Multiple sequence alignment - TraesCS5D01G402600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G402600 chr5D 100.000 6018 0 0 1 6018 468346273 468352290 0.000000e+00 11114.0
1 TraesCS5D01G402600 chr5D 84.311 1262 122 41 2564 3820 468181999 468183189 0.000000e+00 1164.0
2 TraesCS5D01G402600 chr5D 96.515 373 9 1 1 373 468185987 468185619 1.110000e-171 614.0
3 TraesCS5D01G402600 chr5D 84.828 435 50 7 4260 4691 468184576 468184997 2.010000e-114 424.0
4 TraesCS5D01G402600 chr5D 84.848 330 26 15 3929 4238 468183783 468184108 1.630000e-80 311.0
5 TraesCS5D01G402600 chr5D 83.389 301 34 11 1687 1982 468177610 468177899 1.290000e-66 265.0
6 TraesCS5D01G402600 chr5D 78.880 393 69 12 5626 6010 520862286 520862672 2.780000e-63 254.0
7 TraesCS5D01G402600 chr5D 90.000 60 6 0 1148 1207 468176762 468176821 1.800000e-10 78.7
8 TraesCS5D01G402600 chr5A 92.278 2577 144 30 1733 4267 588758648 588761211 0.000000e+00 3605.0
9 TraesCS5D01G402600 chr5A 84.475 1256 119 40 2564 3814 588742528 588743712 0.000000e+00 1170.0
10 TraesCS5D01G402600 chr5A 92.593 756 48 4 4271 5020 588761279 588762032 0.000000e+00 1079.0
11 TraesCS5D01G402600 chr5A 87.246 737 51 20 1027 1731 588756476 588757201 0.000000e+00 800.0
12 TraesCS5D01G402600 chr5A 92.110 545 27 5 399 936 588755892 588756427 0.000000e+00 754.0
13 TraesCS5D01G402600 chr5A 82.243 749 105 12 4257 4990 588745115 588745850 6.620000e-174 621.0
14 TraesCS5D01G402600 chr5A 82.062 747 95 22 5281 6012 588762173 588762895 8.630000e-168 601.0
15 TraesCS5D01G402600 chr5A 79.953 429 62 16 1676 2096 588741305 588741717 1.640000e-75 294.0
16 TraesCS5D01G402600 chr5A 91.878 197 12 3 4043 4238 588744452 588744645 7.690000e-69 272.0
17 TraesCS5D01G402600 chr5A 80.427 281 43 8 1687 1963 604428774 604429046 2.840000e-48 204.0
18 TraesCS5D01G402600 chr5A 94.286 105 6 0 3929 4033 588744312 588744416 1.740000e-35 161.0
19 TraesCS5D01G402600 chr5A 86.567 67 9 0 1141 1207 588740445 588740511 2.330000e-09 75.0
20 TraesCS5D01G402600 chr5B 89.368 2483 153 56 1236 3648 575058330 575060771 0.000000e+00 3020.0
21 TraesCS5D01G402600 chr5B 93.512 894 35 11 4269 5142 575061787 575062677 0.000000e+00 1308.0
22 TraesCS5D01G402600 chr5B 83.690 1263 131 40 2564 3820 575052565 575053758 0.000000e+00 1122.0
23 TraesCS5D01G402600 chr5B 90.240 666 56 4 5355 6015 575063418 575064079 0.000000e+00 861.0
24 TraesCS5D01G402600 chr5B 93.261 371 21 4 3901 4267 575061350 575061720 1.480000e-150 544.0
25 TraesCS5D01G402600 chr5B 90.368 353 18 5 864 1211 575057921 575058262 3.310000e-122 449.0
26 TraesCS5D01G402600 chr5B 84.404 436 49 9 4259 4691 575055439 575055858 1.560000e-110 411.0
27 TraesCS5D01G402600 chr5B 81.596 451 31 19 385 821 575057424 575057836 5.820000e-85 326.0
28 TraesCS5D01G402600 chr5B 83.245 376 24 23 3892 4238 575054630 575054995 5.860000e-80 309.0
29 TraesCS5D01G402600 chr5B 82.596 339 52 7 5675 6010 684618923 684619257 5.900000e-75 292.0
30 TraesCS5D01G402600 chr5B 83.548 310 43 6 1676 1982 575050900 575051204 3.550000e-72 283.0
31 TraesCS5D01G402600 chr5B 85.317 252 27 4 3653 3895 575060686 575060936 1.000000e-62 252.0
32 TraesCS5D01G402600 chr5B 90.000 60 6 0 1148 1207 575050056 575050115 1.800000e-10 78.7
33 TraesCS5D01G402600 chr4D 96.961 362 7 1 1 362 318748155 318748512 6.670000e-169 604.0
34 TraesCS5D01G402600 chr7A 88.630 387 14 14 1 362 734250738 734251119 1.540000e-120 444.0
35 TraesCS5D01G402600 chr7A 80.101 397 46 19 1 373 730730694 730730307 1.290000e-66 265.0
36 TraesCS5D01G402600 chr7A 80.667 300 40 10 1687 1980 245727035 245727322 3.650000e-52 217.0
37 TraesCS5D01G402600 chr7A 93.388 121 8 0 2130 2250 245727541 245727661 4.790000e-41 180.0
38 TraesCS5D01G402600 chr2A 86.902 397 15 15 4 373 565156955 565156569 1.560000e-110 411.0
39 TraesCS5D01G402600 chr2A 79.487 429 70 13 5591 6009 707557006 707557426 7.630000e-74 289.0
40 TraesCS5D01G402600 chr3B 82.514 366 55 8 5646 6005 89699557 89699919 4.530000e-81 313.0
41 TraesCS5D01G402600 chr3B 100.000 29 0 0 357 385 13618022 13617994 3.000000e-03 54.7
42 TraesCS5D01G402600 chr4A 80.905 398 43 15 1 373 681109679 681110068 3.550000e-72 283.0
43 TraesCS5D01G402600 chr1B 80.905 398 43 15 1 373 161582362 161582751 3.550000e-72 283.0
44 TraesCS5D01G402600 chr2B 83.224 304 41 10 5712 6010 286977169 286977467 2.760000e-68 270.0
45 TraesCS5D01G402600 chr2B 81.579 114 19 2 260 372 244789571 244789459 6.420000e-15 93.5
46 TraesCS5D01G402600 chr3D 83.032 277 41 6 5673 5946 32383673 32383400 4.660000e-61 246.0
47 TraesCS5D01G402600 chr2D 81.433 307 44 12 5712 6010 262457362 262457061 7.800000e-59 239.0
48 TraesCS5D01G402600 chr2D 77.419 124 24 4 261 380 52501541 52501664 3.010000e-08 71.3
49 TraesCS5D01G402600 chr7D 77.212 452 67 23 1687 2126 276972803 276973230 1.300000e-56 231.0
50 TraesCS5D01G402600 chr7D 100.000 29 0 0 5497 5525 38179574 38179602 3.000000e-03 54.7
51 TraesCS5D01G402600 chr6D 78.947 342 50 13 1791 2126 252750436 252750111 4.720000e-51 213.0
52 TraesCS5D01G402600 chr3A 100.000 28 0 0 5541 5568 652017101 652017128 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G402600 chr5D 468346273 468352290 6017 False 11114.000000 11114 100.000000 1 6018 1 chr5D.!!$F1 6017
1 TraesCS5D01G402600 chr5D 468181999 468184997 2998 False 633.000000 1164 84.662333 2564 4691 3 chr5D.!!$F4 2127
2 TraesCS5D01G402600 chr5A 588755892 588762895 7003 False 1367.800000 3605 89.257800 399 6012 5 chr5A.!!$F3 5613
3 TraesCS5D01G402600 chr5A 588740445 588745850 5405 False 432.166667 1170 86.567000 1141 4990 6 chr5A.!!$F2 3849
4 TraesCS5D01G402600 chr5B 575050056 575064079 14023 False 746.975000 3020 87.379083 385 6015 12 chr5B.!!$F2 5630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 389 0.033011 AGACCTAGACAGACCCGCAT 60.033 55.000 0.00 0.00 0.00 4.73 F
1402 8534 0.389948 ATGCACGAGAGAACGGGTTC 60.390 55.000 3.37 3.37 39.03 3.62 F
2377 11354 0.972134 TGACCAGAACAGGAGAGCTG 59.028 55.000 0.00 0.00 0.00 4.24 F
3135 12378 1.404391 CTCAATGCTGCATCAACCCTC 59.596 52.381 16.55 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 8926 1.066787 GCTCACCACCACTTAGTCCTC 60.067 57.143 0.00 0.0 0.00 3.71 R
3340 12601 0.034089 AACAGAGGTGCCCCTTATGC 60.034 55.000 0.00 0.0 42.86 3.14 R
3418 12679 1.028330 ACCGATGAGCCAACTGCATG 61.028 55.000 0.00 0.0 44.83 4.06 R
5033 15439 0.036294 GCTTAACTGCGGGGAAGAGT 60.036 55.000 11.72 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.712122 AAAGGAAACAAGCAGAAACGAA 57.288 36.364 0.00 0.00 0.00 3.85
40 41 3.692791 AGGAAACAAGCAGAAACGAAC 57.307 42.857 0.00 0.00 0.00 3.95
41 42 3.013921 AGGAAACAAGCAGAAACGAACA 58.986 40.909 0.00 0.00 0.00 3.18
42 43 3.442273 AGGAAACAAGCAGAAACGAACAA 59.558 39.130 0.00 0.00 0.00 2.83
44 45 4.623595 GGAAACAAGCAGAAACGAACAAAA 59.376 37.500 0.00 0.00 0.00 2.44
45 46 5.119434 GGAAACAAGCAGAAACGAACAAAAA 59.881 36.000 0.00 0.00 0.00 1.94
66 67 6.894339 AAAAACTAGACATGGGAAAATCGT 57.106 33.333 0.00 0.00 0.00 3.73
67 68 7.989416 AAAAACTAGACATGGGAAAATCGTA 57.011 32.000 0.00 0.00 0.00 3.43
69 70 5.670792 ACTAGACATGGGAAAATCGTACA 57.329 39.130 0.00 0.00 0.00 2.90
70 71 6.045072 ACTAGACATGGGAAAATCGTACAA 57.955 37.500 0.00 0.00 0.00 2.41
72 73 5.880054 AGACATGGGAAAATCGTACAAAG 57.120 39.130 0.00 0.00 0.00 2.77
73 74 5.556915 AGACATGGGAAAATCGTACAAAGA 58.443 37.500 0.00 0.00 0.00 2.52
74 75 5.411669 AGACATGGGAAAATCGTACAAAGAC 59.588 40.000 0.00 0.00 0.00 3.01
75 76 4.457949 ACATGGGAAAATCGTACAAAGACC 59.542 41.667 0.00 0.00 0.00 3.85
76 77 4.360951 TGGGAAAATCGTACAAAGACCT 57.639 40.909 0.00 0.00 0.00 3.85
