Multiple sequence alignment - TraesCS5D01G403300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G403300 chr5D 100.000 4343 0 0 1 4343 469176701 469181043 0.000000e+00 8021.0
1 TraesCS5D01G403300 chr5A 90.467 1007 64 16 2925 3919 589298344 589299330 0.000000e+00 1299.0
2 TraesCS5D01G403300 chr5A 88.855 987 48 27 244 1205 589294512 589295461 0.000000e+00 1157.0
3 TraesCS5D01G403300 chr5A 85.096 1040 95 30 1252 2239 589295540 589296571 0.000000e+00 1007.0
4 TraesCS5D01G403300 chr5A 86.792 318 27 10 3956 4258 589299451 589299768 1.500000e-89 340.0
5 TraesCS5D01G403300 chr5A 89.879 247 20 3 1 247 589294243 589294484 3.260000e-81 313.0
6 TraesCS5D01G403300 chr5A 88.235 187 20 2 2557 2743 589297361 589297545 5.650000e-54 222.0
7 TraesCS5D01G403300 chr5A 89.855 138 12 2 58 195 589294158 589294293 4.460000e-40 176.0
8 TraesCS5D01G403300 chr5B 88.153 996 51 27 244 1201 575972419 575973385 0.000000e+00 1123.0
9 TraesCS5D01G403300 chr5B 81.341 1029 129 36 1280 2262 575973642 575974653 0.000000e+00 778.0
10 TraesCS5D01G403300 chr5B 90.678 472 40 4 3099 3566 576087236 576087707 3.690000e-175 625.0
11 TraesCS5D01G403300 chr5B 87.245 392 41 6 3870 4254 576088354 576088743 5.160000e-119 438.0
12 TraesCS5D01G403300 chr5B 90.991 222 15 3 26 247 575972175 575972391 1.180000e-75 294.0
13 TraesCS5D01G403300 chr5B 92.683 123 3 1 3723 3845 576087794 576087910 5.770000e-39 172.0
14 TraesCS5D01G403300 chr5B 86.508 126 12 3 2972 3092 575975908 575976033 2.720000e-27 134.0
15 TraesCS5D01G403300 chr5B 82.308 130 16 4 3707 3832 575978917 575979043 5.940000e-19 106.0
16 TraesCS5D01G403300 chr5B 88.235 68 8 0 4270 4337 119410176 119410243 1.000000e-11 82.4
17 TraesCS5D01G403300 chr5B 100.000 30 0 0 1 30 575971975 575972004 6.070000e-04 56.5
18 TraesCS5D01G403300 chr6A 86.364 88 11 1 2273 2360 79261081 79261167 1.290000e-15 95.3
19 TraesCS5D01G403300 chr7B 88.889 72 8 0 4272 4343 221097052 221097123 5.980000e-14 89.8
20 TraesCS5D01G403300 chr1B 90.909 66 6 0 4270 4335 308014291 308014226 5.980000e-14 89.8
21 TraesCS5D01G403300 chr1B 97.222 36 0 1 2286 2321 499202343 499202377 4.690000e-05 60.2
22 TraesCS5D01G403300 chr6B 89.706 68 7 0 4270 4337 657605484 657605551 2.150000e-13 87.9
23 TraesCS5D01G403300 chr4D 87.838 74 9 0 4270 4343 420944974 420945047 2.150000e-13 87.9
24 TraesCS5D01G403300 chr6D 87.500 72 9 0 4272 4343 270694383 270694312 2.780000e-12 84.2
25 TraesCS5D01G403300 chr4B 87.500 72 9 0 4272 4343 659619642 659619571 2.780000e-12 84.2
26 TraesCS5D01G403300 chr2B 87.500 72 9 0 4272 4343 738336770 738336699 2.780000e-12 84.2
27 TraesCS5D01G403300 chr3D 86.486 74 10 0 4270 4343 349970937 349970864 1.000000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G403300 chr5D 469176701 469181043 4342 False 8021.000000 8021 100.000000 1 4343 1 chr5D.!!$F1 4342
1 TraesCS5D01G403300 chr5A 589294158 589299768 5610 False 644.857143 1299 88.454143 1 4258 7 chr5A.!!$F1 4257
2 TraesCS5D01G403300 chr5B 575971975 575979043 7068 False 415.250000 1123 88.216833 1 3832 6 chr5B.!!$F2 3831
3 TraesCS5D01G403300 chr5B 576087236 576088743 1507 False 411.666667 625 90.202000 3099 4254 3 chr5B.!!$F3 1155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 590 0.101759 CCATGCATGTAGCCAGCAAC 59.898 55.000 24.58 0.00 44.83 4.17 F
1210 1702 0.024238 CCACGTACGTACTCTCGACG 59.976 60.000 22.34 13.17 45.75 5.12 F
1211 1703 0.582599 CACGTACGTACTCTCGACGC 60.583 60.000 22.34 0.00 44.14 5.19 F
2043 2666 1.344114 TGCTGTCATGCCGCATAGATA 59.656 47.619 5.31 4.17 0.00 1.98 F
2294 2928 0.025513 GCGCAATTGAGCACTAGACG 59.974 55.000 26.57 10.15 40.65 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2909 0.025513 CGTCTAGTGCTCAATTGCGC 59.974 55.0 13.47 13.47 43.09 6.09 R
2289 2923 0.036765 AGGCGATGGCAAAACGTCTA 60.037 50.0 15.07 0.00 40.11 2.59 R
2292 2926 0.036765 TCTAGGCGATGGCAAAACGT 60.037 50.0 1.01 0.00 42.47 3.99 R
3127 5165 0.187117 TTCAGAAATGTGGGTGGGCA 59.813 50.0 0.00 0.00 0.00 5.36 R
4001 8939 0.251297 CACTCCACCCTGAATGCCAA 60.251 55.0 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 375 2.929903 GCAAATCGGCACAAGGGCA 61.930 57.895 0.00 0.00 43.60 5.36
117 378 1.805428 AAATCGGCACAAGGGCACAC 61.805 55.000 0.00 0.00 43.60 3.82
148 409 3.370421 CCACATGCATTACAGGACACCTA 60.370 47.826 0.00 0.00 33.22 3.08
209 470 9.817809 AATCAGAGCATTCGAACTAATTAGTAA 57.182 29.630 18.31 9.81 34.99 2.24
268 560 4.164221 ACCTCAATTACCTATCACCACCAG 59.836 45.833 0.00 0.00 0.00 4.00
289 581 4.337274 CAGCAAGAATCTTCCATGCATGTA 59.663 41.667 24.58 6.94 40.77 2.29
298 590 0.101759 CCATGCATGTAGCCAGCAAC 59.898 55.000 24.58 0.00 44.83 4.17
316 608 0.664224 ACCCAGTAAAACCAAACGCG 59.336 50.000 3.53 3.53 0.00 6.01
380 673 6.644347 CAGTACAGATTCTACCCAAAGTCAT 58.356 40.000 0.00 0.00 0.00 3.06
403 696 0.250124 CCGAGCTTAACACCACCACA 60.250 55.000 0.00 0.00 0.00 4.17
404 697 0.865769 CGAGCTTAACACCACCACAC 59.134 55.000 0.00 0.00 0.00 3.82
406 699 0.843984 AGCTTAACACCACCACACCT 59.156 50.000 0.00 0.00 0.00 4.00
407 700 2.038033 GAGCTTAACACCACCACACCTA 59.962 50.000 0.00 0.00 0.00 3.08
408 701 2.440253 AGCTTAACACCACCACACCTAA 59.560 45.455 0.00 0.00 0.00 2.69
410 703 3.824443 GCTTAACACCACCACACCTAATT 59.176 43.478 0.00 0.00 0.00 1.40
416 710 6.129414 ACACCACCACACCTAATTATAACA 57.871 37.500 0.00 0.00 0.00 2.41
447 741 0.847373 TAAGGGACTGTTTGGGCACA 59.153 50.000 0.00 0.00 40.86 4.57
450 744 2.551912 GGACTGTTTGGGCACACCG 61.552 63.158 0.00 0.00 44.64 4.94
706 1024 2.044352 CTAGGGTTTTGGGGCCGG 60.044 66.667 0.00 0.00 0.00 6.13
750 1076 3.716006 CGCAGCAGGGTGTTGTCG 61.716 66.667 0.07 0.00 30.85 4.35
751 1077 2.591715 GCAGCAGGGTGTTGTCGT 60.592 61.111 0.07 0.00 30.85 4.34
752 1078 2.607892 GCAGCAGGGTGTTGTCGTC 61.608 63.158 0.07 0.00 30.85 4.20
795 1121 2.266055 GAGGCGGAGTGAAGTGGG 59.734 66.667 0.00 0.00 0.00 4.61
799 1125 3.322466 CGGAGTGAAGTGGGGCCT 61.322 66.667 0.84 0.00 0.00 5.19
950 1279 2.094130 GGTGTACTGTACTGCCTTCTCC 60.094 54.545 17.98 5.34 0.00 3.71
951 1280 2.826725 GTGTACTGTACTGCCTTCTCCT 59.173 50.000 17.98 0.00 0.00 3.69
952 1281 3.090037 TGTACTGTACTGCCTTCTCCTC 58.910 50.000 17.98 0.00 0.00 3.71
953 1282 2.614134 ACTGTACTGCCTTCTCCTCT 57.386 50.000 0.00 0.00 0.00 3.69
954 1283 2.896039 ACTGTACTGCCTTCTCCTCTT 58.104 47.619 0.00 0.00 0.00 2.85
971 1303 3.006967 CCTCTTTCTCGGTTTCCTCTTCA 59.993 47.826 0.00 0.00 0.00 3.02
973 1305 2.457366 TTCTCGGTTTCCTCTTCAGC 57.543 50.000 0.00 0.00 0.00 4.26
996 1328 3.964411 TCTCTCCTTGGTTCAGATCGTA 58.036 45.455 0.00 0.00 0.00 3.43
1205 1697 1.400846 CATGCTCCACGTACGTACTCT 59.599 52.381 22.34 5.60 0.00 3.24
