Multiple sequence alignment - TraesCS5D01G402900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G402900 chr5D 100.000 5303 0 0 1 5303 468692919 468687617 0.000000e+00 9793
1 TraesCS5D01G402900 chr5B 93.692 5073 176 58 274 5303 575524513 575519542 0.000000e+00 7463
2 TraesCS5D01G402900 chr5B 93.772 289 17 1 1 289 575526636 575526349 2.930000e-117 433
3 TraesCS5D01G402900 chr5A 95.323 4682 146 27 684 5303 588876757 588872087 0.000000e+00 7365
4 TraesCS5D01G402900 chr5A 84.814 349 38 6 1 344 588878558 588878220 2.370000e-88 337
5 TraesCS5D01G402900 chr5A 90.361 83 4 1 450 532 588876927 588876849 7.260000e-19 106
6 TraesCS5D01G402900 chr2D 75.405 309 41 19 27 330 94946571 94946849 3.360000e-22 117
7 TraesCS5D01G402900 chr2D 85.217 115 15 2 27 140 428414035 428413922 3.360000e-22 117
8 TraesCS5D01G402900 chr7A 85.217 115 13 3 27 140 309535827 309535716 1.210000e-21 115
9 TraesCS5D01G402900 chr6A 85.217 115 13 3 27 140 535362556 535362445 1.210000e-21 115
10 TraesCS5D01G402900 chr2A 85.217 115 14 3 27 140 164442924 164443036 1.210000e-21 115
11 TraesCS5D01G402900 chr2A 85.217 115 13 3 27 140 388746516 388746627 1.210000e-21 115
12 TraesCS5D01G402900 chr1D 85.217 115 13 3 27 140 323726249 323726138 1.210000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G402900 chr5D 468687617 468692919 5302 True 9793.000000 9793 100.000 1 5303 1 chr5D.!!$R1 5302
1 TraesCS5D01G402900 chr5B 575519542 575526636 7094 True 3948.000000 7463 93.732 1 5303 2 chr5B.!!$R1 5302
2 TraesCS5D01G402900 chr5A 588872087 588878558 6471 True 2602.666667 7365 90.166 1 5303 3 chr5A.!!$R1 5302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 3670 0.252197 GAGGGCAATACGGTCAACCT 59.748 55.0 0.00 0.0 0.00 3.50 F
1836 4918 0.526211 GGAATTGCTCGGGTTTGTCC 59.474 55.0 0.00 0.0 0.00 4.02 F
2284 5366 0.529337 CATGTCCCGAGCTGTAGCAG 60.529 60.0 6.65 0.0 45.16 4.24 F
2772 5854 1.128809 TACCGTCCTCTTTGGGGCAA 61.129 55.0 0.00 0.0 36.20 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 5041 0.033699 GGAGATTTCCTTGCAGGCCT 60.034 55.000 0.00 0.0 40.58 5.19 R
2772 5854 2.514458 AAACCTCCAGCGATTCCAAT 57.486 45.000 0.00 0.0 0.00 3.16 R
3891 6976 1.969085 CAGAAGCATGCAAGCCCAA 59.031 52.632 21.98 0.0 34.23 4.12 R
4678 7763 1.762957 GGGCCATAGAACAGTCTAGCA 59.237 52.381 4.39 0.0 39.75 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 113 4.923281 TCGTATCATCGCAAACCATATGAG 59.077 41.667 3.65 0.00 32.25 2.90
