Multiple sequence alignment - TraesCS5D01G403400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G403400 chr5D 100.000 3565 0 0 1 3565 469227482 469231046 0.000000e+00 6584
1 TraesCS5D01G403400 chr5D 91.257 549 48 0 1570 2118 469245265 469245813 0.000000e+00 749
2 TraesCS5D01G403400 chr5D 92.500 520 36 3 969 1487 469244693 469245210 0.000000e+00 741
3 TraesCS5D01G403400 chr5D 87.531 401 43 6 1722 2117 469242848 469243246 1.170000e-124 457
4 TraesCS5D01G403400 chr5D 82.095 525 82 10 1607 2123 469236125 469236645 4.230000e-119 438
5 TraesCS5D01G403400 chr5D 85.276 326 40 7 2214 2535 469245807 469246128 2.650000e-86 329
6 TraesCS5D01G403400 chr5D 81.008 258 44 3 2214 2470 469272256 469272509 2.170000e-47 200
7 TraesCS5D01G403400 chr5D 93.750 112 6 1 2666 2777 307096397 307096287 2.200000e-37 167
8 TraesCS5D01G403400 chr5D 93.636 110 7 0 2668 2777 141428045 141427936 7.920000e-37 165
9 TraesCS5D01G403400 chr5D 92.473 93 7 0 1 93 104407291 104407199 2.230000e-27 134
10 TraesCS5D01G403400 chr5B 92.396 1920 91 33 739 2649 576160502 576162375 0.000000e+00 2686
11 TraesCS5D01G403400 chr5B 89.042 1159 105 14 976 2118 576225352 576226504 0.000000e+00 1417
12 TraesCS5D01G403400 chr5B 95.591 567 24 1 1553 2118 576054957 576055523 0.000000e+00 907
13 TraesCS5D01G403400 chr5B 91.318 622 27 9 871 1487 576053712 576054311 0.000000e+00 824
14 TraesCS5D01G403400 chr5B 85.660 788 70 23 2799 3565 576057225 576057990 0.000000e+00 789
15 TraesCS5D01G403400 chr5B 93.478 414 22 2 2214 2627 576055517 576055925 8.460000e-171 610
16 TraesCS5D01G403400 chr5B 86.897 435 38 11 2951 3381 576056159 576056578 1.500000e-128 470
17 TraesCS5D01G403400 chr5B 81.086 534 87 12 1599 2123 576214256 576214784 7.120000e-112 414
18 TraesCS5D01G403400 chr5B 86.420 324 38 5 2214 2534 576226498 576226818 2.040000e-92 350
19 TraesCS5D01G403400 chr5B 75.884 481 102 11 1013 1489 576242892 576243362 2.140000e-57 233
20 TraesCS5D01G403400 chr5B 81.008 258 44 3 2214 2470 576245717 576245970 2.170000e-47 200
21 TraesCS5D01G403400 chr5B 93.651 126 7 1 3426 3551 576057104 576057228 1.690000e-43 187
22 TraesCS5D01G403400 chr5B 93.548 124 7 1 3426 3549 576166668 576166790 2.190000e-42 183
23 TraesCS5D01G403400 chr5B 87.619 105 10 2 2798 2902 576055926 576056027 6.250000e-23 119
24 TraesCS5D01G403400 chr5A 91.281 1835 100 31 825 2638 589311408 589313203 0.000000e+00 2447
25 TraesCS5D01G403400 chr5A 88.821 1145 101 19 976 2118 589328280 589329399 0.000000e+00 1380
26 TraesCS5D01G403400 chr5A 85.229 589 46 13 2800 3381 589313204 589313758 5.170000e-158 568
27 TraesCS5D01G403400 chr5A 88.136 354 38 4 2214 2565 589329393 589329744 5.500000e-113 418
28 TraesCS5D01G403400 chr5A 89.796 294 17 7 199 483 589310529 589310818 7.270000e-97 364
29 TraesCS5D01G403400 chr5A 76.543 486 101 10 1012 1489 589315627 589316107 1.640000e-63 254
30 TraesCS5D01G403400 chr5A 76.200 500 101 12 1013 1509 589366386 589366870 7.640000e-62 248
31 TraesCS5D01G403400 chr5A 79.692 325 57 7 2214 2535 589338020 589338338 3.580000e-55 226
32 TraesCS5D01G403400 chr5A 96.471 85 3 0 3378 3462 589313731 589313815 1.330000e-29 141
33 TraesCS5D01G403400 chr5A 95.652 69 2 1 3498 3565 589313818 589313886 3.760000e-20 110
34 TraesCS5D01G403400 chr7D 94.495 109 6 0 2669 2777 459742873 459742981 6.120000e-38 169
35 TraesCS5D01G403400 chr6B 94.495 109 6 0 2669 2777 196149478 196149586 6.120000e-38 169
36 TraesCS5D01G403400 chr3D 94.495 109 6 0 2669 2777 231411677 231411569 6.120000e-38 169
37 TraesCS5D01G403400 chr3D 94.495 109 6 0 2669 2777 481916466 481916358 6.120000e-38 169
38 TraesCS5D01G403400 chr3D 95.699 93 4 0 1 93 104567414 104567322 2.220000e-32 150
39 TraesCS5D01G403400 chr3D 92.473 93 7 0 1 93 267294632 267294540 2.230000e-27 134
40 TraesCS5D01G403400 chr3D 93.333 90 6 0 1 90 460424207 460424296 2.230000e-27 134
41 TraesCS5D01G403400 chr6A 92.920 113 8 0 2665 2777 465348854 465348966 7.920000e-37 165
42 TraesCS5D01G403400 chr4D 93.636 110 7 0 2668 2777 78773668 78773777 7.920000e-37 165
43 TraesCS5D01G403400 chr4D 93.333 90 6 0 1 90 484374730 484374819 2.230000e-27 134
44 TraesCS5D01G403400 chr4A 91.525 118 9 1 2660 2777 698876791 698876675 1.020000e-35 161
45 TraesCS5D01G403400 chr7A 94.624 93 5 0 1 93 134009308 134009216 1.030000e-30 145
46 TraesCS5D01G403400 chr2B 94.444 90 5 0 1 90 74413465 74413554 4.800000e-29 139
47 TraesCS5D01G403400 chr1D 94.444 90 5 0 1 90 465396321 465396410 4.800000e-29 139
48 TraesCS5D01G403400 chr1B 94.444 90 5 0 1 90 642150699 642150788 4.800000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G403400 chr5D 469227482 469231046 3564 False 6584.000000 6584 100.0000 1 3565 1 chr5D.!!$F1 3564
1 TraesCS5D01G403400 chr5D 469242848 469246128 3280 False 569.000000 749 89.1410 969 2535 4 chr5D.!!$F4 1566
2 TraesCS5D01G403400 chr5D 469236125 469236645 520 False 438.000000 438 82.0950 1607 2123 1 chr5D.!!$F2 516
3 TraesCS5D01G403400 chr5B 576160502 576162375 1873 False 2686.000000 2686 92.3960 739 2649 1 chr5B.!!$F1 1910
4 TraesCS5D01G403400 chr5B 576225352 576226818 1466 False 883.500000 1417 87.7310 976 2534 2 chr5B.!!$F5 1558
5 TraesCS5D01G403400 chr5B 576053712 576057990 4278 False 558.000000 907 90.6020 871 3565 7 chr5B.!!$F4 2694
6 TraesCS5D01G403400 chr5B 576214256 576214784 528 False 414.000000 414 81.0860 1599 2123 1 chr5B.!!$F3 524
7 TraesCS5D01G403400 chr5B 576242892 576245970 3078 False 216.500000 233 78.4460 1013 2470 2 chr5B.!!$F6 1457
8 TraesCS5D01G403400 chr5A 589328280 589329744 1464 False 899.000000 1380 88.4785 976 2565 2 chr5A.!!$F4 1589
9 TraesCS5D01G403400 chr5A 589310529 589316107 5578 False 647.333333 2447 89.1620 199 3565 6 chr5A.!!$F3 3366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.030773 CGGGCGATCTCGAATTCTGA 59.969 55.0 3.33 2.33 43.02 3.27 F
198 199 0.031043 CGTACGAATATCACCGGCCA 59.969 55.0 10.44 0.00 0.00 5.36 F
2172 4870 0.041047 CACTTGACGTGTCGACCGTA 60.041 55.0 25.04 14.01 38.92 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 2353 2.165319 AAGTACCCTTGTCGTTGAGC 57.835 50.0 0.00 0.0 0.00 4.26 R
2180 4878 0.034337 ATTCACACGTTACGGGCACT 59.966 50.0 7.01 0.0 31.12 4.40 R
3062 7106 0.100682 TAGCTAACTCCTCAAGCGCG 59.899 55.0 0.00 0.0 41.19 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.813908 GGTCGCGACGAAGGCATT 60.814 61.111 30.99 0.00 37.72 3.56