1206 1698 1.081892 TGCTCCACGTACGTACTCTC 58.918 55.000 22.34 9.89 0.00 3.20
1207 1699 0.026027 GCTCCACGTACGTACTCTCG 59.974 60.000 22.34 12.40 0.00 4.04
1208 1700 1.633561 CTCCACGTACGTACTCTCGA 58.366 55.000 22.34 11.59 34.70 4.04
1209 1701 1.322936 CTCCACGTACGTACTCTCGAC 59.677 57.143 22.34 0.00 34.70 4.20
1210 1702 0.024238 CCACGTACGTACTCTCGACG 59.976 60.000 22.34 13.17 45.75 5.12
1211 1703 0.582599 CACGTACGTACTCTCGACGC 60.583 60.000 22.34 0.00 44.14 5.19
1212 1704 1.364653 CGTACGTACTCTCGACGCG 60.365 63.158 22.55 3.53 44.14 6.01
1276 1811 6.398918 CATCAATCTAGTTTATCGGTAGGGG 58.601 44.000 0.00 0.00 0.00 4.79
1306 1852 1.594331 GGTAATTGGATCTGGGCGAC 58.406 55.000 0.00 0.00 0.00 5.19
1329 1883 7.525194 CGACCTAGTGCCTTAGTAGTAGATCTA 60.525 44.444 0.00 0.00 34.49 1.98
1347 1901 9.381033 GTAGATCTATATGCTCCTTCGTAGTTA 57.619 37.037 5.57 0.00 0.00 2.24
1348 1902 8.865420 AGATCTATATGCTCCTTCGTAGTTAA 57.135 34.615 0.00 0.00 0.00 2.01
1350 1904 8.638629 ATCTATATGCTCCTTCGTAGTTAACT 57.361 34.615 13.68 13.68 0.00 2.24
1360 1914 5.980116 CCTTCGTAGTTAACTGAGATGATGG 59.020 44.000 18.56 15.06 0.00 3.51
1375 1929 6.090483 AGATGATGGGTTCGTCTTAGTATG 57.910 41.667 0.00 0.00 46.52 2.39
1393 1950 2.052782 TGTCCGATGCTGCTAGACTA 57.947 50.000 0.00 0.00 0.00 2.59
1397 1954 4.004314 GTCCGATGCTGCTAGACTATCTA 58.996 47.826 0.00 0.00 0.00 1.98
1580 2140 5.101628 TGTGAGTTTTCTTCACATTTGTGC 58.898 37.500 5.81 0.00 45.25 4.57
1606 2174 8.273557 CGGTTTATGTGTTAATCTAGGATTTCG 58.726 37.037 0.00 0.00 0.00 3.46
1611 2179 6.278363 TGTGTTAATCTAGGATTTCGGCTAC 58.722 40.000 0.00 0.00 0.00 3.58
1612 2180 6.097839 TGTGTTAATCTAGGATTTCGGCTACT 59.902 38.462 0.00 0.00 0.00 2.57
1615 2183 8.304596 TGTTAATCTAGGATTTCGGCTACTATG 58.695 37.037 0.00 0.00 0.00 2.23
1662 2246 3.237268 ACCTTTGCAGTGGGTCATTTA 57.763 42.857 11.05 0.00 0.00 1.40
1716 2302 2.196295 TTGCCGTGTACTTTTTGTGC 57.804 45.000 0.00 0.00 0.00 4.57
1725 2311 3.194542 TGTACTTTTTGTGCTGCCACTTT 59.805 39.130 0.00 0.00 42.54 2.66
1754 2344 6.033341 GGAATTATGCAATTAAACAGCGTCA 58.967 36.000 0.00 0.00 34.44 4.35
1772 2362 3.307480 CGTCATAGTTTCCCCCTCTTTGT 60.307 47.826 0.00 0.00 0.00 2.83
1774 2364 4.019231 GTCATAGTTTCCCCCTCTTTGTCT 60.019 45.833 0.00 0.00 0.00 3.41
1784 2374 2.480419 CCCTCTTTGTCTGTTTGCTACG 59.520 50.000 0.00 0.00 0.00 3.51
1835 2444 6.762702 ATATGTGTTGCATCATTGAGACAA 57.237 33.333 0.00 0.00 38.94 3.18
1862 2471 5.006386 AGGATTTGTGGCTTTCTTCTGTAG 58.994 41.667 0.00 0.00 0.00 2.74
1872 2481 5.934625 GGCTTTCTTCTGTAGTTCTTGATGA 59.065 40.000 0.00 0.00 0.00 2.92
1902 2518 5.244626 AGTCAGAATGCTGCCTTTTGTTATT 59.755 36.000 0.00 0.00 42.01 1.40
1903 2519 6.434028 AGTCAGAATGCTGCCTTTTGTTATTA 59.566 34.615 0.00 0.00 42.01 0.98
1974 2596 7.657761 TGAACTTTTGTCCTTGCTGTTTTTAAA 59.342 29.630 0.00 0.00 0.00 1.52
2043 2666 1.344114 TGCTGTCATGCCGCATAGATA 59.656 47.619 5.31 4.17 0.00 1.98
2061 2684 9.497030 GCATAGATATTCTAACTAGACATGTCG 57.503 37.037 19.85 9.54 31.96 4.35
2066 2689 5.769484 TTCTAACTAGACATGTCGATCCC 57.231 43.478 19.85 0.00 34.09 3.85
2081 2704 2.745152 CGATCCCGGGAGCTAAAAACAT 60.745 50.000 34.42 11.65 0.00 2.71
2235 2862 7.423199 CCTACGGGAAGCCTTTTATTTTATTC 58.577 38.462 0.00 0.00 33.58 1.75
2239 2873 8.683615 ACGGGAAGCCTTTTATTTTATTCTTAG 58.316 33.333 0.00 0.00 0.00 2.18
2240 2874 8.135529 CGGGAAGCCTTTTATTTTATTCTTAGG 58.864 37.037 0.00 0.00 0.00 2.69
2264 2898 9.281371 AGGGTAAAGTAAATAAGTGTTTCTGTC 57.719 33.333 0.00 0.00 0.00 3.51
2265 2899 9.059260 GGGTAAAGTAAATAAGTGTTTCTGTCA 57.941 33.333 0.00 0.00 0.00 3.58
2276 2910 9.804758 ATAAGTGTTTCTGTCATAGTAGTAAGC 57.195 33.333 0.00 0.00 0.00 3.09
2277 2911 6.323266 AGTGTTTCTGTCATAGTAGTAAGCG 58.677 40.000 0.00 0.00 0.00 4.68
2278 2912 5.004535 GTGTTTCTGTCATAGTAGTAAGCGC 59.995 44.000 0.00 0.00 0.00 5.92
2279 2913 4.976224 TTCTGTCATAGTAGTAAGCGCA 57.024 40.909 11.47 0.00 0.00 6.09
2280 2914 4.976224 TCTGTCATAGTAGTAAGCGCAA 57.024 40.909 11.47 0.00 0.00 4.85
2281 2915 5.515797 TCTGTCATAGTAGTAAGCGCAAT 57.484 39.130 11.47 0.00 0.00 3.56
2282 2916 5.902681 TCTGTCATAGTAGTAAGCGCAATT 58.097 37.500 11.47 0.00 0.00 2.32
2283 2917 5.748630 TCTGTCATAGTAGTAAGCGCAATTG 59.251 40.000 11.47 0.00 0.00 2.32
2284 2918 5.656480 TGTCATAGTAGTAAGCGCAATTGA 58.344 37.500 11.47 0.00 0.00 2.57
2285 2919 5.748630 TGTCATAGTAGTAAGCGCAATTGAG 59.251 40.000 11.47 7.33 0.00 3.02
2286 2920 4.745125 TCATAGTAGTAAGCGCAATTGAGC 59.255 41.667 24.59 24.59 41.28 4.26
2287 2921 2.972625 AGTAGTAAGCGCAATTGAGCA 58.027 42.857 31.44 12.93 43.47 4.26
2288 2922 2.673368 AGTAGTAAGCGCAATTGAGCAC 59.327 45.455 31.44 22.55 43.47 4.40
2289 2923 1.813513 AGTAAGCGCAATTGAGCACT 58.186 45.000 31.44 24.17 43.47 4.40
2290 2924 2.972625 AGTAAGCGCAATTGAGCACTA 58.027 42.857 31.44 20.46 43.47 2.74
2291 2925 2.932614 AGTAAGCGCAATTGAGCACTAG 59.067 45.455 31.44 5.37 43.47 2.57
2292 2926 2.099141 AAGCGCAATTGAGCACTAGA 57.901 45.000 31.44 0.00 43.47 2.43
2293 2927 1.363744 AGCGCAATTGAGCACTAGAC 58.636 50.000 31.44 4.94 43.47 2.59
2294 2928 0.025513 GCGCAATTGAGCACTAGACG 59.974 55.000 26.57 10.15 40.65 4.18
2295 2929 1.350193 CGCAATTGAGCACTAGACGT 58.650 50.000 10.34 0.00 0.00 4.34
2296 2930 1.726791 CGCAATTGAGCACTAGACGTT 59.273 47.619 10.34 0.00 0.00 3.99
2297 2931 2.157668 CGCAATTGAGCACTAGACGTTT 59.842 45.455 10.34 0.00 0.00 3.60
2298 2932 3.363970 CGCAATTGAGCACTAGACGTTTT 60.364 43.478 10.34 0.00 0.00 2.43
2299 2933 3.908382 GCAATTGAGCACTAGACGTTTTG 59.092 43.478 10.34 0.00 0.00 2.44
2300 2934 3.813529 ATTGAGCACTAGACGTTTTGC 57.186 42.857 0.00 0.00 35.08 3.68
2301 2935 1.508632 TGAGCACTAGACGTTTTGCC 58.491 50.000 0.00 2.35 35.47 4.52
2302 2936 1.202592 TGAGCACTAGACGTTTTGCCA 60.203 47.619 0.00 4.33 35.47 4.92
2303 2937 2.076863 GAGCACTAGACGTTTTGCCAT 58.923 47.619 0.00 0.00 35.47 4.40
2304 2938 2.076863 AGCACTAGACGTTTTGCCATC 58.923 47.619 0.00 0.00 35.47 3.51
2305 2939 1.201921 GCACTAGACGTTTTGCCATCG 60.202 52.381 0.00 0.00 0.00 3.84
2306 2940 1.076332 ACTAGACGTTTTGCCATCGC 58.924 50.000 0.00 0.00 0.00 4.58
2307 2941 0.373716 CTAGACGTTTTGCCATCGCC 59.626 55.000 0.00 0.00 0.00 5.54
2308 2942 0.036765 TAGACGTTTTGCCATCGCCT 60.037 50.000 0.00 0.00 0.00 5.52
2309 2943 0.036765 AGACGTTTTGCCATCGCCTA 60.037 50.000 0.00 0.00 0.00 3.93
2310 2944 0.373716 GACGTTTTGCCATCGCCTAG 59.626 55.000 0.00 0.00 0.00 3.02
2311 2945 0.036765 ACGTTTTGCCATCGCCTAGA 60.037 50.000 0.00 0.00 0.00 2.43
2312 2946 0.652592 CGTTTTGCCATCGCCTAGAG 59.347 55.000 0.00 0.00 0.00 2.43
2313 2947 0.378610 GTTTTGCCATCGCCTAGAGC 59.621 55.000 0.00 0.00 38.52 4.09