142 144 8.696374 TCCTTAGTATTCTTTGTACTGGATCAG 58.304 37.037 0.00 0.00 34.43 2.90
144 146 9.877178 CTTAGTATTCTTTGTACTGGATCAGTT 57.123 33.333 5.86 0.00 42.59 3.16
172 174 6.333168 AGTTAGTATGGATGAGAGGGAGTAGA 59.667 42.308 0.00 0.00 0.00 2.59
286 288 2.868044 GCCATGCCACTCTATTCCTACG 60.868 54.545 0.00 0.00 0.00 3.51
350 2203 5.448904 GGCCGTTACTGTTTAGTCACAAAAA 60.449 40.000 0.00 0.00 38.36 1.94
448 3499 3.007940 TGATGTGTGAAACCCTCCTACTG 59.992 47.826 0.00 0.00 34.36 2.74
453 3504 3.108376 GTGAAACCCTCCTACTGATCCT 58.892 50.000 0.00 0.00 0.00 3.24
454 3505 3.107601 TGAAACCCTCCTACTGATCCTG 58.892 50.000 0.00 0.00 0.00 3.86
455 3506 1.501582 AACCCTCCTACTGATCCTGC 58.498 55.000 0.00 0.00 0.00 4.85
456 3507 0.639392 ACCCTCCTACTGATCCTGCT 59.361 55.000 0.00 0.00 0.00 4.24
475 3526 2.666317 CTTTAACCCCATCCACATCCC 58.334 52.381 0.00 0.00 0.00 3.85
476 3527 1.687492 TTAACCCCATCCACATCCCA 58.313 50.000 0.00 0.00 0.00 4.37
615 3667 1.219664 CCGAGGGCAATACGGTCAA 59.780 57.895 0.00 0.00 41.47 3.18
616 3668 1.087771 CCGAGGGCAATACGGTCAAC 61.088 60.000 0.00 0.00 41.47 3.18
617 3669 1.087771 CGAGGGCAATACGGTCAACC 61.088 60.000 0.00 0.00 0.00 3.77
618 3670 0.252197 GAGGGCAATACGGTCAACCT 59.748 55.000 0.00 0.00 0.00 3.50
619 3671 0.252197 AGGGCAATACGGTCAACCTC 59.748 55.000 0.00 0.00 0.00 3.85
620 3672 0.746923 GGGCAATACGGTCAACCTCC 60.747 60.000 0.00 0.00 0.00 4.30
621 3673 0.746923 GGCAATACGGTCAACCTCCC 60.747 60.000 0.00 0.00 0.00 4.30
622 3674 0.252197 GCAATACGGTCAACCTCCCT 59.748 55.000 0.00 0.00 0.00 4.20
623 3675 2.012051 GCAATACGGTCAACCTCCCTG 61.012 57.143 0.00 0.00 0.00 4.45
624 3676 1.278127 CAATACGGTCAACCTCCCTGT 59.722 52.381 0.00 0.00 0.00 4.00
625 3677 1.652947 ATACGGTCAACCTCCCTGTT 58.347 50.000 0.00 0.00 0.00 3.16
626 3678 0.971386 TACGGTCAACCTCCCTGTTC 59.029 55.000 0.00 0.00 0.00 3.18
643 3695 4.461081 CCTGTTCCAATCCCAAACGATTTA 59.539 41.667 0.00 0.00 29.85 1.40
644 3696 5.047660 CCTGTTCCAATCCCAAACGATTTAA 60.048 40.000 0.00 0.00 29.85 1.52
646 3698 7.147983 CCTGTTCCAATCCCAAACGATTTAATA 60.148 37.037 0.00 0.00 29.85 0.98
680 3733 2.411476 AAAGGGAGGACGAAGGGGGA 62.411 60.000 0.00 0.00 0.00 4.81
686 3739 0.618981 AGGACGAAGGGGGAATGAAC 59.381 55.000 0.00 0.00 0.00 3.18
754 3807 2.669569 TGCAGCGAAGGAAGCACC 60.670 61.111 0.00 0.00 37.01 5.01
