 2.32
2329 6978 4.323792 CCCAAGATCTTAAGAGAGCCAACA 60.324 45.833 7.86 0.00 39.11 3.33
2361 7035 2.070783 TGTCGTTGGAATCGGTTTAGC 58.929 47.619 0.00 0.00 0.00 3.09
2382 7056 0.531200 AAAGGGTCGCTACTTCGAGG 59.469 55.000 0.00 0.00 39.34 4.63
2430 7334 6.238130 GCGGAACATCTACAGATTTAGAAACC 60.238 42.308 0.00 0.00 31.78 3.27
2636 7937 3.751175 TCTAAGAGGCAAATTCACGTTGG 59.249 43.478 0.00 0.00 0.00 3.77
2645 7946 4.671766 GCAAATTCACGTTGGGTCAGATAC 60.672 45.833 0.00 0.00 0.00 2.24
2692 7998 9.272901 CGAACTAACCACAAATTACATGTTATG 57.727 33.333 2.30 0.90 0.00 1.90
2716 8024 7.937704 TGTCATTTCGAATTAAATTTTGAGCG 58.062 30.769 0.00 0.00 0.00 5.03
2813 9340 6.169800 TGTTTGATTTCCGACATCTGTATCA 58.830 36.000 0.00 0.00 0.00 2.15
2822 9349 3.689161 CGACATCTGTATCAAAAGGCCAA 59.311 43.478 5.01 0.00 0.00 4.52
2951 9569 2.712057 AAAACTCTGCAGCAATTCCG 57.288 45.000 9.47 0.00 0.00 4.30
2952 9570 0.242017 AAACTCTGCAGCAATTCCGC 59.758 50.000 9.47 0.00 0.00 5.54
2953 9571 1.589716 AACTCTGCAGCAATTCCGCC 61.590 55.000 9.47 0.00 0.00 6.13
2954 9572 2.033911 TCTGCAGCAATTCCGCCA 59.966 55.556 9.47 0.00 0.00 5.69
2955 9573 1.588824 CTCTGCAGCAATTCCGCCAA 61.589 55.000 9.47 0.00 0.00 4.52
2956 9574 1.444895 CTGCAGCAATTCCGCCAAC 60.445 57.895 0.00 0.00 0.00 3.77
2960 9578 1.067915 GCAGCAATTCCGCCAACTAAA 60.068 47.619 0.00 0.00 0.00 1.85
3048 9715 2.154389 GCATTCAGCTTTGCGACTTTTG 59.846 45.455 0.00 0.00 41.15 2.44
3345 10248 1.153549 GTTCGCCGATCAGGAGCTT 60.154 57.895 7.64 0.00 45.00 3.74
3591 10497 3.774528 TTCCAGAGCCGCATCGCT 61.775 61.111 0.00 0.00 43.42 4.93
3593 10499 4.519437 CCAGAGCCGCATCGCTGA 62.519 66.667 7.36 0.00 39.87 4.26
3660 10579 0.464036 TGTCAAGAACTGTGCGTCCT 59.536 50.000 0.00 0.00 0.00 3.85
3661 10580 1.684450 TGTCAAGAACTGTGCGTCCTA 59.316 47.619 0.00 0.00 0.00 2.94
3665 10584 1.174783 AGAACTGTGCGTCCTATCGT 58.825 50.000 0.00 0.00 0.00 3.73
3672 10591 1.063649 GCGTCCTATCGTCGCTCAA 59.936 57.895 0.00 0.00 45.29 3.02
3794 10725 1.056700 CGATGGAGGGGGTGAGGAAT 61.057 60.000 0.00 0.00 0.00 3.01
3973 10910 1.007154 GAATCGCGGAGAGGGTAGC 60.007 63.158 6.13 0.00 0.00 3.58
4087 11032 6.925718 TGAGCTGCATTTCACTATATACTGTC 59.074 38.462 1.02 0.00 0.00 3.51
4088 11033 7.060383 AGCTGCATTTCACTATATACTGTCT 57.940 36.000 1.02 0.00 0.00 3.41
4089 11034 6.927936 AGCTGCATTTCACTATATACTGTCTG 59.072 38.462 1.02 0.00 0.00 3.51
4090 11035 6.703607 GCTGCATTTCACTATATACTGTCTGT 59.296 38.462 0.00 0.00 0.00 3.41
4091 11036 7.095857 GCTGCATTTCACTATATACTGTCTGTC 60.096 40.741 0.00 0.00 0.00 3.51
4092 11037 7.781056 TGCATTTCACTATATACTGTCTGTCA 58.219 34.615 0.00 0.00 0.00 3.58
4095 11040 9.242477 CATTTCACTATATACTGTCTGTCACTG 57.758 37.037 0.00 0.00 0.00 3.66
4171 11702 1.383456 TTGTGCACGCTTTTCTGGCT 61.383 50.000 13.13 0.00 0.00 4.75
4315 12078 5.220340 CGATTTTAACCTGCTAACTGTACGG 60.220 44.000 0.00 0.00 0.00 4.02
4321 12086 4.251268 ACCTGCTAACTGTACGGAATTTC 58.749 43.478 9.17 0.00 0.00 2.17
4403 12168 6.743575 CAAATAGGTTGTGAAAGGAGTAGG 57.256 41.667 0.00 0.00 32.08 3.18
4414 12179 0.266152 AGGAGTAGGGGGAGGATGTG 59.734 60.000 0.00 0.00 0.00 3.21
4438 12203 4.766007 GCACGTGCATTCATAGACATAAG 58.234 43.478 34.52 0.00 41.59 1.73
4439 12204 4.766007 CACGTGCATTCATAGACATAAGC 58.234 43.478 0.82 0.00 0.00 3.09
4462 12234 6.978659 AGCGTATATGCATATATGTAAGCGTT 59.021 34.615 32.11 22.58 35.48 4.84
4470 12242 6.086222 GCATATATGTAAGCGTTTGGGATTG 58.914 40.000 14.14 0.00 0.00 2.67
4481 12253 4.393680 GCGTTTGGGATTGTACTATGTTCA 59.606 41.667 0.00 0.00 0.00 3.18
4578 12355 3.578978 TGGTACACTCCCAACTTACAGA 58.421 45.455 0.00 0.00 0.00 3.41
4579 12356 3.322828 TGGTACACTCCCAACTTACAGAC 59.677 47.826 0.00 0.00 0.00 3.51
4580 12357 3.322828 GGTACACTCCCAACTTACAGACA 59.677 47.826 0.00 0.00 0.00 3.41
4581 12358 4.202284 GGTACACTCCCAACTTACAGACAA 60.202 45.833 0.00 0.00 0.00 3.18
4582 12359 4.706842 ACACTCCCAACTTACAGACAAT 57.293 40.909 0.00 0.00 0.00 2.71
4583 12360 5.818678 ACACTCCCAACTTACAGACAATA 57.181 39.130 0.00 0.00 0.00 1.90
4584 12361 6.182507 ACACTCCCAACTTACAGACAATAA 57.817 37.500 0.00 0.00 0.00 1.40
4585 12362 6.597562 ACACTCCCAACTTACAGACAATAAA 58.402 36.000 0.00 0.00 0.00 1.40
4586 12363 7.231467 ACACTCCCAACTTACAGACAATAAAT 58.769 34.615 0.00 0.00 0.00 1.40
4587 12364 7.724061 ACACTCCCAACTTACAGACAATAAATT 59.276 33.333 0.00 0.00 0.00 1.82
4588 12365 8.576442 CACTCCCAACTTACAGACAATAAATTT 58.424 33.333 0.00 0.00 0.00 1.82
4589 12366 9.143155 ACTCCCAACTTACAGACAATAAATTTT 57.857 29.630 0.00 0.00 0.00 1.82
4603 12380 8.920509 ACAATAAATTTTAACTCCATAACCGC 57.079 30.769 0.00 0.00 0.00 5.68
4604 12381 8.524487 ACAATAAATTTTAACTCCATAACCGCA 58.476 29.630 0.00 0.00 0.00 5.69
4605 12382 9.528018 CAATAAATTTTAACTCCATAACCGCAT 57.472 29.630 0.00 0.00 0.00 4.73
4606 12383 9.744468 AATAAATTTTAACTCCATAACCGCATC 57.256 29.630 0.00 0.00 0.00 3.91
4607 12384 7.404671 AAATTTTAACTCCATAACCGCATCT 57.595 32.000 0.00 0.00 0.00 2.90
4608 12385 8.514330 AAATTTTAACTCCATAACCGCATCTA 57.486 30.769 0.00 0.00 0.00 1.98
4609 12386 6.913873 TTTTAACTCCATAACCGCATCTAC 57.086 37.500 0.00 0.00 0.00 2.59
4610 12387 3.470645 AACTCCATAACCGCATCTACC 57.529 47.619 0.00 0.00 0.00 3.18
4611 12388 2.394632 ACTCCATAACCGCATCTACCA 58.605 47.619 0.00 0.00 0.00 3.25
4612 12389 2.769663 ACTCCATAACCGCATCTACCAA 59.230 45.455 0.00 0.00 0.00 3.67
4613 12390 3.181465 ACTCCATAACCGCATCTACCAAG 60.181 47.826 0.00 0.00 0.00 3.61
4614 12391 3.035363 TCCATAACCGCATCTACCAAGA 58.965 45.455 0.00 0.00 35.80 3.02
4615 12392 3.646162 TCCATAACCGCATCTACCAAGAT 59.354 43.478 0.00 0.00 43.54 2.40
4616 12393 4.102524 TCCATAACCGCATCTACCAAGATT 59.897 41.667 0.00 0.00 40.65 2.40
4617 12394 5.305902 TCCATAACCGCATCTACCAAGATTA 59.694 40.000 0.00 0.00 40.65 1.75
4618 12395 6.013725 TCCATAACCGCATCTACCAAGATTAT 60.014 38.462 0.00 0.00 40.65 1.28
4619 12396 6.092670 CCATAACCGCATCTACCAAGATTATG 59.907 42.308 0.00 0.00 40.65 1.90
4620 12397 3.403038 ACCGCATCTACCAAGATTATGC 58.597 45.455 0.00 0.00 40.65 3.14
