Multiple sequence alignment - TraesCS5D01G402100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G402100 chr5D 100.000 5160 0 0 320 5479 467772413 467777572 0.000000e+00 9529.0
1 TraesCS5D01G402100 chr5D 100.000 157 0 0 1 157 467772094 467772250 1.930000e-74 291.0
2 TraesCS5D01G402100 chr5D 80.617 227 38 6 5170 5395 298721832 298722053 2.620000e-38 171.0
3 TraesCS5D01G402100 chr5D 97.619 42 0 1 5167 5208 387716553 387716593 2.740000e-08 71.3
4 TraesCS5D01G402100 chr5A 93.652 2804 133 22 320 3092 588548291 588551080 0.000000e+00 4150.0
5 TraesCS5D01G402100 chr5A 93.087 1056 46 12 3212 4247 588551241 588552289 0.000000e+00 1520.0
6 TraesCS5D01G402100 chr5A 91.746 630 39 7 4373 5001 588552456 588553073 0.000000e+00 863.0
7 TraesCS5D01G402100 chr5A 92.053 151 11 1 7 157 588548073 588548222 1.550000e-50 211.0
8 TraesCS5D01G402100 chr5A 80.400 250 30 12 5229 5476 588553570 588553802 7.300000e-39 172.0
9 TraesCS5D01G402100 chr5A 92.308 78 4 2 3138 3214 588551084 588551160 5.800000e-20 110.0
10 TraesCS5D01G402100 chr5A 80.153 131 23 3 5171 5301 456065148 456065275 1.620000e-15 95.3
11 TraesCS5D01G402100 chr5A 92.982 57 4 0 3056 3112 707705972 707706028 3.520000e-12 84.2
12 TraesCS5D01G402100 chr5B 92.202 2180 110 27 320 2458 574903543 574905703 0.000000e+00 3029.0
13 TraesCS5D01G402100 chr5B 92.402 816 26 9 4334 5143 574907705 574908490 0.000000e+00 1131.0
14 TraesCS5D01G402100 chr5B 89.558 747 52 15 3437 4174 574906740 574907469 0.000000e+00 924.0
15 TraesCS5D01G402100 chr5B 92.199 564 32 7 2454 3010 574905767 574906325 0.000000e+00 787.0
16 TraesCS5D01G402100 chr5B 93.617 235 13 2 5245 5479 574908534 574908766 3.140000e-92 350.0
17 TraesCS5D01G402100 chr5B 92.357 157 11 1 1 157 574903319 574903474 7.140000e-54 222.0
18 TraesCS5D01G402100 chr5B 82.500 160 26 2 5173 5332 536684007 536684164 7.400000e-29 139.0
19 TraesCS5D01G402100 chr7B 88.372 86 8 1 3059 3142 208662019 208661934 9.710000e-18 102.0
20 TraesCS5D01G402100 chr3D 86.813 91 10 1 3054 3142 7258126 7258036 3.490000e-17 100.0
21 TraesCS5D01G402100 chr3D 94.000 50 2 1 3055 3104 11578653 11578605 2.120000e-09 75.0
22 TraesCS5D01G402100 chr2B 88.571 70 8 0 3056 3125 790607343 790607412 9.780000e-13 86.1
23 TraesCS5D01G402100 chr2B 80.233 86 15 2 3060 3143 648037208 648037123 4.580000e-06 63.9
24 TraesCS5D01G402100 chr4A 84.270 89 10 2 3056 3142 546610339 546610253 3.520000e-12 84.2
25 TraesCS5D01G402100 chr4A 83.146 89 11 2 3056 3142 546636406 546636320 1.640000e-10 78.7
26 TraesCS5D01G402100 chr7A 80.392 102 16 4 5190 5290 126738274 126738372 2.120000e-09 75.0
27 TraesCS5D01G402100 chr6A 86.667 60 8 0 5335 5394 498950064 498950005 3.540000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G402100 chr5D 467772094 467777572 5478 False 4910.000000 9529 100.000000 1 5479 2 chr5D.!!$F3 5478
1 TraesCS5D01G402100 chr5A 588548073 588553802 5729 False 1171.000000 4150 90.541000 7 5476 6 chr5A.!!$F3 5469