77 78 5.486735 TGGGAAAATCGTACAAAGACCTA 57.513 39.130 0.00 0.00 0.00 3.08
78 79 5.867330 TGGGAAAATCGTACAAAGACCTAA 58.133 37.500 0.00 0.00 0.00 2.69
79 80 5.702209 TGGGAAAATCGTACAAAGACCTAAC 59.298 40.000 0.00 0.00 0.00 2.34
80 81 5.163923 GGGAAAATCGTACAAAGACCTAACG 60.164 44.000 0.00 0.00 34.99 3.18
81 82 5.163923 GGAAAATCGTACAAAGACCTAACGG 60.164 44.000 0.00 0.00 34.47 4.44
83 84 5.643379 AATCGTACAAAGACCTAACGGTA 57.357 39.130 0.00 0.00 45.73 4.02
84 85 4.685169 TCGTACAAAGACCTAACGGTAG 57.315 45.455 0.00 0.00 45.73 3.18
93 94 1.772836 CCTAACGGTAGGCTAGTGGT 58.227 55.000 14.94 0.00 40.69 4.16
94 95 1.407979 CCTAACGGTAGGCTAGTGGTG 59.592 57.143 14.94 0.00 40.69 4.17
95 96 0.819582 TAACGGTAGGCTAGTGGTGC 59.180 55.000 0.00 0.00 0.00 5.01
96 97 2.104331 CGGTAGGCTAGTGGTGCG 59.896 66.667 0.00 0.00 0.00 5.34
97 98 2.202892 GGTAGGCTAGTGGTGCGC 60.203 66.667 0.00 0.00 0.00 6.09
98 99 2.722201 GGTAGGCTAGTGGTGCGCT 61.722 63.158 9.73 0.00 0.00 5.92
99 100 1.218316 GTAGGCTAGTGGTGCGCTT 59.782 57.895 9.73 0.00 0.00 4.68
101 102 1.254975 TAGGCTAGTGGTGCGCTTCA 61.255 55.000 9.73 3.74 0.00 3.02
102 103 1.671054 GGCTAGTGGTGCGCTTCAA 60.671 57.895 9.73 0.00 0.00 2.69
104 105 0.670546 GCTAGTGGTGCGCTTCAAGA 60.671 55.000 9.73 0.00 0.00 3.02
105 106 1.795768 CTAGTGGTGCGCTTCAAGAA 58.204 50.000 9.73 0.00 0.00 2.52
106 107 1.728971 CTAGTGGTGCGCTTCAAGAAG 59.271 52.381 9.73 5.46 41.24 2.85
107 108 0.106708 AGTGGTGCGCTTCAAGAAGA 59.893 50.000 9.73 0.00 40.79 2.87
108 109 0.944386 GTGGTGCGCTTCAAGAAGAA 59.056 50.000 9.73 0.00 40.79 2.52
109 110 1.537202 GTGGTGCGCTTCAAGAAGAAT 59.463 47.619 9.73 0.00 40.79 2.40
111 112 3.188460 GTGGTGCGCTTCAAGAAGAATTA 59.812 43.478 9.73 0.00 40.79 1.40
112 113 3.436704 TGGTGCGCTTCAAGAAGAATTAG 59.563 43.478 9.73 0.90 40.79 1.73
114 115 2.094258 TGCGCTTCAAGAAGAATTAGCG 59.906 45.455 9.73 10.10 45.61 4.26
117 118 2.223363 GCTTCAAGAAGAATTAGCGCCC 60.223 50.000 13.70 0.00 40.79 6.13
118 119 2.779755 TCAAGAAGAATTAGCGCCCA 57.220 45.000 2.29 0.00 0.00 5.36
120 121 2.236146 TCAAGAAGAATTAGCGCCCAGA 59.764 45.455 2.29 0.00 0.00 3.86
122 123 3.350219 AGAAGAATTAGCGCCCAGAAA 57.650 42.857 2.29 0.00 0.00 2.52
123 124 3.686016 AGAAGAATTAGCGCCCAGAAAA 58.314 40.909 2.29 0.00 0.00 2.29
125 126 4.706962 AGAAGAATTAGCGCCCAGAAAAAT 59.293 37.500 2.29 0.00 0.00 1.82
126 127 4.639135 AGAATTAGCGCCCAGAAAAATC 57.361 40.909 2.29 0.00 0.00 2.17
127 128 4.016444 AGAATTAGCGCCCAGAAAAATCA 58.984 39.130 2.29 0.00 0.00 2.57
129 130 1.083489 TAGCGCCCAGAAAAATCACG 58.917 50.000 2.29 0.00 0.00 4.35
130 131 0.605319 AGCGCCCAGAAAAATCACGA 60.605 50.000 2.29 0.00 0.00 4.35
131 132 0.179189 GCGCCCAGAAAAATCACGAG 60.179 55.000 0.00 0.00 0.00 4.18
132 133 0.447801 CGCCCAGAAAAATCACGAGG 59.552 55.000 0.00 0.00 0.00 4.63
133 134 0.171231 GCCCAGAAAAATCACGAGGC 59.829 55.000 0.00 0.00 0.00 4.70
134 135 1.533625 CCCAGAAAAATCACGAGGCA 58.466 50.000 0.00 0.00 0.00 4.75
135 136 1.885887 CCCAGAAAAATCACGAGGCAA 59.114 47.619 0.00 0.00 0.00 4.52
136 137 2.493278 CCCAGAAAAATCACGAGGCAAT 59.507 45.455 0.00 0.00 0.00 3.56
137 138 3.056607 CCCAGAAAAATCACGAGGCAATT 60.057 43.478 0.00 0.00 0.00 2.32
138 139 3.922240 CCAGAAAAATCACGAGGCAATTG 59.078 43.478 0.00 0.00 0.00 2.32
139 140 4.321156 CCAGAAAAATCACGAGGCAATTGA 60.321 41.667 10.34 0.00 0.00 2.57
140 141 5.221880 CAGAAAAATCACGAGGCAATTGAA 58.778 37.500 10.34 0.00 0.00 2.69
141 142 5.691305 CAGAAAAATCACGAGGCAATTGAAA 59.309 36.000 10.34 0.00 0.00 2.69
144 145 6.710692 AAAATCACGAGGCAATTGAAAATC 57.289 33.333 10.34 0.00 0.00 2.17
145 146 5.649782 AATCACGAGGCAATTGAAAATCT 57.350 34.783 10.34 0.00 0.00 2.40
146 147 4.424061 TCACGAGGCAATTGAAAATCTG 57.576 40.909 10.34 0.00 0.00 2.90
147 148 2.919229 CACGAGGCAATTGAAAATCTGC 59.081 45.455 10.34 0.00 0.00 4.26
150 151 3.612241 CGAGGCAATTGAAAATCTGCACA 60.612 43.478 10.34 0.00 36.50 4.57
151 152 4.501071 GAGGCAATTGAAAATCTGCACAT 58.499 39.130 10.34 0.00 36.50 3.21
152 153 4.901868 AGGCAATTGAAAATCTGCACATT 58.098 34.783 10.34 0.00 36.50 2.71
155 156 6.263617 AGGCAATTGAAAATCTGCACATTTTT 59.736 30.769 13.03 5.39 36.33 1.94
160 161 7.467557 TTGAAAATCTGCACATTTTTGTCTC 57.532 32.000 13.03 2.47 36.33 3.36
162 163 7.939782 TGAAAATCTGCACATTTTTGTCTCTA 58.060 30.769 13.03 0.00 36.33 2.43
163 164 8.579006 TGAAAATCTGCACATTTTTGTCTCTAT 58.421 29.630 13.03 0.00 36.33 1.98
164 165 8.976986 AAAATCTGCACATTTTTGTCTCTATC 57.023 30.769 6.83 0.00 33.02 2.08
165 166 7.692460 AATCTGCACATTTTTGTCTCTATCA 57.308 32.000 0.00 0.00 0.00 2.15
166 167 6.486253 TCTGCACATTTTTGTCTCTATCAC 57.514 37.500 0.00 0.00 0.00 3.06
167 168 5.120674 TCTGCACATTTTTGTCTCTATCACG 59.879 40.000 0.00 0.00 0.00 4.35
168 169 4.154015 TGCACATTTTTGTCTCTATCACGG 59.846 41.667 0.00 0.00 0.00 4.94
169 170 4.437390 GCACATTTTTGTCTCTATCACGGG 60.437 45.833 0.00 0.00 0.00 5.28
170 171 3.689649 ACATTTTTGTCTCTATCACGGGC 59.310 43.478 0.00 0.00 0.00 6.13
171 172 3.695830 TTTTTGTCTCTATCACGGGCT 57.304 42.857 0.00 0.00 0.00 5.19
172 173 3.695830 TTTTGTCTCTATCACGGGCTT 57.304 42.857 0.00 0.00 0.00 4.35
173 174 2.672961 TTGTCTCTATCACGGGCTTG 57.327 50.000 0.00 0.00 0.00 4.01
174 175 1.557099 TGTCTCTATCACGGGCTTGT 58.443 50.000 0.00 0.00 0.00 3.16
175 176 2.730382 TGTCTCTATCACGGGCTTGTA 58.270 47.619 0.00 0.00 0.00 2.41
176 177 2.426024 TGTCTCTATCACGGGCTTGTAC 59.574 50.000 0.00 0.00 0.00 2.90
177 178 2.688958 GTCTCTATCACGGGCTTGTACT 59.311 50.000 0.00 0.00 0.00 2.73
179 180 3.767673 TCTCTATCACGGGCTTGTACTTT 59.232 43.478 0.00 0.00 0.00 2.66
180 181 4.222145 TCTCTATCACGGGCTTGTACTTTT 59.778 41.667 0.00 0.00 0.00 2.27
201 202 5.867903 TTTTGTTCAACATCCTTCCATGT 57.132 34.783 0.00 0.00 38.74 3.21
202 203 4.852134 TTGTTCAACATCCTTCCATGTG 57.148 40.909 0.00 0.00 37.07 3.21
203 204 3.831323 TGTTCAACATCCTTCCATGTGT 58.169 40.909 0.00 0.00 37.07 3.72
204 205 3.569277 TGTTCAACATCCTTCCATGTGTG 59.431 43.478 0.00 0.00 37.07 3.82
205 206 3.507162 TCAACATCCTTCCATGTGTGT 57.493 42.857 0.00 0.00 37.07 3.72
206 207 3.148412 TCAACATCCTTCCATGTGTGTG 58.852 45.455 0.00 0.00 37.07 3.82
207 208 2.886523 CAACATCCTTCCATGTGTGTGT 59.113 45.455 0.00 0.00 37.07 3.72
208 209 4.071423 CAACATCCTTCCATGTGTGTGTA 58.929 43.478 0.00 0.00 37.07 2.90
209 210 4.574674 ACATCCTTCCATGTGTGTGTAT 57.425 40.909 0.00 0.00 35.57 2.29
210 211 5.692115 ACATCCTTCCATGTGTGTGTATA 57.308 39.130 0.00 0.00 35.57 1.47
211 212 6.061022 ACATCCTTCCATGTGTGTGTATAA 57.939 37.500 0.00 0.00 35.57 0.98
212 213 6.480763 ACATCCTTCCATGTGTGTGTATAAA 58.519 36.000 0.00 0.00 35.57 1.40
213 214 6.945435 ACATCCTTCCATGTGTGTGTATAAAA 59.055 34.615 0.00 0.00 35.57 1.52
214 215 6.811253 TCCTTCCATGTGTGTGTATAAAAC 57.189 37.500 0.00 0.00 0.00 2.43
215 216 6.299922 TCCTTCCATGTGTGTGTATAAAACA 58.700 36.000 0.00 0.00 35.06 2.83
216 217 6.773200 TCCTTCCATGTGTGTGTATAAAACAA 59.227 34.615 0.00 0.00 40.63 2.83
217 218 7.285629 TCCTTCCATGTGTGTGTATAAAACAAA 59.714 33.333 0.00 0.00 40.63 2.83
218 219 8.087750 CCTTCCATGTGTGTGTATAAAACAAAT 58.912 33.333 0.00 0.00 40.63 2.32
219 220 9.474920 CTTCCATGTGTGTGTATAAAACAAATT 57.525 29.630 0.00 0.00 40.63 1.82
247 248 5.408880 GGAAATTTCCCGGTCCAAATAAA 57.591 39.130 24.44 0.00 41.62 1.40
248 249 5.172934 GGAAATTTCCCGGTCCAAATAAAC 58.827 41.667 24.44 0.00 41.62 2.01
249 250 5.279556 GGAAATTTCCCGGTCCAAATAAACA 60.280 40.000 24.44 0.00 41.62 2.83
250 251 5.810080 AATTTCCCGGTCCAAATAAACAA 57.190 34.783 0.00 0.00 0.00 2.83
252 253 5.609533 TTTCCCGGTCCAAATAAACAAAA 57.390 34.783 0.00 0.00 0.00 2.44
255 256 4.404715 TCCCGGTCCAAATAAACAAAAACA 59.595 37.500 0.00 0.00 0.00 2.83