4621 12398 3.071602 ACCGCATCTACCAAGATTATGCT 59.928 43.478 0.00 0.00 40.65 3.79
4622 12399 4.283467 ACCGCATCTACCAAGATTATGCTA 59.717 41.667 0.00 0.00 40.65 3.49
4623 12400 5.046304 ACCGCATCTACCAAGATTATGCTAT 60.046 40.000 0.00 0.00 40.65 2.97
4624 12401 6.154534 ACCGCATCTACCAAGATTATGCTATA 59.845 38.462 0.00 0.00 40.65 1.31
4625 12402 6.477033 CCGCATCTACCAAGATTATGCTATAC 59.523 42.308 0.00 0.00 40.65 1.47
4626 12403 7.261325 CGCATCTACCAAGATTATGCTATACT 58.739 38.462 0.00 0.00 40.65 2.12
4627 12404 7.433719 CGCATCTACCAAGATTATGCTATACTC 59.566 40.741 0.00 0.00 40.65 2.59
4628 12405 8.474025 GCATCTACCAAGATTATGCTATACTCT 58.526 37.037 0.00 0.00 40.65 3.24
4644 12421 9.905713 TGCTATACTCTATTCATGAACCTTTTT 57.094 29.630 11.07 0.00 0.00 1.94
4685 12462 8.487028 AGGCTATATATTAAATAGTGCTGGTCC 58.513 37.037 0.00 0.00 30.91 4.46
4687 12464 9.892130 GCTATATATTAAATAGTGCTGGTCCTT 57.108 33.333 0.00 0.00 30.91 3.36
4692 12469 9.914834 ATATTAAATAGTGCTGGTCCTTTACAA 57.085 29.630 0.00 0.00 0.00 2.41
4693 12470 7.681939 TTAAATAGTGCTGGTCCTTTACAAG 57.318 36.000 0.00 0.00 31.51 3.16
4701 12478 2.092103 TGGTCCTTTACAAGCACACCTT 60.092 45.455 0.00 0.00 0.00 3.50
4703 12480 4.139038 GGTCCTTTACAAGCACACCTTTA 58.861 43.478 0.00 0.00 0.00 1.85
4704 12481 4.765339 GGTCCTTTACAAGCACACCTTTAT 59.235 41.667 0.00 0.00 0.00 1.40
4705 12482 5.941647 GGTCCTTTACAAGCACACCTTTATA 59.058 40.000 0.00 0.00 0.00 0.98
4706 12483 6.093633 GGTCCTTTACAAGCACACCTTTATAG 59.906 42.308 0.00 0.00 0.00 1.31
4707 12484 6.877322 GTCCTTTACAAGCACACCTTTATAGA 59.123 38.462 0.00 0.00 0.00 1.98
4708 12485 7.389607 GTCCTTTACAAGCACACCTTTATAGAA 59.610 37.037 0.00 0.00 0.00 2.10
4709 12486 7.940137 TCCTTTACAAGCACACCTTTATAGAAA 59.060 33.333 0.00 0.00 0.00 2.52
4710 12487 8.573035 CCTTTACAAGCACACCTTTATAGAAAA 58.427 33.333 0.00 0.00 0.00 2.29
4711 12488 9.959749 CTTTACAAGCACACCTTTATAGAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
4712 12489 9.959749 TTTACAAGCACACCTTTATAGAAAAAG 57.040 29.630 0.00 0.00 36.43 2.27
4713 12490 7.817418 ACAAGCACACCTTTATAGAAAAAGA 57.183 32.000 0.00 0.00 38.50 2.52
4715 12492 8.691797 ACAAGCACACCTTTATAGAAAAAGAAA 58.308 29.630 0.00 0.00 38.50 2.52
4736 12513 9.533831 AAGAAAAATACATCCACATCTTTAGGT 57.466 29.630 0.00 0.00 0.00 3.08
4737 12514 9.533831 AGAAAAATACATCCACATCTTTAGGTT 57.466 29.630 0.00 0.00 0.00 3.50
4738 12515 9.573133 GAAAAATACATCCACATCTTTAGGTTG 57.427 33.333 0.00 0.00 0.00 3.77
4739 12516 8.650143 AAAATACATCCACATCTTTAGGTTGT 57.350 30.769 0.00 0.00 38.50 3.32
4740 12517 7.865706 AATACATCCACATCTTTAGGTTGTC 57.134 36.000 0.00 0.00 36.85 3.18
4741 12518 4.253685 ACATCCACATCTTTAGGTTGTCG 58.746 43.478 0.00 0.00 31.52 4.35
4742 12519 4.020573 ACATCCACATCTTTAGGTTGTCGA 60.021 41.667 0.00 0.00 31.52 4.20
4743 12520 4.610605 TCCACATCTTTAGGTTGTCGAA 57.389 40.909 0.00 0.00 0.00 3.71
4745 12522 4.039973 TCCACATCTTTAGGTTGTCGAAGT 59.960 41.667 0.00 0.00 0.00 3.01
4746 12523 4.389077 CCACATCTTTAGGTTGTCGAAGTC 59.611 45.833 0.00 0.00 0.00 3.01
4747 12524 5.230942 CACATCTTTAGGTTGTCGAAGTCT 58.769 41.667 0.00 0.00 0.00 3.24
4748 12525 5.696724 CACATCTTTAGGTTGTCGAAGTCTT 59.303 40.000 0.00 0.00 0.00 3.01
4749 12526 5.927115 ACATCTTTAGGTTGTCGAAGTCTTC 59.073 40.000 2.18 2.18 0.00 2.87
4750 12527 5.786264 TCTTTAGGTTGTCGAAGTCTTCT 57.214 39.130 10.81 0.00 0.00 2.85
4751 12528 6.158023 TCTTTAGGTTGTCGAAGTCTTCTT 57.842 37.500 10.81 0.00 36.51 2.52
4752 12529 6.214399 TCTTTAGGTTGTCGAAGTCTTCTTC 58.786 40.000 10.81 4.38 44.55 2.87
4753 12530 3.388345 AGGTTGTCGAAGTCTTCTTCC 57.612 47.619 10.81 5.86 45.02 3.46
4754 12531 2.966516 AGGTTGTCGAAGTCTTCTTCCT 59.033 45.455 10.81 7.72 45.02 3.36
4755 12532 3.006003 AGGTTGTCGAAGTCTTCTTCCTC 59.994 47.826 10.81 0.00 45.02 3.71
4756 12533 3.006003 GGTTGTCGAAGTCTTCTTCCTCT 59.994 47.826 10.81 0.00 45.02 3.69
4757 12534 4.501743 GGTTGTCGAAGTCTTCTTCCTCTT 60.502 45.833 10.81 0.00 45.02 2.85
4758 12535 4.244425 TGTCGAAGTCTTCTTCCTCTTG 57.756 45.455 10.81 0.00 45.02 3.02
4759 12536 2.990514 GTCGAAGTCTTCTTCCTCTTGC 59.009 50.000 10.81 0.00 45.02 4.01
4760 12537 2.628178 TCGAAGTCTTCTTCCTCTTGCA 59.372 45.455 10.81 0.00 45.02 4.08
4761 12538 3.069586 TCGAAGTCTTCTTCCTCTTGCAA 59.930 43.478 10.81 0.00 45.02 4.08
4762 12539 3.185391 CGAAGTCTTCTTCCTCTTGCAAC 59.815 47.826 10.81 0.00 45.02 4.17
4763 12540 3.133141 AGTCTTCTTCCTCTTGCAACC 57.867 47.619 0.00 0.00 0.00 3.77
4764 12541 2.439507 AGTCTTCTTCCTCTTGCAACCA 59.560 45.455 0.00 0.00 0.00 3.67
4765 12542 3.073650 AGTCTTCTTCCTCTTGCAACCAT 59.926 43.478 0.00 0.00 0.00 3.55
4767 12544 3.072915 TCTTCTTCCTCTTGCAACCATCA 59.927 43.478 0.00 0.00 0.00 3.07
4769 12546 3.415212 TCTTCCTCTTGCAACCATCAAG 58.585 45.455 0.00 0.00 41.57 3.02
4772 12549 0.529378 CTCTTGCAACCATCAAGGGC 59.471 55.000 0.00 0.00 43.89 5.19
4773 12550 1.213537 CTTGCAACCATCAAGGGCG 59.786 57.895 0.00 0.00 43.89 6.13
4775 12552 4.481112 GCAACCATCAAGGGCGCG 62.481 66.667 0.00 0.00 43.89 6.86
4780 12557 4.170062 CATCAAGGGCGCGCAGTG 62.170 66.667 34.42 25.35 43.41 3.66
4781 12558 4.393155 ATCAAGGGCGCGCAGTGA 62.393 61.111 34.42 29.41 43.07 3.41
4789 12566 3.349006 CGCGCAGTGAGCAAACCT 61.349 61.111 19.19 0.00 46.13 3.50
4790 12567 2.896801 CGCGCAGTGAGCAAACCTT 61.897 57.895 19.19 0.00 46.13 3.50
4791 12568 1.370900 GCGCAGTGAGCAAACCTTG 60.371 57.895 14.47 0.00 46.13 3.61
4792 12569 2.024918 CGCAGTGAGCAAACCTTGT 58.975 52.632 0.00 0.00 46.13 3.16
4793 12570 1.225855 CGCAGTGAGCAAACCTTGTA 58.774 50.000 0.00 0.00 46.13 2.41
4795 12572 2.222027 GCAGTGAGCAAACCTTGTAGT 58.778 47.619 0.00 0.00 44.79 2.73
4796 12573 2.618709 GCAGTGAGCAAACCTTGTAGTT 59.381 45.455 0.00 0.00 44.79 2.24
4798 12575 2.618709 AGTGAGCAAACCTTGTAGTTGC 59.381 45.455 0.00 0.00 0.00 4.17
4799 12576 1.953686 TGAGCAAACCTTGTAGTTGCC 59.046 47.619 4.11 0.00 0.00 4.52
4800 12577 2.230660 GAGCAAACCTTGTAGTTGCCT 58.769 47.619 4.11 0.00 0.00 4.75
4802 12579 2.158608 AGCAAACCTTGTAGTTGCCTCT 60.159 45.455 4.11 0.00 0.00 3.69
4816 12593 1.445095 CCTCTGGGCCTTCATCTCG 59.555 63.158 4.53 0.00 0.00 4.04