2314 2948 0.748005 TTTTGCCATCGCCTAGAGCC 60.748 55.000 0.00 0.00 38.78 4.70
2315 2949 1.626356 TTTGCCATCGCCTAGAGCCT 61.626 55.000 0.00 0.00 38.78 4.58
2316 2950 0.759060 TTGCCATCGCCTAGAGCCTA 60.759 55.000 0.00 0.00 38.78 3.93
2317 2951 1.181741 TGCCATCGCCTAGAGCCTAG 61.182 60.000 0.00 3.06 38.78 3.02
2318 2952 1.882989 GCCATCGCCTAGAGCCTAGG 61.883 65.000 18.85 18.85 38.78 3.02
2324 2958 3.215671 CCTAGAGCCTAGGCACACT 57.784 57.895 34.70 28.39 44.88 3.55
2325 2959 1.490574 CCTAGAGCCTAGGCACACTT 58.509 55.000 34.70 14.76 44.88 3.16
2326 2960 2.667470 CCTAGAGCCTAGGCACACTTA 58.333 52.381 34.70 16.08 44.88 2.24
2327 2961 3.031736 CCTAGAGCCTAGGCACACTTAA 58.968 50.000 34.70 15.07 44.88 1.85
2328 2962 3.068873 CCTAGAGCCTAGGCACACTTAAG 59.931 52.174 34.70 21.79 44.88 1.85
2329 2963 1.208293 AGAGCCTAGGCACACTTAAGC 59.792 52.381 34.70 11.99 44.88 3.09
2330 2964 0.984230 AGCCTAGGCACACTTAAGCA 59.016 50.000 34.70 0.00 44.88 3.91
2331 2965 1.087501 GCCTAGGCACACTTAAGCAC 58.912 55.000 29.33 0.00 41.49 4.40
2332 2966 1.739067 CCTAGGCACACTTAAGCACC 58.261 55.000 1.29 0.00 0.00 5.01
2333 2967 1.679032 CCTAGGCACACTTAAGCACCC 60.679 57.143 1.29 0.00 0.00 4.61
2334 2968 1.279271 CTAGGCACACTTAAGCACCCT 59.721 52.381 1.29 6.14 0.00 4.34
2335 2969 0.036875 AGGCACACTTAAGCACCCTC 59.963 55.000 1.29 0.00 0.00 4.30
2336 2970 0.960861 GGCACACTTAAGCACCCTCC 60.961 60.000 1.29 0.00 0.00 4.30
2337 2971 0.036875 GCACACTTAAGCACCCTCCT 59.963 55.000 1.29 0.00 0.00 3.69
2338 2972 1.278127 GCACACTTAAGCACCCTCCTA 59.722 52.381 1.29 0.00 0.00 2.94
2339 2973 2.678190 GCACACTTAAGCACCCTCCTAG 60.678 54.545 1.29 0.00 0.00 3.02
2340 2974 2.093447 CACACTTAAGCACCCTCCTAGG 60.093 54.545 0.82 0.82 34.30 3.02
2341 2975 1.134371 CACTTAAGCACCCTCCTAGGC 60.134 57.143 2.96 0.00 32.73 3.93
2342 2976 1.204146 CTTAAGCACCCTCCTAGGCA 58.796 55.000 2.96 0.00 32.73 4.75
2343 2977 0.909623 TTAAGCACCCTCCTAGGCAC 59.090 55.000 2.96 0.00 32.73 5.01
2344 2978 1.327690 TAAGCACCCTCCTAGGCACG 61.328 60.000 2.96 0.00 32.73 5.34
2345 2979 4.840005 GCACCCTCCTAGGCACGC 62.840 72.222 2.96 0.00 32.73 5.34
2346 2980 4.162690 CACCCTCCTAGGCACGCC 62.163 72.222 2.96 0.00 32.73 5.68
2348 2982 3.083997 CCCTCCTAGGCACGCCTT 61.084 66.667 17.25 0.40 45.70 4.35
2349 2983 2.670148 CCCTCCTAGGCACGCCTTT 61.670 63.158 17.25 0.00 45.70 3.11
2350 2984 1.299976 CCTCCTAGGCACGCCTTTT 59.700 57.895 17.25 0.00 45.70 2.27
2351 2985 0.322546 CCTCCTAGGCACGCCTTTTT 60.323 55.000 17.25 0.00 45.70 1.94
2376 3010 3.832490 ACTATGGTGTCTGTGCTGACTTA 59.168 43.478 9.88 0.00 37.79 2.24
2384 3018 4.160252 TGTCTGTGCTGACTTATGCTCATA 59.840 41.667 9.88 0.00 37.79 2.15
2389 3023 4.274214 GTGCTGACTTATGCTCATATTGCA 59.726 41.667 3.04 3.04 44.95 4.08
2447 3081 4.032703 CAGTCCTTTGAACTGTTTGTGG 57.967 45.455 0.00 0.00 39.42 4.17
2454 3520 5.163864 CCTTTGAACTGTTTGTGGAAAAAGC 60.164 40.000 0.00 0.00 0.00 3.51
2456 3522 5.146010 TGAACTGTTTGTGGAAAAAGCTT 57.854 34.783 0.00 0.00 0.00 3.74
2457 3523 4.928615 TGAACTGTTTGTGGAAAAAGCTTG 59.071 37.500 0.00 0.00 0.00 4.01
2483 3549 5.061721 AGGTTGTTTACTTTCTCATGGGT 57.938 39.130 0.00 0.00 0.00 4.51
2485 3551 5.301805 AGGTTGTTTACTTTCTCATGGGTTG 59.698 40.000 0.00 0.00 0.00 3.77
2486 3552 4.846779 TGTTTACTTTCTCATGGGTTGC 57.153 40.909 0.00 0.00 0.00 4.17
2487 3553 3.252215 TGTTTACTTTCTCATGGGTTGCG 59.748 43.478 0.00 0.00 0.00 4.85
2489 3555 1.523758 ACTTTCTCATGGGTTGCGAC 58.476 50.000 0.00 0.00 0.00 5.19
2490 3556 0.804989 CTTTCTCATGGGTTGCGACC 59.195 55.000 15.51 15.51 45.75 4.79
2492 3558 0.400213 TTCTCATGGGTTGCGACCTT 59.600 50.000 22.72 8.13 45.75 3.50
2498 3569 0.035739 TGGGTTGCGACCTTTAGACC 59.964 55.000 22.72 4.76 45.75 3.85
2501 3572 1.347320 GTTGCGACCTTTAGACCTCG 58.653 55.000 0.00 0.00 0.00 4.63
2507 3578 2.291190 CGACCTTTAGACCTCGAGATCC 59.709 54.545 15.71 2.12 0.00 3.36
2515 3586 2.167487 AGACCTCGAGATCCAGCTTTTC 59.833 50.000 15.71 0.00 0.00 2.29
2532 3605 6.203338 CAGCTTTTCTTTTGTTTGGTATGCAT 59.797 34.615 3.79 3.79 0.00 3.96
2538 3611 7.099266 TCTTTTGTTTGGTATGCATATGGAG 57.901 36.000 10.16 0.00 0.00 3.86
2548 3630 3.870538 TGCATATGGAGGCTTGATTCT 57.129 42.857 4.56 0.00 32.18 2.40
2554 3636 3.726557 TGGAGGCTTGATTCTGTCATT 57.273 42.857 0.00 0.00 36.54 2.57
2563 3767 7.724506 AGGCTTGATTCTGTCATTGATATGATT 59.275 33.333 0.00 0.00 42.49 2.57
2633 3837 4.024387 TGTTACGAAGAAGGCAAATCACAC 60.024 41.667 0.00 0.00 0.00 3.82
2678 3882 8.821686 TTTATCAGAGCAAATTTTAGGGATGA 57.178 30.769 0.00 0.00 0.00 2.92
2687 3891 7.820872 AGCAAATTTTAGGGATGATTTGTCTTG 59.179 33.333 8.79 0.00 40.08 3.02
2722 3927 4.085357 ACAGTTATCAGCAACCTGTTCA 57.915 40.909 0.00 0.00 40.09 3.18
2724 3929 4.697352 ACAGTTATCAGCAACCTGTTCATC 59.303 41.667 0.00 0.00 40.09 2.92
2725 3930 4.095483 CAGTTATCAGCAACCTGTTCATCC 59.905 45.833 0.00 0.00 40.09 3.51
2738 3943 2.093021 TGTTCATCCCAAGCATCGATCA 60.093 45.455 0.00 0.00 0.00 2.92
2743 3948 3.003394 TCCCAAGCATCGATCACATTT 57.997 42.857 0.00 0.00 0.00 2.32
2745 3950 2.684374 CCCAAGCATCGATCACATTTCA 59.316 45.455 0.00 0.00 0.00 2.69
2746 3951 3.317149 CCCAAGCATCGATCACATTTCAT 59.683 43.478 0.00 0.00 0.00 2.57
2750 3955 3.750130 AGCATCGATCACATTTCATAGCC 59.250 43.478 0.00 0.00 0.00 3.93
2751 3956 3.499537 GCATCGATCACATTTCATAGCCA 59.500 43.478 0.00 0.00 0.00 4.75
2752 3957 4.378149 GCATCGATCACATTTCATAGCCAG 60.378 45.833 0.00 0.00 0.00 4.85
2753 3958 3.732212 TCGATCACATTTCATAGCCAGG 58.268 45.455 0.00 0.00 0.00 4.45
2772 4798 3.317711 CAGGTTGCATTACCAGAACAACA 59.682 43.478 10.18 0.00 41.80 3.33
2812 4842 2.428171 ACATCCACATACCATGCTTTGC 59.572 45.455 0.00 0.00 0.00 3.68
2813 4843 2.212812 TCCACATACCATGCTTTGCA 57.787 45.000 0.00 0.00 44.86 4.08
2814 4844 2.523245 TCCACATACCATGCTTTGCAA 58.477 42.857 0.00 0.00 43.62 4.08
2815 4845 3.098377 TCCACATACCATGCTTTGCAAT 58.902 40.909 0.00 0.00 43.62 3.56
2816 4846 3.514706 TCCACATACCATGCTTTGCAATT 59.485 39.130 0.00 0.00 43.62 2.32
2817 4847 3.866910 CCACATACCATGCTTTGCAATTC 59.133 43.478 0.00 0.00 43.62 2.17
2818 4848 4.382254 CCACATACCATGCTTTGCAATTCT 60.382 41.667 0.00 0.00 43.62 2.40
2819 4849 4.802039 CACATACCATGCTTTGCAATTCTC 59.198 41.667 0.00 0.00 43.62 2.87
2820 4850 4.463539 ACATACCATGCTTTGCAATTCTCA 59.536 37.500 0.00 0.00 43.62 3.27
2821 4851 5.047164 ACATACCATGCTTTGCAATTCTCAA 60.047 36.000 0.00 0.00 43.62 3.02
2822 4852 4.339872 ACCATGCTTTGCAATTCTCAAA 57.660 36.364 0.00 3.30 43.62 2.69
2823 4853 4.706035 ACCATGCTTTGCAATTCTCAAAA 58.294 34.783 0.00 0.00 43.62 2.44
2824 4854 5.310451 ACCATGCTTTGCAATTCTCAAAAT 58.690 33.333 0.00 0.00 43.62 1.82