257 258 5.585047 CCCGGTCCAAATAAACAAAAACAAA 59.415 36.000 0.00 0.00 0.00 2.83
258 259 6.457122 CCCGGTCCAAATAAACAAAAACAAAC 60.457 38.462 0.00 0.00 0.00 2.93
259 260 6.092259 CCGGTCCAAATAAACAAAAACAAACA 59.908 34.615 0.00 0.00 0.00 2.83
260 261 7.360946 CCGGTCCAAATAAACAAAAACAAACAA 60.361 33.333 0.00 0.00 0.00 2.83
261 262 8.015658 CGGTCCAAATAAACAAAAACAAACAAA 58.984 29.630 0.00 0.00 0.00 2.83
262 263 9.119329 GGTCCAAATAAACAAAAACAAACAAAC 57.881 29.630 0.00 0.00 0.00 2.93
275 276 7.977490 AAACAAACAAACAAACAAACAAAGG 57.023 28.000 0.00 0.00 0.00 3.11
276 277 6.066054 ACAAACAAACAAACAAACAAAGGG 57.934 33.333 0.00 0.00 0.00 3.95
277 278 5.823045 ACAAACAAACAAACAAACAAAGGGA 59.177 32.000 0.00 0.00 0.00 4.20
278 279 6.318900 ACAAACAAACAAACAAACAAAGGGAA 59.681 30.769 0.00 0.00 0.00 3.97
279 280 5.933187 ACAAACAAACAAACAAAGGGAAC 57.067 34.783 0.00 0.00 0.00 3.62
280 281 5.368989 ACAAACAAACAAACAAAGGGAACA 58.631 33.333 0.00 0.00 0.00 3.18
281 282 5.823045 ACAAACAAACAAACAAAGGGAACAA 59.177 32.000 0.00 0.00 0.00 2.83
283 284 4.574892 ACAAACAAACAAAGGGAACAAGG 58.425 39.130 0.00 0.00 0.00 3.61
284 285 4.284746 ACAAACAAACAAAGGGAACAAGGA 59.715 37.500 0.00 0.00 0.00 3.36
285 286 5.221742 ACAAACAAACAAAGGGAACAAGGAA 60.222 36.000 0.00 0.00 0.00 3.36
287 288 5.084818 ACAAACAAAGGGAACAAGGAAAG 57.915 39.130 0.00 0.00 0.00 2.62
288 289 3.819564 AACAAAGGGAACAAGGAAAGC 57.180 42.857 0.00 0.00 0.00 3.51
289 290 2.039418 ACAAAGGGAACAAGGAAAGCC 58.961 47.619 0.00 0.00 0.00 4.35
290 291 1.344438 CAAAGGGAACAAGGAAAGCCC 59.656 52.381 0.00 0.00 39.12 5.19
291 292 0.560688 AAGGGAACAAGGAAAGCCCA 59.439 50.000 0.00 0.00 41.34 5.36
292 293 0.178961 AGGGAACAAGGAAAGCCCAC 60.179 55.000 0.00 0.00 41.34 4.61
293 294 0.469144 GGGAACAAGGAAAGCCCACA 60.469 55.000 0.00 0.00 38.68 4.17
294 295 1.408969 GGAACAAGGAAAGCCCACAA 58.591 50.000 0.00 0.00 37.41 3.33
295 296 1.760029 GGAACAAGGAAAGCCCACAAA 59.240 47.619 0.00 0.00 37.41 2.83
296 297 2.368548 GGAACAAGGAAAGCCCACAAAT 59.631 45.455 0.00 0.00 37.41 2.32
297 298 3.554960 GGAACAAGGAAAGCCCACAAATC 60.555 47.826 0.00 0.00 37.41 2.17
298 299 1.613437 ACAAGGAAAGCCCACAAATCG 59.387 47.619 0.00 0.00 37.41 3.34
299 300 1.067635 CAAGGAAAGCCCACAAATCGG 60.068 52.381 0.00 0.00 37.41 4.18
305 306 4.664062 CCCACAAATCGGGCTGAT 57.336 55.556 2.10 2.10 36.72 2.90
306 307 3.798794 CCCACAAATCGGGCTGATA 57.201 52.632 9.70 0.00 36.72 2.15
307 308 1.308998 CCCACAAATCGGGCTGATAC 58.691 55.000 9.70 0.00 36.72 2.24
308 309 1.408127 CCCACAAATCGGGCTGATACA 60.408 52.381 9.70 0.00 36.72 2.29
323 324 0.541392 ATACAGCCCATCAGACGCAA 59.459 50.000 0.00 0.00 0.00 4.85
338 339 0.109132 CGCAAGTCAAGAAATGGGCC 60.109 55.000 0.00 0.00 0.00 5.80
339 340 1.260544 GCAAGTCAAGAAATGGGCCT 58.739 50.000 4.53 0.00 0.00 5.19
340 341 2.446435 GCAAGTCAAGAAATGGGCCTA 58.554 47.619 4.53 0.00 0.00 3.93
341 342 2.825532 GCAAGTCAAGAAATGGGCCTAA 59.174 45.455 4.53 0.00 0.00 2.69
342 343 3.448660 GCAAGTCAAGAAATGGGCCTAAT 59.551 43.478 4.53 0.00 0.00 1.73
343 344 4.440663 GCAAGTCAAGAAATGGGCCTAATC 60.441 45.833 4.53 0.00 0.00 1.75
344 345 4.870021 AGTCAAGAAATGGGCCTAATCT 57.130 40.909 4.53 1.79 0.00 2.40
345 346 5.975988 AGTCAAGAAATGGGCCTAATCTA 57.024 39.130 4.53 0.00 0.00 1.98
346 347 5.685728 AGTCAAGAAATGGGCCTAATCTAC 58.314 41.667 4.53 1.60 0.00 2.59
347 348 5.430089 AGTCAAGAAATGGGCCTAATCTACT 59.570 40.000 4.53 3.96 0.00 2.57
348 349 6.069381 AGTCAAGAAATGGGCCTAATCTACTT 60.069 38.462 4.53 0.00 0.00 2.24
350 351 7.773690 GTCAAGAAATGGGCCTAATCTACTTTA 59.226 37.037 4.53 0.00 0.00 1.85
351 352 7.993183 TCAAGAAATGGGCCTAATCTACTTTAG 59.007 37.037 4.53 0.00 0.00 1.85
353 354 6.390165 AGAAATGGGCCTAATCTACTTTAGGT 59.610 38.462 4.53 0.00 46.71 3.08
355 356 4.627015 TGGGCCTAATCTACTTTAGGTGA 58.373 43.478 4.53 0.00 46.71 4.02
358 359 5.071923 GGGCCTAATCTACTTTAGGTGACAT 59.928 44.000 0.84 0.00 46.71 3.06
361 362 6.926272 GCCTAATCTACTTTAGGTGACATCAG 59.074 42.308 10.94 0.00 46.71 2.90
362 363 7.418025 GCCTAATCTACTTTAGGTGACATCAGT 60.418 40.741 10.94 0.00 46.71 3.41
363 364 8.138712 CCTAATCTACTTTAGGTGACATCAGTC 58.861 40.741 2.70 0.00 42.19 3.51
379 380 2.701107 CAGTCGACTGAGACCTAGACA 58.299 52.381 36.73 0.00 46.59 3.41
380 381 2.675844 CAGTCGACTGAGACCTAGACAG 59.324 54.545 36.73 7.99 46.59 3.51
381 382 2.568062 AGTCGACTGAGACCTAGACAGA 59.432 50.000 19.30 0.00 41.83 3.41
382 383 2.674357 GTCGACTGAGACCTAGACAGAC 59.326 54.545 8.70 0.00 35.22 3.51
384 385 2.371306 GACTGAGACCTAGACAGACCC 58.629 57.143 0.00 0.00 35.85 4.46
388 389 0.033011 AGACCTAGACAGACCCGCAT 60.033 55.000 0.00 0.00 0.00 4.73
394 7379 4.652421 ACCTAGACAGACCCGCATAAATAA 59.348 41.667 0.00 0.00 0.00 1.40
446 7431 3.849911 TCAGTTTCTCTGATTACTGGCG 58.150 45.455 11.53 0.00 46.77 5.69
451 7436 5.128827 AGTTTCTCTGATTACTGGCGGATAA 59.871 40.000 0.00 0.00 0.00 1.75
453 7438 5.808366 TCTCTGATTACTGGCGGATAATT 57.192 39.130 0.00 0.00 0.00 1.40
455 7440 7.297936 TCTCTGATTACTGGCGGATAATTAA 57.702 36.000 0.00 0.00 0.00 1.40
456 7441 7.152645 TCTCTGATTACTGGCGGATAATTAAC 58.847 38.462 0.00 0.00 0.00 2.01
458 7443 7.450074 TCTGATTACTGGCGGATAATTAACAT 58.550 34.615 0.00 0.00 0.00 2.71
459 7444 7.387673 TCTGATTACTGGCGGATAATTAACATG 59.612 37.037 0.00 0.00 0.00 3.21
460 7445 6.429692 TGATTACTGGCGGATAATTAACATGG 59.570 38.462 0.00 0.00 0.00 3.66
594 7593 4.996434 GCTGCCACGAGTGTGCCT 62.996 66.667 11.94 0.00 45.04 4.75
742 7741 2.842188 TACTAGGTTGGGCGCGGAGA 62.842 60.000 8.83 0.00 0.00 3.71
831 7831 3.763360 TCCACCACAAAAGAATATGCCAG 59.237 43.478 0.00 0.00 0.00 4.85
833 7833 4.380867 CCACCACAAAAGAATATGCCAGAC 60.381 45.833 0.00 0.00 0.00 3.51
839 7839 5.240623 ACAAAAGAATATGCCAGACGTGAAA 59.759 36.000 0.00 0.00 0.00 2.69
914 7961 0.812412 GGCGGTATAAAAGGCGCAGA 60.812 55.000 10.83 0.00 0.00 4.26
938 7985 0.959372 TCTCGTCGTCTTCCCACTCC 60.959 60.000 0.00 0.00 0.00 3.85
1111 8158 1.279271 CATCCGTTTCCAGTTCCTCCT 59.721 52.381 0.00 0.00 0.00 3.69
1117 8164 0.903454 TTCCAGTTCCTCCTCCGTCC 60.903 60.000 0.00 0.00 0.00 4.79
1121 8168 0.966370 AGTTCCTCCTCCGTCCTTCG 60.966 60.000 0.00 0.00 39.52 3.79
1134 8181 0.836400 TCCTTCGGTTTCTGAGGCCT 60.836 55.000 3.86 3.86 0.00 5.19
1207 8254 2.030562 AGCAACGTCCAGGTTCGG 59.969 61.111 10.49 0.00 0.00 4.30
1233 8340 3.385111 CCCTATCCGTTTCTTCAGCTAGT 59.615 47.826 0.00 0.00 0.00 2.57
1235 8342 5.068723 CCCTATCCGTTTCTTCAGCTAGTAA 59.931 44.000 0.00 0.00 0.00 2.24
1236 8343 6.239345 CCCTATCCGTTTCTTCAGCTAGTAAT 60.239 42.308 0.00 0.00 0.00 1.89
1237 8344 7.210873 CCTATCCGTTTCTTCAGCTAGTAATT 58.789 38.462 0.00 0.00 0.00 1.40
1247 8373 7.307694 TCTTCAGCTAGTAATTCGTCGTTTTA 58.692 34.615 0.00 0.00 0.00 1.52
1248 8374 7.809331 TCTTCAGCTAGTAATTCGTCGTTTTAA 59.191 33.333 0.00 0.00 0.00 1.52
1276 8405 5.069251 TCTCTCCTCGTCTAATTTGAATCCC 59.931 44.000 0.00 0.00 0.00 3.85
1328 8460 1.568612 ATCAAACTGGTGAGCACGCG 61.569 55.000 3.53 3.53 0.00 6.01
1390 8522 1.227342 TTGCGCTTCTGAATGCACGA 61.227 50.000 9.73 2.22 37.01 4.35
1402 8534 0.389948 ATGCACGAGAGAACGGGTTC 60.390 55.000 3.37 3.37 39.03 3.62
1646 8926 6.142798 GCAGAGTAAATTTGTTCATGTGTGTG 59.857 38.462 0.00 0.00 0.00 3.82
1711 9113 8.910944 TGTGACAGGATTAAATACTAGTACTCC 58.089 37.037 4.31 6.91 0.00 3.85
1731 9133 5.126384 ACTCCATACAGAGCAAGTTCTACTC 59.874 44.000 0.00 0.00 37.39 2.59
1763 10618 4.852134 AATGCTGCACATGTTTCAGTTA 57.148 36.364 20.05 13.05 39.60 2.24
1806 10663 7.739498 AGATCACGTTTTTCTAAGCCTAAAA 57.261 32.000 0.00 0.00 0.00 1.52
1850 10707 2.417097 GCCCAAATATGGCGGCAC 59.583 61.111 16.34 0.00 46.09 5.01
1942 10799 4.593956 TGGCACCATATTGTACATTGTGA 58.406 39.130 14.00 0.00 0.00 3.58