4817 12594 1.045350 CCTCTGGGCCTTCATCTCGA 61.045 60.000 4.53 0.00 0.00 4.04
4818 12595 1.047002 CTCTGGGCCTTCATCTCGAT 58.953 55.000 4.53 0.00 0.00 3.59
4819 12596 2.242926 CTCTGGGCCTTCATCTCGATA 58.757 52.381 4.53 0.00 0.00 2.92
4820 12597 2.230992 CTCTGGGCCTTCATCTCGATAG 59.769 54.545 4.53 0.00 0.00 2.08
4838 12615 7.647907 TCGATAGAGTAACTTTGTTTCAACC 57.352 36.000 0.00 0.00 42.67 3.77
4839 12616 7.211573 TCGATAGAGTAACTTTGTTTCAACCA 58.788 34.615 0.00 0.00 42.67 3.67
4840 12617 7.711772 TCGATAGAGTAACTTTGTTTCAACCAA 59.288 33.333 0.00 0.00 42.67 3.67
4841 12618 8.009974 CGATAGAGTAACTTTGTTTCAACCAAG 58.990 37.037 2.70 2.70 36.62 3.61
4842 12619 6.451064 AGAGTAACTTTGTTTCAACCAAGG 57.549 37.500 8.05 0.00 36.34 3.61
4843 12620 6.184789 AGAGTAACTTTGTTTCAACCAAGGA 58.815 36.000 8.05 0.00 36.34 3.36
4844 12621 6.318900 AGAGTAACTTTGTTTCAACCAAGGAG 59.681 38.462 8.05 0.00 36.34 3.69
4846 12623 3.365472 ACTTTGTTTCAACCAAGGAGCT 58.635 40.909 8.05 0.00 36.34 4.09
4847 12624 3.769300 ACTTTGTTTCAACCAAGGAGCTT 59.231 39.130 8.05 0.00 36.34 3.74
4848 12625 3.799281 TTGTTTCAACCAAGGAGCTTG 57.201 42.857 0.00 0.00 40.75 4.01
4849 12626 2.733956 TGTTTCAACCAAGGAGCTTGT 58.266 42.857 0.00 0.00 39.58 3.16
4851 12628 3.882888 TGTTTCAACCAAGGAGCTTGTAG 59.117 43.478 0.00 0.00 39.58 2.74
4852 12629 4.134563 GTTTCAACCAAGGAGCTTGTAGA 58.865 43.478 0.00 0.00 39.58 2.59
4853 12630 4.431416 TTCAACCAAGGAGCTTGTAGAA 57.569 40.909 0.00 0.00 39.58 2.10
4854 12631 4.008074 TCAACCAAGGAGCTTGTAGAAG 57.992 45.455 0.00 0.00 39.58 2.85
4863 12640 2.460330 CTTGTAGAAGCAGTGGCCG 58.540 57.895 0.00 0.00 42.56 6.13
4865 12642 0.394938 TTGTAGAAGCAGTGGCCGAA 59.605 50.000 0.00 0.00 42.56 4.30
4866 12643 0.394938 TGTAGAAGCAGTGGCCGAAA 59.605 50.000 0.00 0.00 42.56 3.46
4867 12644 1.202710 TGTAGAAGCAGTGGCCGAAAA 60.203 47.619 0.00 0.00 42.56 2.29
4868 12645 1.464997 GTAGAAGCAGTGGCCGAAAAG 59.535 52.381 0.00 0.00 42.56 2.27
4869 12646 0.108585 AGAAGCAGTGGCCGAAAAGA 59.891 50.000 0.00 0.00 42.56 2.52
4870 12647 0.238553 GAAGCAGTGGCCGAAAAGAC 59.761 55.000 0.00 0.00 42.56 3.01
4871 12648 1.507141 AAGCAGTGGCCGAAAAGACG 61.507 55.000 0.00 0.00 42.56 4.18
4872 12649 2.251642 GCAGTGGCCGAAAAGACGT 61.252 57.895 0.00 0.00 0.00 4.34
4873 12650 1.782028 GCAGTGGCCGAAAAGACGTT 61.782 55.000 0.00 0.00 0.00 3.99
4874 12651 0.041312 CAGTGGCCGAAAAGACGTTG 60.041 55.000 0.00 0.00 0.00 4.10
4875 12652 0.463116 AGTGGCCGAAAAGACGTTGT 60.463 50.000 0.00 0.00 0.00 3.32
4876 12653 0.379316 GTGGCCGAAAAGACGTTGTT 59.621 50.000 0.00 0.00 0.00 2.83
4878 12655 0.658897 GGCCGAAAAGACGTTGTTCA 59.341 50.000 0.00 0.00 0.00 3.18
4879 12656 1.064357 GGCCGAAAAGACGTTGTTCAA 59.936 47.619 0.00 0.00 0.00 2.69
4880 12657 2.372350 GCCGAAAAGACGTTGTTCAAG 58.628 47.619 0.00 0.00 0.00 3.02
4881 12658 2.031191 GCCGAAAAGACGTTGTTCAAGA 59.969 45.455 0.00 0.00 0.00 3.02
4882 12659 3.486209 GCCGAAAAGACGTTGTTCAAGAA 60.486 43.478 0.00 0.00 0.00 2.52
4883 12660 4.654015 CCGAAAAGACGTTGTTCAAGAAA 58.346 39.130 0.00 0.00 0.00 2.52
4884 12661 5.270853 CCGAAAAGACGTTGTTCAAGAAAT 58.729 37.500 0.00 0.00 0.00 2.17
4885 12662 5.395486 CCGAAAAGACGTTGTTCAAGAAATC 59.605 40.000 0.00 0.00 0.00 2.17
4886 12663 5.112052 CGAAAAGACGTTGTTCAAGAAATCG 59.888 40.000 0.00 0.00 0.00 3.34
4887 12664 4.468095 AAGACGTTGTTCAAGAAATCGG 57.532 40.909 0.00 0.00 0.00 4.18
4888 12665 3.463944 AGACGTTGTTCAAGAAATCGGT 58.536 40.909 0.00 0.00 0.00 4.69
4890 12667 5.051816 AGACGTTGTTCAAGAAATCGGTAA 58.948 37.500 0.00 0.00 0.00 2.85
4891 12668 5.050567 AGACGTTGTTCAAGAAATCGGTAAC 60.051 40.000 0.00 0.00 0.00 2.50
4892 12669 4.812626 ACGTTGTTCAAGAAATCGGTAACT 59.187 37.500 0.00 0.00 0.00 2.24
4894 12671 5.449304 GTTGTTCAAGAAATCGGTAACTGG 58.551 41.667 0.00 0.00 0.00 4.00
4896 12673 5.856156 TGTTCAAGAAATCGGTAACTGGTA 58.144 37.500 0.00 0.00 0.00 3.25
4898 12675 4.501071 TCAAGAAATCGGTAACTGGTAGC 58.499 43.478 0.00 0.00 0.00 3.58
4899 12676 4.222145 TCAAGAAATCGGTAACTGGTAGCT 59.778 41.667 0.00 0.00 0.00 3.32
4900 12677 4.124851 AGAAATCGGTAACTGGTAGCTG 57.875 45.455 0.00 0.00 0.00 4.24
4901 12678 2.311124 AATCGGTAACTGGTAGCTGC 57.689 50.000 0.00 0.00 0.00 5.25
4902 12679 1.486211 ATCGGTAACTGGTAGCTGCT 58.514 50.000 7.57 7.57 0.00 4.24
4903 12680 0.815734 TCGGTAACTGGTAGCTGCTC 59.184 55.000 4.91 0.00 0.00 4.26
4904 12681 0.525668 CGGTAACTGGTAGCTGCTCG 60.526 60.000 4.91 0.00 0.00 5.03
4905 12682 0.179108 GGTAACTGGTAGCTGCTCGG 60.179 60.000 4.91 0.00 0.00 4.63
4906 12683 0.806492 GTAACTGGTAGCTGCTCGGC 60.806 60.000 4.91 0.00 0.00 5.54
4908 12685 3.465403 CTGGTAGCTGCTCGGCCT 61.465 66.667 4.91 0.00 0.00 5.19
4909 12686 3.729965 CTGGTAGCTGCTCGGCCTG 62.730 68.421 4.91 7.78 0.00 4.85
4911 12688 4.154347 GTAGCTGCTCGGCCTGCT 62.154 66.667 4.91 12.46 39.65 4.24
4912 12689 3.393970 TAGCTGCTCGGCCTGCTT 61.394 61.111 4.91 6.98 38.08 3.91
4913 12690 2.959484 TAGCTGCTCGGCCTGCTTT 61.959 57.895 4.91 6.70 38.08 3.51
4915 12692 3.437795 CTGCTCGGCCTGCTTTGG 61.438 66.667 16.66 3.64 0.00 3.28
4916 12693 3.907260 CTGCTCGGCCTGCTTTGGA 62.907 63.158 16.66 0.00 0.00 3.53
4918 12695 2.348998 CTCGGCCTGCTTTGGAGT 59.651 61.111 0.00 0.00 0.00 3.85
4919 12696 2.032528 TCGGCCTGCTTTGGAGTG 59.967 61.111 0.00 0.00 0.00 3.51
4920 12697 3.058160 CGGCCTGCTTTGGAGTGG 61.058 66.667 0.00 0.00 0.00 4.00
4921 12698 3.376918 GGCCTGCTTTGGAGTGGC 61.377 66.667 0.00 0.00 41.02 5.01
4922 12699 3.741476 GCCTGCTTTGGAGTGGCG 61.741 66.667 0.00 0.00 35.88 5.69
4923 12700 2.032528 CCTGCTTTGGAGTGGCGA 59.967 61.111 0.00 0.00 0.00 5.54
4924 12701 1.377725 CCTGCTTTGGAGTGGCGAT 60.378 57.895 0.00 0.00 0.00 4.58
4925 12702 0.962356 CCTGCTTTGGAGTGGCGATT 60.962 55.000 0.00 0.00 0.00 3.34
4926 12703 1.678728 CCTGCTTTGGAGTGGCGATTA 60.679 52.381 0.00 0.00 0.00 1.75
4927 12704 2.083774 CTGCTTTGGAGTGGCGATTAA 58.916 47.619 0.00 0.00 0.00 1.40
4928 12705 2.684881 CTGCTTTGGAGTGGCGATTAAT 59.315 45.455 0.00 0.00 0.00 1.40
4940 12717 2.856091 CGATTAATCGGTGAATCGGC 57.144 50.000 26.61 0.00 46.73 5.54