755 3808 3.435186 GCAGCGAAGGAAGCACCC 61.435 66.667 0.00 0.00 40.05 4.61
756 3809 2.032528 CAGCGAAGGAAGCACCCA 59.967 61.111 0.00 0.00 40.05 4.51
757 3810 2.032681 AGCGAAGGAAGCACCCAC 59.967 61.111 0.00 0.00 40.05 4.61
1065 4141 2.436292 GTCCTGCTGCTCCTGCTG 60.436 66.667 0.00 0.00 40.48 4.41
1090 4166 2.341101 GCCGTCTCCGTCTCTTCCA 61.341 63.158 0.00 0.00 0.00 3.53
1563 4645 6.000840 GGAGTTGAAGTTCTTGGATCTTTCT 58.999 40.000 4.17 0.00 0.00 2.52
1650 4732 2.033194 GTCCCGGAACCTTCTTGCG 61.033 63.158 0.73 0.00 0.00 4.85
1836 4918 0.526211 GGAATTGCTCGGGTTTGTCC 59.474 55.000 0.00 0.00 0.00 4.02
2049 5131 7.195374 AGGTAATTTACTTGCTGGAGTGATA 57.805 36.000 6.52 0.00 0.00 2.15
2201 5283 0.674895 GGCTCAATTCCAGCGTCTGT 60.675 55.000 6.19 0.00 37.81 3.41
2284 5366 0.529337 CATGTCCCGAGCTGTAGCAG 60.529 60.000 6.65 0.00 45.16 4.24
2286 5368 1.315981 TGTCCCGAGCTGTAGCAGAG 61.316 60.000 6.65 0.00 45.16 3.35
2380 5462 1.369625 CCGTCTTACATCCTTGCCAC 58.630 55.000 0.00 0.00 0.00 5.01
2456 5538 5.126061 ACAATAACTTCACTGGATCATTGGC 59.874 40.000 0.00 0.00 0.00 4.52
2559 5641 6.263842 TCACAGAAGAAATCAGCTCAAAATGT 59.736 34.615 0.00 0.00 0.00 2.71
2626 5708 1.885887 TGTTGCCTGCTAACATTGGTC 59.114 47.619 0.00 0.00 33.43 4.02
2668 5750 8.962884 AAAGATGGACATTAGCAAAAACTTTT 57.037 26.923 0.00 0.00 0.00 2.27
2673 5755 6.314896 TGGACATTAGCAAAAACTTTTTGGTG 59.685 34.615 29.38 20.04 39.97 4.17
2694 5776 3.575965 GGTCAAATACCTGCCAGTTTG 57.424 47.619 1.03 1.03 45.75 2.93
2700 5782 5.241506 TCAAATACCTGCCAGTTTGAAAGAG 59.758 40.000 6.53 0.00 37.56 2.85
2730 5812 4.393371 AGCTTGAAATTTCTCTCGTTAGCC 59.607 41.667 18.64 3.21 0.00 3.93
2744 5826 3.308595 TCGTTAGCCGCAAACAATATCAG 59.691 43.478 0.00 0.00 36.19 2.90
2772 5854 1.128809 TACCGTCCTCTTTGGGGCAA 61.129 55.000 0.00 0.00 36.20 4.52
2781 5863 1.824230 TCTTTGGGGCAATTGGAATCG 59.176 47.619 7.72 0.00 0.00 3.34
2923 6005 4.344102 CCGATCTTACCCCTTCAGTATCAA 59.656 45.833 0.00 0.00 0.00 2.57
2926 6011 5.630415 TCTTACCCCTTCAGTATCAATGG 57.370 43.478 0.00 0.00 0.00 3.16
3511 6596 5.076873 TGGAAAGGTTCATACAAGAAAGGG 58.923 41.667 0.00 0.00 0.00 3.95
3591 6676 5.514279 GCACTTGCATACCTTCATGATAAC 58.486 41.667 0.00 0.00 41.59 1.89
3657 6742 4.065088 TCTTGCTTGACAATGAGTACACC 58.935 43.478 0.00 0.00 37.72 4.16
3837 6922 6.963796 ACTGCTTGAACTTATTTCAGACAAG 58.036 36.000 0.00 0.00 45.22 3.16
3891 6976 5.716228 TGGAAATGGATTCAACATAGTTGCT 59.284 36.000 5.06 0.00 39.98 3.91