28 29 2.395690 GTCGCGACGAAGGCATTG 59.604 61.111 25.19 0.00 37.72 2.82
39 40 3.064324 GGCATTGCCGTGCTCCTT 61.064 61.111 12.82 0.00 44.45 3.36
50 51 4.481195 GCTCCTTGCACTTGGTGA 57.519 55.556 1.57 0.00 42.31 4.02
51 52 1.952263 GCTCCTTGCACTTGGTGAC 59.048 57.895 1.57 0.00 42.31 3.67
52 53 1.518903 GCTCCTTGCACTTGGTGACC 61.519 60.000 0.00 0.00 42.31 4.02
53 54 0.179020 CTCCTTGCACTTGGTGACCA 60.179 55.000 0.00 0.00 35.23 4.02
54 55 0.465460 TCCTTGCACTTGGTGACCAC 60.465 55.000 2.46 0.00 35.23 4.16
64 65 2.430367 GTGACCACCTCCACACCC 59.570 66.667 0.00 0.00 33.72 4.61
65 66 2.147387 GTGACCACCTCCACACCCT 61.147 63.158 0.00 0.00 33.72 4.34
67 68 2.923035 ACCACCTCCACACCCTCG 60.923 66.667 0.00 0.00 0.00 4.63
68 69 2.923035 CCACCTCCACACCCTCGT 60.923 66.667 0.00 0.00 0.00 4.18
69 70 2.657237 CACCTCCACACCCTCGTC 59.343 66.667 0.00 0.00 0.00 4.20
71 72 2.989824 CCTCCACACCCTCGTCGT 60.990 66.667 0.00 0.00 0.00 4.34
72 73 2.571216 CCTCCACACCCTCGTCGTT 61.571 63.158 0.00 0.00 0.00 3.85
73 74 1.372997 CTCCACACCCTCGTCGTTG 60.373 63.158 0.00 0.00 0.00 4.10
74 75 1.802337 CTCCACACCCTCGTCGTTGA 61.802 60.000 0.00 0.00 0.00 3.18
76 77 0.944311 CCACACCCTCGTCGTTGAAG 60.944 60.000 0.00 0.00 0.00 3.02
77 78 0.944311 CACACCCTCGTCGTTGAAGG 60.944 60.000 0.00 0.00 0.00 3.46
78 79 2.027625 CACCCTCGTCGTTGAAGGC 61.028 63.158 0.00 0.00 0.00 4.35
79 80 2.809601 CCCTCGTCGTTGAAGGCG 60.810 66.667 0.00 0.00 0.00 5.52
80 81 2.257371 CCTCGTCGTTGAAGGCGA 59.743 61.111 0.00 0.00 35.89 5.54
81 82 1.153823 CCTCGTCGTTGAAGGCGAT 60.154 57.895 0.00 0.00 40.59 4.58
82 83 1.140407 CCTCGTCGTTGAAGGCGATC 61.140 60.000 0.00 0.00 40.59 3.69
83 84 0.456142 CTCGTCGTTGAAGGCGATCA 60.456 55.000 0.00 0.00 40.59 2.92
84 85 0.038983 TCGTCGTTGAAGGCGATCAA 60.039 50.000 4.91 4.91 40.59 2.57
91 92 1.428448 TGAAGGCGATCAACTTCACG 58.572 50.000 19.53 0.00 45.76 4.35
92 93 0.721718 GAAGGCGATCAACTTCACGG 59.278 55.000 17.09 0.00 41.99 4.94
94 95 2.750888 GGCGATCAACTTCACGGGC 61.751 63.158 0.00 0.00 0.00 6.13
95 96 3.081133 CGATCAACTTCACGGGCG 58.919 61.111 0.00 0.00 0.00 6.13
96 97 1.445410 CGATCAACTTCACGGGCGA 60.445 57.895 0.00 0.00 0.00 5.54
97 98 0.806102 CGATCAACTTCACGGGCGAT 60.806 55.000 0.00 0.00 0.00 4.58
99 100 0.537188 ATCAACTTCACGGGCGATCT 59.463 50.000 0.00 0.00 0.00 2.75
100 101 0.108804 TCAACTTCACGGGCGATCTC 60.109 55.000 0.00 0.00 0.00 2.75
101 102 1.153823 AACTTCACGGGCGATCTCG 60.154 57.895 0.00 0.00 43.27 4.04
102 103 1.592400 AACTTCACGGGCGATCTCGA 61.592 55.000 3.33 0.00 43.02 4.04
103 104 1.138883 CTTCACGGGCGATCTCGAA 59.861 57.895 3.33 0.00 43.02 3.71
104 105 0.249073 CTTCACGGGCGATCTCGAAT 60.249 55.000 3.33 0.00 43.02 3.34
105 106 0.174845 TTCACGGGCGATCTCGAATT 59.825 50.000 3.33 0.00 43.02 2.17
106 107 0.248907 TCACGGGCGATCTCGAATTC 60.249 55.000 3.33 0.00 43.02 2.17
107 108 0.249073 CACGGGCGATCTCGAATTCT 60.249 55.000 3.33 0.00 43.02 2.40
109 110 0.030773 CGGGCGATCTCGAATTCTGA 59.969 55.000 3.33 2.33 43.02 3.27
110 111 1.536072 CGGGCGATCTCGAATTCTGAA 60.536 52.381 3.33 0.00 43.02 3.02
111 112 2.131183 GGGCGATCTCGAATTCTGAAG 58.869 52.381 3.33 0.00 43.02 3.02
112 113 2.223829 GGGCGATCTCGAATTCTGAAGA 60.224 50.000 3.33 4.41 43.02 2.87
113 114 3.553922 GGGCGATCTCGAATTCTGAAGAT 60.554 47.826 12.16 12.16 43.02 2.40
114 115 3.672867 GGCGATCTCGAATTCTGAAGATC 59.327 47.826 21.08 21.08 43.02 2.75
115 116 3.672867 GCGATCTCGAATTCTGAAGATCC 59.327 47.826 23.03 16.79 43.02 3.36
116 117 3.911365 CGATCTCGAATTCTGAAGATCCG 59.089 47.826 23.03 17.86 43.02 4.18
117 118 4.555708 CGATCTCGAATTCTGAAGATCCGT 60.556 45.833 23.03 5.46 43.02 4.69
118 119 4.720649 TCTCGAATTCTGAAGATCCGTT 57.279 40.909 3.52 0.00 0.00 4.44
119 120 5.073311 TCTCGAATTCTGAAGATCCGTTT 57.927 39.130 3.52 0.00 0.00 3.60
120 121 6.203808 TCTCGAATTCTGAAGATCCGTTTA 57.796 37.500 3.52 0.00 0.00 2.01
121 122 6.806751 TCTCGAATTCTGAAGATCCGTTTAT 58.193 36.000 3.52 0.00 0.00 1.40
122 123 6.697455 TCTCGAATTCTGAAGATCCGTTTATG 59.303 38.462 3.52 0.00 0.00 1.90
124 125 5.559035 CGAATTCTGAAGATCCGTTTATGCC 60.559 44.000 3.52 0.00 0.00 4.40
126 127 2.167693 TCTGAAGATCCGTTTATGCCGT 59.832 45.455 0.00 0.00 0.00 5.68
127 128 2.276201 TGAAGATCCGTTTATGCCGTG 58.724 47.619 0.00 0.00 0.00 4.94
128 129 2.277084 GAAGATCCGTTTATGCCGTGT 58.723 47.619 0.00 0.00 0.00 4.49
129 130 2.396590 AGATCCGTTTATGCCGTGTT 57.603 45.000 0.00 0.00 0.00 3.32
130 131 2.006888 AGATCCGTTTATGCCGTGTTG 58.993 47.619 0.00 0.00 0.00 3.33
131 132 0.450184 ATCCGTTTATGCCGTGTTGC 59.550 50.000 0.00 0.00 0.00 4.17
132 133 0.885150 TCCGTTTATGCCGTGTTGCA 60.885 50.000 0.00 0.00 46.94 4.08
138 139 4.345962 TGCCGTGTTGCATGCTGC 62.346 61.111 20.33 11.92 45.29 5.25
140 141 4.424566 CCGTGTTGCATGCTGCCC 62.425 66.667 20.33 4.46 44.23 5.36
141 142 3.672447 CGTGTTGCATGCTGCCCA 61.672 61.111 20.33 7.13 44.23 5.36
155 156 3.125607 CCCAGCCGAGCACGTATA 58.874 61.111 2.18 0.00 37.88 1.47
156 157 1.666011 CCCAGCCGAGCACGTATAT 59.334 57.895 2.18 0.00 37.88 0.86
157 158 0.885879 CCCAGCCGAGCACGTATATA 59.114 55.000 2.18 0.00 37.88 0.86
158 159 1.135373 CCCAGCCGAGCACGTATATAG 60.135 57.143 2.18 0.00 37.88 1.31
159 160 1.540267 CCAGCCGAGCACGTATATAGT 59.460 52.381 2.18 0.00 37.88 2.12
160 161 2.745821 CCAGCCGAGCACGTATATAGTA 59.254 50.000 2.18 0.00 37.88 1.82
161 162 3.377485 CCAGCCGAGCACGTATATAGTAT 59.623 47.826 2.18 0.00 37.88 2.12
162 163 4.142447 CCAGCCGAGCACGTATATAGTATT 60.142 45.833 2.18 0.00 37.88 1.89
163 164 5.399858 CAGCCGAGCACGTATATAGTATTT 58.600 41.667 2.18 0.00 37.88 1.40
165 166 6.365247 CAGCCGAGCACGTATATAGTATTTTT 59.635 38.462 2.18 0.00 37.88 1.94
190 191 9.904647 TTTACAGTAAAATTGCGTACGAATATC 57.095 29.630 21.65 0.45 0.00 1.63
191 192 7.528481 ACAGTAAAATTGCGTACGAATATCA 57.472 32.000 21.65 3.63 0.00 2.15
192 193 7.396419 ACAGTAAAATTGCGTACGAATATCAC 58.604 34.615 21.65 12.57 0.00 3.06
193 194 6.844279 CAGTAAAATTGCGTACGAATATCACC 59.156 38.462 21.65 0.00 0.00 4.02
194 195 4.446857 AAATTGCGTACGAATATCACCG 57.553 40.909 21.65 0.00 0.00 4.94
195 196 1.842720 TTGCGTACGAATATCACCGG 58.157 50.000 21.65 0.00 0.00 5.28
196 197 0.595567 TGCGTACGAATATCACCGGC 60.596 55.000 21.65 0.00 0.00 6.13
197 198 1.280206 GCGTACGAATATCACCGGCC 61.280 60.000 21.65 0.00 0.00 6.13
198 199 0.031043 CGTACGAATATCACCGGCCA 59.969 55.000 10.44 0.00 0.00 5.36
199 200 1.494824 GTACGAATATCACCGGCCAC 58.505 55.000 0.00 0.00 0.00 5.01
200 201 1.068127 GTACGAATATCACCGGCCACT 59.932 52.381 0.00 0.00 0.00 4.00