2825 4855 6.465948 ACCATGCTTTGCAATTCTCAAAATA 58.534 32.000 0.00 0.00 43.62 1.40
2826 4856 6.935771 ACCATGCTTTGCAATTCTCAAAATAA 59.064 30.769 0.00 0.00 43.62 1.40
2827 4857 7.444792 ACCATGCTTTGCAATTCTCAAAATAAA 59.555 29.630 0.00 0.00 43.62 1.40
2828 4858 8.291032 CCATGCTTTGCAATTCTCAAAATAAAA 58.709 29.630 0.00 0.00 43.62 1.52
2829 4859 9.834628 CATGCTTTGCAATTCTCAAAATAAAAT 57.165 25.926 0.00 0.00 43.62 1.82
2860 4890 4.213270 TCATGCTTCGTCTACAAAAACAGG 59.787 41.667 0.00 0.00 0.00 4.00
2861 4891 3.799366 TGCTTCGTCTACAAAAACAGGA 58.201 40.909 0.00 0.00 0.00 3.86
2873 4903 9.823647 TCTACAAAAACAGGATTCTGATATCTC 57.176 33.333 8.39 0.00 43.49 2.75
2874 4904 9.605275 CTACAAAAACAGGATTCTGATATCTCA 57.395 33.333 8.39 0.00 43.49 3.27
2908 4938 8.954950 ATGCTATGTATAATATCACTGCTTCC 57.045 34.615 0.00 0.00 0.00 3.46
2909 4939 8.138928 TGCTATGTATAATATCACTGCTTCCT 57.861 34.615 0.00 0.00 0.00 3.36
2910 4940 9.255029 TGCTATGTATAATATCACTGCTTCCTA 57.745 33.333 0.00 0.00 0.00 2.94
2911 4941 9.522804 GCTATGTATAATATCACTGCTTCCTAC 57.477 37.037 0.00 0.00 0.00 3.18
2918 4948 3.857157 TCACTGCTTCCTACTTTTGGT 57.143 42.857 0.00 0.00 0.00 3.67
2920 4950 3.135712 TCACTGCTTCCTACTTTTGGTCA 59.864 43.478 0.00 0.00 0.00 4.02
2922 4952 4.154918 CACTGCTTCCTACTTTTGGTCATC 59.845 45.833 0.00 0.00 0.00 2.92
2936 4967 5.449297 TTGGTCATCCATTTCCTGATGTA 57.551 39.130 0.00 0.00 43.91 2.29
2937 4968 5.449297 TGGTCATCCATTTCCTGATGTAA 57.551 39.130 0.00 0.00 39.47 2.41
3064 5102 0.450583 CACAAAGCGCTGATCTGCAT 59.549 50.000 22.44 9.09 0.00 3.96
3092 5130 2.093783 CGCCGTATGAAGTTTCCTGTTC 59.906 50.000 0.00 0.00 0.00 3.18
3109 5147 2.223923 TGTTCAATTTTTGGTGCCTCGG 60.224 45.455 0.00 0.00 0.00 4.63
3113 5151 1.250840 ATTTTTGGTGCCTCGGAGCC 61.251 55.000 0.00 0.00 0.00 4.70
3157 5195 5.005740 CCACATTTCTGAATCCTTGAGTCA 58.994 41.667 0.00 0.00 34.24 3.41
3162 5200 2.630158 CTGAATCCTTGAGTCAGGCAG 58.370 52.381 12.40 0.00 46.66 4.85
3164 5202 1.280421 GAATCCTTGAGTCAGGCAGGT 59.720 52.381 8.83 0.00 33.35 4.00
3243 5286 0.676782 ATTTGCACGGTACCTGCTCC 60.677 55.000 26.32 7.59 35.53 4.70
3256 5299 2.644798 ACCTGCTCCTCCAGTTATGTTT 59.355 45.455 0.00 0.00 0.00 2.83
3295 5338 2.684881 CCTTTGCCTACATCACCACATC 59.315 50.000 0.00 0.00 0.00 3.06
3316 5359 2.295885 GATCAATCCCCTGTGAGCTTG 58.704 52.381 0.00 0.00 0.00 4.01
3357 5400 8.589335 TTATTTATCGGAGTAGCAATCACTTC 57.411 34.615 0.00 0.00 0.00 3.01
3360 5403 2.766263 TCGGAGTAGCAATCACTTCCAT 59.234 45.455 0.00 0.00 0.00 3.41
3409 5452 1.079612 GATGTGGCCCTTGCTTTGC 60.080 57.895 0.00 0.00 37.74 3.68
3514 5558 6.993902 ACAAAATGAAATTGGAGCAAAGATGT 59.006 30.769 0.00 0.00 36.10 3.06
3540 5585 3.062909 TCAGTTTTCAAACTTGTCGACCG 59.937 43.478 14.12 6.76 46.52 4.79
3567 5612 1.560860 GCAGCCGTGTGAAGTGTCTC 61.561 60.000 0.00 0.00 0.00 3.36
3568 5613 0.032678 CAGCCGTGTGAAGTGTCTCT 59.967 55.000 0.00 0.00 0.00 3.10
3570 5615 1.961394 AGCCGTGTGAAGTGTCTCTAA 59.039 47.619 0.00 0.00 0.00 2.10
3572 5617 2.475487 GCCGTGTGAAGTGTCTCTAAAC 59.525 50.000 0.00 0.00 0.00 2.01
3573 5618 3.057734 CCGTGTGAAGTGTCTCTAAACC 58.942 50.000 0.00 0.00 0.00 3.27
3594 6130 2.738521 CCTTCTGTGTGCCGTCGG 60.739 66.667 6.99 6.99 0.00 4.79
3679 6307 2.732844 AAACCACGGGACCAAAACTA 57.267 45.000 0.00 0.00 0.00 2.24
3833 8256 2.434359 GCTCAGTGGCCGGTGTAC 60.434 66.667 1.90 0.00 0.00 2.90
3845 8268 6.208204 AGTGGCCGGTGTACTAATAATACTAG 59.792 42.308 1.90 0.00 0.00 2.57
3848 8271 5.184671 GCCGGTGTACTAATAATACTAGCCT 59.815 44.000 1.90 0.00 0.00 4.58
3849 8272 6.624642 GCCGGTGTACTAATAATACTAGCCTC 60.625 46.154 1.90 0.00 0.00 4.70
3871 8714 7.603024 GCCTCTATTTCTAAATGTATAAGGCGT 59.397 37.037 0.00 0.00 0.00 5.68
3922 8860 3.529216 AGGGGATCCTAGCTACTACAC 57.471 52.381 12.58 0.00 42.75 2.90
3929 8867 2.932614 TCCTAGCTACTACACGACGAAC 59.067 50.000 0.00 0.00 0.00 3.95
3970 8908 2.612221 GGGGAGTCGTCAAGGTTTACAG 60.612 54.545 0.00 0.00 0.00 2.74
3987 8925 3.698029 ACAGTGCGCATAAAATGATCC 57.302 42.857 15.91 0.00 0.00 3.36
3998 8936 5.504665 GCATAAAATGATCCCAGTTCGTCAG 60.505 44.000 0.00 0.00 29.42 3.51
4001 8939 1.215647 GATCCCAGTTCGTCAGCGT 59.784 57.895 0.00 0.00 39.49 5.07
4034 8972 3.263425 GGTGGAGTGGGTAAGATTGAGAA 59.737 47.826 0.00 0.00 0.00 2.87
4037 8975 4.020218 TGGAGTGGGTAAGATTGAGAACTG 60.020 45.833 0.00 0.00 0.00 3.16
4051 8989 1.273606 AGAACTGACCGTGACCAGATG 59.726 52.381 0.00 0.00 34.65 2.90
4059 8999 2.167281 ACCGTGACCAGATGATTCAGAG 59.833 50.000 0.00 0.00 0.00 3.35
4133 9080 6.370994 TCTTCATCATCAGCTCTGACTTTTTC 59.629 38.462 1.15 0.00 43.11 2.29
4134 9081 4.940046 TCATCATCAGCTCTGACTTTTTCC 59.060 41.667 1.15 0.00 43.11 3.13
4150 9097 2.996734 CCCCACAAGGCGCCAAAT 60.997 61.111 31.54 11.91 0.00 2.32
4197 9145 7.712639 CACCAGTGAATAGTGATAGCTTTGTAT 59.287 37.037 0.00 0.00 33.21 2.29
4198 9146 7.928706 ACCAGTGAATAGTGATAGCTTTGTATC 59.071 37.037 0.00 0.00 0.00 2.24
4225 9182 2.489938 TATTTGGCTTCTCGCTGGTT 57.510 45.000 0.00 0.00 39.13 3.67
4236 9193 2.037251 TCTCGCTGGTTAAGAGCAACTT 59.963 45.455 7.10 2.10 42.04 2.66
4258 9215 0.695347 CCCAATCCCCTATCCAGCTC 59.305 60.000 0.00 0.00 0.00 4.09
4259 9216 1.739750 CCAATCCCCTATCCAGCTCT 58.260 55.000 0.00 0.00 0.00 4.09
4260 9217 2.495383 CCCAATCCCCTATCCAGCTCTA 60.495 54.545 0.00 0.00 0.00 2.43
4261 9218 2.836981 CCAATCCCCTATCCAGCTCTAG 59.163 54.545 0.00 0.00 0.00 2.43
4262 9219 3.515562 CAATCCCCTATCCAGCTCTAGT 58.484 50.000 0.00 0.00 0.00 2.57
4263 9220 3.906846 CAATCCCCTATCCAGCTCTAGTT 59.093 47.826 0.00 0.00 0.00 2.24
4264 9221 3.246416 TCCCCTATCCAGCTCTAGTTC 57.754 52.381 0.00 0.00 0.00 3.01
4265 9222 2.518407 TCCCCTATCCAGCTCTAGTTCA 59.482 50.000 0.00 0.00 0.00 3.18
4266 9223 2.896685 CCCCTATCCAGCTCTAGTTCAG 59.103 54.545 0.00 0.00 0.00 3.02
4267 9224 3.571590 CCCTATCCAGCTCTAGTTCAGT 58.428 50.000 0.00 0.00 0.00 3.41
4268 9225 3.964031 CCCTATCCAGCTCTAGTTCAGTT 59.036 47.826 0.00 0.00 0.00 3.16
4269 9226 4.407296 CCCTATCCAGCTCTAGTTCAGTTT 59.593 45.833 0.00 0.00 0.00 2.66
4270 9227 5.104735 CCCTATCCAGCTCTAGTTCAGTTTT 60.105 44.000 0.00 0.00 0.00 2.43
4271 9228 6.098409 CCCTATCCAGCTCTAGTTCAGTTTTA 59.902 42.308 0.00 0.00 0.00 1.52
4272 9229 7.206687 CCTATCCAGCTCTAGTTCAGTTTTAG 58.793 42.308 0.00 0.00 0.00 1.85
4273 9230 6.859112 ATCCAGCTCTAGTTCAGTTTTAGA 57.141 37.500 0.00 0.00 0.00 2.10
4274 9231 6.274157 TCCAGCTCTAGTTCAGTTTTAGAG 57.726 41.667 3.93 3.93 42.01 2.43
4291 9248 0.678950 GAGCATCTCTAGCAGACCCC 59.321 60.000 0.00 0.00 32.26 4.95
4292 9249 1.112315 AGCATCTCTAGCAGACCCCG 61.112 60.000 0.00 0.00 32.26 5.73
4293 9250 1.365633 CATCTCTAGCAGACCCCGC 59.634 63.158 0.00 0.00 32.26 6.13