2 TraesCS5D01G402100 chr5B 574903319 574908766 5447 False 1073.833333 3029 92.055833 1 5479 6 chr5B.!!$F2 5478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 443 0.823460 ACAAGGGTGGTGTTGCAAAG 59.177 50.000 0.00 0.00 0.00 2.77 F
493 494 1.001974 TCTTCGAGGTGGTTGACATGG 59.998 52.381 0.00 0.00 0.00 3.66 F
1608 1656 0.861837 CGACTTCGCTCAAGCTTGTT 59.138 50.000 25.19 3.27 39.32 2.83 F
1659 1707 1.076777 TGCCCTTGCTAATGGCCTC 60.077 57.895 3.32 0.00 44.72 4.70 F
2420 2487 2.528564 ACCATGATCAAGTGGTTTGGG 58.471 47.619 14.15 1.80 46.22 4.12 F
4142 4522 2.430694 TCCTGCTGCACTGTCGTATATT 59.569 45.455 0.00 0.00 0.00 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 1656 0.034476 CTGACAGCTGAAGTGGCTCA 59.966 55.0 23.35 10.74 38.03 4.26 R
1748 1796 1.105457 AGCACAACTCTTTGCAGCAA 58.895 45.0 2.83 2.83 41.48 3.91 R
3460 3828 0.609662 GGGGGTTGAACGCTACAGTA 59.390 55.0 12.19 0.00 0.00 2.74 R
3481 3849 4.347583 AGCATCCCCAGAAAAATTGAACAA 59.652 37.5 0.00 0.00 0.00 2.83 R
4174 4556 0.185901 AGCACATTCCACCCAACTGT 59.814 50.0 0.00 0.00 0.00 3.55 R
5311 6203 0.094730 CTTCGTCCGATTGAAACGCC 59.905 55.0 3.67 0.00 36.40 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 2.421619 CTGGCTCCTGAAGAAGACAAC 58.578 52.381 0.00 0.00 0.00 3.32
101 102 2.038295 CTGGCTCCTGAAGAAGACAACT 59.962 50.000 0.00 0.00 0.00 3.16
394 395 1.811266 CGTAGCCGCTCTGCAACAT 60.811 57.895 0.00 0.00 0.00 2.71
398 399 1.745115 GCCGCTCTGCAACATACCA 60.745 57.895 0.00 0.00 0.00 3.25
402 403 2.616960 CGCTCTGCAACATACCAACTA 58.383 47.619 0.00 0.00 0.00 2.24
414 415 7.170658 GCAACATACCAACTATTGCTTTTGAAA 59.829 33.333 0.00 0.00 41.88 2.69
442 443 0.823460 ACAAGGGTGGTGTTGCAAAG 59.177 50.000 0.00 0.00 0.00 2.77
446 447 1.391157 GGGTGGTGTTGCAAAGCTGA 61.391 55.000 0.00 0.00 0.00 4.26
486 487 2.342648 GCGGTCTTCGAGGTGGTT 59.657 61.111 0.00 0.00 42.43 3.67
491 492 1.002087 GGTCTTCGAGGTGGTTGACAT 59.998 52.381 0.00 0.00 0.00 3.06
493 494 1.001974 TCTTCGAGGTGGTTGACATGG 59.998 52.381 0.00 0.00 0.00 3.66
563 570 5.789574 ATACCTCATCACCAGGGTTTTTA 57.210 39.130 0.00 0.00 35.01 1.52
648 658 2.357517 CACGCCGCATATCTCCCC 60.358 66.667 0.00 0.00 0.00 4.81
1083 1117 3.391382 AAGTAAGCGCCCGCCTCT 61.391 61.111 2.29 2.84 43.17 3.69
1087 1121 2.656069 TAAGCGCCCGCCTCTTCTT 61.656 57.895 2.29 0.00 43.17 2.52
1088 1122 2.180159 TAAGCGCCCGCCTCTTCTTT 62.180 55.000 2.29 0.00 43.17 2.52
1089 1123 3.056328 GCGCCCGCCTCTTCTTTT 61.056 61.111 0.00 0.00 34.56 2.27
1090 1124 2.626780 GCGCCCGCCTCTTCTTTTT 61.627 57.895 0.00 0.00 34.56 1.94
1106 1140 3.556298 TTTTCTCCGCCGTTCCCCC 62.556 63.158 0.00 0.00 0.00 5.40
1156 1195 4.043037 GGTACCTAGTTGTCAATCTCCG 57.957 50.000 4.06 0.00 0.00 4.63
1225 1267 1.671054 GAACTTGCCGTGGCTGCTA 60.671 57.895 12.84 0.00 42.51 3.49
1290 1332 1.339929 GGCTTCTAGGTAGCTCTCTGC 59.660 57.143 14.66 0.00 38.67 4.26
1515 1563 3.075005 GTGCCTGGGCTCTACCGA 61.075 66.667 13.05 0.00 42.51 4.69
1608 1656 0.861837 CGACTTCGCTCAAGCTTGTT 59.138 50.000 25.19 3.27 39.32 2.83
1659 1707 1.076777 TGCCCTTGCTAATGGCCTC 60.077 57.895 3.32 0.00 44.72 4.70