202 203 0.880278 CGAATATCACCGGCCACTGG 60.880 60.000 0.00 0.00 0.00 4.00
203 204 0.535102 GAATATCACCGGCCACTGGG 60.535 60.000 0.00 0.00 37.18 4.45
204 205 1.994885 AATATCACCGGCCACTGGGG 61.995 60.000 0.00 0.00 40.85 4.96
213 214 3.770040 CCACTGGGGCATCGACGA 61.770 66.667 0.00 0.00 0.00 4.20
214 215 2.509336 CACTGGGGCATCGACGAC 60.509 66.667 0.00 0.00 0.00 4.34
215 216 2.680352 ACTGGGGCATCGACGACT 60.680 61.111 0.00 0.00 0.00 4.18
224 225 2.334838 GCATCGACGACTTTTACCACT 58.665 47.619 0.00 0.00 0.00 4.00
227 228 4.565564 GCATCGACGACTTTTACCACTTAT 59.434 41.667 0.00 0.00 0.00 1.73
274 278 4.938074 TGGGGGTTCCACGACGGA 62.938 66.667 0.00 0.00 44.40 4.69
298 302 2.215196 GACACTAAAGAAACCACGGCA 58.785 47.619 0.00 0.00 0.00 5.69
337 341 4.847367 GCCAGCCATTCCAGGGGG 62.847 72.222 0.00 0.00 0.00 5.40
340 344 1.067762 CCAGCCATTCCAGGGGGATA 61.068 60.000 0.00 0.00 44.48 2.59
415 424 9.604626 CTGCTGTTTAAGAATTTACTCTTCAAG 57.395 33.333 0.00 0.00 36.95 3.02
439 448 2.165301 GTTCGTTCGCCAGCGCTAT 61.165 57.895 10.99 0.00 39.59 2.97
445 454 1.136611 GTTCGCCAGCGCTATAATTCG 60.137 52.381 10.99 7.68 39.59 3.34
449 458 1.872237 GCCAGCGCTATAATTCGACCA 60.872 52.381 10.99 0.00 0.00 4.02
472 481 3.615110 GCCAGATCAATCGTCCGATATGT 60.615 47.826 2.16 0.00 33.97 2.29
477 486 6.470556 CAGATCAATCGTCCGATATGTATGAC 59.529 42.308 2.16 0.00 33.97 3.06
520 709 5.452302 CCGAGCAATTAAAATAGCAAACTCG 59.548 40.000 0.00 0.00 42.02 4.18
522 711 6.192863 CGAGCAATTAAAATAGCAAACTCGTC 59.807 38.462 0.00 0.00 38.67 4.20
523 712 7.145932 AGCAATTAAAATAGCAAACTCGTCT 57.854 32.000 0.00 0.00 0.00 4.18
526 715 7.217070 GCAATTAAAATAGCAAACTCGTCTCTG 59.783 37.037 0.00 0.00 0.00 3.35
530 719 1.372997 GCAAACTCGTCTCTGCCGA 60.373 57.895 0.00 0.00 0.00 5.54
533 722 0.387929 AAACTCGTCTCTGCCGACAA 59.612 50.000 0.00 0.00 33.54 3.18
542 731 1.998315 CTCTGCCGACAACTTCATCAG 59.002 52.381 0.00 0.00 0.00 2.90
544 733 1.291184 TGCCGACAACTTCATCAGCG 61.291 55.000 0.00 0.00 0.00 5.18
547 736 1.291184 CGACAACTTCATCAGCGGCA 61.291 55.000 1.45 0.00 0.00 5.69
549 738 1.136147 CAACTTCATCAGCGGCAGC 59.864 57.895 0.00 0.00 45.58 5.25
562 751 0.246086 CGGCAGCTCTGACTCTTCTT 59.754 55.000 0.29 0.00 36.16 2.52
571 760 7.027161 CAGCTCTGACTCTTCTTTCTTAGTAC 58.973 42.308 0.00 0.00 0.00 2.73
573 762 8.104566 AGCTCTGACTCTTCTTTCTTAGTACTA 58.895 37.037 0.00 0.00 0.00 1.82
574 763 8.395633 GCTCTGACTCTTCTTTCTTAGTACTAG 58.604 40.741 2.23 0.00 0.00 2.57
575 764 8.271312 TCTGACTCTTCTTTCTTAGTACTAGC 57.729 38.462 2.23 0.00 0.00 3.42
595 784 0.796927 GCTAGAAGGCGACAAACACC 59.203 55.000 0.00 0.00 0.00 4.16
618 811 2.738846 CCTGCATCCGATAAGCATACAC 59.261 50.000 0.00 0.00 37.68 2.90
632 825 8.675705 ATAAGCATACACATTATTGCACTGTA 57.324 30.769 0.00 0.00 37.56 2.74
642 835 2.455674 TTGCACTGTACAGAAGCGAT 57.544 45.000 29.30 2.44 36.39 4.58
648 841 5.163864 TGCACTGTACAGAAGCGATTAATTG 60.164 40.000 29.30 12.81 36.39 2.32
649 842 5.163854 GCACTGTACAGAAGCGATTAATTGT 60.164 40.000 29.30 0.00 0.00 2.71
650 843 6.035650 GCACTGTACAGAAGCGATTAATTGTA 59.964 38.462 29.30 0.00 0.00 2.41
651 844 7.391786 CACTGTACAGAAGCGATTAATTGTAC 58.608 38.462 29.30 19.82 40.56 2.90
652 845 7.275779 CACTGTACAGAAGCGATTAATTGTACT 59.724 37.037 29.30 11.17 40.70 2.73
653 846 7.817962 ACTGTACAGAAGCGATTAATTGTACTT 59.182 33.333 29.30 14.56 40.70 2.24
654 847 8.542497 TGTACAGAAGCGATTAATTGTACTTT 57.458 30.769 23.67 7.87 40.70 2.66
655 848 8.653338 TGTACAGAAGCGATTAATTGTACTTTC 58.347 33.333 23.67 11.97 40.70 2.62
660 853 9.167311 AGAAGCGATTAATTGTACTTTCTTCAT 57.833 29.630 15.28 4.45 31.42 2.57
663 856 8.116753 AGCGATTAATTGTACTTTCTTCATTCG 58.883 33.333 4.60 0.00 0.00 3.34
664 857 8.114290 GCGATTAATTGTACTTTCTTCATTCGA 58.886 33.333 4.60 0.00 0.00 3.71
665 858 9.967245 CGATTAATTGTACTTTCTTCATTCGAA 57.033 29.630 0.00 0.00 0.00 3.71
670 863 7.908193 TTGTACTTTCTTCATTCGAAAAAGC 57.092 32.000 15.73 5.15 31.64 3.51
671 864 7.259290 TGTACTTTCTTCATTCGAAAAAGCT 57.741 32.000 15.73 8.44 31.64 3.74
673 866 7.643764 TGTACTTTCTTCATTCGAAAAAGCTTG 59.356 33.333 15.73 3.96 31.64 4.01
674 867 6.564328 ACTTTCTTCATTCGAAAAAGCTTGT 58.436 32.000 15.73 0.00 31.64 3.16
675 868 6.693113 ACTTTCTTCATTCGAAAAAGCTTGTC 59.307 34.615 15.73 0.00 31.64 3.18
676 869 5.108385 TCTTCATTCGAAAAAGCTTGTCC 57.892 39.130 15.30 0.00 0.00 4.02
677 870 3.915437 TCATTCGAAAAAGCTTGTCCC 57.085 42.857 0.00 0.00 0.00 4.46
678 871 3.218453 TCATTCGAAAAAGCTTGTCCCA 58.782 40.909 0.00 0.00 0.00 4.37
680 873 4.098654 TCATTCGAAAAAGCTTGTCCCAAA 59.901 37.500 0.00 0.00 0.00 3.28
681 874 3.708563 TCGAAAAAGCTTGTCCCAAAG 57.291 42.857 0.00 0.00 0.00 2.77
684 877 3.551485 CGAAAAAGCTTGTCCCAAAGTTG 59.449 43.478 0.00 0.00 0.00 3.16
685 878 4.503910 GAAAAAGCTTGTCCCAAAGTTGT 58.496 39.130 0.00 0.00 0.00 3.32
687 880 4.551702 AAAGCTTGTCCCAAAGTTGTTT 57.448 36.364 0.00 0.00 0.00 2.83
688 881 4.551702 AAGCTTGTCCCAAAGTTGTTTT 57.448 36.364 0.00 0.00 0.00 2.43
690 883 5.669164 AGCTTGTCCCAAAGTTGTTTTTA 57.331 34.783 0.00 0.00 0.00 1.52
691 884 6.043854 AGCTTGTCCCAAAGTTGTTTTTAA 57.956 33.333 0.00 0.00 0.00 1.52
692 885 6.468543 AGCTTGTCCCAAAGTTGTTTTTAAA 58.531 32.000 0.00 0.00 0.00 1.52
693 886 7.109501 AGCTTGTCCCAAAGTTGTTTTTAAAT 58.890 30.769 0.00 0.00 0.00 1.40
694 887 8.261522 AGCTTGTCCCAAAGTTGTTTTTAAATA 58.738 29.630 0.00 0.00 0.00 1.40
695 888 8.884726 GCTTGTCCCAAAGTTGTTTTTAAATAA 58.115 29.630 0.00 0.00 0.00 1.40
754 947 4.461431 TCGGACAGTAGCTTTGAATGACTA 59.539 41.667 0.00 0.00 0.00 2.59
795 989 1.337728 CGCAGACAACATACCTCACCA 60.338 52.381 0.00 0.00 0.00 4.17
816 1010 1.534175 CCAGCTCACGACCGAGATAAC 60.534 57.143 0.00 0.00 34.79 1.89
817 1011 1.402259 CAGCTCACGACCGAGATAACT 59.598 52.381 0.00 0.00 34.79 2.24
818 1012 2.612672 CAGCTCACGACCGAGATAACTA 59.387 50.000 0.00 0.00 34.79 2.24
819 1013 3.251245 CAGCTCACGACCGAGATAACTAT 59.749 47.826 0.00 0.00 34.79 2.12
822 1016 5.530171 AGCTCACGACCGAGATAACTATTTA 59.470 40.000 0.00 0.00 34.79 1.40
863 1220 1.227853 CCCCCACGATCGGAATTCC 60.228 63.158 20.98 15.01 0.00 3.01
902 1263 3.197790 CGGTGATCGCCAGCTTGG 61.198 66.667 24.60 3.71 40.94 3.61
1374 2257 2.282958 TGGTCCTTCGAGGTCGCT 60.283 61.111 0.00 0.00 36.53 4.93
1470 2353 1.299468 GCTCATAGAGGACGGCGTG 60.299 63.158 21.19 0.00 0.00 5.34
1517 3647 8.587608 CCAATCTCTATTCTTCTAGCTTCTGAT 58.412 37.037 0.00 0.00 0.00 2.90
1526 3984 6.511416 TCTTCTAGCTTCTGATTCTGTATGC 58.489 40.000 0.00 0.00 0.00 3.14