1944 10801 5.067544 TGGCACCATATTGTACATTGTGATG 59.932 40.000 14.00 9.55 39.25 3.07
1956 10813 8.180317 TGTACATTGTGATGATAGTTGTAACG 57.820 34.615 0.00 0.00 36.73 3.18
2000 10857 7.473027 AAACTTGCACTGATTTTGATTCTTG 57.527 32.000 0.00 0.00 0.00 3.02
2234 11182 6.998074 ACTTGTTCAGTCATCTCATAAACCAA 59.002 34.615 0.00 0.00 0.00 3.67
2272 11221 5.569355 TCTCTGTCCAAATTTGCCTGAATA 58.431 37.500 12.92 3.99 0.00 1.75
2277 11226 6.825610 TGTCCAAATTTGCCTGAATAAAACT 58.174 32.000 12.92 0.00 0.00 2.66
2278 11227 7.278875 TGTCCAAATTTGCCTGAATAAAACTT 58.721 30.769 12.92 0.00 0.00 2.66
2291 11241 7.655732 CCTGAATAAAACTTTTTCATTTCCGGT 59.344 33.333 0.00 0.00 0.00 5.28
2304 11254 8.582657 TTTCATTTCCGGTTCTTCCATTTATA 57.417 30.769 0.00 0.00 35.57 0.98
2305 11255 8.760980 TTCATTTCCGGTTCTTCCATTTATAT 57.239 30.769 0.00 0.00 35.57 0.86
2377 11354 0.972134 TGACCAGAACAGGAGAGCTG 59.028 55.000 0.00 0.00 0.00 4.24
2503 11480 6.515531 GCTTCATGTTCTCAACTTCATGGAAA 60.516 38.462 0.00 0.00 38.39 3.13
2536 11513 3.583086 AGTACCAGCTACATGTTCTTGGT 59.417 43.478 23.01 23.01 0.00 3.67
2582 11822 6.169094 AGCATATCTCATTTACCATTCCTCG 58.831 40.000 0.00 0.00 0.00 4.63
2612 11852 2.550606 GTCACTTGCAATTGTTCCGGTA 59.449 45.455 15.50 0.00 0.00 4.02
2719 11959 5.047306 CCATAGCCGAGGTTTGTATATCTGA 60.047 44.000 0.00 0.00 0.00 3.27
2724 11964 6.483640 AGCCGAGGTTTGTATATCTGATTTTC 59.516 38.462 0.00 0.00 0.00 2.29
2725 11965 6.293462 GCCGAGGTTTGTATATCTGATTTTCC 60.293 42.308 0.00 0.00 0.00 3.13
2747 11987 6.353323 TCCGATTTGTTAATGAGCATAGGAA 58.647 36.000 0.00 0.00 0.00 3.36
2748 11988 6.483307 TCCGATTTGTTAATGAGCATAGGAAG 59.517 38.462 0.00 0.00 0.00 3.46
3023 12265 5.049405 GCAAGCTGTGAGTACTGTAATGTTT 60.049 40.000 0.00 0.00 0.00 2.83
3135 12378 1.404391 CTCAATGCTGCATCAACCCTC 59.596 52.381 16.55 0.00 0.00 4.30
3231 12474 6.088217 CGTCATTCATCTTATACAGCCTTACG 59.912 42.308 0.00 0.00 0.00 3.18
3248 12491 4.645588 CCTTACGGGTAAGATTCAGAGACT 59.354 45.833 17.82 0.00 43.90 3.24
3278 12530 9.862585 AAAATTCAGCGTTATCAATTTTGTTTC 57.137 25.926 7.32 0.00 37.16 2.78
3279 12531 6.667981 TTCAGCGTTATCAATTTTGTTTCG 57.332 33.333 0.00 0.00 0.00 3.46
3295 12548 2.396590 TTCGCTGAACCCAGTATTCC 57.603 50.000 0.00 0.00 42.35 3.01
3296 12549 1.568504 TCGCTGAACCCAGTATTCCT 58.431 50.000 0.00 0.00 42.35 3.36
3297 12550 1.480954 TCGCTGAACCCAGTATTCCTC 59.519 52.381 0.00 0.00 42.35 3.71
3298 12551 1.482593 CGCTGAACCCAGTATTCCTCT 59.517 52.381 0.00 0.00 42.35 3.69
3299 12552 2.093447 CGCTGAACCCAGTATTCCTCTT 60.093 50.000 0.00 0.00 42.35 2.85
3306 12564 7.792032 TGAACCCAGTATTCCTCTTATACAAG 58.208 38.462 0.00 0.00 32.18 3.16
3340 12601 6.664515 ACAAGTCGGTTATAACAATGTTGTG 58.335 36.000 17.16 8.23 41.31 3.33
3341 12602 5.291293 AGTCGGTTATAACAATGTTGTGC 57.709 39.130 17.16 0.29 41.31 4.57
3414 12675 5.350504 TCTGAACAATTCATCCCTCTCTC 57.649 43.478 0.00 0.00 39.30 3.20
3418 12679 2.102252 ACAATTCATCCCTCTCTCGAGC 59.898 50.000 7.81 0.00 35.90 5.03
3441 12702 0.803768 CAGTTGGCTCATCGGTCTCG 60.804 60.000 0.00 0.00 37.82 4.04
3498 12759 1.272490 TCAGGTTCAAGCCGTAGAGTG 59.728 52.381 0.00 0.00 0.00 3.51
3533 12794 4.628333 TGACCGTATTTCCTCGATGAAAAC 59.372 41.667 17.91 15.15 37.74 2.43
3579 12840 4.330250 AGTGAGTTTCATTGTCCATCAGG 58.670 43.478 0.00 0.00 0.00 3.86
3588 12849 1.909700 TGTCCATCAGGTTTCTTGGC 58.090 50.000 0.00 0.00 35.89 4.52
3590 12851 2.158475 TGTCCATCAGGTTTCTTGGCTT 60.158 45.455 0.00 0.00 35.89 4.35
3655 12916 2.818130 TTCCTTCCATTTTGCTGTGC 57.182 45.000 0.00 0.00 0.00 4.57
3686 12950 7.435068 TTGTCTATTAGCTTTCTTGGTTGAC 57.565 36.000 0.00 0.00 0.00 3.18
3692 12956 4.009370 AGCTTTCTTGGTTGACTCTACC 57.991 45.455 2.90 2.90 36.17 3.18
3697 12961 6.681729 TTTCTTGGTTGACTCTACCTATGT 57.318 37.500 10.53 0.00 36.60 2.29
3705 12969 6.372185 GTTGACTCTACCTATGTAGTATGCG 58.628 44.000 5.26 0.00 44.08 4.73
3706 12970 5.001874 TGACTCTACCTATGTAGTATGCGG 58.998 45.833 5.26 0.00 44.08 5.69
3714 12978 5.474876 ACCTATGTAGTATGCGGTACCTTAC 59.525 44.000 10.90 9.08 33.58 2.34
3857 13248 8.708378 TCTCTCATGCTCTTTCCTATGAATTTA 58.292 33.333 0.00 0.00 0.00 1.40
3881 13272 0.963355 GCGTTTGGGATAACTGGGCA 60.963 55.000 0.00 0.00 0.00 5.36
3935 13806 2.420642 TGCTGCATCTCAGTTCAGTTC 58.579 47.619 0.00 0.00 44.66 3.01
3940 13811 5.050227 GCTGCATCTCAGTTCAGTTCATATC 60.050 44.000 0.00 0.00 44.66 1.63
4036 13907 2.160205 GTGGTGGAAAAGTAAGCTCCC 58.840 52.381 0.00 0.00 0.00 4.30
4096 13996 3.182967 GCGACTCTCAGTCATAACCTTG 58.817 50.000 4.60 0.00 45.30 3.61
4113 14013 4.407365 ACCTTGGGGTTTCTTACATTCTG 58.593 43.478 0.00 0.00 44.73 3.02
4341 14710 3.051081 ACACTCTTCAACTGCTCCATC 57.949 47.619 0.00 0.00 0.00 3.51
4368 14737 6.189859 AGAGAACATTGCTTATGGATTGGAA 58.810 36.000 4.75 0.00 38.64 3.53
4385 14754 3.240134 AAGGCAAAGCGAGCTCCGA 62.240 57.895 8.47 0.00 41.76 4.55
4479 14854 2.300152 CTGCAGGACCTGACTAACTTGA 59.700 50.000 26.25 0.00 32.44 3.02
4724 15101 2.664402 ATTGCCAACTCCTGAACTGT 57.336 45.000 0.00 0.00 0.00 3.55
4754 15131 8.965986 AATTTTCAGCCGTTTATTTACTTCTC 57.034 30.769 0.00 0.00 0.00 2.87
4755 15132 5.773239 TTCAGCCGTTTATTTACTTCTCG 57.227 39.130 0.00 0.00 0.00 4.04
4756 15133 4.178540 TCAGCCGTTTATTTACTTCTCGG 58.821 43.478 0.00 0.00 39.52 4.63
4759 15136 4.081807 AGCCGTTTATTTACTTCTCGGTCT 60.082 41.667 0.00 0.00 38.89 3.85
4761 15138 5.445540 GCCGTTTATTTACTTCTCGGTCTTG 60.446 44.000 0.00 0.00 38.89 3.02
4762 15139 5.636543 CCGTTTATTTACTTCTCGGTCTTGT 59.363 40.000 0.00 0.00 33.20 3.16
4873 15264 2.833582 GCCGTCATCTCCGAGGGA 60.834 66.667 3.94 0.00 42.40 4.20
4931 15322 2.101575 GCGACGGCATCTACACGA 59.898 61.111 0.00 0.00 39.62 4.35
4941 15332 1.135139 CATCTACACGACCCTGGTGAG 59.865 57.143 0.00 0.00 38.73 3.51
4972 15363 0.472471 AGTTGCCCAAGTTCGAAGGA 59.528 50.000 0.00 0.00 0.00 3.36
4993 15384 4.431131 ACCAATGGGGCAGCCGAG 62.431 66.667 5.00 0.00 42.05 4.63
5026 15432 0.669077 ACGGCCACTAGTGATCGATC 59.331 55.000 30.24 18.72 32.98 3.69
5030 15436 2.064762 GCCACTAGTGATCGATCATGC 58.935 52.381 29.53 18.19 39.30 4.06
5033 15439 3.005155 CCACTAGTGATCGATCATGCTCA 59.995 47.826 29.53 12.81 39.30 4.26
5037 15443 2.957680 AGTGATCGATCATGCTCACTCT 59.042 45.455 29.53 16.63 43.60 3.24
5047 15453 2.948720 GCTCACTCTTCCCCGCAGT 61.949 63.158 0.00 0.00 0.00 4.40
5056 15462 0.887387 TTCCCCGCAGTTAAGCACAC 60.887 55.000 0.00 0.00 0.00 3.82
5066 15472 0.109964 TTAAGCACACGCCATTTCGC 60.110 50.000 0.00 0.00 39.83 4.70
5142 15548 5.778241 TCTCTCCTACACATTTGGTTCACTA 59.222 40.000 0.00 0.00 0.00 2.74
5145 15551 5.547465 TCCTACACATTTGGTTCACTAGTG 58.453 41.667 17.17 17.17 0.00 2.74
5146 15552 5.305902 TCCTACACATTTGGTTCACTAGTGA 59.694 40.000 21.74 21.74 37.91 3.41
5147 15553 6.013725 TCCTACACATTTGGTTCACTAGTGAT 60.014 38.462 25.68 7.49 39.64 3.06
5148 15554 6.313905 CCTACACATTTGGTTCACTAGTGATC 59.686 42.308 25.68 23.10 39.64 2.92
5149 15555 4.690748 ACACATTTGGTTCACTAGTGATCG 59.309 41.667 25.68 13.61 39.64 3.69
5150 15556 4.929211 CACATTTGGTTCACTAGTGATCGA 59.071 41.667 25.68 18.70 39.64 3.59
5151 15557 5.582269 CACATTTGGTTCACTAGTGATCGAT 59.418 40.000 25.68 15.45 39.64 3.59
5152 15558 5.582269 ACATTTGGTTCACTAGTGATCGATG 59.418 40.000 25.68 24.70 39.64 3.84
5157 15563 4.500545 GGTTCACTAGTGATCGATGATGCT 60.501 45.833 25.68 0.00 39.64 3.79
5158 15564 4.234530 TCACTAGTGATCGATGATGCTG 57.765 45.455 21.74 0.00 34.14 4.41
5161 15567 2.235845 AGTGATCGATGATGCTGGTG 57.764 50.000 0.54 0.00 0.00 4.17
5168 15575 1.539065 CGATGATGCTGGTGTAGGACC 60.539 57.143 0.00 0.00 46.37 4.46
5183 15597 0.246635 GGACCGTGAGTGCACTGTAT 59.753 55.000 27.27 4.61 41.64 2.29