4087 7172 1.457831 AGGCCGCCCTCTTACTAGG 60.458 63.158 5.55 0.00 36.46 3.02
4173 7258 7.654022 TCCTGGAAGTTCATTTTGTTTAACT 57.346 32.000 5.01 0.00 33.72 2.24
4282 7367 7.113965 GTGAATGCACATAAAAGACAAGTTCTG 59.886 37.037 0.00 0.00 44.51 3.02
4283 7368 6.882610 ATGCACATAAAAGACAAGTTCTGA 57.117 33.333 0.00 0.00 33.46 3.27
4321 7406 3.058293 TGGTATTTTTGCTCAACTGCTCG 60.058 43.478 0.00 0.00 0.00 5.03
4468 7553 7.704472 TGCTTAATACAATTTTGGAAATAGGCG 59.296 33.333 0.00 0.00 28.50 5.52
4624 7709 2.906354 AGTGCACTCGAAACTTGAACT 58.094 42.857 15.25 0.00 0.00 3.01
4702 7787 4.626529 GCTAGACTGTTCTATGGCCCTTTT 60.627 45.833 0.00 0.00 33.66 2.27
4773 7858 2.076100 CAGAAAGCAACCGCAGTATCA 58.924 47.619 0.00 0.00 42.27 2.15
4988 8074 5.218885 TGGAAAACTATGAATGCACGTTTG 58.781 37.500 4.21 0.00 33.75 2.93
5136 8274 2.705658 GGTATCCATGTCATGTCCTCCA 59.294 50.000 11.84 0.00 0.00 3.86
5143 8281 2.259917 TGTCATGTCCTCCAGTCATGT 58.740 47.619 0.00 0.00 39.61 3.21
5149 8287 1.219124 CCTCCAGTCATGTGGTCGG 59.781 63.158 2.52 1.79 38.88 4.79
5226 8368 4.194720 CCGCTCGAAGGGACTCCG 62.195 72.222 0.00 0.00 37.75 4.63
5236 8378 1.219824 AGGGACTCCGAGGGGAAGTA 61.220 60.000 0.00 0.00 43.27 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 144 5.053145 CCTCTCATCCATACTAACTGCAAC 58.947 45.833 0.00 0.00 0.00 4.17
143 145 4.101585 CCCTCTCATCCATACTAACTGCAA 59.898 45.833 0.00 0.00 0.00 4.08
144 146 3.643320 CCCTCTCATCCATACTAACTGCA 59.357 47.826 0.00 0.00 0.00 4.41
172 174 6.544928 AAGTTGGAGTGGATGAAAAGTTTT 57.455 33.333 0.00 0.00 0.00 2.43
222 224 1.398390 GAGGATGTTTGATCGTGCACC 59.602 52.381 12.15 0.00 0.00 5.01
229 231 3.313526 CGGGATTGTGAGGATGTTTGATC 59.686 47.826 0.00 0.00 0.00 2.92
286 288 2.537639 CCAAACGCGGGAATAGAAAC 57.462 50.000 12.47 0.00 0.00 2.78
350 2203 8.877864 TTATGTTTAACATCTCAGTTCCCATT 57.122 30.769 14.29 0.00 39.88 3.16
351 2204 8.739972 GTTTATGTTTAACATCTCAGTTCCCAT 58.260 33.333 14.29 0.00 39.88 4.00
352 2205 7.942341 AGTTTATGTTTAACATCTCAGTTCCCA 59.058 33.333 14.29 0.00 39.88 4.37
353 2206 8.336801 AGTTTATGTTTAACATCTCAGTTCCC 57.663 34.615 14.29 0.00 39.88 3.97
405 2271 0.544357 TGGAACCACCGATCTGGAGT 60.544 55.000 7.95 3.80 42.00 3.85
406 2272 0.613260 TTGGAACCACCGATCTGGAG 59.387 55.000 7.95 1.64 42.00 3.86
407 2273 1.065491 CATTGGAACCACCGATCTGGA 60.065 52.381 7.95 0.00 40.58 3.86