4294 9251 1.075970 ATCTCTAGCAGACCCCGCA 60.076 57.895 0.00 0.00 32.26 5.69
4295 9252 0.470833 ATCTCTAGCAGACCCCGCAT 60.471 55.000 0.00 0.00 32.26 4.73
4296 9253 1.109920 TCTCTAGCAGACCCCGCATC 61.110 60.000 0.00 0.00 0.00 3.91
4297 9254 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
4298 9255 3.161450 TAGCAGACCCCGCATCCC 61.161 66.667 0.00 0.00 0.00 3.85
4301 9258 4.530857 CAGACCCCGCATCCCGAC 62.531 72.222 0.00 0.00 40.02 4.79
4310 9267 4.221422 CATCCCGACGACCCGCAT 62.221 66.667 0.00 0.00 0.00 4.73
4311 9268 3.467226 ATCCCGACGACCCGCATT 61.467 61.111 0.00 0.00 0.00 3.56
4312 9269 3.026431 ATCCCGACGACCCGCATTT 62.026 57.895 0.00 0.00 0.00 2.32
4313 9270 2.530958 ATCCCGACGACCCGCATTTT 62.531 55.000 0.00 0.00 0.00 1.82
4314 9271 2.478746 CCGACGACCCGCATTTTG 59.521 61.111 0.00 0.00 0.00 2.44
4315 9272 2.322081 CCGACGACCCGCATTTTGT 61.322 57.895 0.00 0.00 0.00 2.83
4316 9273 1.154488 CGACGACCCGCATTTTGTG 60.154 57.895 0.00 0.00 0.00 3.33
4317 9274 1.837538 CGACGACCCGCATTTTGTGT 61.838 55.000 0.00 0.00 0.00 3.72
4318 9275 0.309612 GACGACCCGCATTTTGTGTT 59.690 50.000 0.00 0.00 0.00 3.32
4319 9276 0.309612 ACGACCCGCATTTTGTGTTC 59.690 50.000 0.00 0.00 0.00 3.18
4320 9277 0.724453 CGACCCGCATTTTGTGTTCG 60.724 55.000 0.00 0.00 0.00 3.95
4321 9278 1.001745 GACCCGCATTTTGTGTTCGC 61.002 55.000 0.00 0.00 0.00 4.70
4322 9279 1.007964 CCCGCATTTTGTGTTCGCA 60.008 52.632 0.00 0.00 0.00 5.10
4323 9280 0.596083 CCCGCATTTTGTGTTCGCAA 60.596 50.000 0.00 0.00 0.00 4.85
4324 9281 1.417372 CCGCATTTTGTGTTCGCAAT 58.583 45.000 0.00 0.00 0.00 3.56
4325 9282 1.791785 CCGCATTTTGTGTTCGCAATT 59.208 42.857 0.00 0.00 0.00 2.32
4326 9283 2.159986 CCGCATTTTGTGTTCGCAATTC 60.160 45.455 0.00 0.00 0.00 2.17
4327 9284 2.468865 CGCATTTTGTGTTCGCAATTCG 60.469 45.455 0.00 0.00 40.15 3.34
4328 9285 2.718490 GCATTTTGTGTTCGCAATTCGC 60.718 45.455 0.00 0.42 38.27 4.70
4338 9295 2.058777 GCAATTCGCGGAAAAACGG 58.941 52.632 6.13 0.00 0.00 4.44
4339 9296 0.386226 GCAATTCGCGGAAAAACGGA 60.386 50.000 6.13 0.00 0.00 4.69
4340 9297 1.731098 GCAATTCGCGGAAAAACGGAT 60.731 47.619 6.13 0.00 0.00 4.18
4341 9298 2.591133 CAATTCGCGGAAAAACGGATT 58.409 42.857 6.13 0.00 37.99 3.01
4342 9299 2.983803 CAATTCGCGGAAAAACGGATTT 59.016 40.909 6.13 0.00 35.34 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 321 4.925054 CGACCCGAGTTACTGAAATGTTAA 59.075 41.667 0.00 0.00 0.00 2.01
61 322 4.218200 TCGACCCGAGTTACTGAAATGTTA 59.782 41.667 0.00 0.00 0.00 2.41
62 323 3.006110 TCGACCCGAGTTACTGAAATGTT 59.994 43.478 0.00 0.00 0.00 2.71
78 339 1.721487 CATGTCCGCAAATCGACCC 59.279 57.895 0.00 0.00 41.67 4.46
108 369 1.119684 GGTTTTTGAGGTGTGCCCTT 58.880 50.000 0.00 0.00 46.51 3.95
114 375 2.106566 TGCATGTGGTTTTTGAGGTGT 58.893 42.857 0.00 0.00 0.00 4.16
117 378 4.880759 TGTAATGCATGTGGTTTTTGAGG 58.119 39.130 0.00 0.00 0.00 3.86
121 382 4.343526 TGTCCTGTAATGCATGTGGTTTTT 59.656 37.500 0.00 0.00 0.00 1.94
180 441 6.841443 ATTAGTTCGAATGCTCTGATTCAG 57.159 37.500 7.38 7.38 32.67 3.02
243 504 4.451900 GTGGTGATAGGTAATTGAGGTGG 58.548 47.826 0.00 0.00 0.00 4.61
268 560 3.795623 ACATGCATGGAAGATTCTTGC 57.204 42.857 29.41 10.69 37.06 4.01
289 581 1.328279 GTTTTACTGGGTTGCTGGCT 58.672 50.000 0.00 0.00 0.00 4.75
298 590 0.662077 GCGCGTTTGGTTTTACTGGG 60.662 55.000 8.43 0.00 0.00 4.45
316 608 0.025513 GATGACATTCGCTGTGACGC 59.974 55.000 0.00 0.00 38.54 5.19
380 673 1.541670 GGTGGTGTTAAGCTCGGTTCA 60.542 52.381 0.00 0.00 0.00 3.18
410 703 8.893560 AGTCCCTTAGGGTTTTAGTTTGTTATA 58.106 33.333 18.01 0.00 44.74 0.98
416 710 5.658198 ACAGTCCCTTAGGGTTTTAGTTT 57.342 39.130 18.01 0.00 44.74 2.66
433 727 3.030652 CGGTGTGCCCAAACAGTC 58.969 61.111 0.00 0.00 0.00 3.51
442 736 2.653766 CGTGTTTTGCGGTGTGCC 60.654 61.111 0.00 0.00 45.60 5.01
447 741 4.897856 GCGTGCGTGTTTTGCGGT 62.898 61.111 0.00 0.00 34.24 5.68
450 744 2.696521 CGATGCGTGCGTGTTTTGC 61.697 57.895 0.00 0.00 0.00 3.68
706 1024 0.035458 CTTCACTCTCCACCCACCAC 59.965 60.000 0.00 0.00 0.00 4.16
750 1076 2.765250 TTTCCTGTCGCCGCTCTGAC 62.765 60.000 0.00 0.00 35.67 3.51
751 1077 2.492449 CTTTCCTGTCGCCGCTCTGA 62.492 60.000 0.00 0.00 0.00 3.27
752 1078 2.048222 TTTCCTGTCGCCGCTCTG 60.048 61.111 0.00 0.00 0.00 3.35
943 1272 3.591023 GAAACCGAGAAAGAGGAGAAGG 58.409 50.000 0.00 0.00 0.00 3.46
950 1279 4.241681 CTGAAGAGGAAACCGAGAAAGAG 58.758 47.826 0.00 0.00 0.00 2.85
951 1280 3.555168 GCTGAAGAGGAAACCGAGAAAGA 60.555 47.826 0.00 0.00 0.00 2.52
952 1281 2.739379 GCTGAAGAGGAAACCGAGAAAG 59.261 50.000 0.00 0.00 0.00 2.62
953 1282 2.368875 AGCTGAAGAGGAAACCGAGAAA 59.631 45.455 0.00 0.00 0.00 2.52
954 1283 1.971357 AGCTGAAGAGGAAACCGAGAA 59.029 47.619 0.00 0.00 0.00 2.87
971 1303 2.614259 TCTGAACCAAGGAGAGAAGCT 58.386 47.619 0.00 0.00 0.00 3.74
973 1305 3.194542 ACGATCTGAACCAAGGAGAGAAG 59.805 47.826 0.00 0.00 0.00 2.85
1205 1697 2.694175 CTTGTTTGCTTGCGCGTCGA 62.694 55.000 8.43 0.00 39.65 4.20
1206 1698 2.349376 CTTGTTTGCTTGCGCGTCG 61.349 57.895 8.43 0.00 39.65 5.12
1207 1699 2.639000 GCTTGTTTGCTTGCGCGTC 61.639 57.895 8.43 0.00 39.65 5.19
1208 1700 2.655044 GCTTGTTTGCTTGCGCGT 60.655 55.556 8.43 0.00 39.65 6.01
1209 1701 1.550659 ATTGCTTGTTTGCTTGCGCG 61.551 50.000 0.00 0.00 39.65 6.86
1210 1702 0.162294 GATTGCTTGTTTGCTTGCGC 59.838 50.000 0.00 0.00 0.00 6.09
1211 1703 0.785979 GGATTGCTTGTTTGCTTGCG 59.214 50.000 0.00 0.00 0.00 4.85
1212 1704 1.796459 CAGGATTGCTTGTTTGCTTGC 59.204 47.619 0.00 0.00 0.00 4.01
1220 1712 1.580845 GCGCAGACAGGATTGCTTGT 61.581 55.000 0.30 0.00 38.16 3.16
1224 1716 4.527157 GCGCGCAGACAGGATTGC 62.527 66.667 29.10 0.00 36.97 3.56
1246 1769 6.480320 ACCGATAAACTAGATTGATGCAAGAC 59.520 38.462 0.00 0.00 0.00 3.01
1247 1770 6.582636 ACCGATAAACTAGATTGATGCAAGA 58.417 36.000 0.00 0.00 0.00 3.02
1248 1771 6.851222 ACCGATAAACTAGATTGATGCAAG 57.149 37.500 0.00 0.00 0.00 4.01
1252 1775 6.398918 CCCCTACCGATAAACTAGATTGATG 58.601 44.000 0.00 0.00 0.00 3.07
1256 1791 3.581770 GCCCCCTACCGATAAACTAGATT 59.418 47.826 0.00 0.00 0.00 2.40
1276 1811 1.669999 CCAATTACCCAGCTGCTGCC 61.670 60.000 23.86 0.00 40.80 4.85
1329 1883 6.546403 TCTCAGTTAACTACGAAGGAGCATAT 59.454 38.462 8.04 0.00 0.00 1.78
1332 1886 4.077108 TCTCAGTTAACTACGAAGGAGCA 58.923 43.478 8.04 0.00 0.00 4.26
1347 1901 2.834549 AGACGAACCCATCATCTCAGTT 59.165 45.455 0.00 0.00 0.00 3.16
1348 1902 2.461695 AGACGAACCCATCATCTCAGT 58.538 47.619 0.00 0.00 0.00 3.41
1350 1904 4.023980 ACTAAGACGAACCCATCATCTCA 58.976 43.478 0.00 0.00 0.00 3.27
1360 1914 4.288531 CATCGGACATACTAAGACGAACC 58.711 47.826 0.00 0.00 33.86 3.62
1374 1928 2.052782 TAGTCTAGCAGCATCGGACA 57.947 50.000 0.00 0.00 0.00 4.02