1528 3986 6.477053 TCTAGCTTCTGATTCTGTATGCTT 57.523 37.500 0.00 0.00 0.00 3.91
1531 3989 6.192234 AGCTTCTGATTCTGTATGCTTTTG 57.808 37.500 0.00 0.00 0.00 2.44
1543 4001 3.509967 GTATGCTTTTGCTTACTTGGGGT 59.490 43.478 6.77 0.00 46.33 4.95
1548 4006 4.809673 CTTTTGCTTACTTGGGGTTGATC 58.190 43.478 0.00 0.00 0.00 2.92
1560 4247 4.090588 TTGATCCCCGGCGTGGTC 62.091 66.667 8.58 6.20 35.15 4.02
2169 4867 2.503256 GTCACTTGACGTGTCGACC 58.497 57.895 14.12 3.43 44.16 4.79
2171 4869 1.298863 CACTTGACGTGTCGACCGT 60.299 57.895 25.19 25.19 42.06 4.83
2172 4870 0.041047 CACTTGACGTGTCGACCGTA 60.041 55.000 25.04 14.01 38.92 4.02
2175 4873 2.202401 GACGTGTCGACCGTAGCC 60.202 66.667 25.04 13.67 38.92 3.93
2176 4874 3.989566 GACGTGTCGACCGTAGCCG 62.990 68.421 25.04 14.65 38.92 5.52
2179 4877 3.807538 TGTCGACCGTAGCCGAGC 61.808 66.667 14.12 0.00 35.31 5.03
2180 4878 3.807538 GTCGACCGTAGCCGAGCA 61.808 66.667 3.51 0.00 35.31 4.26
2181 4879 3.506096 TCGACCGTAGCCGAGCAG 61.506 66.667 0.00 0.00 35.63 4.24
2182 4880 3.812019 CGACCGTAGCCGAGCAGT 61.812 66.667 0.00 0.00 35.63 4.40
2183 4881 2.202623 GACCGTAGCCGAGCAGTG 60.203 66.667 0.00 0.00 35.63 3.66
2184 4882 4.436998 ACCGTAGCCGAGCAGTGC 62.437 66.667 7.13 7.13 35.63 4.40
2252 4994 2.690778 GGTGGCATGCTTCGTGTCC 61.691 63.158 18.92 6.16 0.00 4.02
2571 5313 0.654683 GCTAAGCCAATGAGCGAGTG 59.345 55.000 0.00 0.00 38.01 3.51
2576 5322 1.725665 CCAATGAGCGAGTGCCATG 59.274 57.895 0.00 0.00 44.31 3.66
2578 5324 1.377594 AATGAGCGAGTGCCATGCA 60.378 52.632 0.00 0.00 44.31 3.96
2596 5342 7.106239 GCCATGCACTGTAATAATACTCCTAT 58.894 38.462 0.00 0.00 32.98 2.57
2597 5343 7.065085 GCCATGCACTGTAATAATACTCCTATG 59.935 40.741 0.00 0.00 32.98 2.23
2628 5374 3.039588 GTGTACGTGGCGGGTGTG 61.040 66.667 0.00 0.00 0.00 3.82
2642 5388 2.779506 GGGTGTGGGTATAGCTTATGC 58.220 52.381 0.00 0.00 40.05 3.14
2649 5395 2.812011 GGGTATAGCTTATGCGGTTTGG 59.188 50.000 0.00 0.00 45.42 3.28
2650 5396 3.495453 GGGTATAGCTTATGCGGTTTGGA 60.495 47.826 0.00 0.00 45.42 3.53
2651 5397 3.746492 GGTATAGCTTATGCGGTTTGGAG 59.254 47.826 0.00 0.00 45.42 3.86
2652 5398 1.663695 TAGCTTATGCGGTTTGGAGC 58.336 50.000 0.00 0.00 45.42 4.70
2657 5403 2.650196 TGCGGTTTGGAGCAATGC 59.350 55.556 0.00 0.00 40.78 3.56
2658 5404 1.902918 TGCGGTTTGGAGCAATGCT 60.903 52.632 7.79 7.79 43.88 3.79
2659 5405 0.607762 TGCGGTTTGGAGCAATGCTA 60.608 50.000 8.12 0.00 39.88 3.49
2660 5406 0.179163 GCGGTTTGGAGCAATGCTAC 60.179 55.000 11.21 11.21 39.88 3.58
2661 5407 0.096976 CGGTTTGGAGCAATGCTACG 59.903 55.000 13.40 5.40 43.58 3.51
2662 5408 0.179163 GGTTTGGAGCAATGCTACGC 60.179 55.000 13.40 5.51 43.58 4.42
2663 5409 0.521242 GTTTGGAGCAATGCTACGCG 60.521 55.000 13.40 3.53 43.58 6.01
2664 5410 2.252127 TTTGGAGCAATGCTACGCGC 62.252 55.000 13.40 0.00 43.58 6.86
2677 5423 2.879462 CGCGCACGTACTCCCTTC 60.879 66.667 8.75 0.00 33.53 3.46
2678 5424 2.879462 GCGCACGTACTCCCTTCG 60.879 66.667 0.30 0.00 0.00 3.79
2679 5425 2.202570 CGCACGTACTCCCTTCGG 60.203 66.667 0.00 0.00 0.00 4.30
2680 5426 2.968206 GCACGTACTCCCTTCGGT 59.032 61.111 0.00 0.00 0.00 4.69
2681 5427 1.153881 GCACGTACTCCCTTCGGTC 60.154 63.158 0.00 0.00 0.00 4.79
2682 5428 1.509923 CACGTACTCCCTTCGGTCC 59.490 63.158 0.00 0.00 0.00 4.46
2683 5429 0.964358 CACGTACTCCCTTCGGTCCT 60.964 60.000 0.00 0.00 0.00 3.85
2684 5430 0.251519 ACGTACTCCCTTCGGTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
2685 5431 0.893447 CGTACTCCCTTCGGTCCTTT 59.107 55.000 0.00 0.00 0.00 3.11
2686 5432 1.274447 CGTACTCCCTTCGGTCCTTTT 59.726 52.381 0.00 0.00 0.00 2.27
2687 5433 2.289257 CGTACTCCCTTCGGTCCTTTTT 60.289 50.000 0.00 0.00 0.00 1.94
2688 5434 3.056607 CGTACTCCCTTCGGTCCTTTTTA 60.057 47.826 0.00 0.00 0.00 1.52
2689 5435 3.413846 ACTCCCTTCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
2690 5436 2.977580 ACTCCCTTCGGTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
2691 5437 3.007723 ACTCCCTTCGGTCCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
2692 5438 3.245441 TCCCTTCGGTCCTTTTTACTCT 58.755 45.455 0.00 0.00 0.00 3.24
2693 5439 3.007614 TCCCTTCGGTCCTTTTTACTCTG 59.992 47.826 0.00 0.00 0.00 3.35
2694 5440 2.742589 CCTTCGGTCCTTTTTACTCTGC 59.257 50.000 0.00 0.00 0.00 4.26
2695 5441 3.399330 CTTCGGTCCTTTTTACTCTGCA 58.601 45.455 0.00 0.00 0.00 4.41
2696 5442 3.695830 TCGGTCCTTTTTACTCTGCAT 57.304 42.857 0.00 0.00 0.00 3.96
2697 5443 4.811969 TCGGTCCTTTTTACTCTGCATA 57.188 40.909 0.00 0.00 0.00 3.14
2698 5444 5.353394 TCGGTCCTTTTTACTCTGCATAT 57.647 39.130 0.00 0.00 0.00 1.78
2699 5445 6.474140 TCGGTCCTTTTTACTCTGCATATA 57.526 37.500 0.00 0.00 0.00 0.86
2700 5446 6.880484 TCGGTCCTTTTTACTCTGCATATAA 58.120 36.000 0.00 0.00 0.00 0.98
2701 5447 6.984474 TCGGTCCTTTTTACTCTGCATATAAG 59.016 38.462 0.00 0.00 0.00 1.73
2702 5448 6.984474 CGGTCCTTTTTACTCTGCATATAAGA 59.016 38.462 0.00 0.00 0.00 2.10
2703 5449 7.494625 CGGTCCTTTTTACTCTGCATATAAGAA 59.505 37.037 0.00 0.00 0.00 2.52
2704 5450 9.343539 GGTCCTTTTTACTCTGCATATAAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
2776 5522 9.920946 AAATATCAACATCTACCATGGTAAAGT 57.079 29.630 24.59 18.90 0.00 2.66
2779 5525 8.908786 ATCAACATCTACCATGGTAAAGTATG 57.091 34.615 24.59 23.27 0.00 2.39
2780 5526 7.857456 TCAACATCTACCATGGTAAAGTATGT 58.143 34.615 24.59 23.80 0.00 2.29
2781 5527 7.768582 TCAACATCTACCATGGTAAAGTATGTG 59.231 37.037 26.50 21.96 0.00 3.21
2782 5528 6.055588 ACATCTACCATGGTAAAGTATGTGC 58.944 40.000 25.84 0.00 0.00 4.57
2783 5529 4.689071 TCTACCATGGTAAAGTATGTGCG 58.311 43.478 24.59 9.69 0.00 5.34
2784 5530 3.343941 ACCATGGTAAAGTATGTGCGT 57.656 42.857 18.10 0.00 0.00 5.24
2785 5531 3.006940 ACCATGGTAAAGTATGTGCGTG 58.993 45.455 18.10 0.00 0.00 5.34
2786 5532 3.006940 CCATGGTAAAGTATGTGCGTGT 58.993 45.455 2.57 0.00 0.00 4.49
2787 5533 4.185394 CCATGGTAAAGTATGTGCGTGTA 58.815 43.478 2.57 0.00 0.00 2.90
2788 5534 4.270084 CCATGGTAAAGTATGTGCGTGTAG 59.730 45.833 2.57 0.00 0.00 2.74
2806 5552 0.537143 AGCATTGCTCCGGTTTGTGA 60.537 50.000 5.03 0.00 30.62 3.58
2810 5556 1.155424 TTGCTCCGGTTTGTGACGAC 61.155 55.000 0.00 0.00 0.00 4.34
2811 5557 1.300697 GCTCCGGTTTGTGACGACT 60.301 57.895 0.00 0.00 0.00 4.18
2818 5564 2.479837 GGTTTGTGACGACTGACATCA 58.520 47.619 0.00 0.00 0.00 3.07
2834 5580 1.548719 CATCACCGGGTCAGTCAAGTA 59.451 52.381 6.32 0.00 0.00 2.24
2852 5598 7.996644 AGTCAAGTATTTTTCTAGTTGGGTCAA 59.003 33.333 0.00 0.00 34.29 3.18
2933 6976 2.361610 CCATGGCTTCGGGTGCTT 60.362 61.111 0.00 0.00 0.00 3.91