408 2274 1.065491 TCATTGGAACCACCGATCTGG 60.065 52.381 0.00 0.00 40.58 3.86
409 2275 2.401583 TCATTGGAACCACCGATCTG 57.598 50.000 0.00 0.00 40.58 2.90
448 3499 2.091885 TGGATGGGGTTAAAGCAGGATC 60.092 50.000 0.00 0.00 0.00 3.36
453 3504 2.622977 GGATGTGGATGGGGTTAAAGCA 60.623 50.000 0.00 0.00 0.00 3.91
454 3505 2.031870 GGATGTGGATGGGGTTAAAGC 58.968 52.381 0.00 0.00 0.00 3.51
455 3506 2.024464 TGGGATGTGGATGGGGTTAAAG 60.024 50.000 0.00 0.00 0.00 1.85
456 3507 2.003830 TGGGATGTGGATGGGGTTAAA 58.996 47.619 0.00 0.00 0.00 1.52
615 3667 0.477597 TGGGATTGGAACAGGGAGGT 60.478 55.000 0.00 0.00 42.39 3.85
616 3668 0.704076 TTGGGATTGGAACAGGGAGG 59.296 55.000 0.00 0.00 42.39 4.30
617 3669 2.171003 GTTTGGGATTGGAACAGGGAG 58.829 52.381 0.00 0.00 42.39 4.30
618 3670 1.546773 CGTTTGGGATTGGAACAGGGA 60.547 52.381 0.00 0.00 42.39 4.20
619 3671 0.887933 CGTTTGGGATTGGAACAGGG 59.112 55.000 0.00 0.00 42.39 4.45
620 3672 1.904287 TCGTTTGGGATTGGAACAGG 58.096 50.000 0.00 0.00 42.39 4.00
621 3673 4.519540 AAATCGTTTGGGATTGGAACAG 57.480 40.909 0.00 0.00 42.39 3.16
622 3674 6.597832 ATTAAATCGTTTGGGATTGGAACA 57.402 33.333 0.00 0.00 36.77 3.18
623 3675 8.989653 TTTATTAAATCGTTTGGGATTGGAAC 57.010 30.769 0.00 0.00 36.77 3.62
680 3733 5.126067 CCCTCCACTGATAATTCGTTCATT 58.874 41.667 0.00 0.00 0.00 2.57
686 3739 1.140852 TGCCCCTCCACTGATAATTCG 59.859 52.381 0.00 0.00 0.00 3.34
753 3806 4.426313 GCTTCCCCTTCCGGTGGG 62.426 72.222 22.70 22.70 44.19 4.61
754 3807 4.778143 CGCTTCCCCTTCCGGTGG 62.778 72.222 0.00 5.20 0.00 4.61
755 3808 4.778143 CCGCTTCCCCTTCCGGTG 62.778 72.222 0.00 0.00 36.18 4.94
757 3810 4.162690 CTCCGCTTCCCCTTCCGG 62.163 72.222 0.00 0.00 41.97 5.14
1615 4697 2.159819 GACAGGTCGAGCTGCCTCAA 62.160 60.000 37.28 0.00 38.00 3.02
1749 4831 2.965716 AAACCCGCAGCTTGCTCAGT 62.966 55.000 6.58 0.00 42.25 3.41
1827 4909 0.531311 ACACGAGAACGGACAAACCC 60.531 55.000 0.00 0.00 44.46 4.11
1959 5041 0.033699 GGAGATTTCCTTGCAGGCCT 60.034 55.000 0.00 0.00 40.58 5.19
1966 5048 4.501071 CAATTGCTTGGGAGATTTCCTTG 58.499 43.478 1.74 0.00 43.49 3.61
2049 5131 4.075793 TGCCCTAGCTCCCTCGGT 62.076 66.667 0.00 0.00 40.80 4.69
2201 5283 1.264020 GCGATGCACACTCTTTGTTCA 59.736 47.619 0.00 0.00 35.67 3.18
2230 5312 0.812811 CCAGATGTCACGCCATCCAG 60.813 60.000 6.68 1.79 41.79 3.86
2284 5366 3.447586 TCACAGTAACCCAGTGATAGCTC 59.552 47.826 0.00 0.00 37.36 4.09