1375 1929 2.817258 AGATAGTCTAGCAGCATCGGAC 59.183 50.000 0.00 0.00 0.00 4.79
1393 1950 6.097412 GGAACCAGCAGGAATCAAAATTAGAT 59.903 38.462 0.35 0.00 38.69 1.98
1397 1954 3.056607 CGGAACCAGCAGGAATCAAAATT 60.057 43.478 0.35 0.00 38.69 1.82
1507 2067 6.073003 GGTCATTCTCGAAGTTCTTCATGTTT 60.073 38.462 12.15 0.00 0.00 2.83
1580 2140 8.273557 CGAAATCCTAGATTAACACATAAACCG 58.726 37.037 0.00 0.00 0.00 4.44
1606 2174 6.010294 TCGACTATTAACTGCATAGTAGCC 57.990 41.667 0.00 0.00 37.54 3.93
1611 2179 4.384247 GCTGCTCGACTATTAACTGCATAG 59.616 45.833 0.00 0.00 0.00 2.23
1612 2180 4.202111 TGCTGCTCGACTATTAACTGCATA 60.202 41.667 0.00 0.00 0.00 3.14
1615 2183 2.537625 CTGCTGCTCGACTATTAACTGC 59.462 50.000 0.00 0.00 0.00 4.40
1662 2246 7.979537 TCGCAGTATATACAAAGACAAGATGTT 59.020 33.333 15.18 0.00 0.00 2.71
1686 2272 2.900122 ACACGGCAATTGAGAATTCG 57.100 45.000 10.34 5.10 0.00 3.34
1725 2311 6.593382 GCTGTTTAATTGCATAATTCCACCAA 59.407 34.615 0.00 0.00 37.64 3.67
1754 2344 3.916989 ACAGACAAAGAGGGGGAAACTAT 59.083 43.478 0.00 0.00 0.00 2.12
1784 2374 7.716998 TCATTAATCCAATGTTAAGGAGCTCTC 59.283 37.037 14.64 3.76 43.88 3.20
1812 2421 6.762702 TTGTCTCAATGATGCAACACATAT 57.237 33.333 0.00 0.00 39.84 1.78
1817 2426 6.433716 TCCTATTTTGTCTCAATGATGCAACA 59.566 34.615 0.00 0.00 0.00 3.33
1835 2444 6.494835 ACAGAAGAAAGCCACAAATCCTATTT 59.505 34.615 0.00 0.00 0.00 1.40
1862 2471 7.748241 GCATTCTGACTTACTTTCATCAAGAAC 59.252 37.037 0.00 0.00 35.56 3.01
1902 2518 7.598869 GTGAGGACGCATTTCTATAACATCATA 59.401 37.037 0.00 0.00 0.00 2.15
1903 2519 6.425114 GTGAGGACGCATTTCTATAACATCAT 59.575 38.462 0.00 0.00 0.00 2.45
1947 2569 3.782889 ACAGCAAGGACAAAAGTTCAC 57.217 42.857 0.00 0.00 0.00 3.18
1956 2578 9.823647 TGAATATTTTTAAAAACAGCAAGGACA 57.176 25.926 15.35 4.78 0.00 4.02
1983 2605 9.825109 TCTGTCACACATATCGGAAATTAAATA 57.175 29.630 0.00 0.00 0.00 1.40
1984 2606 8.731275 TCTGTCACACATATCGGAAATTAAAT 57.269 30.769 0.00 0.00 0.00 1.40
1986 2608 7.327975 ACTCTGTCACACATATCGGAAATTAA 58.672 34.615 0.00 0.00 0.00 1.40
1987 2609 6.873997 ACTCTGTCACACATATCGGAAATTA 58.126 36.000 0.00 0.00 0.00 1.40
1994 2616 4.108336 CAGGAACTCTGTCACACATATCG 58.892 47.826 0.00 0.00 34.60 2.92
1997 2619 2.028112 GCCAGGAACTCTGTCACACATA 60.028 50.000 0.00 0.00 41.83 2.29
2005 2627 1.615392 GCATTTTGCCAGGAACTCTGT 59.385 47.619 0.00 0.00 41.83 3.41
2016 2638 1.079875 CGGCATGACAGCATTTTGCC 61.080 55.000 0.00 5.56 46.52 4.52
2043 2666 5.048643 CGGGATCGACATGTCTAGTTAGAAT 60.049 44.000 22.95 4.38 39.00 2.40
2061 2684 2.413310 TGTTTTTAGCTCCCGGGATC 57.587 50.000 27.07 21.69 0.00 3.36
2066 2689 2.094752 CACCCAATGTTTTTAGCTCCCG 60.095 50.000 0.00 0.00 0.00 5.14
2150 2774 6.376018 AGTTCCTTTTGTACTTGCACAACTAA 59.624 34.615 0.00 0.00 38.12 2.24
2214 2841 8.135529 CCTAAGAATAAAATAAAAGGCTTCCCG 58.864 37.037 0.00 0.00 35.76 5.14
2239 2873 9.059260 TGACAGAAACACTTATTTACTTTACCC 57.941 33.333 0.00 0.00 0.00 3.69
2251 2885 7.966753 CGCTTACTACTATGACAGAAACACTTA 59.033 37.037 0.00 0.00 0.00 2.24
2262 2896 5.332656 GCTCAATTGCGCTTACTACTATGAC 60.333 44.000 13.10 0.00 0.00 3.06
2263 2897 4.745125 GCTCAATTGCGCTTACTACTATGA 59.255 41.667 13.10 0.00 0.00 2.15
2264 2898 4.507756 TGCTCAATTGCGCTTACTACTATG 59.492 41.667 20.25 0.00 35.36 2.23
2265 2899 4.508124 GTGCTCAATTGCGCTTACTACTAT 59.492 41.667 20.25 0.00 40.01 2.12
2267 2901 2.673368 GTGCTCAATTGCGCTTACTACT 59.327 45.455 20.25 0.00 40.01 2.57
2275 2909 0.025513 CGTCTAGTGCTCAATTGCGC 59.974 55.000 13.47 13.47 43.09 6.09
2276 2910 1.350193 ACGTCTAGTGCTCAATTGCG 58.650 50.000 0.00 0.00 35.36 4.85
2277 2911 3.813529 AAACGTCTAGTGCTCAATTGC 57.186 42.857 0.00 0.00 0.00 3.56
2278 2912 3.908382 GCAAAACGTCTAGTGCTCAATTG 59.092 43.478 0.00 0.00 34.13 2.32
2279 2913 3.058224 GGCAAAACGTCTAGTGCTCAATT 60.058 43.478 11.07 0.00 37.17 2.32
2280 2914 2.484264 GGCAAAACGTCTAGTGCTCAAT 59.516 45.455 11.07 0.00 37.17 2.57
2281 2915 1.871039 GGCAAAACGTCTAGTGCTCAA 59.129 47.619 11.07 0.00 37.17 3.02
2282 2916 1.202592 TGGCAAAACGTCTAGTGCTCA 60.203 47.619 11.07 6.35 37.17 4.26
2283 2917 1.508632 TGGCAAAACGTCTAGTGCTC 58.491 50.000 11.07 4.43 37.17 4.26
2284 2918 2.076863 GATGGCAAAACGTCTAGTGCT 58.923 47.619 11.07 0.00 37.17 4.40
2285 2919 1.201921 CGATGGCAAAACGTCTAGTGC 60.202 52.381 0.00 0.00 36.24 4.40
2286 2920 1.201921 GCGATGGCAAAACGTCTAGTG 60.202 52.381 12.04 0.00 39.62 2.74
2287 2921 1.076332 GCGATGGCAAAACGTCTAGT 58.924 50.000 12.04 0.00 39.62 2.57
2288 2922 0.373716 GGCGATGGCAAAACGTCTAG 59.626 55.000 1.01 0.00 42.47 2.43
2289 2923 0.036765 AGGCGATGGCAAAACGTCTA 60.037 50.000 15.07 0.00 40.11 2.59
2290 2924 0.036765 TAGGCGATGGCAAAACGTCT 60.037 50.000 18.99 18.99 43.99 4.18
2291 2925 0.373716 CTAGGCGATGGCAAAACGTC 59.626 55.000 1.01 8.22 42.47 4.34
2292 2926 0.036765 TCTAGGCGATGGCAAAACGT 60.037 50.000 1.01 0.00 42.47 3.99
2293 2927 0.652592 CTCTAGGCGATGGCAAAACG 59.347 55.000 1.01 0.00 42.47 3.60
2294 2928 0.378610 GCTCTAGGCGATGGCAAAAC 59.621 55.000 1.01 0.00 42.47 2.43
2295 2929 0.748005 GGCTCTAGGCGATGGCAAAA 60.748 55.000 1.01 0.00 42.47 2.44
2296 2930 1.153168 GGCTCTAGGCGATGGCAAA 60.153 57.895 1.01 0.00 42.47 3.68
2297 2931 0.759060 TAGGCTCTAGGCGATGGCAA 60.759 55.000 1.01 0.00 46.23 4.52
2298 2932 1.152546 TAGGCTCTAGGCGATGGCA 60.153 57.895 1.01 0.00 46.23 4.92
2299 2933 1.589113 CTAGGCTCTAGGCGATGGC 59.411 63.158 0.00 0.00 46.23 4.40
2300 2934 2.271940 CCTAGGCTCTAGGCGATGG 58.728 63.158 13.35 0.00 46.23 3.51
2306 2940 1.490574 AAGTGTGCCTAGGCTCTAGG 58.509 55.000 33.07 18.85 42.51 3.02
2307 2941 3.491792 GCTTAAGTGTGCCTAGGCTCTAG 60.492 52.174 33.07 21.38 42.51 2.43
2308 2942 2.431057 GCTTAAGTGTGCCTAGGCTCTA 59.569 50.000 33.07 17.04 42.51 2.43
2309 2943 1.208293 GCTTAAGTGTGCCTAGGCTCT 59.792 52.381 33.07 23.84 42.51 4.09
2310 2944 1.066143 TGCTTAAGTGTGCCTAGGCTC 60.066 52.381 33.07 29.23 42.51 4.70
2311 2945 0.984230 TGCTTAAGTGTGCCTAGGCT 59.016 50.000 33.07 16.15 42.51 4.58
2312 2946 1.087501 GTGCTTAAGTGTGCCTAGGC 58.912 55.000 27.71 27.71 42.35 3.93
2313 2947 1.679032 GGGTGCTTAAGTGTGCCTAGG 60.679 57.143 3.67 3.67 0.00 3.02
2314 2948 1.279271 AGGGTGCTTAAGTGTGCCTAG 59.721 52.381 4.02 0.00 0.00 3.02
2315 2949 1.278127 GAGGGTGCTTAAGTGTGCCTA 59.722 52.381 4.02 0.00 0.00 3.93
2316 2950 0.036875 GAGGGTGCTTAAGTGTGCCT 59.963 55.000 4.02 0.00 0.00 4.75
2317 2951 0.960861 GGAGGGTGCTTAAGTGTGCC 60.961 60.000 4.02 1.77 0.00 5.01
2318 2952 0.036875 AGGAGGGTGCTTAAGTGTGC 59.963 55.000 4.02 0.00 0.00 4.57
2319 2953 2.093447 CCTAGGAGGGTGCTTAAGTGTG 60.093 54.545 1.05 0.00 0.00 3.82