2996 7040 3.200483 TCATGCATCGAGGACATCAAAG 58.800 45.455 0.00 0.00 0.00 2.77
3013 7057 9.233232 GACATCAAAGTTCGAGTTAAAAATGTT 57.767 29.630 0.00 0.00 0.00 2.71
3062 7106 5.750067 GTGTCATCATGGTTCAAATTATGCC 59.250 40.000 0.00 0.00 0.00 4.40
3067 7111 0.100503 GGTTCAAATTATGCCGCGCT 59.899 50.000 5.56 0.00 0.00 5.92
3069 7113 1.583404 GTTCAAATTATGCCGCGCTTG 59.417 47.619 5.56 0.00 0.00 4.01
3070 7114 1.090728 TCAAATTATGCCGCGCTTGA 58.909 45.000 5.56 2.75 0.00 3.02
3071 7115 1.063912 TCAAATTATGCCGCGCTTGAG 59.936 47.619 5.56 0.00 0.00 3.02
3117 7161 7.637631 TTGTGTTAGCCAAATGATAGCATTA 57.362 32.000 6.64 0.00 43.71 1.90
3155 7199 1.004918 GTCCCAAGTAGCTGCGTGT 60.005 57.895 15.68 0.00 0.00 4.49
3156 7200 1.005037 TCCCAAGTAGCTGCGTGTG 60.005 57.895 15.68 5.48 0.00 3.82
3157 7201 2.680913 CCCAAGTAGCTGCGTGTGC 61.681 63.158 15.68 0.00 43.20 4.57
3158 7202 2.680913 CCAAGTAGCTGCGTGTGCC 61.681 63.158 15.68 0.00 41.78 5.01
3159 7203 1.669115 CAAGTAGCTGCGTGTGCCT 60.669 57.895 9.47 0.00 41.78 4.75
3160 7204 1.669115 AAGTAGCTGCGTGTGCCTG 60.669 57.895 0.00 0.00 41.78 4.85
3165 7209 4.695231 CTGCGTGTGCCTGCTTGC 62.695 66.667 0.00 0.00 41.78 4.01
3174 7218 1.462616 TGCCTGCTTGCACGATTTAT 58.537 45.000 0.00 0.00 36.04 1.40
3177 7221 2.016318 CCTGCTTGCACGATTTATCCA 58.984 47.619 0.00 0.00 0.00 3.41
3184 7228 1.742831 GCACGATTTATCCAAGCACCA 59.257 47.619 0.00 0.00 0.00 4.17
3349 7439 5.888161 CCTAACCAGGCCATCCATTTATATC 59.112 44.000 5.01 0.00 34.35 1.63
3352 7442 4.264083 ACCAGGCCATCCATTTATATCCAG 60.264 45.833 5.01 0.00 33.74 3.86
3353 7443 4.264083 CCAGGCCATCCATTTATATCCAGT 60.264 45.833 5.01 0.00 33.74 4.00
3357 7447 5.280676 GGCCATCCATTTATATCCAGTCAGA 60.281 44.000 0.00 0.00 0.00 3.27
3358 7448 5.879223 GCCATCCATTTATATCCAGTCAGAG 59.121 44.000 0.00 0.00 0.00 3.35
3359 7449 6.521427 GCCATCCATTTATATCCAGTCAGAGT 60.521 42.308 0.00 0.00 0.00 3.24
3360 7450 7.102346 CCATCCATTTATATCCAGTCAGAGTC 58.898 42.308 0.00 0.00 0.00 3.36
3361 7451 7.256439 CCATCCATTTATATCCAGTCAGAGTCA 60.256 40.741 0.00 0.00 0.00 3.41
3362 7452 7.675161 TCCATTTATATCCAGTCAGAGTCAA 57.325 36.000 0.00 0.00 0.00 3.18
3363 7453 7.500992 TCCATTTATATCCAGTCAGAGTCAAC 58.499 38.462 0.00 0.00 0.00 3.18
3364 7454 6.708054 CCATTTATATCCAGTCAGAGTCAACC 59.292 42.308 0.00 0.00 0.00 3.77
3365 7455 5.871396 TTATATCCAGTCAGAGTCAACCC 57.129 43.478 0.00 0.00 0.00 4.11
3366 7456 2.030027 ATCCAGTCAGAGTCAACCCA 57.970 50.000 0.00 0.00 0.00 4.51
3367 7457 1.801242 TCCAGTCAGAGTCAACCCAA 58.199 50.000 0.00 0.00 0.00 4.12
3368 7458 2.123589 TCCAGTCAGAGTCAACCCAAA 58.876 47.619 0.00 0.00 0.00 3.28
3369 7459 2.507886 TCCAGTCAGAGTCAACCCAAAA 59.492 45.455 0.00 0.00 0.00 2.44
3370 7460 2.618709 CCAGTCAGAGTCAACCCAAAAC 59.381 50.000 0.00 0.00 0.00 2.43
3371 7461 3.545703 CAGTCAGAGTCAACCCAAAACT 58.454 45.455 0.00 0.00 0.00 2.66
3372 7462 4.444306 CCAGTCAGAGTCAACCCAAAACTA 60.444 45.833 0.00 0.00 0.00 2.24
3373 7463 5.123227 CAGTCAGAGTCAACCCAAAACTAA 58.877 41.667 0.00 0.00 0.00 2.24
3374 7464 5.765182 CAGTCAGAGTCAACCCAAAACTAAT 59.235 40.000 0.00 0.00 0.00 1.73
3375 7465 6.934645 CAGTCAGAGTCAACCCAAAACTAATA 59.065 38.462 0.00 0.00 0.00 0.98
3376 7466 7.607991 CAGTCAGAGTCAACCCAAAACTAATAT 59.392 37.037 0.00 0.00 0.00 1.28
3424 7514 8.917414 ATTCAGTGGAGCCCTAGATATATAAA 57.083 34.615 0.00 0.00 0.00 1.40
3482 7572 1.269517 CGTTCTCTAGCAGGCATCTCC 60.270 57.143 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.395690 CAATGCCTTCGTCGCGAC 59.604 61.111 28.96 28.96 34.89 5.19
12 13 3.487202 GCAATGCCTTCGTCGCGA 61.487 61.111 3.71 3.71 0.00 5.87
33 34 1.518903 GGTCACCAAGTGCAAGGAGC 61.519 60.000 7.99 0.00 45.96 4.70
35 36 0.465460 GTGGTCACCAAGTGCAAGGA 60.465 55.000 0.00 0.00 34.18 3.36
47 48 2.113243 GAGGGTGTGGAGGTGGTCAC 62.113 65.000 0.00 0.00 34.71 3.67
48 49 1.841556 GAGGGTGTGGAGGTGGTCA 60.842 63.158 0.00 0.00 0.00 4.02
50 51 2.923035 CGAGGGTGTGGAGGTGGT 60.923 66.667 0.00 0.00 0.00 4.16
51 52 2.923035 ACGAGGGTGTGGAGGTGG 60.923 66.667 0.00 0.00 0.00 4.61
52 53 2.657237 GACGAGGGTGTGGAGGTG 59.343 66.667 0.00 0.00 0.00 4.00
53 54 2.989824 CGACGAGGGTGTGGAGGT 60.990 66.667 0.00 0.00 0.00 3.85
54 55 2.571216 AACGACGAGGGTGTGGAGG 61.571 63.158 0.00 0.00 0.00 4.30
55 56 1.372997 CAACGACGAGGGTGTGGAG 60.373 63.158 0.00 0.00 0.00 3.86
58 59 0.944311 CCTTCAACGACGAGGGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
60 61 2.027625 GCCTTCAACGACGAGGGTG 61.028 63.158 0.00 0.00 34.68 4.61
61 62 2.342648 GCCTTCAACGACGAGGGT 59.657 61.111 0.00 0.00 34.68 4.34
62 63 2.558554 ATCGCCTTCAACGACGAGGG 62.559 60.000 0.00 0.00 43.23 4.30
63 64 1.140407 GATCGCCTTCAACGACGAGG 61.140 60.000 0.00 0.00 43.23 4.63
64 65 0.456142 TGATCGCCTTCAACGACGAG 60.456 55.000 0.00 0.00 43.23 4.18
65 66 0.038983 TTGATCGCCTTCAACGACGA 60.039 50.000 0.00 0.00 43.23 4.20
67 68 3.949313 GTTGATCGCCTTCAACGAC 57.051 52.632 9.81 0.00 44.19 4.34
71 72 1.798223 CGTGAAGTTGATCGCCTTCAA 59.202 47.619 21.62 9.11 46.17 2.69
72 73 1.428448 CGTGAAGTTGATCGCCTTCA 58.572 50.000 18.02 18.02 43.47 3.02
73 74 0.721718 CCGTGAAGTTGATCGCCTTC 59.278 55.000 14.23 14.23 38.03 3.46
74 75 0.673644 CCCGTGAAGTTGATCGCCTT 60.674 55.000 0.00 0.00 0.00 4.35
76 77 2.750888 GCCCGTGAAGTTGATCGCC 61.751 63.158 0.00 0.00 0.00 5.54
77 78 2.785258 GCCCGTGAAGTTGATCGC 59.215 61.111 0.00 0.00 0.00 4.58
78 79 0.806102 ATCGCCCGTGAAGTTGATCG 60.806 55.000 0.00 0.00 0.00 3.69
79 80 0.931005 GATCGCCCGTGAAGTTGATC 59.069 55.000 0.00 0.00 0.00 2.92
80 81 0.537188 AGATCGCCCGTGAAGTTGAT 59.463 50.000 0.00 0.00 0.00 2.57
81 82 0.108804 GAGATCGCCCGTGAAGTTGA 60.109 55.000 0.00 0.00 0.00 3.18
82 83 1.413767 CGAGATCGCCCGTGAAGTTG 61.414 60.000 0.00 0.00 0.00 3.16
83 84 1.153823 CGAGATCGCCCGTGAAGTT 60.154 57.895 0.00 0.00 0.00 2.66
84 85 1.592400 TTCGAGATCGCCCGTGAAGT 61.592 55.000 0.00 0.00 39.60 3.01
85 86 0.249073 ATTCGAGATCGCCCGTGAAG 60.249 55.000 0.00 0.00 39.60 3.02
86 87 0.174845 AATTCGAGATCGCCCGTGAA 59.825 50.000 0.00 0.00 39.60 3.18
87 88 0.248907 GAATTCGAGATCGCCCGTGA 60.249 55.000 0.00 0.00 39.60 4.35
89 90 0.249073 CAGAATTCGAGATCGCCCGT 60.249 55.000 0.00 0.00 39.60 5.28
90 91 0.030773 TCAGAATTCGAGATCGCCCG 59.969 55.000 0.00 0.00 39.60 6.13
91 92 2.131183 CTTCAGAATTCGAGATCGCCC 58.869 52.381 0.00 0.00 39.60 6.13
92 93 3.085443 TCTTCAGAATTCGAGATCGCC 57.915 47.619 0.00 0.00 39.60 5.54
94 95 3.911365 CGGATCTTCAGAATTCGAGATCG 59.089 47.826 25.80 20.90 43.35 3.69