4942 12719 2.767505 GATTAATCGGTGAATCGGCCT 58.232 47.619 0.00 0.00 0.00 5.19
4943 12720 3.613193 CGATTAATCGGTGAATCGGCCTA 60.613 47.826 26.61 0.00 46.73 3.93
4944 12721 4.504858 GATTAATCGGTGAATCGGCCTAT 58.495 43.478 0.00 0.00 0.00 2.57
4945 12722 2.930826 AATCGGTGAATCGGCCTATT 57.069 45.000 1.35 1.35 0.00 1.73
4947 12724 4.345859 AATCGGTGAATCGGCCTATTAA 57.654 40.909 1.83 0.00 0.00 1.40
4950 12727 2.800544 CGGTGAATCGGCCTATTAACTG 59.199 50.000 15.40 13.28 0.00 3.16
4952 12729 3.181458 GGTGAATCGGCCTATTAACTGGA 60.181 47.826 15.40 0.00 0.00 3.86
4953 12730 4.505039 GGTGAATCGGCCTATTAACTGGAT 60.505 45.833 15.40 0.00 0.00 3.41
4955 12732 6.228258 GTGAATCGGCCTATTAACTGGATTA 58.772 40.000 9.79 0.00 0.00 1.75
4956 12733 6.708949 GTGAATCGGCCTATTAACTGGATTAA 59.291 38.462 9.79 0.00 37.18 1.40
4957 12734 7.390718 GTGAATCGGCCTATTAACTGGATTAAT 59.609 37.037 9.79 0.00 44.22 1.40
4958 12735 7.606456 TGAATCGGCCTATTAACTGGATTAATC 59.394 37.037 6.93 6.93 41.66 1.75
4959 12736 5.475719 TCGGCCTATTAACTGGATTAATCG 58.524 41.667 9.32 0.00 41.66 3.34
4960 12737 4.630069 CGGCCTATTAACTGGATTAATCGG 59.370 45.833 9.32 7.32 43.96 4.18
4961 12738 5.557866 GGCCTATTAACTGGATTAATCGGT 58.442 41.667 9.32 7.91 43.43 4.69
4962 12739 5.642491 GGCCTATTAACTGGATTAATCGGTC 59.358 44.000 9.32 5.67 43.43 4.79
4966 12743 2.884894 ACTGGATTAATCGGTCGACC 57.115 50.000 25.28 25.28 0.00 4.79
4967 12744 2.104967 ACTGGATTAATCGGTCGACCA 58.895 47.619 32.80 20.42 35.14 4.02
4968 12745 2.698797 ACTGGATTAATCGGTCGACCAT 59.301 45.455 32.80 21.65 35.14 3.55
4969 12746 3.134081 ACTGGATTAATCGGTCGACCATT 59.866 43.478 32.80 28.32 35.14 3.16
4970 12747 4.342951 ACTGGATTAATCGGTCGACCATTA 59.657 41.667 32.80 27.43 35.14 1.90
4971 12748 5.163385 ACTGGATTAATCGGTCGACCATTAA 60.163 40.000 31.59 31.59 35.52 1.40
4972 12749 5.051816 TGGATTAATCGGTCGACCATTAAC 58.948 41.667 31.85 26.74 34.74 2.01
4980 12757 2.363359 GGTCGACCATTAACCGGTAGAT 59.637 50.000 29.75 1.33 39.83 1.98
4981 12758 3.181472 GGTCGACCATTAACCGGTAGATT 60.181 47.826 29.75 0.00 39.83 2.40
4983 12760 5.451798 GGTCGACCATTAACCGGTAGATTAA 60.452 44.000 29.75 2.59 39.83 1.40
4984 12761 6.042143 GTCGACCATTAACCGGTAGATTAAA 58.958 40.000 8.00 0.00 39.83 1.52
4985 12762 6.703165 GTCGACCATTAACCGGTAGATTAAAT 59.297 38.462 8.00 0.00 39.83 1.40
4986 12763 7.867403 GTCGACCATTAACCGGTAGATTAAATA 59.133 37.037 8.00 0.00 39.83 1.40
4987 12764 8.084073 TCGACCATTAACCGGTAGATTAAATAG 58.916 37.037 8.00 0.00 36.69 1.73
4989 12766 8.266363 ACCATTAACCGGTAGATTAAATAGGA 57.734 34.615 8.00 0.00 34.02 2.94
4991 12768 8.996271 CCATTAACCGGTAGATTAAATAGGAAC 58.004 37.037 8.00 0.00 0.00 3.62
4992 12769 9.774413 CATTAACCGGTAGATTAAATAGGAACT 57.226 33.333 8.00 0.00 46.37 3.01
5045 12822 9.929180 TGTATTATACCATACTTTCATGCTCTC 57.071 33.333 0.00 0.00 31.73 3.20
5046 12823 9.929180 GTATTATACCATACTTTCATGCTCTCA 57.071 33.333 0.00 0.00 0.00 3.27
5049 12826 5.627182 ACCATACTTTCATGCTCTCATCT 57.373 39.130 0.00 0.00 0.00 2.90
5050 12827 6.737720 ACCATACTTTCATGCTCTCATCTA 57.262 37.500 0.00 0.00 0.00 1.98
5053 12830 7.160049 CCATACTTTCATGCTCTCATCTATGT 58.840 38.462 0.00 0.00 0.00 2.29
5054 12831 8.309656 CCATACTTTCATGCTCTCATCTATGTA 58.690 37.037 0.00 0.00 0.00 2.29
5055 12832 9.702494 CATACTTTCATGCTCTCATCTATGTAA 57.298 33.333 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
582 587 4.515028 TGAGGAAGATGCCATTTGAGAT 57.485 40.909 0.00 0.00 0.00 2.75
617 622 1.803555 CACACACACACTCACACACAA 59.196 47.619 0.00 0.00 0.00 3.33
626 631 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
631 636 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
632 637 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
633 638 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
634 639 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
635 640 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
636 641 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
637 642 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
638 643 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
639 644 2.225491 AGAAACACACACACACACACAC 59.775 45.455 0.00 0.00 0.00 3.82
640 645 2.499197 AGAAACACACACACACACACA 58.501 42.857 0.00 0.00 0.00 3.72
641 646 3.552604 AAGAAACACACACACACACAC 57.447 42.857 0.00 0.00 0.00 3.82
642 647 3.818210 AGAAAGAAACACACACACACACA 59.182 39.130 0.00 0.00 0.00 3.72
643 648 4.419522 AGAAAGAAACACACACACACAC 57.580 40.909 0.00 0.00 0.00 3.82
644 649 5.446143 AAAGAAAGAAACACACACACACA 57.554 34.783 0.00 0.00 0.00 3.72
645 650 6.088085 CAGAAAAGAAAGAAACACACACACAC 59.912 38.462 0.00 0.00 0.00 3.82
646 651 6.016693 TCAGAAAAGAAAGAAACACACACACA 60.017 34.615 0.00 0.00 0.00 3.72
647 652 6.378582 TCAGAAAAGAAAGAAACACACACAC 58.621 36.000 0.00 0.00 0.00 3.82
648 653 6.567687 TCAGAAAAGAAAGAAACACACACA 57.432 33.333 0.00 0.00 0.00 3.72
649 654 9.010366 GTTATCAGAAAAGAAAGAAACACACAC 57.990 33.333 0.00 0.00 0.00 3.82
650 655 8.956426 AGTTATCAGAAAAGAAAGAAACACACA 58.044 29.630 0.00 0.00 0.00 3.72
651 656 9.226345 CAGTTATCAGAAAAGAAAGAAACACAC 57.774 33.333 0.00 0.00 0.00 3.82
652 657 9.173021 TCAGTTATCAGAAAAGAAAGAAACACA 57.827 29.630 0.00 0.00 0.00 3.72
653 658 9.657121 CTCAGTTATCAGAAAAGAAAGAAACAC 57.343 33.333 0.00 0.00 0.00 3.32
654 659 8.345565 GCTCAGTTATCAGAAAAGAAAGAAACA 58.654 33.333 0.00 0.00 0.00 2.83
655 660 8.345565 TGCTCAGTTATCAGAAAAGAAAGAAAC 58.654 33.333 0.00 0.00 0.00 2.78
656 661 8.450578 TGCTCAGTTATCAGAAAAGAAAGAAA 57.549 30.769 0.00 0.00 0.00 2.52
657 662 7.308229 GCTGCTCAGTTATCAGAAAAGAAAGAA 60.308 37.037 0.00 0.00 0.00 2.52
658 663 6.148480 GCTGCTCAGTTATCAGAAAAGAAAGA 59.852 38.462 0.00 0.00 0.00 2.52
659 664 6.149142 AGCTGCTCAGTTATCAGAAAAGAAAG 59.851 38.462 0.00 0.00 0.00 2.62
660 665 6.000219 AGCTGCTCAGTTATCAGAAAAGAAA 59.000 36.000 0.00 0.00 0.00 2.52
661 666 5.410746 CAGCTGCTCAGTTATCAGAAAAGAA 59.589 40.000 0.00 0.00 0.00 2.52
662 667 4.934001 CAGCTGCTCAGTTATCAGAAAAGA 59.066 41.667 0.00 0.00 0.00 2.52