2320 2954 2.188817 CCTAGGAGGGTGCTTAAGTGT 58.811 52.381 1.05 0.00 0.00 3.55
2321 2955 1.134371 GCCTAGGAGGGTGCTTAAGTG 60.134 57.143 14.75 0.00 35.37 3.16
2322 2956 1.205055 GCCTAGGAGGGTGCTTAAGT 58.795 55.000 14.75 0.00 35.37 2.24
2323 2957 1.134371 GTGCCTAGGAGGGTGCTTAAG 60.134 57.143 14.75 0.00 35.37 1.85
2324 2958 0.909623 GTGCCTAGGAGGGTGCTTAA 59.090 55.000 14.75 0.00 35.37 1.85
2325 2959 1.327690 CGTGCCTAGGAGGGTGCTTA 61.328 60.000 14.75 0.00 35.37 3.09
2326 2960 2.660064 CGTGCCTAGGAGGGTGCTT 61.660 63.158 14.75 0.00 35.37 3.91
2327 2961 3.077556 CGTGCCTAGGAGGGTGCT 61.078 66.667 14.75 0.00 35.37 4.40
2328 2962 4.840005 GCGTGCCTAGGAGGGTGC 62.840 72.222 14.75 4.50 35.37 5.01
2329 2963 4.162690 GGCGTGCCTAGGAGGGTG 62.163 72.222 14.75 0.00 35.37 4.61
2330 2964 4.400251 AGGCGTGCCTAGGAGGGT 62.400 66.667 14.75 0.00 46.14 4.34
2348 2982 6.017440 GTCAGCACAGACACCATAGTTAAAAA 60.017 38.462 0.00 0.00 38.40 1.94
2349 2983 5.468746 GTCAGCACAGACACCATAGTTAAAA 59.531 40.000 0.00 0.00 38.40 1.52
2350 2984 4.994852 GTCAGCACAGACACCATAGTTAAA 59.005 41.667 0.00 0.00 38.40 1.52
2351 2985 4.283467 AGTCAGCACAGACACCATAGTTAA 59.717 41.667 6.72 0.00 40.98 2.01
2352 2986 3.832490 AGTCAGCACAGACACCATAGTTA 59.168 43.478 6.72 0.00 40.98 2.24
2353 2987 2.634940 AGTCAGCACAGACACCATAGTT 59.365 45.455 6.72 0.00 40.98 2.24
2354 2988 2.251818 AGTCAGCACAGACACCATAGT 58.748 47.619 6.72 0.00 40.98 2.12
2355 2989 3.325293 AAGTCAGCACAGACACCATAG 57.675 47.619 6.72 0.00 40.98 2.23
2356 2990 4.758688 CATAAGTCAGCACAGACACCATA 58.241 43.478 6.72 0.00 40.98 2.74
2357 2991 3.603532 CATAAGTCAGCACAGACACCAT 58.396 45.455 6.72 0.00 40.98 3.55
2358 2992 2.871637 GCATAAGTCAGCACAGACACCA 60.872 50.000 6.72 0.00 40.98 4.17
2359 2993 1.734465 GCATAAGTCAGCACAGACACC 59.266 52.381 6.72 0.00 40.98 4.16
2360 2994 2.670414 GAGCATAAGTCAGCACAGACAC 59.330 50.000 6.72 0.00 40.98 3.67
2361 2995 2.299867 TGAGCATAAGTCAGCACAGACA 59.700 45.455 6.72 0.00 40.98 3.41
2362 2996 2.964740 TGAGCATAAGTCAGCACAGAC 58.035 47.619 0.00 0.00 38.81 3.51
2384 3018 0.892755 CAGCACCAGAACCATGCAAT 59.107 50.000 0.00 0.00 41.97 3.56
2389 3023 0.257039 GGATCCAGCACCAGAACCAT 59.743 55.000 6.95 0.00 0.00 3.55
2417 3051 5.708948 CAGTTCAAAGGACTGTCAAAACAA 58.291 37.500 10.38 0.00 39.66 2.83
2442 3076 4.027437 ACCTTACCAAGCTTTTTCCACAA 58.973 39.130 0.00 0.00 0.00 3.33
2443 3077 3.637769 ACCTTACCAAGCTTTTTCCACA 58.362 40.909 0.00 0.00 0.00 4.17
2447 3081 7.262772 AGTAAACAACCTTACCAAGCTTTTTC 58.737 34.615 0.00 0.00 33.06 2.29
2454 3520 7.562454 TGAGAAAGTAAACAACCTTACCAAG 57.438 36.000 0.00 0.00 33.06 3.61
2456 3522 6.488683 CCATGAGAAAGTAAACAACCTTACCA 59.511 38.462 0.00 0.00 33.06 3.25
2457 3523 6.072119 CCCATGAGAAAGTAAACAACCTTACC 60.072 42.308 0.00 0.00 33.06 2.85
2483 3549 1.201647 CTCGAGGTCTAAAGGTCGCAA 59.798 52.381 3.91 0.00 32.41 4.85
2485 3551 1.093159 TCTCGAGGTCTAAAGGTCGC 58.907 55.000 13.56 0.00 32.41 5.19
2486 3552 2.291190 GGATCTCGAGGTCTAAAGGTCG 59.709 54.545 24.34 0.00 0.00 4.79
2487 3553 3.288964 TGGATCTCGAGGTCTAAAGGTC 58.711 50.000 24.34 7.23 0.00 3.85
2489 3555 2.035321 GCTGGATCTCGAGGTCTAAAGG 59.965 54.545 24.34 8.85 0.00 3.11
2490 3556 2.955660 AGCTGGATCTCGAGGTCTAAAG 59.044 50.000 24.34 18.98 0.00 1.85
2492 3558 2.738587 AGCTGGATCTCGAGGTCTAA 57.261 50.000 24.34 12.67 0.00 2.10
2498 3569 4.453819 ACAAAAGAAAAGCTGGATCTCGAG 59.546 41.667 5.93 5.93 0.00 4.04
2501 3572 5.693555 CCAAACAAAAGAAAAGCTGGATCTC 59.306 40.000 0.00 0.00 0.00 2.75
2507 3578 5.523188 TGCATACCAAACAAAAGAAAAGCTG 59.477 36.000 0.00 0.00 0.00 4.24
2515 3586 6.275335 CCTCCATATGCATACCAAACAAAAG 58.725 40.000 8.99 0.00 0.00 2.27
2532 3605 5.104402 TCAATGACAGAATCAAGCCTCCATA 60.104 40.000 0.00 0.00 41.93 2.74
2538 3611 6.872628 TCATATCAATGACAGAATCAAGCC 57.127 37.500 0.00 0.00 41.93 4.35
2548 3630 7.229907 CCAGATTCCACAATCATATCAATGACA 59.770 37.037 0.00 0.00 44.79 3.58
2554 3636 4.401022 GGCCAGATTCCACAATCATATCA 58.599 43.478 0.00 0.00 41.03 2.15
2563 3767 1.299648 CTTCCGGCCAGATTCCACA 59.700 57.895 2.24 0.00 0.00 4.17
2617 3821 3.290710 ACACAGTGTGATTTGCCTTCTT 58.709 40.909 29.58 0.00 36.96 2.52
2633 3837 8.503196 TGATAAATACAAAACTACAGCACACAG 58.497 33.333 0.00 0.00 0.00 3.66
2678 3882 6.183360 TGTTCCTTAACAATGCCAAGACAAAT 60.183 34.615 0.00 0.00 42.60 2.32
2687 3891 6.509418 TGATAACTGTTCCTTAACAATGCC 57.491 37.500 0.00 0.00 44.79 4.40
2722 3927 2.945080 ATGTGATCGATGCTTGGGAT 57.055 45.000 0.54 0.00 0.00 3.85
2724 3929 2.684374 TGAAATGTGATCGATGCTTGGG 59.316 45.455 0.54 0.00 0.00 4.12
2725 3930 4.563337 ATGAAATGTGATCGATGCTTGG 57.437 40.909 0.54 0.00 0.00 3.61
2738 3943 2.806434 TGCAACCTGGCTATGAAATGT 58.194 42.857 0.00 0.00 34.04 2.71
2743 3948 2.240921 TGGTAATGCAACCTGGCTATGA 59.759 45.455 8.97 0.00 40.44 2.15
2745 3950 2.509548 TCTGGTAATGCAACCTGGCTAT 59.490 45.455 12.86 0.00 40.44 2.97
2746 3951 1.912731 TCTGGTAATGCAACCTGGCTA 59.087 47.619 12.86 0.00 40.44 3.93
2750 3955 3.317711 TGTTGTTCTGGTAATGCAACCTG 59.682 43.478 8.97 8.40 40.44 4.00
2751 3956 3.561143 TGTTGTTCTGGTAATGCAACCT 58.439 40.909 8.97 0.00 40.44 3.50
2752 3957 4.314740 TTGTTGTTCTGGTAATGCAACC 57.685 40.909 0.21 0.21 38.75 3.77
2753 3958 4.923281 GGATTGTTGTTCTGGTAATGCAAC 59.077 41.667 0.00 0.00 39.62 4.17
2772 4798 8.160106 GTGGATGTTTTCTAGAGGATATGGATT 58.840 37.037 0.00 0.00 0.00 3.01
2831 4861 9.341899 GTTTTTGTAGACGAAGCATGATATTTT 57.658 29.630 0.00 0.00 0.00 1.82
2832 4862 8.511321 TGTTTTTGTAGACGAAGCATGATATTT 58.489 29.630 0.00 0.00 0.00 1.40
2833 4863 8.039603 TGTTTTTGTAGACGAAGCATGATATT 57.960 30.769 0.00 0.00 0.00 1.28
2845 4875 6.727824 ATCAGAATCCTGTTTTTGTAGACG 57.272 37.500 0.00 0.00 41.16 4.18
2883 4913 8.766476 AGGAAGCAGTGATATTATACATAGCAT 58.234 33.333 0.00 0.00 0.00 3.79
2891 4921 9.778741 CCAAAAGTAGGAAGCAGTGATATTATA 57.221 33.333 0.00 0.00 0.00 0.98
2892 4922 8.275040 ACCAAAAGTAGGAAGCAGTGATATTAT 58.725 33.333 0.00 0.00 0.00 1.28
2893 4923 7.630082 ACCAAAAGTAGGAAGCAGTGATATTA 58.370 34.615 0.00 0.00 0.00 0.98
2894 4924 6.485171 ACCAAAAGTAGGAAGCAGTGATATT 58.515 36.000 0.00 0.00 0.00 1.28
2895 4925 6.067217 ACCAAAAGTAGGAAGCAGTGATAT 57.933 37.500 0.00 0.00 0.00 1.63
2896 4926 5.012664 TGACCAAAAGTAGGAAGCAGTGATA 59.987 40.000 0.00 0.00 0.00 2.15
2897 4927 4.202461 TGACCAAAAGTAGGAAGCAGTGAT 60.202 41.667 0.00 0.00 0.00 3.06
2898 4928 3.135712 TGACCAAAAGTAGGAAGCAGTGA 59.864 43.478 0.00 0.00 0.00 3.41
2899 4929 3.476552 TGACCAAAAGTAGGAAGCAGTG 58.523 45.455 0.00 0.00 0.00 3.66
2900 4930 3.857157 TGACCAAAAGTAGGAAGCAGT 57.143 42.857 0.00 0.00 0.00 4.40
2901 4931 3.691609 GGATGACCAAAAGTAGGAAGCAG 59.308 47.826 0.00 0.00 35.97 4.24