2286 5368 3.887621 TCACAGTAACCCAGTGATAGC 57.112 47.619 0.00 0.00 37.36 2.97
2293 5375 3.515502 TCTCCTGATTCACAGTAACCCAG 59.484 47.826 0.00 0.00 44.40 4.45
2343 5425 1.266989 CGGCCTCCAAACTTGTTCTTC 59.733 52.381 0.00 0.00 0.00 2.87
2380 5462 6.108687 TGTTTCCATATCTGTCTGCACTAAG 58.891 40.000 0.00 0.00 0.00 2.18
2548 5630 3.093814 TGATGGCATGACATTTTGAGCT 58.906 40.909 17.03 0.00 0.00 4.09
2559 5641 3.159213 ACCAAAACTCTGATGGCATGA 57.841 42.857 3.81 0.00 37.77 3.07
2626 5708 3.476552 TCTTTACAAGAGCACCCAACAG 58.523 45.455 0.00 0.00 32.71 3.16
2655 5737 4.223032 TGACCCACCAAAAAGTTTTTGCTA 59.777 37.500 28.19 10.90 0.00 3.49
2730 5812 3.684305 TCTGACCACTGATATTGTTTGCG 59.316 43.478 0.00 0.00 0.00 4.85
2744 5826 6.704394 CCAAAGAGGACGGTATCTGACCAC 62.704 54.167 0.00 0.00 44.79 4.16
2772 5854 2.514458 AAACCTCCAGCGATTCCAAT 57.486 45.000 0.00 0.00 0.00 3.16
2781 5863 4.744795 TGAGAGATCTAAAACCTCCAGC 57.255 45.455 0.00 0.00 0.00 4.85
2836 5918 3.019933 GAGACCTCTCAGTGTCACAAC 57.980 52.381 5.62 0.00 42.42 3.32
2923 6005 8.674263 TTGAATGAAATGTTAAAAACAGCCAT 57.326 26.923 0.00 0.14 45.95 4.40
3657 6742 4.963276 TCCAAAATCAGAAAGGTATGCG 57.037 40.909 0.00 0.00 0.00 4.73
3837 6922 2.948386 GGAAGGGTCCAGTGCTTTC 58.052 57.895 0.00 0.00 44.26 2.62
3891 6976 1.969085 CAGAAGCATGCAAGCCCAA 59.031 52.632 21.98 0.00 34.23 4.12
4087 7172 7.435488 ACGTATGTCATACTAGAGTTGCAAATC 59.565 37.037 18.80 18.80 33.59 2.17
4173 7258 9.033711 TCATATCCATCAATTTTTGGTTGAGAA 57.966 29.630 3.87 0.00 38.81 2.87
4321 7406 9.796062 CAACATAAATTAACAGCATTCAAACAC 57.204 29.630 0.00 0.00 0.00 3.32
4392 7477 5.963865 ACCAAACAATTTAATAGGGGCAGAT 59.036 36.000 0.00 0.00 0.00 2.90
4468 7553 6.763610 ACATACTTCTACCAGAAAGCTATTGC 59.236 38.462 0.00 0.00 33.19 3.56
4515 7600 2.840038 TGGTACAGCCTCTCACATCAAT 59.160 45.455 0.00 0.00 38.35 2.57
4624 7709 5.472137 GGTTGCTAGTGATCACCAGTTTTAA 59.528 40.000 22.21 9.56 0.00 1.52
4678 7763 1.762957 GGGCCATAGAACAGTCTAGCA 59.237 52.381 4.39 0.00 39.75 3.49
4773 7858 3.713764 AGGATCAACGAATTCATCCCTCT 59.286 43.478 15.51 0.00 36.22 3.69
4988 8074 7.130269 GTGTGCCGAATAAATAAACCTATCAC 58.870 38.462 0.00 0.00 0.00 3.06
5006 8092 0.382873 CATGGATTCATGGTGTGCCG 59.617 55.000 6.03 0.00 45.19 5.69
5159 8297 4.096833 GCAGTAATCCAATCTTGCACATGA 59.903 41.667 0.00 0.00 0.00 3.07
5226 8368 1.153549 CGCAGCAGTACTTCCCCTC 60.154 63.158 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.