663 668 4.437121 GCAGCTGCTCAGTTATCAGAAAAG 60.437 45.833 31.33 0.00 38.21 2.27
664 669 3.438087 GCAGCTGCTCAGTTATCAGAAAA 59.562 43.478 31.33 0.00 38.21 2.29
665 670 3.005554 GCAGCTGCTCAGTTATCAGAAA 58.994 45.455 31.33 0.00 38.21 2.52
666 671 2.625737 GCAGCTGCTCAGTTATCAGAA 58.374 47.619 31.33 0.00 38.21 3.02
667 672 1.470458 CGCAGCTGCTCAGTTATCAGA 60.470 52.381 34.22 0.00 39.32 3.27
671 676 0.742281 CCACGCAGCTGCTCAGTTAT 60.742 55.000 34.22 9.62 39.32 1.89
702 707 1.204312 GGCTGCGTTGTCTCGTTTC 59.796 57.895 0.00 0.00 0.00 2.78
741 746 0.955919 CTTGGGCCTTTCGAGTCCAC 60.956 60.000 4.53 0.00 0.00 4.02
749 754 1.620822 TTCAGCTTCTTGGGCCTTTC 58.379 50.000 4.53 0.00 0.00 2.62
781 786 2.967599 TGATGGACACGAGGAATGAG 57.032 50.000 0.00 0.00 0.00 2.90
845 860 4.103103 GTTTTCGCTCTGCCCCGC 62.103 66.667 0.00 0.00 0.00 6.13
936 952 1.846439 AGAGAGAGAGAGAGAGTGGGG 59.154 57.143 0.00 0.00 0.00 4.96
937 953 2.505407 TGAGAGAGAGAGAGAGAGTGGG 59.495 54.545 0.00 0.00 0.00 4.61
939 955 3.190079 CGTGAGAGAGAGAGAGAGAGTG 58.810 54.545 0.00 0.00 0.00 3.51
942 958 1.552792 TGCGTGAGAGAGAGAGAGAGA 59.447 52.381 0.00 0.00 0.00 3.10
943 959 1.665679 GTGCGTGAGAGAGAGAGAGAG 59.334 57.143 0.00 0.00 0.00 3.20
944 960 1.002544 TGTGCGTGAGAGAGAGAGAGA 59.997 52.381 0.00 0.00 0.00 3.10
945 961 1.130373 GTGTGCGTGAGAGAGAGAGAG 59.870 57.143 0.00 0.00 0.00 3.20
946 962 1.160989 GTGTGCGTGAGAGAGAGAGA 58.839 55.000 0.00 0.00 0.00 3.10
970 986 1.669115 ACTGATGTGAGGTGCGTGC 60.669 57.895 0.00 0.00 0.00 5.34
1304 1358 4.148825 CCTTCTCCCCGGACGCAG 62.149 72.222 0.73 0.00 0.00 5.18
1305 1359 4.689549 TCCTTCTCCCCGGACGCA 62.690 66.667 0.73 0.00 0.00 5.24
1314 1368 0.035915 GCCACTTGACCTCCTTCTCC 60.036 60.000 0.00 0.00 0.00 3.71
1321 1408 1.216710 CGAGGAGCCACTTGACCTC 59.783 63.158 0.00 0.00 43.58 3.85
1565 3929 9.765295 AAACGGGAGGAGTATGTATATAAGTAT 57.235 33.333 0.00 0.00 0.00 2.12
1566 3930 9.236006 GAAACGGGAGGAGTATGTATATAAGTA 57.764 37.037 0.00 0.00 0.00 2.24
1567 3931 7.727186 TGAAACGGGAGGAGTATGTATATAAGT 59.273 37.037 0.00 0.00 0.00 2.24
1568 3932 8.118976 TGAAACGGGAGGAGTATGTATATAAG 57.881 38.462 0.00 0.00 0.00 1.73
1882 6470 5.977489 TCGAGTGTCTATTCTCAAAAGGA 57.023 39.130 0.00 0.00 0.00 3.36
1884 6472 7.087639 ACTCTTCGAGTGTCTATTCTCAAAAG 58.912 38.462 0.00 0.00 41.76 2.27
1887 6475 7.867305 ATACTCTTCGAGTGTCTATTCTCAA 57.133 36.000 6.77 0.00 43.30 3.02
1888 6476 7.771361 AGAATACTCTTCGAGTGTCTATTCTCA 59.229 37.037 6.77 0.00 43.30 3.27
1889 6477 8.067784 CAGAATACTCTTCGAGTGTCTATTCTC 58.932 40.741 13.04 0.73 43.30 2.87
1983 6609 4.260784 GCGGCATACAATCGAAGAAAGAAT 60.261 41.667 0.00 0.00 43.58 2.40
1993 6619 1.846648 GACGAGCGGCATACAATCG 59.153 57.895 1.45 3.98 39.22 3.34
2094 6720 1.751351 TCAAGAGGCGGATGACTACTG 59.249 52.381 0.00 0.00 28.75 2.74
2100 6726 0.391130 CCGTTTCAAGAGGCGGATGA 60.391 55.000 8.13 0.00 46.33 2.92
2101 6727 1.369091 CCCGTTTCAAGAGGCGGATG 61.369 60.000 13.40 0.00 46.33 3.51
2102 6728 1.078426 CCCGTTTCAAGAGGCGGAT 60.078 57.895 13.40 0.00 46.33 4.18
2103 6729 1.550130 ATCCCGTTTCAAGAGGCGGA 61.550 55.000 13.40 0.00 46.33 5.54
2104 6730 1.078426 ATCCCGTTTCAAGAGGCGG 60.078 57.895 7.21 7.21 43.40 6.13
2105 6731 0.108138 AGATCCCGTTTCAAGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
2106 6732 2.093658 TGTAGATCCCGTTTCAAGAGGC 60.094 50.000 0.00 0.00 0.00 4.70
2107 6733 3.887621 TGTAGATCCCGTTTCAAGAGG 57.112 47.619 0.00 0.00 0.00 3.69
2108 6734 5.005779 CGATTTGTAGATCCCGTTTCAAGAG 59.994 44.000 0.00 0.00 0.00 2.85
2109 6735 4.868171 CGATTTGTAGATCCCGTTTCAAGA 59.132 41.667 0.00 0.00 0.00 3.02
2110 6736 4.494199 GCGATTTGTAGATCCCGTTTCAAG 60.494 45.833 0.00 0.00 0.00 3.02
2111 6737 3.372822 GCGATTTGTAGATCCCGTTTCAA 59.627 43.478 0.00 0.00 0.00 2.69
2112 6738 2.933906 GCGATTTGTAGATCCCGTTTCA 59.066 45.455 0.00 0.00 0.00 2.69
2113 6739 3.195661 AGCGATTTGTAGATCCCGTTTC 58.804 45.455 0.00 0.00 0.00 2.78
2114 6740 3.261981 AGCGATTTGTAGATCCCGTTT 57.738 42.857 0.00 0.00 0.00 3.60
2115 6741 2.981859 AGCGATTTGTAGATCCCGTT 57.018 45.000 0.00 0.00 0.00 4.44
2116 6742 4.117685 GTTTAGCGATTTGTAGATCCCGT 58.882 43.478 0.00 0.00 0.00 5.28
2117 6743 3.181774 CGTTTAGCGATTTGTAGATCCCG 59.818 47.826 0.00 0.00 44.77 5.14
2118 6744 4.365723 TCGTTTAGCGATTTGTAGATCCC 58.634 43.478 0.00 0.00 45.68 3.85
2201 6850 4.301072 TGATCCGGTTTCTTGAATCCTT 57.699 40.909 0.00 0.00 0.00 3.36
2279 6928 5.309638 TGGTGTATCGATCAAGGAAAACAA 58.690 37.500 0.00 0.00 0.00 2.83
2281 6930 4.201822 GCTGGTGTATCGATCAAGGAAAAC 60.202 45.833 0.00 0.00 0.00 2.43
2329 6978 6.580791 CGATTCCAACGACAATGTTGTATTTT 59.419 34.615 6.70 0.00 46.08 1.82
2382 7056 2.401351 GACGGAGGTTGAACTACACAC 58.599 52.381 0.00 0.00 0.00 3.82
2447 7351 6.418956 GCTTGATGCATGCATAATTTTCAAG 58.581 36.000 34.36 34.36 42.31 3.02
2592 7750 7.823745 AGACTTCACTGAAAATTTGGTGTAT 57.176 32.000 14.52 6.05 0.00 2.29
2660 7961 8.203937 TGTAATTTGTGGTTAGTTCGATATGG 57.796 34.615 0.00 0.00 0.00 2.74
2692 7998 7.938743 ACGCTCAAAATTTAATTCGAAATGAC 58.061 30.769 0.00 0.00 0.00 3.06
2716 8024 6.362283 CCAAATGTTGTTCGAAATGGAACTAC 59.638 38.462 0.00 13.05 45.11 2.73
2813 9340 2.094026 GGCGAATGAGATTTGGCCTTTT 60.094 45.455 3.32 0.00 41.87 2.27
2822 9349 2.026822 ACTTGAGTGGGCGAATGAGATT 60.027 45.455 0.00 0.00 0.00 2.40
2941 9559 3.296322 TTTTAGTTGGCGGAATTGCTG 57.704 42.857 0.00 0.00 34.52 4.41
2960 9578 3.067320 GGAGTTGCTGCAGAGTTCTTTTT 59.933 43.478 20.43 0.00 0.00 1.94
2963 9581 1.875576 CGGAGTTGCTGCAGAGTTCTT 60.876 52.381 20.43 0.00 0.00 2.52
2965 9583 2.157421 CGGAGTTGCTGCAGAGTTC 58.843 57.895 20.43 8.58 0.00 3.01
3025 9643 0.239347 AGTCGCAAAGCTGAATGCAC 59.761 50.000 16.66 13.44 45.94 4.57
3026 9644 0.953727 AAGTCGCAAAGCTGAATGCA 59.046 45.000 16.66 0.00 45.94 3.96
3027 9645 2.056094 AAAGTCGCAAAGCTGAATGC 57.944 45.000 8.85 8.85 43.29 3.56
3028 9646 2.154389 GCAAAAGTCGCAAAGCTGAATG 59.846 45.455 0.00 0.00 0.00 2.67
3029 9647 2.397549 GCAAAAGTCGCAAAGCTGAAT 58.602 42.857 0.00 0.00 0.00 2.57