2902 4932 3.073798 TGGATGACCAAAAGTAGGAAGCA 59.926 43.478 0.00 0.00 43.91 3.91
2903 4933 3.686016 TGGATGACCAAAAGTAGGAAGC 58.314 45.455 0.00 0.00 43.91 3.86
2918 4948 9.342308 GAACTTATTACATCAGGAAATGGATGA 57.658 33.333 8.47 0.00 42.73 2.92
2920 4950 9.872684 ATGAACTTATTACATCAGGAAATGGAT 57.127 29.630 0.00 0.00 0.00 3.41
3064 5102 0.462375 ACTTCATACGGCGCATGGTA 59.538 50.000 19.21 8.79 0.00 3.25
3092 5130 1.669795 GCTCCGAGGCACCAAAAATTG 60.670 52.381 0.00 0.00 0.00 2.32
3127 5165 0.187117 TTCAGAAATGTGGGTGGGCA 59.813 50.000 0.00 0.00 0.00 5.36
3157 5195 1.423541 TGGTACATTTGACACCTGCCT 59.576 47.619 0.00 0.00 33.28 4.75
3256 5299 5.185056 GCAAAGGCCCTTCAACTATCTTTAA 59.815 40.000 0.00 0.00 0.00 1.52
3295 5338 0.467384 AGCTCACAGGGGATTGATCG 59.533 55.000 0.00 0.00 0.00 3.69
3345 5388 4.577693 GCATGAGAATGGAAGTGATTGCTA 59.422 41.667 0.00 0.00 0.00 3.49
3357 5400 5.473504 TGATCTTGATCATGCATGAGAATGG 59.526 40.000 31.36 19.89 40.64 3.16
3360 5403 7.582667 ATTTGATCTTGATCATGCATGAGAA 57.417 32.000 31.36 24.06 40.64 2.87
3409 5452 5.255687 TGCATGCCCACATATATAAGAAGG 58.744 41.667 16.68 0.00 33.67 3.46
3484 5528 7.727331 TTGCTCCAATTTCATTTTGTAAAGG 57.273 32.000 0.00 0.00 0.00 3.11
3540 5585 0.950555 TCACACGGCTGCACTTGATC 60.951 55.000 0.50 0.00 0.00 2.92
3567 5612 2.504367 CACACAGAAGGGGTGGTTTAG 58.496 52.381 0.00 0.00 40.54 1.85
3568 5613 1.477923 GCACACAGAAGGGGTGGTTTA 60.478 52.381 0.00 0.00 40.54 2.01
3570 5615 1.152756 GCACACAGAAGGGGTGGTT 60.153 57.895 0.00 0.00 40.54 3.67
3572 5617 2.282462 GGCACACAGAAGGGGTGG 60.282 66.667 0.00 0.00 40.54 4.61
3573 5618 2.669569 CGGCACACAGAAGGGGTG 60.670 66.667 0.00 0.00 41.95 4.61
3679 6307 3.826729 GCCAAACAGTTCTTATCTTGGGT 59.173 43.478 0.00 0.00 35.02 4.51
3845 8268 7.603024 ACGCCTTATACATTTAGAAATAGAGGC 59.397 37.037 0.00 0.00 0.00 4.70
3929 8867 0.924090 GCCGATAACAGCACTTCGAG 59.076 55.000 0.00 0.00 33.59 4.04
3970 8908 2.358898 ACTGGGATCATTTTATGCGCAC 59.641 45.455 14.90 0.00 0.00 5.34
3987 8925 2.954753 GCCAACGCTGACGAACTGG 61.955 63.158 0.00 0.00 43.93 4.00
3998 8936 2.568090 CACCCTGAATGCCAACGC 59.432 61.111 0.00 0.00 0.00 4.84
4001 8939 0.251297 CACTCCACCCTGAATGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
4034 8972 1.561643 ATCATCTGGTCACGGTCAGT 58.438 50.000 0.00 0.00 33.13 3.41
4037 8975 2.166459 TCTGAATCATCTGGTCACGGTC 59.834 50.000 0.00 0.00 0.00 4.79
4051 8989 7.872113 ACCATTTTTCATACCTCTCTGAATC 57.128 36.000 0.00 0.00 31.83 2.52
4108 9055 5.417754 AAAGTCAGAGCTGATGATGAAGA 57.582 39.130 3.19 0.00 42.18 2.87
4110 9057 5.413833 GGAAAAAGTCAGAGCTGATGATGAA 59.586 40.000 3.19 0.00 42.18 2.57
4134 9081 2.573340 GATTTGGCGCCTTGTGGG 59.427 61.111 29.70 0.00 38.36 4.61
4150 9097 2.481969 GCACTCATCGATGCAAGTAGGA 60.482 50.000 20.81 0.00 41.65 2.94
4197 9145 4.980434 GCGAGAAGCCAAATAATAGTACGA 59.020 41.667 0.00 0.00 40.81 3.43
4198 9146 5.251999 GCGAGAAGCCAAATAATAGTACG 57.748 43.478 0.00 0.00 40.81 3.67
4225 9182 4.569015 GGGGATTGGGTAAAGTTGCTCTTA 60.569 45.833 0.00 0.00 35.02 2.10
4236 9193 2.062636 GCTGGATAGGGGATTGGGTAA 58.937 52.381 0.00 0.00 0.00 2.85
4258 9215 7.647715 GCTAGAGATGCTCTAAAACTGAACTAG 59.352 40.741 5.75 0.00 41.74 2.57
4259 9216 7.122799 TGCTAGAGATGCTCTAAAACTGAACTA 59.877 37.037 5.75 0.00 41.74 2.24
4260 9217 6.071108 TGCTAGAGATGCTCTAAAACTGAACT 60.071 38.462 5.75 0.00 41.74 3.01
4261 9218 6.102663 TGCTAGAGATGCTCTAAAACTGAAC 58.897 40.000 5.75 0.00 41.74 3.18
4262 9219 6.153510 TCTGCTAGAGATGCTCTAAAACTGAA 59.846 38.462 5.75 0.00 41.74 3.02
4263 9220 5.654209 TCTGCTAGAGATGCTCTAAAACTGA 59.346 40.000 5.75 5.45 41.74 3.41
4264 9221 5.748152 GTCTGCTAGAGATGCTCTAAAACTG 59.252 44.000 5.75 3.67 41.74 3.16
4265 9222 5.163457 GGTCTGCTAGAGATGCTCTAAAACT 60.163 44.000 5.75 0.00 41.74 2.66
4266 9223 5.047188 GGTCTGCTAGAGATGCTCTAAAAC 58.953 45.833 5.75 2.62 41.74 2.43
4267 9224 4.100189 GGGTCTGCTAGAGATGCTCTAAAA 59.900 45.833 5.75 0.00 41.74 1.52
4268 9225 3.639094 GGGTCTGCTAGAGATGCTCTAAA 59.361 47.826 5.75 0.00 41.74 1.85
4269 9226 3.226777 GGGTCTGCTAGAGATGCTCTAA 58.773 50.000 5.75 0.00 41.74 2.10
4270 9227 2.489985 GGGGTCTGCTAGAGATGCTCTA 60.490 54.545 0.00 4.30 41.50 2.43
4271 9228 1.703411 GGGTCTGCTAGAGATGCTCT 58.297 55.000 0.00 2.22 43.83 4.09
4272 9229 0.678950 GGGGTCTGCTAGAGATGCTC 59.321 60.000 0.00 0.00 31.63 4.26
4273 9230 1.112315 CGGGGTCTGCTAGAGATGCT 61.112 60.000 0.00 0.00 31.63 3.79
4274 9231 1.365633 CGGGGTCTGCTAGAGATGC 59.634 63.158 0.00 0.00 31.63 3.91
4275 9232 1.365633 GCGGGGTCTGCTAGAGATG 59.634 63.158 0.00 0.00 31.63 2.90
4276 9233 0.470833 ATGCGGGGTCTGCTAGAGAT 60.471 55.000 0.00 0.00 31.63 2.75
4277 9234 1.075970 ATGCGGGGTCTGCTAGAGA 60.076 57.895 0.00 0.00 0.00 3.10
4278 9235 1.365633 GATGCGGGGTCTGCTAGAG 59.634 63.158 0.00 0.00 0.00 2.43
4279 9236 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
4280 9237 2.423446 GGATGCGGGGTCTGCTAG 59.577 66.667 0.30 0.00 0.00 3.42
4281 9238 3.161450 GGGATGCGGGGTCTGCTA 61.161 66.667 0.30 0.00 0.00 3.49
4284 9241 4.530857 GTCGGGATGCGGGGTCTG 62.531 72.222 0.00 0.00 0.00 3.51
4293 9250 3.733344 AATGCGGGTCGTCGGGATG 62.733 63.158 0.00 0.00 0.00 3.51
4294 9251 2.530958 AAAATGCGGGTCGTCGGGAT 62.531 55.000 0.00 0.00 0.00 3.85
4295 9252 3.242897 AAAATGCGGGTCGTCGGGA 62.243 57.895 0.00 0.00 0.00 5.14
4296 9253 2.744709 AAAATGCGGGTCGTCGGG 60.745 61.111 0.00 0.00 0.00 5.14
4297 9254 2.322081 ACAAAATGCGGGTCGTCGG 61.322 57.895 0.00 0.00 0.00 4.79
4298 9255 1.154488 CACAAAATGCGGGTCGTCG 60.154 57.895 0.00 0.00 0.00 5.12
4299 9256 0.309612 AACACAAAATGCGGGTCGTC 59.690 50.000 0.00 0.00 0.00 4.20
4300 9257 0.309612 GAACACAAAATGCGGGTCGT 59.690 50.000 0.00 0.00 0.00 4.34
4301 9258 0.724453 CGAACACAAAATGCGGGTCG 60.724 55.000 0.00 0.00 30.94 4.79
4302 9259 1.001745 GCGAACACAAAATGCGGGTC 61.002 55.000 0.00 0.00 0.00 4.46
4303 9260 1.007849 GCGAACACAAAATGCGGGT 60.008 52.632 0.00 0.00 0.00 5.28
4304 9261 0.596083 TTGCGAACACAAAATGCGGG 60.596 50.000 0.00 0.00 0.00 6.13
4305 9262 1.417372 ATTGCGAACACAAAATGCGG 58.583 45.000 0.00 0.00 32.27 5.69
4306 9263 2.468865 CGAATTGCGAACACAAAATGCG 60.469 45.455 0.00 0.00 44.57 4.73
4307 9264 2.718490 GCGAATTGCGAACACAAAATGC 60.718 45.455 0.00 0.00 44.57 3.56
4308 9265 3.075665 GCGAATTGCGAACACAAAATG 57.924 42.857 0.00 0.00 44.57 2.32
4320 9277 0.386226 TCCGTTTTTCCGCGAATTGC 60.386 50.000 8.23 0.00 41.47 3.56
4321 9278 2.256445 ATCCGTTTTTCCGCGAATTG 57.744 45.000 8.23 0.00 0.00 2.32
4322 9279 3.291809 AAATCCGTTTTTCCGCGAATT 57.708 38.095 8.23 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.