95 96 4.865776 ACGGATCTTCAGAATTCGAGATC 58.134 43.478 25.38 25.38 42.27 2.75
96 97 4.927978 ACGGATCTTCAGAATTCGAGAT 57.072 40.909 16.69 16.69 0.00 2.75
97 98 4.720649 AACGGATCTTCAGAATTCGAGA 57.279 40.909 10.31 10.31 0.00 4.04
99 100 5.234329 GCATAAACGGATCTTCAGAATTCGA 59.766 40.000 0.00 0.00 0.00 3.71
100 101 5.435557 GCATAAACGGATCTTCAGAATTCG 58.564 41.667 0.00 0.00 0.00 3.34
101 102 5.559035 CGGCATAAACGGATCTTCAGAATTC 60.559 44.000 0.00 0.00 0.00 2.17
102 103 4.273480 CGGCATAAACGGATCTTCAGAATT 59.727 41.667 0.00 0.00 0.00 2.17
103 104 3.809832 CGGCATAAACGGATCTTCAGAAT 59.190 43.478 0.00 0.00 0.00 2.40
104 105 3.194861 CGGCATAAACGGATCTTCAGAA 58.805 45.455 0.00 0.00 0.00 3.02
105 106 2.167693 ACGGCATAAACGGATCTTCAGA 59.832 45.455 0.00 0.00 35.23 3.27
106 107 2.285220 CACGGCATAAACGGATCTTCAG 59.715 50.000 0.00 0.00 35.23 3.02
107 108 2.276201 CACGGCATAAACGGATCTTCA 58.724 47.619 0.00 0.00 35.23 3.02
109 110 2.396590 ACACGGCATAAACGGATCTT 57.603 45.000 0.00 0.00 35.23 2.40
110 111 2.006888 CAACACGGCATAAACGGATCT 58.993 47.619 0.00 0.00 35.23 2.75
111 112 1.531058 GCAACACGGCATAAACGGATC 60.531 52.381 0.00 0.00 35.23 3.36
112 113 0.450184 GCAACACGGCATAAACGGAT 59.550 50.000 0.00 0.00 35.23 4.18
113 114 0.885150 TGCAACACGGCATAAACGGA 60.885 50.000 0.00 0.00 39.25 4.69
114 115 1.576920 TGCAACACGGCATAAACGG 59.423 52.632 0.00 0.00 39.25 4.44
137 138 2.436087 ATATACGTGCTCGGCTGGGC 62.436 60.000 11.59 11.59 41.85 5.36
138 139 0.885879 TATATACGTGCTCGGCTGGG 59.114 55.000 13.32 0.00 41.85 4.45
139 140 1.540267 ACTATATACGTGCTCGGCTGG 59.460 52.381 13.32 0.62 41.85 4.85
140 141 2.991434 ACTATATACGTGCTCGGCTG 57.009 50.000 13.32 0.00 41.85 4.85
141 142 5.640189 AAATACTATATACGTGCTCGGCT 57.360 39.130 13.32 1.71 41.85 5.52
165 166 9.085250 TGATATTCGTACGCAATTTTACTGTAA 57.915 29.630 11.24 0.00 0.00 2.41
166 167 8.533965 GTGATATTCGTACGCAATTTTACTGTA 58.466 33.333 11.24 0.00 0.00 2.74
169 170 6.291955 CGGTGATATTCGTACGCAATTTTACT 60.292 38.462 11.24 0.00 0.00 2.24
170 171 5.837191 CGGTGATATTCGTACGCAATTTTAC 59.163 40.000 11.24 12.04 0.00 2.01
171 172 5.050904 CCGGTGATATTCGTACGCAATTTTA 60.051 40.000 11.24 1.60 0.00 1.52
172 173 4.260456 CCGGTGATATTCGTACGCAATTTT 60.260 41.667 11.24 3.44 0.00 1.82
174 175 2.798283 CCGGTGATATTCGTACGCAATT 59.202 45.455 11.24 0.00 0.00 2.32
175 176 2.400399 CCGGTGATATTCGTACGCAAT 58.600 47.619 11.24 13.27 0.00 3.56
176 177 1.842720 CCGGTGATATTCGTACGCAA 58.157 50.000 11.24 6.50 0.00 4.85
177 178 0.595567 GCCGGTGATATTCGTACGCA 60.596 55.000 11.24 0.00 0.00 5.24
179 180 0.031043 TGGCCGGTGATATTCGTACG 59.969 55.000 9.53 9.53 0.00 3.67
180 181 1.068127 AGTGGCCGGTGATATTCGTAC 59.932 52.381 1.90 0.00 0.00 3.67
181 182 1.067974 CAGTGGCCGGTGATATTCGTA 59.932 52.381 1.90 0.00 0.00 3.43
182 183 0.179084 CAGTGGCCGGTGATATTCGT 60.179 55.000 1.90 0.00 0.00 3.85
184 185 0.535102 CCCAGTGGCCGGTGATATTC 60.535 60.000 2.61 0.00 0.00 1.75
185 186 1.531748 CCCAGTGGCCGGTGATATT 59.468 57.895 2.61 0.00 0.00 1.28
186 187 2.452064 CCCCAGTGGCCGGTGATAT 61.452 63.158 2.61 0.00 0.00 1.63
187 188 3.087253 CCCCAGTGGCCGGTGATA 61.087 66.667 2.61 0.00 0.00 2.15
196 197 3.770040 TCGTCGATGCCCCAGTGG 61.770 66.667 0.63 0.63 37.09 4.00
197 198 2.507110 AAGTCGTCGATGCCCCAGTG 62.507 60.000 0.00 0.00 0.00 3.66
198 199 1.827399 AAAGTCGTCGATGCCCCAGT 61.827 55.000 0.00 0.00 0.00 4.00
199 200 0.673644 AAAAGTCGTCGATGCCCCAG 60.674 55.000 0.00 0.00 0.00 4.45
200 201 0.609151 TAAAAGTCGTCGATGCCCCA 59.391 50.000 0.00 0.00 0.00 4.96
202 203 1.004595 GGTAAAAGTCGTCGATGCCC 58.995 55.000 0.00 0.00 0.00 5.36
203 204 1.392510 GTGGTAAAAGTCGTCGATGCC 59.607 52.381 0.00 0.00 0.00 4.40
204 205 2.334838 AGTGGTAAAAGTCGTCGATGC 58.665 47.619 0.00 0.00 0.00 3.91
205 206 6.020599 CAGATAAGTGGTAAAAGTCGTCGATG 60.021 42.308 0.00 0.00 0.00 3.84
206 207 6.034591 CAGATAAGTGGTAAAAGTCGTCGAT 58.965 40.000 0.00 0.00 0.00 3.59
207 208 5.181811 TCAGATAAGTGGTAAAAGTCGTCGA 59.818 40.000 0.00 0.00 0.00 4.20
208 209 5.396484 TCAGATAAGTGGTAAAAGTCGTCG 58.604 41.667 0.00 0.00 0.00 5.12
210 211 6.645415 CAGTTCAGATAAGTGGTAAAAGTCGT 59.355 38.462 0.00 0.00 0.00 4.34
211 212 6.866770 TCAGTTCAGATAAGTGGTAAAAGTCG 59.133 38.462 0.00 0.00 0.00 4.18
212 213 7.873505 AGTCAGTTCAGATAAGTGGTAAAAGTC 59.126 37.037 0.00 0.00 0.00 3.01
213 214 7.657761 CAGTCAGTTCAGATAAGTGGTAAAAGT 59.342 37.037 0.00 0.00 0.00 2.66
214 215 7.118390 CCAGTCAGTTCAGATAAGTGGTAAAAG 59.882 40.741 0.00 0.00 0.00 2.27
215 216 6.934645 CCAGTCAGTTCAGATAAGTGGTAAAA 59.065 38.462 0.00 0.00 0.00 1.52
224 225 3.428999 GCGCTACCAGTCAGTTCAGATAA 60.429 47.826 0.00 0.00 0.00 1.75
227 228 0.243907 GCGCTACCAGTCAGTTCAGA 59.756 55.000 0.00 0.00 0.00 3.27
274 278 3.875134 CCGTGGTTTCTTTAGTGTCAACT 59.125 43.478 0.00 0.00 40.67 3.16
298 302 3.399181 ACCATGACCGCCCGACAT 61.399 61.111 0.00 0.00 0.00 3.06
337 341 3.413558 CTTACGCGCCAACAAACTTATC 58.586 45.455 5.73 0.00 0.00 1.75
340 344 0.309612 CCTTACGCGCCAACAAACTT 59.690 50.000 5.73 0.00 0.00 2.66
415 424 3.300667 CTGGCGAACGAACTGCAGC 62.301 63.158 15.27 0.00 0.00 5.25
439 448 3.904800 TTGATCTGGCTGGTCGAATTA 57.095 42.857 0.00 0.00 0.00 1.40
445 454 1.576356 GACGATTGATCTGGCTGGTC 58.424 55.000 0.00 0.00 0.00 4.02
449 458 1.043816 ATCGGACGATTGATCTGGCT 58.956 50.000 0.65 0.00 0.00 4.75
520 709 1.996191 GATGAAGTTGTCGGCAGAGAC 59.004 52.381 0.00 0.00 41.30 3.36
522 711 1.998315 CTGATGAAGTTGTCGGCAGAG 59.002 52.381 0.00 0.00 33.89 3.35
523 712 1.941209 GCTGATGAAGTTGTCGGCAGA 60.941 52.381 11.83 0.00 44.28 4.26
526 715 1.421485 CGCTGATGAAGTTGTCGGC 59.579 57.895 8.10 8.10 42.05 5.54
530 719 1.580845 GCTGCCGCTGATGAAGTTGT 61.581 55.000 0.73 0.00 0.00 3.32
533 722 2.667418 AGCTGCCGCTGATGAAGT 59.333 55.556 0.21 0.00 46.86 3.01
542 731 1.809209 GAAGAGTCAGAGCTGCCGC 60.809 63.158 0.00 0.00 0.00 6.53
544 733 2.028203 AGAAAGAAGAGTCAGAGCTGCC 60.028 50.000 0.00 0.00 0.00 4.85
547 736 6.946009 AGTACTAAGAAAGAAGAGTCAGAGCT 59.054 38.462 0.00 0.00 0.00 4.09
549 738 8.395633 GCTAGTACTAAGAAAGAAGAGTCAGAG 58.604 40.741 3.76 0.00 0.00 3.35
550 739 7.064847 CGCTAGTACTAAGAAAGAAGAGTCAGA 59.935 40.741 3.76 0.00 0.00 3.27
551 740 7.184106 CGCTAGTACTAAGAAAGAAGAGTCAG 58.816 42.308 3.76 0.00 0.00 3.51
562 751 4.275443 GCCTTCTAGCGCTAGTACTAAGAA 59.725 45.833 36.45 25.10 34.84 2.52
595 784 1.888215 ATGCTTATCGGATGCAGGTG 58.112 50.000 8.66 0.00 41.17 4.00
618 811 4.329801 TCGCTTCTGTACAGTGCAATAATG 59.670 41.667 28.54 18.02 0.00 1.90