3030 9648 1.535860 GGCAAAAGTCGCAAAGCTGAA 60.536 47.619 0.00 0.00 0.00 3.02
3031 9649 0.030638 GGCAAAAGTCGCAAAGCTGA 59.969 50.000 0.00 0.00 0.00 4.26
3033 9651 0.746659 AAGGCAAAAGTCGCAAAGCT 59.253 45.000 0.00 0.00 0.00 3.74
3035 9702 2.490328 TCAAGGCAAAAGTCGCAAAG 57.510 45.000 0.00 0.00 0.00 2.77
3040 9707 1.065401 TGTGCTTCAAGGCAAAAGTCG 59.935 47.619 0.00 0.00 44.18 4.18
3048 9715 4.439305 TTTATCATGTGTGCTTCAAGGC 57.561 40.909 0.00 0.00 0.00 4.35
3591 10497 0.612744 TGACGATCATGCCCTTGTCA 59.387 50.000 8.09 8.09 34.21 3.58
3593 10499 0.745845 GCTGACGATCATGCCCTTGT 60.746 55.000 0.00 0.00 0.00 3.16
3628 10540 3.120321 TCTTGACAATGTACGCACCTT 57.880 42.857 0.00 0.00 0.00 3.50
3660 10579 1.409064 AGCTTCCATTGAGCGACGATA 59.591 47.619 0.00 0.00 44.71 2.92
3661 10580 0.176680 AGCTTCCATTGAGCGACGAT 59.823 50.000 0.00 0.00 44.71 3.73
3665 10584 1.676916 CCTGAAGCTTCCATTGAGCGA 60.677 52.381 23.42 0.58 44.71 4.93
3672 10591 2.652590 GAGATTGCCTGAAGCTTCCAT 58.347 47.619 23.42 7.79 44.23 3.41
3794 10725 4.720902 CACAGGATGGGCACGCCA 62.721 66.667 10.83 0.00 43.62 5.69
3973 10910 2.252346 GCTGCATCCCTGAGCATCG 61.252 63.158 0.00 0.00 40.42 3.84
4142 11673 9.318041 CAGAAAAGCGTGCACAATATATAATAC 57.682 33.333 18.64 0.00 0.00 1.89
4147 11678 4.498009 GCCAGAAAAGCGTGCACAATATAT 60.498 41.667 18.64 0.00 0.00 0.86
4321 12086 9.226606 TGTTCTTCATAACCTACTTTGTATTGG 57.773 33.333 0.00 0.00 0.00 3.16
4396 12161 0.031010 ACACATCCTCCCCCTACTCC 60.031 60.000 0.00 0.00 0.00 3.85
4403 12168 2.436646 CGTGCACACATCCTCCCC 60.437 66.667 18.64 0.00 0.00 4.81
4434 12199 9.129209 CGCTTACATATATGCATATACGCTTAT 57.871 33.333 25.15 9.60 36.52 1.73
4438 12203 6.749216 ACGCTTACATATATGCATATACGC 57.251 37.500 25.15 19.68 32.28 4.42
4439 12204 8.055986 CCAAACGCTTACATATATGCATATACG 58.944 37.037 25.15 22.92 32.28 3.06
4501 12273 8.567948 TCTTGAAATGGTGTGTTTTAAGAGATC 58.432 33.333 2.85 0.00 36.71 2.75
4506 12278 9.919348 CAATTTCTTGAAATGGTGTGTTTTAAG 57.081 29.630 9.06 0.00 35.01 1.85
4551 12328 0.618458 TTGGGAGTGTACCATCCTGC 59.382 55.000 11.94 0.00 37.93 4.85
4577 12354 9.016623 GCGGTTATGGAGTTAAAATTTATTGTC 57.983 33.333 0.00 0.00 0.00 3.18
4578 12355 8.524487 TGCGGTTATGGAGTTAAAATTTATTGT 58.476 29.630 0.00 0.00 0.00 2.71
4579 12356 8.918961 TGCGGTTATGGAGTTAAAATTTATTG 57.081 30.769 0.00 0.00 0.00 1.90
4580 12357 9.744468 GATGCGGTTATGGAGTTAAAATTTATT 57.256 29.630 0.00 0.00 0.00 1.40
4581 12358 9.131791 AGATGCGGTTATGGAGTTAAAATTTAT 57.868 29.630 0.00 0.00 0.00 1.40
4582 12359 8.514330 AGATGCGGTTATGGAGTTAAAATTTA 57.486 30.769 0.00 0.00 0.00 1.40
4583 12360 7.404671 AGATGCGGTTATGGAGTTAAAATTT 57.595 32.000 0.00 0.00 0.00 1.82
4584 12361 7.012989 GGTAGATGCGGTTATGGAGTTAAAATT 59.987 37.037 0.00 0.00 0.00 1.82
4585 12362 6.485648 GGTAGATGCGGTTATGGAGTTAAAAT 59.514 38.462 0.00 0.00 0.00 1.82
4586 12363 5.818857 GGTAGATGCGGTTATGGAGTTAAAA 59.181 40.000 0.00 0.00 0.00 1.52
4587 12364 5.104859 TGGTAGATGCGGTTATGGAGTTAAA 60.105 40.000 0.00 0.00 0.00 1.52
4588 12365 4.406326 TGGTAGATGCGGTTATGGAGTTAA 59.594 41.667 0.00 0.00 0.00 2.01
4589 12366 3.962063 TGGTAGATGCGGTTATGGAGTTA 59.038 43.478 0.00 0.00 0.00 2.24
4590 12367 2.769663 TGGTAGATGCGGTTATGGAGTT 59.230 45.455 0.00 0.00 0.00 3.01
4591 12368 2.394632 TGGTAGATGCGGTTATGGAGT 58.605 47.619 0.00 0.00 0.00 3.85
4592 12369 3.069586 TCTTGGTAGATGCGGTTATGGAG 59.930 47.826 0.00 0.00 0.00 3.86
4593 12370 3.035363 TCTTGGTAGATGCGGTTATGGA 58.965 45.455 0.00 0.00 0.00 3.41
4594 12371 3.469008 TCTTGGTAGATGCGGTTATGG 57.531 47.619 0.00 0.00 0.00 2.74
4595 12372 6.402550 GCATAATCTTGGTAGATGCGGTTATG 60.403 42.308 0.00 0.00 40.26 1.90
4596 12373 5.643777 GCATAATCTTGGTAGATGCGGTTAT 59.356 40.000 0.00 0.00 40.26 1.89
4597 12374 4.994852 GCATAATCTTGGTAGATGCGGTTA 59.005 41.667 0.00 0.00 40.26 2.85
4598 12375 3.815401 GCATAATCTTGGTAGATGCGGTT 59.185 43.478 0.00 0.00 40.26 4.44
4599 12376 3.071602 AGCATAATCTTGGTAGATGCGGT 59.928 43.478 0.00 0.00 40.26 5.68
4600 12377 3.668447 AGCATAATCTTGGTAGATGCGG 58.332 45.455 0.00 0.00 40.26 5.69
4601 12378 7.261325 AGTATAGCATAATCTTGGTAGATGCG 58.739 38.462 0.00 0.00 40.26 4.73
4602 12379 8.474025 AGAGTATAGCATAATCTTGGTAGATGC 58.526 37.037 0.00 0.00 40.26 3.91
4618 12395 9.905713 AAAAAGGTTCATGAATAGAGTATAGCA 57.094 29.630 12.12 0.00 0.00 3.49
4658 12435 9.892130 GACCAGCACTATTTAATATATAGCCTT 57.108 33.333 0.00 0.00 0.00 4.35
4659 12436 8.487028 GGACCAGCACTATTTAATATATAGCCT 58.513 37.037 0.00 0.00 0.00 4.58
4660 12437 8.487028 AGGACCAGCACTATTTAATATATAGCC 58.513 37.037 0.00 0.00 0.00 3.93
4661 12438 9.892130 AAGGACCAGCACTATTTAATATATAGC 57.108 33.333 0.00 0.00 0.00 2.97
4670 12447 5.646360 GCTTGTAAAGGACCAGCACTATTTA 59.354 40.000 0.00 0.00 46.35 1.40
4672 12449 4.010349 GCTTGTAAAGGACCAGCACTATT 58.990 43.478 0.00 0.00 46.35 1.73
4675 12452 1.142870 TGCTTGTAAAGGACCAGCACT 59.857 47.619 0.00 0.00 46.87 4.40
4676 12453 1.604604 TGCTTGTAAAGGACCAGCAC 58.395 50.000 0.00 0.00 46.87 4.40
4683 12460 7.011499 TCTATAAAGGTGTGCTTGTAAAGGA 57.989 36.000 0.00 0.00 46.35 3.36
4687 12464 9.344772 TCTTTTTCTATAAAGGTGTGCTTGTAA 57.655 29.630 0.00 0.00 36.12 2.41
4688 12465 8.911918 TCTTTTTCTATAAAGGTGTGCTTGTA 57.088 30.769 0.00 0.00 36.12 2.41
4689 12466 7.817418 TCTTTTTCTATAAAGGTGTGCTTGT 57.183 32.000 0.00 0.00 36.12 3.16
4710 12487 9.533831 ACCTAAAGATGTGGATGTATTTTTCTT 57.466 29.630 0.00 0.00 0.00 2.52
4711 12488 9.533831 AACCTAAAGATGTGGATGTATTTTTCT 57.466 29.630 0.00 0.00 0.00 2.52
4712 12489 9.573133 CAACCTAAAGATGTGGATGTATTTTTC 57.427 33.333 0.00 0.00 0.00 2.29
4713 12490 9.088987 ACAACCTAAAGATGTGGATGTATTTTT 57.911 29.630 0.00 0.00 35.57 1.94
4715 12492 7.065803 CGACAACCTAAAGATGTGGATGTATTT 59.934 37.037 0.00 0.00 37.07 1.40
4717 12494 6.049149 CGACAACCTAAAGATGTGGATGTAT 58.951 40.000 0.00 0.00 37.07 2.29
4718 12495 5.186215 TCGACAACCTAAAGATGTGGATGTA 59.814 40.000 0.00 0.00 37.07 2.29
4719 12496 4.020573 TCGACAACCTAAAGATGTGGATGT 60.021 41.667 0.00 0.00 39.11 3.06