5196 15610 2.480419 GCACTGTATAGCTAATTGCCCG 59.520 50.000 0.00 0.00 44.23 6.13
5202 15616 0.391927 TAGCTAATTGCCCGTGCGTT 60.392 50.000 0.00 0.00 44.23 4.84
5204 15618 0.247934 GCTAATTGCCCGTGCGTTAC 60.248 55.000 0.00 0.00 41.78 2.50
5205 15619 1.080298 CTAATTGCCCGTGCGTTACA 58.920 50.000 0.00 0.00 41.78 2.41
5206 15620 1.465387 CTAATTGCCCGTGCGTTACAA 59.535 47.619 0.00 0.00 41.78 2.41
5215 15629 2.066262 CGTGCGTTACAAGGAGTGAAT 58.934 47.619 0.00 0.00 0.00 2.57
5216 15630 3.247442 CGTGCGTTACAAGGAGTGAATA 58.753 45.455 0.00 0.00 0.00 1.75
5220 15634 6.608610 GTGCGTTACAAGGAGTGAATAATTT 58.391 36.000 0.00 0.00 0.00 1.82
5221 15635 7.081976 GTGCGTTACAAGGAGTGAATAATTTT 58.918 34.615 0.00 0.00 0.00 1.82
5222 15636 7.270579 GTGCGTTACAAGGAGTGAATAATTTTC 59.729 37.037 0.00 0.00 0.00 2.29
5320 15736 9.821662 ATTTAATTGAAGTGTACGTAAAGAAGC 57.178 29.630 0.00 0.00 0.00 3.86
5327 15743 2.095059 TGTACGTAAAGAAGCCGAGACC 60.095 50.000 0.00 0.00 0.00 3.85
5332 15748 3.002656 CGTAAAGAAGCCGAGACCGTATA 59.997 47.826 0.00 0.00 0.00 1.47
5339 16283 5.243283 AGAAGCCGAGACCGTATAACATATT 59.757 40.000 0.00 0.00 0.00 1.28
5374 16319 9.628500 TCACTCTACTATTTAGCTTGAGATGTA 57.372 33.333 0.00 0.00 0.00 2.29
5402 16347 9.959721 ATCACATGGTTACTTTATCAACTAACT 57.040 29.630 0.00 0.00 0.00 2.24
5543 16491 7.770897 ACCCTCAAGACAGACATTGTATTTATC 59.229 37.037 0.00 0.00 39.11 1.75
5544 16492 7.989741 CCCTCAAGACAGACATTGTATTTATCT 59.010 37.037 0.00 0.00 39.11 1.98
5598 16546 2.120909 CGAAAGCCGGCCATCCAAT 61.121 57.895 26.15 0.00 33.91 3.16
5607 16555 0.259938 GGCCATCCAATCTTGTCCCT 59.740 55.000 0.00 0.00 0.00 4.20
5613 16561 5.833131 GCCATCCAATCTTGTCCCTTAAATA 59.167 40.000 0.00 0.00 0.00 1.40
5627 16575 7.336931 TGTCCCTTAAATATTTGTCTCTGCTTC 59.663 37.037 11.05 0.00 0.00 3.86
5630 16578 8.401709 CCCTTAAATATTTGTCTCTGCTTCTTC 58.598 37.037 11.05 0.00 0.00 2.87
5667 16623 9.638300 CACTTAATAGCATATCAAAACTTCGAC 57.362 33.333 0.00 0.00 0.00 4.20
5779 16735 6.788243 TCAGCTTGCATATATGTTTCAGTTG 58.212 36.000 14.14 11.86 0.00 3.16
5801 16758 8.499406 AGTTGTCCCTTTAATTGCCTACATATA 58.501 33.333 0.00 0.00 0.00 0.86
5824 16781 6.749923 ACTCAATCAATCTTTACCTTGAGC 57.250 37.500 9.37 0.00 41.94 4.26
5846 16803 2.274437 GCTCATGAGTTGCTCGATGAA 58.726 47.619 23.38 0.00 32.35 2.57
5943 16900 4.829064 TGTTCTCAAAATCCAAACCTCG 57.171 40.909 0.00 0.00 0.00 4.63
5969 16927 2.978278 GGATCTTCACCTCATCCTCCAT 59.022 50.000 0.00 0.00 34.31 3.41
5985 16943 4.823442 TCCTCCATGATTATGTTGTGCATC 59.177 41.667 0.00 0.00 38.94 3.91
6015 16973 8.267183 ACACAACATGTCATCATCTCCTATAAA 58.733 33.333 0.00 0.00 36.54 1.40
6016 16974 9.112725 CACAACATGTCATCATCTCCTATAAAA 57.887 33.333 0.00 0.00 31.15 1.52
6017 16975 9.334947 ACAACATGTCATCATCTCCTATAAAAG 57.665 33.333 0.00 0.00 31.15 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.191995 CGTTTCTGCTTGTTTCCTTTTATTATT 57.808 29.630 0.00 0.00 0.00 1.40
12 13 8.573035 TCGTTTCTGCTTGTTTCCTTTTATTAT 58.427 29.630 0.00 0.00 0.00 1.28
14 15 6.801575 TCGTTTCTGCTTGTTTCCTTTTATT 58.198 32.000 0.00 0.00 0.00 1.40
15 16 6.385649 TCGTTTCTGCTTGTTTCCTTTTAT 57.614 33.333 0.00 0.00 0.00 1.40
16 17 5.821516 TCGTTTCTGCTTGTTTCCTTTTA 57.178 34.783 0.00 0.00 0.00 1.52
17 18 4.712122 TCGTTTCTGCTTGTTTCCTTTT 57.288 36.364 0.00 0.00 0.00 2.27
18 19 4.082463 TGTTCGTTTCTGCTTGTTTCCTTT 60.082 37.500 0.00 0.00 0.00 3.11
20 21 3.013921 TGTTCGTTTCTGCTTGTTTCCT 58.986 40.909 0.00 0.00 0.00 3.36
21 22 3.414549 TGTTCGTTTCTGCTTGTTTCC 57.585 42.857 0.00 0.00 0.00 3.13
22 23 5.755330 TTTTGTTCGTTTCTGCTTGTTTC 57.245 34.783 0.00 0.00 0.00 2.78
44 45 6.938030 TGTACGATTTTCCCATGTCTAGTTTT 59.062 34.615 0.00 0.00 0.00 2.43
45 46 6.469410 TGTACGATTTTCCCATGTCTAGTTT 58.531 36.000 0.00 0.00 0.00 2.66
49 50 6.592607 GTCTTTGTACGATTTTCCCATGTCTA 59.407 38.462 0.00 0.00 0.00 2.59
50 51 5.411669 GTCTTTGTACGATTTTCCCATGTCT 59.588 40.000 0.00 0.00 0.00 3.41
51 52 5.391629 GGTCTTTGTACGATTTTCCCATGTC 60.392 44.000 0.00 0.00 0.00 3.06
52 53 4.457949 GGTCTTTGTACGATTTTCCCATGT 59.542 41.667 0.00 0.00 0.00 3.21
53 54 4.700213 AGGTCTTTGTACGATTTTCCCATG 59.300 41.667 0.00 0.00 0.00 3.66
54 55 4.918588 AGGTCTTTGTACGATTTTCCCAT 58.081 39.130 0.00 0.00 0.00 4.00
55 56 4.360951 AGGTCTTTGTACGATTTTCCCA 57.639 40.909 0.00 0.00 0.00 4.37
56 57 5.163923 CGTTAGGTCTTTGTACGATTTTCCC 60.164 44.000 0.00 0.00 34.36 3.97
57 58 5.163923 CCGTTAGGTCTTTGTACGATTTTCC 60.164 44.000 0.00 0.00 34.36 3.13
58 59 5.850931 CCGTTAGGTCTTTGTACGATTTTC 58.149 41.667 0.00 0.00 34.36 2.29
59 60 5.851047 CCGTTAGGTCTTTGTACGATTTT 57.149 39.130 0.00 0.00 34.36 1.82
75 76 1.202382 GCACCACTAGCCTACCGTTAG 60.202 57.143 0.00 0.00 0.00 2.34
76 77 0.819582 GCACCACTAGCCTACCGTTA 59.180 55.000 0.00 0.00 0.00 3.18
77 78 1.595357 GCACCACTAGCCTACCGTT 59.405 57.895 0.00 0.00 0.00 4.44
78 79 2.707849 CGCACCACTAGCCTACCGT 61.708 63.158 0.00 0.00 0.00 4.83
79 80 2.104331 CGCACCACTAGCCTACCG 59.896 66.667 0.00 0.00 0.00 4.02
80 81 2.202892 GCGCACCACTAGCCTACC 60.203 66.667 0.30 0.00 0.00 3.18
81 82 0.806492 GAAGCGCACCACTAGCCTAC 60.806 60.000 11.47 0.00 0.00 3.18
82 83 1.254975 TGAAGCGCACCACTAGCCTA 61.255 55.000 11.47 0.00 0.00 3.93
83 84 2.111999 TTGAAGCGCACCACTAGCCT 62.112 55.000 11.47 0.00 0.00 4.58
84 85 1.639298 CTTGAAGCGCACCACTAGCC 61.639 60.000 11.47 0.00 0.00 3.93
85 86 0.670546 TCTTGAAGCGCACCACTAGC 60.671 55.000 11.47 0.00 0.00 3.42
86 87 1.728971 CTTCTTGAAGCGCACCACTAG 59.271 52.381 11.47 2.28 0.00 2.57
87 88 1.343142 TCTTCTTGAAGCGCACCACTA 59.657 47.619 11.47 0.00 0.00 2.74
88 89 0.106708 TCTTCTTGAAGCGCACCACT 59.893 50.000 11.47 0.00 0.00 4.00
89 90 0.944386 TTCTTCTTGAAGCGCACCAC 59.056 50.000 11.47 0.00 0.00 4.16
90 91 1.896220 ATTCTTCTTGAAGCGCACCA 58.104 45.000 11.47 3.42 38.18 4.17
91 92 2.997485 AATTCTTCTTGAAGCGCACC 57.003 45.000 11.47 0.05 38.18 5.01
92 93 3.420828 GCTAATTCTTCTTGAAGCGCAC 58.579 45.455 11.47 3.52 38.18 5.34
93 94 2.094258 CGCTAATTCTTCTTGAAGCGCA 59.906 45.455 11.47 0.00 39.02 6.09
94 95 2.698472 CGCTAATTCTTCTTGAAGCGC 58.302 47.619 0.00 0.00 39.02 5.92
95 96 2.537730 GGCGCTAATTCTTCTTGAAGCG 60.538 50.000 7.64 9.93 44.38 4.68
96 97 2.223363 GGGCGCTAATTCTTCTTGAAGC 60.223 50.000 7.64 0.00 38.18 3.86
97 98 3.009723 TGGGCGCTAATTCTTCTTGAAG 58.990 45.455 7.64 4.13 38.18 3.02
98 99 3.009723 CTGGGCGCTAATTCTTCTTGAA 58.990 45.455 7.64 0.00 39.24 2.69
99 100 2.236146 TCTGGGCGCTAATTCTTCTTGA 59.764 45.455 7.64 0.00 0.00 3.02
101 102 3.350219 TTCTGGGCGCTAATTCTTCTT 57.650 42.857 7.64 0.00 0.00 2.52
102 103 3.350219 TTTCTGGGCGCTAATTCTTCT 57.650 42.857 7.64 0.00 0.00 2.85
104 105 4.462483 TGATTTTTCTGGGCGCTAATTCTT 59.538 37.500 7.64 0.00 0.00 2.52
105 106 4.016444 TGATTTTTCTGGGCGCTAATTCT 58.984 39.130 7.64 0.00 0.00 2.40
106 107 4.105486 GTGATTTTTCTGGGCGCTAATTC 58.895 43.478 7.64 0.00 0.00 2.17
107 108 3.427503 CGTGATTTTTCTGGGCGCTAATT 60.428 43.478 7.64 0.00 0.00 1.40
108 109 2.097466 CGTGATTTTTCTGGGCGCTAAT 59.903 45.455 7.64 0.00 0.00 1.73
109 110 1.466950 CGTGATTTTTCTGGGCGCTAA 59.533 47.619 7.64 0.00 0.00 3.09
111 112 0.605319 TCGTGATTTTTCTGGGCGCT 60.605 50.000 7.64 0.00 0.00 5.92
112 113 0.179189 CTCGTGATTTTTCTGGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
114 115 0.171231 GCCTCGTGATTTTTCTGGGC 59.829 55.000 0.00 0.00 0.00 5.36
117 118 4.797471 TCAATTGCCTCGTGATTTTTCTG 58.203 39.130 0.00 0.00 0.00 3.02
118 119 5.452078 TTCAATTGCCTCGTGATTTTTCT 57.548 34.783 0.00 0.00 0.00 2.52
120 121 6.930722 AGATTTTCAATTGCCTCGTGATTTTT 59.069 30.769 0.00 0.00 0.00 1.94
122 123 5.865552 CAGATTTTCAATTGCCTCGTGATTT 59.134 36.000 0.00 0.00 0.00 2.17