632 825 7.907214 AGAAAGTACAATTAATCGCTTCTGT 57.093 32.000 0.00 0.00 0.00 3.41
648 841 7.644157 ACAAGCTTTTTCGAATGAAGAAAGTAC 59.356 33.333 19.96 7.15 38.61 2.73
649 842 7.703328 ACAAGCTTTTTCGAATGAAGAAAGTA 58.297 30.769 19.96 0.00 38.61 2.24
650 843 6.564328 ACAAGCTTTTTCGAATGAAGAAAGT 58.436 32.000 19.96 12.98 38.61 2.66
651 844 6.142958 GGACAAGCTTTTTCGAATGAAGAAAG 59.857 38.462 19.96 16.48 38.61 2.62
652 845 5.977129 GGACAAGCTTTTTCGAATGAAGAAA 59.023 36.000 19.96 8.39 35.06 2.52
653 846 5.507315 GGGACAAGCTTTTTCGAATGAAGAA 60.507 40.000 19.96 1.22 35.06 2.52
654 847 4.023193 GGGACAAGCTTTTTCGAATGAAGA 60.023 41.667 19.96 0.00 35.06 2.87
655 848 4.229876 GGGACAAGCTTTTTCGAATGAAG 58.770 43.478 14.24 14.24 35.06 3.02
694 887 9.853177 CCCTTAAATAGGTGAGTAGATTCATTT 57.147 33.333 0.00 0.00 43.07 2.32
695 888 9.225682 TCCCTTAAATAGGTGAGTAGATTCATT 57.774 33.333 0.00 0.00 43.07 2.57
696 889 8.798975 TCCCTTAAATAGGTGAGTAGATTCAT 57.201 34.615 0.00 0.00 43.07 2.57
700 893 9.900112 ACTTATCCCTTAAATAGGTGAGTAGAT 57.100 33.333 0.00 0.00 43.07 1.98
701 894 9.725206 AACTTATCCCTTAAATAGGTGAGTAGA 57.275 33.333 0.00 0.00 43.07 2.59
727 920 5.529430 TCATTCAAAGCTACTGTCCGAAAAA 59.471 36.000 0.00 0.00 0.00 1.94
729 922 4.451096 GTCATTCAAAGCTACTGTCCGAAA 59.549 41.667 0.00 0.00 0.00 3.46
730 923 3.994392 GTCATTCAAAGCTACTGTCCGAA 59.006 43.478 0.00 0.00 0.00 4.30
731 924 3.258372 AGTCATTCAAAGCTACTGTCCGA 59.742 43.478 0.00 0.00 0.00 4.55
732 925 3.589988 AGTCATTCAAAGCTACTGTCCG 58.410 45.455 0.00 0.00 0.00 4.79
733 926 7.414540 CCAAATAGTCATTCAAAGCTACTGTCC 60.415 40.741 0.00 0.00 0.00 4.02
735 928 6.127897 GCCAAATAGTCATTCAAAGCTACTGT 60.128 38.462 0.00 0.00 0.00 3.55
736 929 6.094603 AGCCAAATAGTCATTCAAAGCTACTG 59.905 38.462 0.00 0.00 0.00 2.74
737 930 6.183347 AGCCAAATAGTCATTCAAAGCTACT 58.817 36.000 0.00 0.00 0.00 2.57
754 947 1.552578 TCTGCAGCATGAAGCCAAAT 58.447 45.000 9.47 0.00 43.41 2.32
786 980 1.532604 CGTGAGCTGGTGGTGAGGTA 61.533 60.000 0.00 0.00 0.00 3.08
795 989 0.393944 TATCTCGGTCGTGAGCTGGT 60.394 55.000 0.00 0.00 35.90 4.00
818 1012 9.270104 GCAGAAGCTTCCTGCGAAATAGTAAAT 62.270 40.741 24.92 2.09 46.03 1.40
819 1013 8.049236 GCAGAAGCTTCCTGCGAAATAGTAAA 62.049 42.308 24.92 0.00 46.03 2.01
822 1016 4.478504 GCAGAAGCTTCCTGCGAAATAGT 61.479 47.826 24.92 3.53 46.03 2.12
904 1265 2.030562 AGTAGGGTGTGTGTGCGC 59.969 61.111 0.00 0.00 0.00 6.09
905 1266 2.317609 GCAGTAGGGTGTGTGTGCG 61.318 63.158 0.00 0.00 0.00 5.34
906 1267 2.317609 CGCAGTAGGGTGTGTGTGC 61.318 63.158 0.00 0.00 0.00 4.57
909 1270 0.586319 CAAACGCAGTAGGGTGTGTG 59.414 55.000 0.00 0.00 45.00 3.82
916 1277 1.009829 GGAGATGCAAACGCAGTAGG 58.990 55.000 0.00 0.00 45.00 3.18
977 1347 0.558712 TTAGCCTCTCCCTCTCCTCC 59.441 60.000 0.00 0.00 0.00 4.30
978 1348 1.995376 CTTAGCCTCTCCCTCTCCTC 58.005 60.000 0.00 0.00 0.00 3.71
979 1349 0.105709 GCTTAGCCTCTCCCTCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
1470 2353 2.165319 AAGTACCCTTGTCGTTGAGC 57.835 50.000 0.00 0.00 0.00 4.26
1506 3636 7.408123 CAAAAGCATACAGAATCAGAAGCTAG 58.592 38.462 0.00 0.00 0.00 3.42
1517 3647 5.048083 CCCAAGTAAGCAAAAGCATACAGAA 60.048 40.000 5.78 0.00 0.00 3.02
1526 3984 4.321974 GGATCAACCCCAAGTAAGCAAAAG 60.322 45.833 0.00 0.00 0.00 2.27
1528 3986 3.161866 GGATCAACCCCAAGTAAGCAAA 58.838 45.455 0.00 0.00 0.00 3.68
1543 4001 4.090588 GACCACGCCGGGGATCAA 62.091 66.667 27.23 0.00 40.22 2.57
1548 4006 3.840594 TATTCGACCACGCCGGGG 61.841 66.667 18.33 18.33 40.22 5.73
1558 4245 3.623060 TCCTACAGTACACGGTATTCGAC 59.377 47.826 0.00 0.00 42.43 4.20
1560 4247 4.534168 CATCCTACAGTACACGGTATTCG 58.466 47.826 0.00 0.00 45.88 3.34
2167 4865 4.436998 GCACTGCTCGGCTACGGT 62.437 66.667 0.00 0.00 41.39 4.83
2176 4874 2.048503 ACGTTACGGGCACTGCTC 60.049 61.111 10.20 0.00 39.14 4.26
2179 4877 0.876777 TTCACACGTTACGGGCACTG 60.877 55.000 7.01 0.00 42.99 3.66
2180 4878 0.034337 ATTCACACGTTACGGGCACT 59.966 50.000 7.01 0.00 31.12 4.40
2181 4879 0.441145 GATTCACACGTTACGGGCAC 59.559 55.000 7.01 0.00 31.12 5.01
2182 4880 0.319083 AGATTCACACGTTACGGGCA 59.681 50.000 7.01 0.00 31.12 5.36
2183 4881 0.719465 CAGATTCACACGTTACGGGC 59.281 55.000 7.01 0.00 31.12 6.13
2184 4882 2.074547 ACAGATTCACACGTTACGGG 57.925 50.000 5.12 5.12 35.82 5.28
2571 5313 5.308825 AGGAGTATTATTACAGTGCATGGC 58.691 41.667 0.00 0.00 0.00 4.40
2576 5322 6.807230 CCGTCATAGGAGTATTATTACAGTGC 59.193 42.308 0.00 0.00 0.00 4.40
2578 5324 9.228949 CTACCGTCATAGGAGTATTATTACAGT 57.771 37.037 0.00 0.00 34.73 3.55
2579 5325 9.228949 ACTACCGTCATAGGAGTATTATTACAG 57.771 37.037 0.00 0.00 34.73 2.74
2580 5326 9.006839 CACTACCGTCATAGGAGTATTATTACA 57.993 37.037 0.00 0.00 34.73 2.41
2581 5327 7.967303 GCACTACCGTCATAGGAGTATTATTAC 59.033 40.741 0.00 0.00 34.73 1.89
2582 5328 7.886970 AGCACTACCGTCATAGGAGTATTATTA 59.113 37.037 0.00 0.00 34.73 0.98
2583 5329 6.720288 AGCACTACCGTCATAGGAGTATTATT 59.280 38.462 0.00 0.00 34.73 1.40
2584 5330 6.151312 CAGCACTACCGTCATAGGAGTATTAT 59.849 42.308 0.00 0.00 34.73 1.28
2596 5342 1.001048 GTACACACAGCACTACCGTCA 60.001 52.381 0.00 0.00 0.00 4.35
2597 5343 1.694639 GTACACACAGCACTACCGTC 58.305 55.000 0.00 0.00 0.00 4.79
2628 5374 2.812011 CCAAACCGCATAAGCTATACCC 59.188 50.000 0.00 0.00 39.10 3.69
2642 5388 0.096976 CGTAGCATTGCTCCAAACCG 59.903 55.000 15.81 5.53 40.44 4.44
2660 5406 2.879462 GAAGGGAGTACGTGCGCG 60.879 66.667 19.78 19.78 44.93 6.86
2661 5407 2.879462 CGAAGGGAGTACGTGCGC 60.879 66.667 0.00 0.00 0.00 6.09
2674 5420 3.399330 TGCAGAGTAAAAAGGACCGAAG 58.601 45.455 0.00 0.00 0.00 3.79
2675 5421 3.478857 TGCAGAGTAAAAAGGACCGAA 57.521 42.857 0.00 0.00 0.00 4.30
2676 5422 3.695830 ATGCAGAGTAAAAAGGACCGA 57.304 42.857 0.00 0.00 0.00 4.69
2677 5423 6.984474 TCTTATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
2678 5424 8.732746 TTCTTATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
2750 5496 9.920946 ACTTTACCATGGTAGATGTTGATATTT 57.079 29.630 23.40 0.00 31.71 1.40
2753 5499 9.996554 CATACTTTACCATGGTAGATGTTGATA 57.003 33.333 23.40 3.93 31.71 2.15
2754 5500 8.494433 ACATACTTTACCATGGTAGATGTTGAT 58.506 33.333 23.40 12.10 31.71 2.57
2755 5501 7.768582 CACATACTTTACCATGGTAGATGTTGA 59.231 37.037 25.79 11.69 31.71 3.18
2756 5502 7.467267 GCACATACTTTACCATGGTAGATGTTG 60.467 40.741 25.79 21.94 31.71 3.33
2757 5503 6.542370 GCACATACTTTACCATGGTAGATGTT 59.458 38.462 25.79 15.03 31.71 2.71
2758 5504 6.055588 GCACATACTTTACCATGGTAGATGT 58.944 40.000 23.40 23.88 31.71 3.06