4720 12497 4.503910 TCGACAACCTAAAGATGTGGATG 58.496 43.478 0.00 0.00 28.72 3.51
4721 12498 4.819105 TCGACAACCTAAAGATGTGGAT 57.181 40.909 0.00 0.00 28.72 3.41
4722 12499 4.039973 ACTTCGACAACCTAAAGATGTGGA 59.960 41.667 0.00 0.00 31.30 4.02
4723 12500 4.315803 ACTTCGACAACCTAAAGATGTGG 58.684 43.478 0.00 0.00 0.00 4.17
4724 12501 5.230942 AGACTTCGACAACCTAAAGATGTG 58.769 41.667 0.00 0.00 0.00 3.21
4725 12502 5.470047 AGACTTCGACAACCTAAAGATGT 57.530 39.130 0.00 0.00 0.00 3.06
4726 12503 6.159988 AGAAGACTTCGACAACCTAAAGATG 58.840 40.000 9.53 0.00 34.02 2.90
4727 12504 6.347859 AGAAGACTTCGACAACCTAAAGAT 57.652 37.500 9.53 0.00 34.02 2.40
4729 12506 6.455045 GAAGAAGACTTCGACAACCTAAAG 57.545 41.667 9.53 0.00 42.14 1.85
4742 12519 3.117888 TGGTTGCAAGAGGAAGAAGACTT 60.118 43.478 0.00 0.00 39.24 3.01
4743 12520 2.439507 TGGTTGCAAGAGGAAGAAGACT 59.560 45.455 0.00 0.00 0.00 3.24
4745 12522 3.072915 TGATGGTTGCAAGAGGAAGAAGA 59.927 43.478 0.00 0.00 0.00 2.87
4746 12523 3.415212 TGATGGTTGCAAGAGGAAGAAG 58.585 45.455 0.00 0.00 0.00 2.85
4747 12524 3.507162 TGATGGTTGCAAGAGGAAGAA 57.493 42.857 0.00 0.00 0.00 2.52
4748 12525 3.415212 CTTGATGGTTGCAAGAGGAAGA 58.585 45.455 0.00 0.00 44.16 2.87
4749 12526 2.490903 CCTTGATGGTTGCAAGAGGAAG 59.509 50.000 0.00 0.00 44.16 3.46
4750 12527 2.517959 CCTTGATGGTTGCAAGAGGAA 58.482 47.619 0.00 0.00 44.16 3.36
4751 12528 1.272092 CCCTTGATGGTTGCAAGAGGA 60.272 52.381 0.00 0.00 44.16 3.71
4752 12529 1.180029 CCCTTGATGGTTGCAAGAGG 58.820 55.000 0.00 0.80 44.16 3.69
4753 12530 0.529378 GCCCTTGATGGTTGCAAGAG 59.471 55.000 0.00 0.00 44.16 2.85
4754 12531 1.243342 CGCCCTTGATGGTTGCAAGA 61.243 55.000 0.00 0.00 44.16 3.02
4755 12532 1.213537 CGCCCTTGATGGTTGCAAG 59.786 57.895 0.00 0.00 41.77 4.01
4756 12533 2.929903 GCGCCCTTGATGGTTGCAA 61.930 57.895 0.00 0.00 35.09 4.08
4757 12534 3.372730 GCGCCCTTGATGGTTGCA 61.373 61.111 0.00 0.00 35.09 4.08
4758 12535 4.481112 CGCGCCCTTGATGGTTGC 62.481 66.667 0.00 0.00 0.00 4.17
4759 12536 4.481112 GCGCGCCCTTGATGGTTG 62.481 66.667 23.24 0.00 0.00 3.77
4763 12540 4.170062 CACTGCGCGCCCTTGATG 62.170 66.667 30.77 13.41 0.00 3.07
4764 12541 4.393155 TCACTGCGCGCCCTTGAT 62.393 61.111 30.77 4.15 0.00 2.57
4772 12549 2.896801 AAGGTTTGCTCACTGCGCG 61.897 57.895 0.00 0.00 46.63 6.86
4773 12550 1.370900 CAAGGTTTGCTCACTGCGC 60.371 57.895 0.00 0.00 46.63 6.09
4775 12552 2.222027 ACTACAAGGTTTGCTCACTGC 58.778 47.619 0.00 0.00 43.25 4.40
4777 12554 2.618709 GCAACTACAAGGTTTGCTCACT 59.381 45.455 0.00 0.00 0.00 3.41
4778 12555 2.287608 GGCAACTACAAGGTTTGCTCAC 60.288 50.000 5.59 0.00 0.00 3.51
4779 12556 1.953686 GGCAACTACAAGGTTTGCTCA 59.046 47.619 5.59 0.00 0.00 4.26
4780 12557 2.706555 GGCAACTACAAGGTTTGCTC 57.293 50.000 5.59 0.00 0.00 4.26
4798 12575 1.045350 TCGAGATGAAGGCCCAGAGG 61.045 60.000 0.00 0.00 0.00 3.69
4799 12576 1.047002 ATCGAGATGAAGGCCCAGAG 58.953 55.000 0.00 0.00 0.00 3.35
4800 12577 2.158460 TCTATCGAGATGAAGGCCCAGA 60.158 50.000 0.00 0.00 0.00 3.86
4802 12579 2.242926 CTCTATCGAGATGAAGGCCCA 58.757 52.381 0.00 0.00 39.74 5.36
4808 12585 9.355215 GAAACAAAGTTACTCTATCGAGATGAA 57.645 33.333 0.47 0.00 39.74 2.57
4809 12586 8.520351 TGAAACAAAGTTACTCTATCGAGATGA 58.480 33.333 0.47 0.00 39.74 2.92
4810 12587 8.689251 TGAAACAAAGTTACTCTATCGAGATG 57.311 34.615 0.47 0.00 39.74 2.90
4811 12588 9.141400 GTTGAAACAAAGTTACTCTATCGAGAT 57.859 33.333 0.47 0.00 39.74 2.75
4812 12589 7.597743 GGTTGAAACAAAGTTACTCTATCGAGA 59.402 37.037 0.47 0.00 39.74 4.04
4813 12590 7.384115 TGGTTGAAACAAAGTTACTCTATCGAG 59.616 37.037 0.00 0.00 43.10 4.04
4816 12593 8.290325 CCTTGGTTGAAACAAAGTTACTCTATC 58.710 37.037 9.02 0.00 38.10 2.08
4817 12594 7.996644 TCCTTGGTTGAAACAAAGTTACTCTAT 59.003 33.333 9.02 0.00 38.10 1.98
4818 12595 7.340256 TCCTTGGTTGAAACAAAGTTACTCTA 58.660 34.615 9.02 0.00 38.10 2.43
4819 12596 6.184789 TCCTTGGTTGAAACAAAGTTACTCT 58.815 36.000 9.02 0.00 38.10 3.24
4820 12597 6.445357 TCCTTGGTTGAAACAAAGTTACTC 57.555 37.500 9.02 0.00 38.10 2.59
4821 12598 5.163550 GCTCCTTGGTTGAAACAAAGTTACT 60.164 40.000 9.02 0.00 38.10 2.24
4822 12599 5.041287 GCTCCTTGGTTGAAACAAAGTTAC 58.959 41.667 9.02 0.00 38.10 2.50
4824 12601 3.769300 AGCTCCTTGGTTGAAACAAAGTT 59.231 39.130 9.02 0.00 38.10 2.66
4825 12602 3.365472 AGCTCCTTGGTTGAAACAAAGT 58.635 40.909 9.02 0.00 38.10 2.66
4826 12603 4.391405 AAGCTCCTTGGTTGAAACAAAG 57.609 40.909 0.00 3.67 39.23 2.77
4846 12623 0.394938 TTCGGCCACTGCTTCTACAA 59.605 50.000 2.24 0.00 37.74 2.41
4847 12624 0.394938 TTTCGGCCACTGCTTCTACA 59.605 50.000 2.24 0.00 37.74 2.74
4848 12625 1.464997 CTTTTCGGCCACTGCTTCTAC 59.535 52.381 2.24 0.00 37.74 2.59
4849 12626 1.346395 TCTTTTCGGCCACTGCTTCTA 59.654 47.619 2.24 0.00 37.74 2.10
4851 12628 0.238553 GTCTTTTCGGCCACTGCTTC 59.761 55.000 2.24 0.00 37.74 3.86
4852 12629 1.507141 CGTCTTTTCGGCCACTGCTT 61.507 55.000 2.24 0.00 37.74 3.91
4853 12630 1.961277 CGTCTTTTCGGCCACTGCT 60.961 57.895 2.24 0.00 37.74 4.24
4854 12631 1.782028 AACGTCTTTTCGGCCACTGC 61.782 55.000 2.24 0.00 34.94 4.40
4855 12632 0.041312 CAACGTCTTTTCGGCCACTG 60.041 55.000 2.24 0.00 34.94 3.66
4856 12633 0.463116 ACAACGTCTTTTCGGCCACT 60.463 50.000 2.24 0.00 34.94 4.00
4857 12634 0.379316 AACAACGTCTTTTCGGCCAC 59.621 50.000 2.24 0.00 34.94 5.01
4858 12635 0.658897 GAACAACGTCTTTTCGGCCA 59.341 50.000 2.24 0.00 34.94 5.36
4859 12636 0.658897 TGAACAACGTCTTTTCGGCC 59.341 50.000 0.00 0.00 34.94 6.13
4861 12638 3.936902 TCTTGAACAACGTCTTTTCGG 57.063 42.857 0.00 0.00 34.94 4.30
4862 12639 5.112052 CGATTTCTTGAACAACGTCTTTTCG 59.888 40.000 0.00 0.00 0.00 3.46
4863 12640 5.395486 CCGATTTCTTGAACAACGTCTTTTC 59.605 40.000 0.00 0.00 0.00 2.29
4865 12642 4.334481 ACCGATTTCTTGAACAACGTCTTT 59.666 37.500 0.00 0.00 0.00 2.52
4866 12643 3.875134 ACCGATTTCTTGAACAACGTCTT 59.125 39.130 0.00 0.00 0.00 3.01
4867 12644 3.463944 ACCGATTTCTTGAACAACGTCT 58.536 40.909 0.00 0.00 0.00 4.18
4868 12645 3.872560 ACCGATTTCTTGAACAACGTC 57.127 42.857 0.00 0.00 0.00 4.34