123 124 5.404946 CAGATTTTCAATTGCCTCGTGATT 58.595 37.500 0.00 0.00 0.00 2.57
125 126 3.366273 GCAGATTTTCAATTGCCTCGTGA 60.366 43.478 0.00 0.00 0.00 4.35
126 127 2.919229 GCAGATTTTCAATTGCCTCGTG 59.081 45.455 0.00 0.00 0.00 4.35
127 128 2.557924 TGCAGATTTTCAATTGCCTCGT 59.442 40.909 0.00 0.00 35.75 4.18
129 130 3.916761 TGTGCAGATTTTCAATTGCCTC 58.083 40.909 0.00 0.00 35.75 4.70
130 131 4.546829 ATGTGCAGATTTTCAATTGCCT 57.453 36.364 0.00 0.00 35.75 4.75
131 132 5.616488 AAATGTGCAGATTTTCAATTGCC 57.384 34.783 15.59 0.00 35.75 4.52
132 133 6.913673 ACAAAAATGTGCAGATTTTCAATTGC 59.086 30.769 28.50 0.00 35.01 3.56
133 134 8.339714 AGACAAAAATGTGCAGATTTTCAATTG 58.660 29.630 28.50 24.36 35.01 2.32
134 135 8.441312 AGACAAAAATGTGCAGATTTTCAATT 57.559 26.923 28.50 14.55 35.01 2.32
135 136 7.929785 AGAGACAAAAATGTGCAGATTTTCAAT 59.070 29.630 28.50 18.97 35.01 2.57
136 137 7.267128 AGAGACAAAAATGTGCAGATTTTCAA 58.733 30.769 28.50 0.00 35.01 2.69
137 138 6.808829 AGAGACAAAAATGTGCAGATTTTCA 58.191 32.000 28.50 4.98 35.01 2.69
138 139 8.976986 ATAGAGACAAAAATGTGCAGATTTTC 57.023 30.769 28.50 19.12 35.01 2.29
139 140 8.579006 TGATAGAGACAAAAATGTGCAGATTTT 58.421 29.630 24.47 24.47 37.16 1.82
140 141 8.025445 GTGATAGAGACAAAAATGTGCAGATTT 58.975 33.333 15.59 15.59 0.00 2.17
141 142 7.533426 GTGATAGAGACAAAAATGTGCAGATT 58.467 34.615 2.67 2.67 0.00 2.40
144 145 5.319139 CGTGATAGAGACAAAAATGTGCAG 58.681 41.667 0.00 0.00 0.00 4.41
145 146 4.154015 CCGTGATAGAGACAAAAATGTGCA 59.846 41.667 0.00 0.00 0.00 4.57
146 147 4.437390 CCCGTGATAGAGACAAAAATGTGC 60.437 45.833 0.00 0.00 0.00 4.57
147 148 4.437390 GCCCGTGATAGAGACAAAAATGTG 60.437 45.833 0.00 0.00 0.00 3.21
150 151 4.222124 AGCCCGTGATAGAGACAAAAAT 57.778 40.909 0.00 0.00 0.00 1.82
151 152 3.695830 AGCCCGTGATAGAGACAAAAA 57.304 42.857 0.00 0.00 0.00 1.94
152 153 3.244422 ACAAGCCCGTGATAGAGACAAAA 60.244 43.478 0.00 0.00 0.00 2.44
155 156 1.557099 ACAAGCCCGTGATAGAGACA 58.443 50.000 0.00 0.00 0.00 3.41
179 180 5.128499 ACACATGGAAGGATGTTGAACAAAA 59.872 36.000 0.62 0.00 34.18 2.44
180 181 4.648762 ACACATGGAAGGATGTTGAACAAA 59.351 37.500 0.62 0.00 34.18 2.83
182 183 3.569277 CACACATGGAAGGATGTTGAACA 59.431 43.478 0.00 0.00 34.18 3.18
184 185 3.569277 CACACACATGGAAGGATGTTGAA 59.431 43.478 0.00 0.00 34.18 2.69
185 186 3.148412 CACACACATGGAAGGATGTTGA 58.852 45.455 0.00 0.00 34.18 3.18
186 187 2.886523 ACACACACATGGAAGGATGTTG 59.113 45.455 0.00 0.00 34.18 3.33
187 188 3.228188 ACACACACATGGAAGGATGTT 57.772 42.857 0.00 0.00 34.18 2.71
188 189 2.957402 ACACACACATGGAAGGATGT 57.043 45.000 0.00 0.00 37.01 3.06
190 191 6.945435 TGTTTTATACACACACATGGAAGGAT 59.055 34.615 0.00 0.00 0.00 3.24
191 192 6.299922 TGTTTTATACACACACATGGAAGGA 58.700 36.000 0.00 0.00 0.00 3.36
192 193 6.567687 TGTTTTATACACACACATGGAAGG 57.432 37.500 0.00 0.00 0.00 3.46
210 211 8.616942 CGGGAAATTTCCTTGTTAATTTGTTTT 58.383 29.630 31.23 0.00 46.72 2.43
211 212 7.227711 CCGGGAAATTTCCTTGTTAATTTGTTT 59.772 33.333 31.23 0.00 46.72 2.83
212 213 6.708502 CCGGGAAATTTCCTTGTTAATTTGTT 59.291 34.615 31.23 0.00 46.72 2.83
213 214 6.183361 ACCGGGAAATTTCCTTGTTAATTTGT 60.183 34.615 31.23 15.04 46.72 2.83
214 215 6.227522 ACCGGGAAATTTCCTTGTTAATTTG 58.772 36.000 31.23 14.53 46.72 2.32
215 216 6.428083 ACCGGGAAATTTCCTTGTTAATTT 57.572 33.333 31.23 7.86 46.72 1.82
216 217 5.046878 GGACCGGGAAATTTCCTTGTTAATT 60.047 40.000 31.23 11.38 46.72 1.40
217 218 4.464951 GGACCGGGAAATTTCCTTGTTAAT 59.535 41.667 31.23 13.71 46.72 1.40
218 219 3.827876 GGACCGGGAAATTTCCTTGTTAA 59.172 43.478 31.23 0.00 46.72 2.01
219 220 3.181431 TGGACCGGGAAATTTCCTTGTTA 60.181 43.478 31.23 19.07 46.72 2.41
220 221 2.244695 GGACCGGGAAATTTCCTTGTT 58.755 47.619 31.23 16.32 46.72 2.83
221 222 1.146152 TGGACCGGGAAATTTCCTTGT 59.854 47.619 31.23 26.96 46.72 3.16
224 225 2.687003 TTTGGACCGGGAAATTTCCT 57.313 45.000 31.23 16.00 46.72 3.36
225 226 5.172934 GTTTATTTGGACCGGGAAATTTCC 58.827 41.667 26.41 26.41 46.82 3.13
226 227 5.785243 TGTTTATTTGGACCGGGAAATTTC 58.215 37.500 6.32 9.83 0.00 2.17
228 229 5.810080 TTGTTTATTTGGACCGGGAAATT 57.190 34.783 6.32 0.00 0.00 1.82
229 230 5.810080 TTTGTTTATTTGGACCGGGAAAT 57.190 34.783 6.32 9.84 0.00 2.17
231 232 5.105064 TGTTTTTGTTTATTTGGACCGGGAA 60.105 36.000 6.32 0.00 0.00 3.97
232 233 4.404715 TGTTTTTGTTTATTTGGACCGGGA 59.595 37.500 6.32 0.00 0.00 5.14
233 234 4.694339 TGTTTTTGTTTATTTGGACCGGG 58.306 39.130 6.32 0.00 0.00 5.73
234 235 6.092259 TGTTTGTTTTTGTTTATTTGGACCGG 59.908 34.615 0.00 0.00 0.00 5.28
235 236 7.061752 TGTTTGTTTTTGTTTATTTGGACCG 57.938 32.000 0.00 0.00 0.00 4.79
237 238 9.665264 TGTTTGTTTGTTTTTGTTTATTTGGAC 57.335 25.926 0.00 0.00 0.00 4.02
245 246 9.191995 TGTTTGTTTGTTTGTTTGTTTTTGTTT 57.808 22.222 0.00 0.00 0.00 2.83
247 248 8.742554 TTGTTTGTTTGTTTGTTTGTTTTTGT 57.257 23.077 0.00 0.00 0.00 2.83
248 249 9.667500 CTTTGTTTGTTTGTTTGTTTGTTTTTG 57.332 25.926 0.00 0.00 0.00 2.44
249 250 8.864024 CCTTTGTTTGTTTGTTTGTTTGTTTTT 58.136 25.926 0.00 0.00 0.00 1.94
250 251 7.489435 CCCTTTGTTTGTTTGTTTGTTTGTTTT 59.511 29.630 0.00 0.00 0.00 2.43
252 253 6.318900 TCCCTTTGTTTGTTTGTTTGTTTGTT 59.681 30.769 0.00 0.00 0.00 2.83
255 256 6.318900 TGTTCCCTTTGTTTGTTTGTTTGTTT 59.681 30.769 0.00 0.00 0.00 2.83
257 258 5.368989 TGTTCCCTTTGTTTGTTTGTTTGT 58.631 33.333 0.00 0.00 0.00 2.83
258 259 5.931441 TGTTCCCTTTGTTTGTTTGTTTG 57.069 34.783 0.00 0.00 0.00 2.93
259 260 5.471797 CCTTGTTCCCTTTGTTTGTTTGTTT 59.528 36.000 0.00 0.00 0.00 2.83
260 261 5.000591 CCTTGTTCCCTTTGTTTGTTTGTT 58.999 37.500 0.00 0.00 0.00 2.83
261 262 4.284746 TCCTTGTTCCCTTTGTTTGTTTGT 59.715 37.500 0.00 0.00 0.00 2.83
262 263 4.826556 TCCTTGTTCCCTTTGTTTGTTTG 58.173 39.130 0.00 0.00 0.00 2.93
264 265 5.487433 CTTTCCTTGTTCCCTTTGTTTGTT 58.513 37.500 0.00 0.00 0.00 2.83
267 268 3.118408 GGCTTTCCTTGTTCCCTTTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
268 269 2.434336 GGCTTTCCTTGTTCCCTTTGTT 59.566 45.455 0.00 0.00 0.00 2.83
269 270 2.039418 GGCTTTCCTTGTTCCCTTTGT 58.961 47.619 0.00 0.00 0.00 2.83
270 271 1.344438 GGGCTTTCCTTGTTCCCTTTG 59.656 52.381 0.00 0.00 34.19 2.77
275 276 1.408969 TTGTGGGCTTTCCTTGTTCC 58.591 50.000 0.00 0.00 36.20 3.62
276 277 3.653344 GATTTGTGGGCTTTCCTTGTTC 58.347 45.455 0.00 0.00 36.20 3.18
277 278 2.035832 CGATTTGTGGGCTTTCCTTGTT 59.964 45.455 0.00 0.00 36.20 2.83
278 279 1.613437 CGATTTGTGGGCTTTCCTTGT 59.387 47.619 0.00 0.00 36.20 3.16
279 280 1.067635 CCGATTTGTGGGCTTTCCTTG 60.068 52.381 0.00 0.00 36.20 3.61
280 281 1.256812 CCGATTTGTGGGCTTTCCTT 58.743 50.000 0.00 0.00 36.20 3.36
281 282 0.611896 CCCGATTTGTGGGCTTTCCT 60.612 55.000 0.00 0.00 40.47 3.36
289 290 1.942657 CTGTATCAGCCCGATTTGTGG 59.057 52.381 0.00 0.00 35.39 4.17
303 304 0.104855 TGCGTCTGATGGGCTGTATC 59.895 55.000 0.00 0.00 0.00 2.24
305 306 0.108186 CTTGCGTCTGATGGGCTGTA 60.108 55.000 0.00 0.00 0.00 2.74
306 307 1.376424 CTTGCGTCTGATGGGCTGT 60.376 57.895 0.00 0.00 0.00 4.40
307 308 1.364626 GACTTGCGTCTGATGGGCTG 61.365 60.000 0.00 0.00 37.19 4.85
308 309 1.078848 GACTTGCGTCTGATGGGCT 60.079 57.895 0.00 0.00 37.19 5.19
310 311 1.081892 CTTGACTTGCGTCTGATGGG 58.918 55.000 0.00 0.00 40.86 4.00
311 312 2.084610 TCTTGACTTGCGTCTGATGG 57.915 50.000 0.00 0.00 40.86 3.51
312 313 4.400845 CATTTCTTGACTTGCGTCTGATG 58.599 43.478 0.00 0.00 40.86 3.07
315 316 2.095567 CCCATTTCTTGACTTGCGTCTG 60.096 50.000 0.00 0.00 40.86 3.51
316 317 2.154462 CCCATTTCTTGACTTGCGTCT 58.846 47.619 0.00 0.00 40.86 4.18
317 318 1.401539 GCCCATTTCTTGACTTGCGTC 60.402 52.381 0.00 0.00 40.64 5.19