2759 5505 5.177511 CGCACATACTTTACCATGGTAGATG 59.822 44.000 23.40 23.36 31.71 2.90
2760 5506 5.163343 ACGCACATACTTTACCATGGTAGAT 60.163 40.000 23.40 15.37 31.71 1.98
2761 5507 4.160814 ACGCACATACTTTACCATGGTAGA 59.839 41.667 23.40 18.67 31.71 2.59
2762 5508 4.270084 CACGCACATACTTTACCATGGTAG 59.730 45.833 23.40 17.75 31.71 3.18
2763 5509 4.185394 CACGCACATACTTTACCATGGTA 58.815 43.478 21.05 21.05 0.00 3.25
2764 5510 3.006940 CACGCACATACTTTACCATGGT 58.993 45.455 23.55 23.55 0.00 3.55
2765 5511 3.006940 ACACGCACATACTTTACCATGG 58.993 45.455 11.19 11.19 0.00 3.66
2766 5512 4.260212 GCTACACGCACATACTTTACCATG 60.260 45.833 0.00 0.00 38.92 3.66
2767 5513 3.869246 GCTACACGCACATACTTTACCAT 59.131 43.478 0.00 0.00 38.92 3.55
2768 5514 3.255725 GCTACACGCACATACTTTACCA 58.744 45.455 0.00 0.00 38.92 3.25
2769 5515 3.255725 TGCTACACGCACATACTTTACC 58.744 45.455 0.00 0.00 45.47 2.85
2781 5527 2.703409 CGGAGCAATGCTACACGC 59.297 61.111 18.59 0.00 39.98 5.34
2782 5528 1.019278 AACCGGAGCAATGCTACACG 61.019 55.000 18.59 17.13 39.98 4.49
2783 5529 1.135689 CAAACCGGAGCAATGCTACAC 60.136 52.381 18.59 6.15 39.98 2.90
2784 5530 1.164411 CAAACCGGAGCAATGCTACA 58.836 50.000 18.59 0.00 39.98 2.74
2785 5531 1.135689 CACAAACCGGAGCAATGCTAC 60.136 52.381 9.46 7.82 39.88 3.58
2786 5532 1.164411 CACAAACCGGAGCAATGCTA 58.836 50.000 9.46 0.00 39.88 3.49
2787 5533 0.537143 TCACAAACCGGAGCAATGCT 60.537 50.000 7.79 7.79 43.88 3.79
2788 5534 0.387239 GTCACAAACCGGAGCAATGC 60.387 55.000 9.46 0.00 0.00 3.56
2789 5535 0.110238 CGTCACAAACCGGAGCAATG 60.110 55.000 9.46 1.48 0.00 2.82
2790 5536 0.250124 TCGTCACAAACCGGAGCAAT 60.250 50.000 9.46 0.00 0.00 3.56
2791 5537 1.144276 TCGTCACAAACCGGAGCAA 59.856 52.632 9.46 0.00 0.00 3.91
2794 5540 0.031585 TCAGTCGTCACAAACCGGAG 59.968 55.000 9.46 0.00 0.00 4.63
2796 5542 0.528901 TGTCAGTCGTCACAAACCGG 60.529 55.000 0.00 0.00 0.00 5.28
2806 5552 1.874345 GACCCGGTGATGTCAGTCGT 61.874 60.000 0.00 0.00 0.00 4.34
2811 5557 0.830023 TGACTGACCCGGTGATGTCA 60.830 55.000 10.34 10.34 39.08 3.58
2818 5564 3.782656 AAAATACTTGACTGACCCGGT 57.217 42.857 0.00 0.00 0.00 5.28
2834 5580 7.839680 ACTTGATTGACCCAACTAGAAAAAT 57.160 32.000 0.00 0.00 0.00 1.82
2852 5598 7.392673 ACAGATCTTGCAATCTTGTAACTTGAT 59.607 33.333 0.00 0.00 33.68 2.57
2892 6935 1.593006 CATGATAGCCGTTGAACGTCC 59.407 52.381 17.05 7.21 40.58 4.79
2895 6938 0.937304 CCCATGATAGCCGTTGAACG 59.063 55.000 11.30 11.30 42.11 3.95
2972 7016 2.366266 TGATGTCCTCGATGCATGATCA 59.634 45.455 2.46 0.00 0.00 2.92
2985 7029 7.562454 TTTTTAACTCGAACTTTGATGTCCT 57.438 32.000 0.00 0.00 0.00 3.85
2996 7040 7.190871 TGGAGAACAACATTTTTAACTCGAAC 58.809 34.615 0.00 0.00 0.00 3.95
3013 7057 1.146041 ACACGCTGCTTGGAGAACA 59.854 52.632 11.00 0.00 0.00 3.18
3046 7090 1.535860 GCGCGGCATAATTTGAACCAT 60.536 47.619 8.83 0.00 0.00 3.55
3062 7106 0.100682 TAGCTAACTCCTCAAGCGCG 59.899 55.000 0.00 0.00 41.19 6.86
3067 7111 4.705023 GGCCAATTTTAGCTAACTCCTCAA 59.295 41.667 5.45 0.00 0.00 3.02
3069 7113 3.312697 CGGCCAATTTTAGCTAACTCCTC 59.687 47.826 5.45 0.00 0.00 3.71
3070 7114 3.279434 CGGCCAATTTTAGCTAACTCCT 58.721 45.455 5.45 0.00 0.00 3.69
3071 7115 3.014623 ACGGCCAATTTTAGCTAACTCC 58.985 45.455 5.45 0.87 0.00 3.85
3117 7161 1.480954 CGGTACAATAGTGACCCAGCT 59.519 52.381 0.00 0.00 0.00 4.24
3155 7199 1.401552 GATAAATCGTGCAAGCAGGCA 59.598 47.619 9.69 0.00 42.53 4.75
3156 7200 1.268743 GGATAAATCGTGCAAGCAGGC 60.269 52.381 9.69 0.00 0.00 4.85
3157 7201 2.016318 TGGATAAATCGTGCAAGCAGG 58.984 47.619 8.34 8.34 0.00 4.85
3158 7202 3.688272 CTTGGATAAATCGTGCAAGCAG 58.312 45.455 0.00 0.00 0.00 4.24
3159 7203 2.159393 GCTTGGATAAATCGTGCAAGCA 60.159 45.455 21.85 0.00 43.18 3.91
3160 7204 2.159393 TGCTTGGATAAATCGTGCAAGC 60.159 45.455 20.57 20.57 43.57 4.01
3165 7209 4.637483 AATGGTGCTTGGATAAATCGTG 57.363 40.909 0.00 0.00 0.00 4.35
3166 7210 5.885912 ACTTAATGGTGCTTGGATAAATCGT 59.114 36.000 0.00 0.00 0.00 3.73
3174 7218 8.644374 AACTTTATAACTTAATGGTGCTTGGA 57.356 30.769 0.00 0.00 0.00 3.53
3177 7221 8.244113 GCAGAACTTTATAACTTAATGGTGCTT 58.756 33.333 0.00 0.00 0.00 3.91
3214 7261 9.669353 AATCGATGTATCATAGCAAATGTTTTC 57.331 29.630 0.00 0.00 0.00 2.29
3254 7303 4.142534 CGATGAAAATTGCACATCTCTGGT 60.143 41.667 11.22 0.00 38.43 4.00
3260 7309 6.264832 TGTATTCCGATGAAAATTGCACATC 58.735 36.000 4.56 4.56 37.59 3.06
3262 7311 5.635417 TGTATTCCGATGAAAATTGCACA 57.365 34.783 0.00 0.00 33.32 4.57
3263 7312 5.687285 GGATGTATTCCGATGAAAATTGCAC 59.313 40.000 0.00 0.00 33.93 4.57
3349 7439 2.618709 GTTTTGGGTTGACTCTGACTGG 59.381 50.000 0.00 0.00 0.00 4.00
3352 7442 7.923414 ATATTAGTTTTGGGTTGACTCTGAC 57.077 36.000 0.00 0.00 0.00 3.51
3353 7443 8.160765 TGAATATTAGTTTTGGGTTGACTCTGA 58.839 33.333 0.00 0.00 0.00 3.27
3357 7447 8.164070 ACTCTGAATATTAGTTTTGGGTTGACT 58.836 33.333 0.00 0.00 0.00 3.41
3358 7448 8.336801 ACTCTGAATATTAGTTTTGGGTTGAC 57.663 34.615 0.00 0.00 0.00 3.18
3359 7449 8.160765 TGACTCTGAATATTAGTTTTGGGTTGA 58.839 33.333 0.00 0.00 0.00 3.18
3360 7450 8.335532 TGACTCTGAATATTAGTTTTGGGTTG 57.664 34.615 0.00 0.00 0.00 3.77
3361 7451 8.793592 GTTGACTCTGAATATTAGTTTTGGGTT 58.206 33.333 0.00 0.00 0.00 4.11
3362 7452 7.393515 GGTTGACTCTGAATATTAGTTTTGGGT 59.606 37.037 0.00 0.00 0.00 4.51
3363 7453 7.148069 GGGTTGACTCTGAATATTAGTTTTGGG 60.148 40.741 0.00 0.00 0.00 4.12
3364 7454 7.393234 TGGGTTGACTCTGAATATTAGTTTTGG 59.607 37.037 0.00 0.00 0.00 3.28
3365 7455 8.335532 TGGGTTGACTCTGAATATTAGTTTTG 57.664 34.615 0.00 0.00 0.00 2.44
3366 7456 8.934023 TTGGGTTGACTCTGAATATTAGTTTT 57.066 30.769 0.00 0.00 0.00 2.43
3367 7457 8.934023 TTTGGGTTGACTCTGAATATTAGTTT 57.066 30.769 0.00 0.00 0.00 2.66
3368 7458 8.793592 GTTTTGGGTTGACTCTGAATATTAGTT 58.206 33.333 0.00 0.00 0.00 2.24
3369 7459 8.164070 AGTTTTGGGTTGACTCTGAATATTAGT 58.836 33.333 0.00 0.00 0.00 2.24
3370 7460 8.567285 AGTTTTGGGTTGACTCTGAATATTAG 57.433 34.615 0.00 0.00 0.00 1.73
3372 7462 8.934023 TTAGTTTTGGGTTGACTCTGAATATT 57.066 30.769 0.00 0.00 0.00 1.28
3375 7465 9.533831 AATATTAGTTTTGGGTTGACTCTGAAT 57.466 29.630 0.00 0.00 0.00 2.57
3376 7466 8.934023 AATATTAGTTTTGGGTTGACTCTGAA 57.066 30.769 0.00 0.00 0.00 3.02
3495 7585 8.832735 ACCTGATGAGGGTTAATAAAGAGTTTA 58.167 33.333 2.36 0.00 44.84 2.01
3505 7595 4.540099 TGGAAAGACCTGATGAGGGTTAAT 59.460 41.667 2.36 0.00 44.84 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.