4869 12646 4.812626 AGTTACCGATTTCTTGAACAACGT 59.187 37.500 0.00 0.00 0.00 3.99
4870 12647 5.137403 CAGTTACCGATTTCTTGAACAACG 58.863 41.667 0.00 0.00 0.00 4.10
4871 12648 5.008316 ACCAGTTACCGATTTCTTGAACAAC 59.992 40.000 0.00 0.00 0.00 3.32
4872 12649 5.127491 ACCAGTTACCGATTTCTTGAACAA 58.873 37.500 0.00 0.00 0.00 2.83
4873 12650 4.710324 ACCAGTTACCGATTTCTTGAACA 58.290 39.130 0.00 0.00 0.00 3.18
4874 12651 5.163884 GCTACCAGTTACCGATTTCTTGAAC 60.164 44.000 0.00 0.00 0.00 3.18
4875 12652 4.933400 GCTACCAGTTACCGATTTCTTGAA 59.067 41.667 0.00 0.00 0.00 2.69
4876 12653 4.222145 AGCTACCAGTTACCGATTTCTTGA 59.778 41.667 0.00 0.00 0.00 3.02
4878 12655 4.504858 CAGCTACCAGTTACCGATTTCTT 58.495 43.478 0.00 0.00 0.00 2.52
4879 12656 3.679083 GCAGCTACCAGTTACCGATTTCT 60.679 47.826 0.00 0.00 0.00 2.52
4880 12657 2.608090 GCAGCTACCAGTTACCGATTTC 59.392 50.000 0.00 0.00 0.00 2.17
4881 12658 2.236395 AGCAGCTACCAGTTACCGATTT 59.764 45.455 0.00 0.00 0.00 2.17
4882 12659 1.831736 AGCAGCTACCAGTTACCGATT 59.168 47.619 0.00 0.00 0.00 3.34
4883 12660 1.409427 GAGCAGCTACCAGTTACCGAT 59.591 52.381 0.00 0.00 0.00 4.18
4884 12661 0.815734 GAGCAGCTACCAGTTACCGA 59.184 55.000 0.00 0.00 0.00 4.69
4885 12662 0.525668 CGAGCAGCTACCAGTTACCG 60.526 60.000 0.00 0.00 0.00 4.02
4886 12663 0.179108 CCGAGCAGCTACCAGTTACC 60.179 60.000 0.00 0.00 0.00 2.85
4887 12664 0.806492 GCCGAGCAGCTACCAGTTAC 60.806 60.000 0.00 0.00 0.00 2.50
4888 12665 1.515954 GCCGAGCAGCTACCAGTTA 59.484 57.895 0.00 0.00 0.00 2.24
4890 12667 3.775654 GGCCGAGCAGCTACCAGT 61.776 66.667 0.00 0.00 0.00 4.00
4891 12668 3.465403 AGGCCGAGCAGCTACCAG 61.465 66.667 10.48 0.00 0.00 4.00
4892 12669 3.774528 CAGGCCGAGCAGCTACCA 61.775 66.667 10.48 0.00 0.00 3.25
4894 12671 3.672295 AAGCAGGCCGAGCAGCTAC 62.672 63.158 22.53 0.00 39.70 3.58
4896 12673 4.341783 AAAGCAGGCCGAGCAGCT 62.342 61.111 22.53 13.56 41.68 4.24
4898 12675 3.437795 CCAAAGCAGGCCGAGCAG 61.438 66.667 22.53 12.77 0.00 4.24
4899 12676 3.907260 CTCCAAAGCAGGCCGAGCA 62.907 63.158 22.53 3.48 0.00 4.26
4900 12677 3.130160 CTCCAAAGCAGGCCGAGC 61.130 66.667 14.50 14.50 0.00 5.03
4901 12678 2.037136 CACTCCAAAGCAGGCCGAG 61.037 63.158 0.00 0.00 0.00 4.63
4902 12679 2.032528 CACTCCAAAGCAGGCCGA 59.967 61.111 0.00 0.00 0.00 5.54
4903 12680 3.058160 CCACTCCAAAGCAGGCCG 61.058 66.667 0.00 0.00 0.00 6.13
4904 12681 3.376918 GCCACTCCAAAGCAGGCC 61.377 66.667 0.00 0.00 39.76 5.19
4905 12682 3.741476 CGCCACTCCAAAGCAGGC 61.741 66.667 0.00 0.00 41.34 4.85
4906 12683 0.962356 AATCGCCACTCCAAAGCAGG 60.962 55.000 0.00 0.00 0.00 4.85
4908 12685 2.192664 TTAATCGCCACTCCAAAGCA 57.807 45.000 0.00 0.00 0.00 3.91
4909 12686 2.286418 CGATTAATCGCCACTCCAAAGC 60.286 50.000 23.67 0.00 43.84 3.51
4910 12687 3.592381 CGATTAATCGCCACTCCAAAG 57.408 47.619 23.67 0.00 43.84 2.77
4922 12699 2.767505 AGGCCGATTCACCGATTAATC 58.232 47.619 5.30 5.30 0.00 1.75
4923 12700 2.930826 AGGCCGATTCACCGATTAAT 57.069 45.000 0.00 0.00 0.00 1.40
4924 12701 4.345859 AATAGGCCGATTCACCGATTAA 57.654 40.909 5.09 0.00 30.56 1.40
4925 12702 5.011329 AGTTAATAGGCCGATTCACCGATTA 59.989 40.000 14.98 0.00 33.86 1.75
4926 12703 2.930826 AATAGGCCGATTCACCGATT 57.069 45.000 5.09 0.00 0.00 3.34
4927 12704 3.323979 AGTTAATAGGCCGATTCACCGAT 59.676 43.478 14.98 0.00 0.00 4.18
4928 12705 2.696707 AGTTAATAGGCCGATTCACCGA 59.303 45.455 14.98 0.00 0.00 4.69
4931 12708 4.067972 TCCAGTTAATAGGCCGATTCAC 57.932 45.455 14.98 14.05 0.00 3.18
4932 12709 4.974645 ATCCAGTTAATAGGCCGATTCA 57.025 40.909 14.98 0.79 0.00 2.57
4933 12710 7.201530 CGATTAATCCAGTTAATAGGCCGATTC 60.202 40.741 14.98 1.72 41.82 2.52
4934 12711 6.594159 CGATTAATCCAGTTAATAGGCCGATT 59.406 38.462 15.84 15.84 41.82 3.34
4935 12712 6.106673 CGATTAATCCAGTTAATAGGCCGAT 58.893 40.000 9.87 0.00 41.82 4.18
4936 12713 5.475719 CGATTAATCCAGTTAATAGGCCGA 58.524 41.667 9.87 0.00 41.82 5.54
4937 12714 4.630069 CCGATTAATCCAGTTAATAGGCCG 59.370 45.833 9.87 0.00 43.75 6.13
4942 12719 6.040729 TGGTCGACCGATTAATCCAGTTAATA 59.959 38.462 28.70 2.18 41.82 0.98
4943 12720 5.163385 TGGTCGACCGATTAATCCAGTTAAT 60.163 40.000 28.70 0.00 43.86 1.40
4944 12721 4.160065 TGGTCGACCGATTAATCCAGTTAA 59.840 41.667 28.70 2.96 39.43 2.01
4945 12722 3.700539 TGGTCGACCGATTAATCCAGTTA 59.299 43.478 28.70 3.66 39.43 2.24
4947 12724 2.104967 TGGTCGACCGATTAATCCAGT 58.895 47.619 28.70 7.59 39.43 4.00
4950 12727 4.450080 GGTTAATGGTCGACCGATTAATCC 59.550 45.833 31.81 29.13 39.43 3.01
4959 12736 1.750778 TCTACCGGTTAATGGTCGACC 59.249 52.381 28.17 28.17 40.96 4.79
4960 12737 3.722728 ATCTACCGGTTAATGGTCGAC 57.277 47.619 15.04 7.13 40.96 4.20
4961 12738 5.850557 TTAATCTACCGGTTAATGGTCGA 57.149 39.130 15.04 6.17 40.96 4.20
4962 12739 7.330208 CCTATTTAATCTACCGGTTAATGGTCG 59.670 40.741 15.04 1.17 40.96 4.79
4966 12743 9.774413 AGTTCCTATTTAATCTACCGGTTAATG 57.226 33.333 15.04 0.75 0.00 1.90
4969 12746 9.822185 GAAAGTTCCTATTTAATCTACCGGTTA 57.178 33.333 15.04 0.93 0.00 2.85
4970 12747 7.772292 GGAAAGTTCCTATTTAATCTACCGGTT 59.228 37.037 15.04 0.00 44.11 4.44
4971 12748 7.278135 GGAAAGTTCCTATTTAATCTACCGGT 58.722 38.462 13.98 13.98 44.11 5.28
4972 12749 7.725818 GGAAAGTTCCTATTTAATCTACCGG 57.274 40.000 0.00 0.00 44.11 5.28
5019 12796 9.929180 GAGAGCATGAAAGTATGGTATAATACA 57.071 33.333 0.00 0.00 38.76 2.29
5020 12797 9.929180 TGAGAGCATGAAAGTATGGTATAATAC 57.071 33.333 0.00 0.00 38.76 1.89
5022 12799 9.664332 GATGAGAGCATGAAAGTATGGTATAAT 57.336 33.333 0.00 0.00 38.76 1.28
5023 12800 8.874156 AGATGAGAGCATGAAAGTATGGTATAA 58.126 33.333 0.00 0.00 38.76 0.98
5024 12801 8.427902 AGATGAGAGCATGAAAGTATGGTATA 57.572 34.615 0.00 0.00 38.76 1.47
5025 12802 7.313740 AGATGAGAGCATGAAAGTATGGTAT 57.686 36.000 0.00 0.00 38.76 2.73
5026 12803 6.737720 AGATGAGAGCATGAAAGTATGGTA 57.262 37.500 0.00 0.00 38.76 3.25
5029 12806 9.702494 TTACATAGATGAGAGCATGAAAGTATG 57.298 33.333 0.00 0.00 34.11 2.39
5036 12813 9.479549 TGGTATATTACATAGATGAGAGCATGA 57.520 33.333 0.00 0.00 34.11 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.