318 319 0.598065 GCCCATTTCTTGACTTGCGT 59.402 50.000 0.00 0.00 0.00 5.24
319 320 0.109132 GGCCCATTTCTTGACTTGCG 60.109 55.000 0.00 0.00 0.00 4.85
323 324 4.870021 AGATTAGGCCCATTTCTTGACT 57.130 40.909 0.00 0.00 0.00 3.41
325 326 5.975988 AGTAGATTAGGCCCATTTCTTGA 57.024 39.130 0.00 0.00 0.00 3.02
326 327 7.229506 CCTAAAGTAGATTAGGCCCATTTCTTG 59.770 40.741 0.00 0.00 43.95 3.02
338 339 7.858382 CGACTGATGTCACCTAAAGTAGATTAG 59.142 40.741 0.00 0.00 43.06 1.73
339 340 7.555195 TCGACTGATGTCACCTAAAGTAGATTA 59.445 37.037 0.00 0.00 43.06 1.75
340 341 6.377429 TCGACTGATGTCACCTAAAGTAGATT 59.623 38.462 0.00 0.00 43.06 2.40
341 342 5.886474 TCGACTGATGTCACCTAAAGTAGAT 59.114 40.000 0.00 0.00 43.06 1.98
342 343 5.123502 GTCGACTGATGTCACCTAAAGTAGA 59.876 44.000 8.70 0.00 43.06 2.59
343 344 5.124138 AGTCGACTGATGTCACCTAAAGTAG 59.876 44.000 19.30 0.00 43.06 2.57
344 345 5.008331 AGTCGACTGATGTCACCTAAAGTA 58.992 41.667 19.30 0.00 43.06 2.24
345 346 3.827302 AGTCGACTGATGTCACCTAAAGT 59.173 43.478 19.30 0.00 43.06 2.66
346 347 4.169508 CAGTCGACTGATGTCACCTAAAG 58.830 47.826 36.73 7.53 46.59 1.85
347 348 4.174411 CAGTCGACTGATGTCACCTAAA 57.826 45.455 36.73 0.00 46.59 1.85
348 349 3.850122 CAGTCGACTGATGTCACCTAA 57.150 47.619 36.73 0.00 46.59 2.69
361 362 2.674357 GTCTGTCTAGGTCTCAGTCGAC 59.326 54.545 7.70 7.70 0.00 4.20
362 363 2.354906 GGTCTGTCTAGGTCTCAGTCGA 60.355 54.545 0.00 0.00 0.00 4.20
363 364 2.011222 GGTCTGTCTAGGTCTCAGTCG 58.989 57.143 0.00 0.00 0.00 4.18
364 365 2.371306 GGGTCTGTCTAGGTCTCAGTC 58.629 57.143 0.00 0.00 0.00 3.51
365 366 1.340211 CGGGTCTGTCTAGGTCTCAGT 60.340 57.143 0.00 0.00 0.00 3.41
369 370 0.033011 ATGCGGGTCTGTCTAGGTCT 60.033 55.000 0.00 0.00 0.00 3.85
370 371 1.688772 TATGCGGGTCTGTCTAGGTC 58.311 55.000 0.00 0.00 0.00 3.85
371 372 2.154567 TTATGCGGGTCTGTCTAGGT 57.845 50.000 0.00 0.00 0.00 3.08
372 373 3.753294 ATTTATGCGGGTCTGTCTAGG 57.247 47.619 0.00 0.00 0.00 3.02
373 374 8.827177 TTATTTATTTATGCGGGTCTGTCTAG 57.173 34.615 0.00 0.00 0.00 2.43
374 375 9.787435 ATTTATTTATTTATGCGGGTCTGTCTA 57.213 29.630 0.00 0.00 0.00 2.59
375 376 8.691661 ATTTATTTATTTATGCGGGTCTGTCT 57.308 30.769 0.00 0.00 0.00 3.41
429 7414 5.607939 TTATCCGCCAGTAATCAGAGAAA 57.392 39.130 0.00 0.00 0.00 2.52
435 7420 6.429692 CCATGTTAATTATCCGCCAGTAATCA 59.570 38.462 0.00 0.00 0.00 2.57
446 7431 6.570378 CGCCTTCCATTCCATGTTAATTATCC 60.570 42.308 0.00 0.00 0.00 2.59
451 7436 3.381272 CACGCCTTCCATTCCATGTTAAT 59.619 43.478 0.00 0.00 0.00 1.40
453 7438 2.364632 CACGCCTTCCATTCCATGTTA 58.635 47.619 0.00 0.00 0.00 2.41
455 7440 0.680921 CCACGCCTTCCATTCCATGT 60.681 55.000 0.00 0.00 0.00 3.21
456 7441 0.680921 ACCACGCCTTCCATTCCATG 60.681 55.000 0.00 0.00 0.00 3.66
458 7443 0.608035 GAACCACGCCTTCCATTCCA 60.608 55.000 0.00 0.00 0.00 3.53
459 7444 0.322546 AGAACCACGCCTTCCATTCC 60.323 55.000 0.00 0.00 0.00 3.01
460 7445 1.200020 CAAGAACCACGCCTTCCATTC 59.800 52.381 0.00 0.00 0.00 2.67
666 7665 1.064946 CCGCTCGTCCTCATCAGAC 59.935 63.158 0.00 0.00 0.00 3.51
722 7721 1.745320 CTCCGCGCCCAACCTAGTAT 61.745 60.000 0.00 0.00 0.00 2.12
754 7753 0.040067 CTTGAAAACTCGCCACTGGC 60.040 55.000 10.35 10.35 46.75 4.85
831 7831 2.465920 CGCGAGCAGTTTCACGTC 59.534 61.111 0.00 0.00 0.00 4.34
914 7961 1.104630 GGGAAGACGACGAGAGGATT 58.895 55.000 0.00 0.00 0.00 3.01
938 7985 2.922503 GGTTTGGCCTTGTGGGGG 60.923 66.667 3.32 0.00 35.12 5.40
943 7990 1.126948 CCAATGGGGTTTGGCCTTGT 61.127 55.000 3.32 0.00 39.76 3.16
944 7991 1.678724 CCAATGGGGTTTGGCCTTG 59.321 57.895 3.32 0.00 39.76 3.61
945 7992 4.231140 CCAATGGGGTTTGGCCTT 57.769 55.556 3.32 0.00 39.76 4.35
950 7997 2.664398 GCTGGCCAATGGGGTTTG 59.336 61.111 7.01 0.00 39.65 2.93
951 7998 2.607442 GGCTGGCCAATGGGGTTT 60.607 61.111 7.01 0.00 39.65 3.27
952 7999 3.926214 TGGCTGGCCAATGGGGTT 61.926 61.111 12.27 0.00 44.12 4.11
973 8020 2.101770 CGGGTTCGTCCTAGTCGC 59.898 66.667 0.00 0.00 36.25 5.19
1117 8164 2.799917 CGATAGGCCTCAGAAACCGAAG 60.800 54.545 9.68 0.00 0.00 3.79
1121 8168 0.876342 CGCGATAGGCCTCAGAAACC 60.876 60.000 9.68 0.00 38.94 3.27
1134 8181 1.400888 CCTGCAAAAACAAGCGCGATA 60.401 47.619 12.10 0.00 0.00 2.92
1207 8254 3.198872 CTGAAGAAACGGATAGGGAAGC 58.801 50.000 0.00 0.00 0.00 3.86
1233 8340 9.211485 AGGAGAGAAAATTAAAACGACGAATTA 57.789 29.630 0.00 0.00 0.00 1.40
1235 8342 7.411588 CGAGGAGAGAAAATTAAAACGACGAAT 60.412 37.037 0.00 0.00 0.00 3.34
1236 8343 6.129009 CGAGGAGAGAAAATTAAAACGACGAA 60.129 38.462 0.00 0.00 0.00 3.85
1237 8344 5.344128 CGAGGAGAGAAAATTAAAACGACGA 59.656 40.000 0.00 0.00 0.00 4.20
1247 8373 8.848474 TTCAAATTAGACGAGGAGAGAAAATT 57.152 30.769 0.00 0.00 0.00 1.82
1248 8374 9.103861 GATTCAAATTAGACGAGGAGAGAAAAT 57.896 33.333 0.00 0.00 0.00 1.82
1276 8405 3.197790 CACATTCGCCGCCTGAGG 61.198 66.667 0.00 0.00 0.00 3.86
1328 8460 5.183014 AGAAAACATCGAAAACCTTCACC 57.817 39.130 0.00 0.00 0.00 4.02
1390 8522 1.611673 CCTGCAATGAACCCGTTCTCT 60.612 52.381 8.91 0.00 40.14 3.10
1603 8883 1.294659 GCTCTGCTCACCGGTCAAAG 61.295 60.000 2.59 3.63 0.00 2.77
1646 8926 1.066787 GCTCACCACCACTTAGTCCTC 60.067 57.143 0.00 0.00 0.00 3.71
1705 9107 5.331876 AGAACTTGCTCTGTATGGAGTAC 57.668 43.478 0.00 0.00 35.89 2.73
1709 9111 5.016831 TGAGTAGAACTTGCTCTGTATGGA 58.983 41.667 0.00 0.00 0.00 3.41
1710 9112 5.105752 GTGAGTAGAACTTGCTCTGTATGG 58.894 45.833 0.00 0.00 0.00 2.74
1711 9113 5.714047 TGTGAGTAGAACTTGCTCTGTATG 58.286 41.667 0.00 0.00 0.00 2.39
1731 9133 6.500910 ACATGTGCAGCATTTTATAGATGTG 58.499 36.000 0.00 0.00 35.19 3.21
1763 10618 8.876790 CGTGATCTATATATGCAATGTGACAAT 58.123 33.333 0.00 0.00 0.00 2.71
1788 10644 7.141100 TCCATCTTTTAGGCTTAGAAAAACG 57.859 36.000 0.00 0.00 0.00 3.60
1942 10799 9.710818 AGATATATACCCCGTTACAACTATCAT 57.289 33.333 0.00 0.00 0.00 2.45
2000 10857 7.210174 TGCACACCAGAATATCACTCTATAAC 58.790 38.462 0.00 0.00 0.00 1.89
2009 10866 3.947196 GGATGTTGCACACCAGAATATCA 59.053 43.478 0.00 0.00 0.00 2.15
2019 10876 1.549203 AAGATGGGGATGTTGCACAC 58.451 50.000 0.00 0.00 0.00 3.82
2272 11221 6.537301 GGAAGAACCGGAAATGAAAAAGTTTT 59.463 34.615 9.46 0.00 0.00 2.43
2277 11226 5.799827 ATGGAAGAACCGGAAATGAAAAA 57.200 34.783 9.46 0.00 42.61 1.94
2278 11227 5.799827 AATGGAAGAACCGGAAATGAAAA 57.200 34.783 9.46 0.00 42.61 2.29
2287 11237 6.542370 AGAACACATATAAATGGAAGAACCGG 59.458 38.462 0.00 0.00 42.61 5.28
2304 11254 8.454106 GCACAAGACTTGATAATAAGAACACAT 58.546 33.333 21.95 0.00 0.00 3.21
2305 11255 7.094805 GGCACAAGACTTGATAATAAGAACACA 60.095 37.037 21.95 0.00 0.00 3.72
2377 11354 3.815401 TGTCTTCAGAAAGCCTGCTTAAC 59.185 43.478 4.57 3.19 42.62 2.01
2503 11480 6.845758 TGTAGCTGGTACTTACATGTTAGT 57.154 37.500 20.27 20.27 32.19 2.24
2536 11513 5.639506 GCTTGAGTTGTATGCTGAGTAAAGA 59.360 40.000 0.00 0.00 0.00 2.52
2612 11852 0.382873 TACGCACGACAGCCGATATT 59.617 50.000 0.00 0.00 41.76 1.28
2719 11959 8.137437 CCTATGCTCATTAACAAATCGGAAAAT 58.863 33.333 0.00 0.00 0.00 1.82
2724 11964 6.618287 TTCCTATGCTCATTAACAAATCGG 57.382 37.500 0.00 0.00 0.00 4.18
2725 11965 6.017605 AGCTTCCTATGCTCATTAACAAATCG 60.018 38.462 0.00 0.00 35.67 3.34
2748 11988 2.602257 AAGCAAGGTTTCACCAAAGC 57.398 45.000 0.00 0.00 41.95 3.51
2764 12005 9.143631 TCTGTAAACCGTTAGAGTAATTAAAGC 57.856 33.333 0.00 0.00 33.37 3.51
2827 12069 4.137543 CAAGGATTCTACCCTATGGTTGC 58.862 47.826 0.00 0.00 44.75 4.17
3023 12265 6.644592 GCAAAATGGTGCTATTTTCTTACACA 59.355 34.615 3.76 0.00 41.51 3.72
3135 12378 7.484641 CCATAAATAACAACAATGACAACCGAG 59.515 37.037 0.00 0.00 0.00 4.63
3278 12530 1.482593 AGAGGAATACTGGGTTCAGCG 59.517 52.381 0.00 0.00 44.59 5.18
3279 12531 3.636153 AAGAGGAATACTGGGTTCAGC 57.364 47.619 0.00 0.00 44.59 4.26
3298 12551 9.537192 CCGACTTGTATATTTCCACTTGTATAA 57.463 33.333 0.00 0.00 0.00 0.98
3299 12552 8.698210 ACCGACTTGTATATTTCCACTTGTATA 58.302 33.333 0.00 0.00 0.00 1.47
3306 12564 9.316730 TGTTATAACCGACTTGTATATTTCCAC 57.683 33.333 13.01 0.00 0.00 4.02
3314 12572 8.447833 CACAACATTGTTATAACCGACTTGTAT 58.552 33.333 13.01 0.71 39.91 2.29
3340 12601 0.034089 AACAGAGGTGCCCCTTATGC 60.034 55.000 0.00 0.00 42.86 3.14
3341 12602 2.514458 AAACAGAGGTGCCCCTTATG 57.486 50.000 0.00 0.00 42.86 1.90
3379 12640 6.660521 TGAATTGTTCAGAAAGGTCAGCATAT 59.339 34.615 0.00 0.00 34.08 1.78
3414 12675 2.789917 GAGCCAACTGCATGCTCG 59.210 61.111 20.33 12.41 44.83 5.03
3418 12679 1.028330 ACCGATGAGCCAACTGCATG 61.028 55.000 0.00 0.00 44.83 4.06
3432 12693 1.949847 CTGACAAGGCCGAGACCGAT 61.950 60.000 0.00 0.00 38.22 4.18
3441 12702 4.150897 TGTGTATAATCCTGACAAGGCC 57.849 45.455 0.00 0.00 44.11 5.19
3498 12759 5.334646 GGAAATACGGTCAAGAAGTTGGAAC 60.335 44.000 0.00 0.00 34.09 3.62
3590 12851 9.173021 GGTATTGCATACAACATAGGCATAATA 57.827 33.333 0.00 0.00 38.99 0.98
3624 12885 7.498570 GCAAAATGGAAGGAAATGGCAATAATA 59.501 33.333 0.00 0.00 0.00 0.98
3632 12893 3.998341 CACAGCAAAATGGAAGGAAATGG 59.002 43.478 0.00 0.00 0.00 3.16
3655 12916 7.693951 CCAAGAAAGCTAATAGACAATGAAACG 59.306 37.037 0.00 0.00 0.00 3.60
3692 12956 6.564709 TGTAAGGTACCGCATACTACATAG 57.435 41.667 19.56 0.00 33.87 2.23
3697 12961 8.413309 AGAATAATGTAAGGTACCGCATACTA 57.587 34.615 19.56 11.35 33.87 1.82
3822 13213 5.548181 AAGAGCATGAGAGATAAGCATGA 57.452 39.130 0.00 0.00 41.35 3.07
3881 13272 6.811253 TTGAAAGTGTGTTTCAGTAAGTGT 57.189 33.333 0.86 0.00 39.30 3.55
3935 13806 6.820459 TGAAATATTGATGACACGCGATATG 58.180 36.000 15.93 2.56 0.00 1.78
3940 13811 3.303329 CCCTGAAATATTGATGACACGCG 60.303 47.826 3.53 3.53 0.00 6.01
4096 13996 2.164422 GCAGCAGAATGTAAGAAACCCC 59.836 50.000 0.00 0.00 39.31 4.95
4113 14013 4.889832 ATTTGCTATTGTAGTCTGCAGC 57.110 40.909 9.47 4.26 35.02 5.25
4341 14710 5.998454 ATCCATAAGCAATGTTCTCTTCG 57.002 39.130 0.00 0.00 33.34 3.79
4368 14737 3.695606 TCGGAGCTCGCTTTGCCT 61.696 61.111 7.83 0.00 39.05 4.75
4479 14854 0.539438 TTCGCCATTTTCTGCACCCT 60.539 50.000 0.00 0.00 0.00 4.34
4705 15080 2.664402 ACAGTTCAGGAGTTGGCAAT 57.336 45.000 1.92 0.00 0.00 3.56
4724 15101 9.535878 AGTAAATAAACGGCTGAAAATTTGAAA 57.464 25.926 0.00 0.00 0.00 2.69
4754 15131 0.817634 TCCTGTGGCAAACAAGACCG 60.818 55.000 0.00 0.00 38.67 4.79
4755 15132 0.668535 GTCCTGTGGCAAACAAGACC 59.331 55.000 8.59 0.00 42.26 3.85
4756 15133 0.307760 CGTCCTGTGGCAAACAAGAC 59.692 55.000 9.41 9.41 43.90 3.01
4759 15136 1.315981 TTGCGTCCTGTGGCAAACAA 61.316 50.000 0.00 0.00 45.34 2.83
4761 15138 3.115556 TTGCGTCCTGTGGCAAAC 58.884 55.556 0.00 0.00 45.34 2.93
4873 15264 3.069980 GCCGCTCTCCACGATCTGT 62.070 63.158 0.00 0.00 0.00 3.41
4931 15322 2.608988 CTGCCTCCTCACCAGGGT 60.609 66.667 0.00 0.00 40.80 4.34
4941 15332 3.745803 GCAACTGCAGCTGCCTCC 61.746 66.667 34.64 15.16 41.18 4.30
4972 15363 2.604382 GCTGCCCCATTGGTGGTT 60.604 61.111 1.20 0.00 44.48 3.67
4976 15367 4.431131 CTCGGCTGCCCCATTGGT 62.431 66.667 14.12 0.00 36.04 3.67
4993 15384 0.594602 GGCCGTTAACAGGTTCAACC 59.405 55.000 0.00 0.00 38.99 3.77
5008 15399 0.668535 TGATCGATCACTAGTGGCCG 59.331 55.000 23.99 22.70 0.00 6.13
5026 15432 1.817099 GCGGGGAAGAGTGAGCATG 60.817 63.158 0.00 0.00 0.00 4.06
5030 15436 0.895530 TAACTGCGGGGAAGAGTGAG 59.104 55.000 0.00 0.00 0.00 3.51
5033 15439 0.036294 GCTTAACTGCGGGGAAGAGT 60.036 55.000 11.72 0.00 0.00 3.24
5037 15443 0.887387 GTGTGCTTAACTGCGGGGAA 60.887 55.000 0.00 0.00 35.36 3.97
5047 15453 0.109964 GCGAAATGGCGTGTGCTTAA 60.110 50.000 0.00 0.00 42.25 1.85
5056 15462 2.651863 GCGGAATGCGAAATGGCG 60.652 61.111 0.00 0.00 35.06 5.69
5066 15472 3.797039 TGGAGTTATTCAGAGCGGAATG 58.203 45.455 10.35 0.00 37.98 2.67
5102 15508 1.134098 AGAGAAACAGTGTGTGTGGGG 60.134 52.381 0.00 0.00 40.26 4.96
5103 15509 2.213499 GAGAGAAACAGTGTGTGTGGG 58.787 52.381 0.00 0.00 40.26 4.61
5142 15548 1.483827 ACACCAGCATCATCGATCACT 59.516 47.619 0.00 0.00 0.00 3.41
5145 15551 2.297315 TCCTACACCAGCATCATCGATC 59.703 50.000 0.00 0.00 0.00 3.69
5146 15552 2.036475 GTCCTACACCAGCATCATCGAT 59.964 50.000 0.00 0.00 0.00 3.59
5147 15553 1.409064 GTCCTACACCAGCATCATCGA 59.591 52.381 0.00 0.00 0.00 3.59
5148 15554 1.539065 GGTCCTACACCAGCATCATCG 60.539 57.143 0.00 0.00 45.98 3.84
5149 15555 2.246719 GGTCCTACACCAGCATCATC 57.753 55.000 0.00 0.00 45.98 2.92
5158 15564 1.080025 GCACTCACGGTCCTACACC 60.080 63.158 0.00 0.00 42.69 4.16
5161 15567 3.026288 ACAGTGCACTCACGGTCCTAC 62.026 57.143 18.64 0.00 46.11 3.18
5168 15575 8.397661 GCAATTAGCTATACAGTGCACTCACG 62.398 46.154 18.64 8.93 43.42 4.35
5183 15597 0.391927 AACGCACGGGCAATTAGCTA 60.392 50.000 11.77 0.00 44.79 3.32
5196 15610 5.796350 ATTATTCACTCCTTGTAACGCAC 57.204 39.130 0.00 0.00 0.00 5.34
5302 15718 3.568538 TCGGCTTCTTTACGTACACTTC 58.431 45.455 0.00 0.00 0.00 3.01
5303 15719 3.254166 TCTCGGCTTCTTTACGTACACTT 59.746 43.478 0.00 0.00 0.00 3.16
5309 15725 0.109412 CGGTCTCGGCTTCTTTACGT 60.109 55.000 0.00 0.00 0.00 3.57
5310 15726 0.109412 ACGGTCTCGGCTTCTTTACG 60.109 55.000 0.00 0.00 41.39 3.18
5349 16293 9.672086 GTACATCTCAAGCTAAATAGTAGAGTG 57.328 37.037 0.00 0.00 0.00 3.51
5374 16319 9.733556 TTAGTTGATAAAGTAACCATGTGATGT 57.266 29.630 0.00 0.00 0.00 3.06
5392 16337 7.600375 CACTTGATCTGTACACAGTTAGTTGAT 59.400 37.037 9.11 0.00 44.12 2.57
5393 16338 6.923508 CACTTGATCTGTACACAGTTAGTTGA 59.076 38.462 9.11 0.00 44.12 3.18
5402 16347 4.890158 ATGTCCACTTGATCTGTACACA 57.110 40.909 0.00 0.61 0.00 3.72
5410 16355 6.823689 AGTTTGGTGTATATGTCCACTTGATC 59.176 38.462 0.00 0.00 0.00 2.92
5470 16418 8.801913 GTGTCAACTTTAATCCTACGTATACAC 58.198 37.037 3.32 0.00 0.00 2.90
5485 16433 3.327757 AGATGCCCTCAGTGTCAACTTTA 59.672 43.478 0.00 0.00 32.98 1.85
5560 16508 2.268298 GCACTATTGTACGTGGACTGG 58.732 52.381 0.00 0.00 0.00 4.00
5562 16510 1.814394 TCGCACTATTGTACGTGGACT 59.186 47.619 0.00 0.00 34.77 3.85
5568 16516 1.006391 CGGCTTTCGCACTATTGTACG 60.006 52.381 0.00 0.00 38.10 3.67
5569 16517 1.326548 CCGGCTTTCGCACTATTGTAC 59.673 52.381 0.00 0.00 38.10 2.90
5574 16522 2.513897 GGCCGGCTTTCGCACTAT 60.514 61.111 28.56 0.00 38.10 2.12
5582 16530 0.324645 AAGATTGGATGGCCGGCTTT 60.325 50.000 28.56 14.45 36.79 3.51
5598 16546 7.336931 GCAGAGACAAATATTTAAGGGACAAGA 59.663 37.037 0.00 0.00 0.00 3.02
5613 16561 4.759183 GGACTTGAAGAAGCAGAGACAAAT 59.241 41.667 0.00 0.00 31.68 2.32
5627 16575 6.650807 TGCTATTAAGTGTTCTGGACTTGAAG 59.349 38.462 0.00 0.00 35.30 3.02
5630 16578 6.992063 ATGCTATTAAGTGTTCTGGACTTG 57.008 37.500 0.00 0.00 35.30 3.16
5667 16623 5.167803 CGTCGCATTTGAATATTTTCACTCG 59.832 40.000 0.00 1.29 41.50 4.18
5761 16717 5.754782 AGGGACAACTGAAACATATATGCA 58.245 37.500 12.79 2.30 0.00 3.96
5779 16735 8.154856 TGAGTATATGTAGGCAATTAAAGGGAC 58.845 37.037 0.00 0.00 0.00 4.46
5801 16758 6.373774 CAGCTCAAGGTAAAGATTGATTGAGT 59.626 38.462 12.70 0.33 43.42 3.41
5814 16771 2.568956 ACTCATGAGCAGCTCAAGGTAA 59.431 45.455 28.78 8.17 44.04 2.85
5816 16773 0.982704 ACTCATGAGCAGCTCAAGGT 59.017 50.000 28.78 21.94 44.04 3.50
5824 16781 1.593469 CATCGAGCAACTCATGAGCAG 59.407 52.381 22.83 15.71 0.00 4.24
5846 16803 7.804843 TTGTCCAAATGCATCAAGAAATTTT 57.195 28.000 0.00 0.00 0.00 1.82
5943 16900 2.103941 GGATGAGGTGAAGATCCTGTCC 59.896 54.545 0.00 0.00 35.20 4.02
5985 16943 5.220796 GGAGATGATGACATGTTGTGTGATG 60.221 44.000 0.00 0.00 42.36 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.