1692 1740 2.993840 TCTCTGTGCTCGCAGGCT 60.994 61.111 10.17 0.00 37.12 4.58
1695 1743 3.117171 CTGTGCTCGCAGGCTGTC 61.117 66.667 17.16 7.59 33.11 3.51
1748 1796 2.893424 AGCCATTTCCAGTTTCCATGT 58.107 42.857 0.00 0.00 0.00 3.21
1775 1823 4.097741 TGCAAAGAGTTGTGCTATGTTTGT 59.902 37.500 0.00 0.00 41.48 2.83
1785 1833 5.804639 TGTGCTATGTTTGTCAGATTAGGT 58.195 37.500 0.00 0.00 0.00 3.08
2044 2092 6.099845 AGGTTAGTAGTGATGGTCTAATTGGG 59.900 42.308 0.00 0.00 0.00 4.12
2063 2111 5.353394 TGGGTTATCGCTATGTTTCTCTT 57.647 39.130 0.00 0.00 0.00 2.85
2163 2222 5.902613 ATTTTGGCAATTTCGATCTCTGA 57.097 34.783 0.00 0.00 0.00 3.27
2246 2313 4.037923 TCCATCTTTTGCTTTCCTGTTGTC 59.962 41.667 0.00 0.00 0.00 3.18
2250 2317 4.402155 TCTTTTGCTTTCCTGTTGTCATGT 59.598 37.500 0.00 0.00 0.00 3.21
2287 2354 9.122779 CCAATAATCCCAAAGTACGGTTTTATA 57.877 33.333 0.00 0.00 0.00 0.98
2352 2419 2.694628 TGTGCTCTGGTTGATTTGCTTT 59.305 40.909 0.00 0.00 0.00 3.51
2372 2439 8.477984 TGCTTTGGTAATCTTTTCATATTTGC 57.522 30.769 0.00 0.00 0.00 3.68
2373 2440 7.275341 TGCTTTGGTAATCTTTTCATATTTGCG 59.725 33.333 0.00 0.00 0.00 4.85
2420 2487 2.528564 ACCATGATCAAGTGGTTTGGG 58.471 47.619 14.15 1.80 46.22 4.12
2441 2509 9.976511 TTTGGGTTATATAATACTTCTCAGACG 57.023 33.333 0.00 0.00 0.00 4.18
2799 2940 5.588246 TGATTATTGTCGCTTATTTCTGCCA 59.412 36.000 0.00 0.00 0.00 4.92
2843 2985 6.267471 TCATTTTTCAAGACTGCCCTTGTAAT 59.733 34.615 9.45 6.55 42.95 1.89
2890 3032 7.605691 GCTGATGCCATTAAGATGTCTATAACT 59.394 37.037 0.00 0.00 0.00 2.24
2918 3061 7.894708 ACTCCATCATCAGAATATCAGTACAG 58.105 38.462 0.00 0.00 0.00 2.74
2965 3108 4.051237 GGGCATTTTGTCTTGAAGTTCAC 58.949 43.478 4.68 0.00 0.00 3.18
2967 3110 5.009610 GGGCATTTTGTCTTGAAGTTCACTA 59.990 40.000 4.68 0.00 0.00 2.74
2974 3117 6.174720 TGTCTTGAAGTTCACTAATGTCCT 57.825 37.500 4.68 0.00 0.00 3.85
2982 3125 7.226720 TGAAGTTCACTAATGTCCTTCTGAAAC 59.773 37.037 0.08 0.00 35.98 2.78
2996 3140 8.900781 GTCCTTCTGAAACCTAAGTAACTTTTT 58.099 33.333 0.00 0.00 0.00 1.94
3065 3280 5.785940 AGGAACACAGTCTTTATTACTCCCT 59.214 40.000 0.00 0.00 0.00 4.20
3082 3297 4.130118 CTCCCTCCGATCCAAAATAAGTG 58.870 47.826 0.00 0.00 0.00 3.16
3092 3307 7.148154 CCGATCCAAAATAAGTGTCATGGTTTA 60.148 37.037 0.00 0.00 0.00 2.01
3093 3308 8.405531 CGATCCAAAATAAGTGTCATGGTTTAT 58.594 33.333 0.00 0.00 0.00 1.40
3094 3309 9.520204 GATCCAAAATAAGTGTCATGGTTTATG 57.480 33.333 0.00 0.00 38.17 1.90
3095 3310 8.415950 TCCAAAATAAGTGTCATGGTTTATGT 57.584 30.769 0.00 0.00 38.01 2.29
3096 3311 8.865090 TCCAAAATAAGTGTCATGGTTTATGTT 58.135 29.630 0.00 0.00 38.01 2.71
3097 3312 9.139174 CCAAAATAAGTGTCATGGTTTATGTTC 57.861 33.333 0.00 0.00 38.01 3.18
3098 3313 9.689976 CAAAATAAGTGTCATGGTTTATGTTCA 57.310 29.630 0.00 0.00 38.01 3.18
3104 3319 8.592105 AGTGTCATGGTTTATGTTCAAATTTG 57.408 30.769 12.15 12.15 38.01 2.32
3105 3320 8.420222 AGTGTCATGGTTTATGTTCAAATTTGA 58.580 29.630 16.91 16.91 38.01 2.69
3106 3321 9.039870 GTGTCATGGTTTATGTTCAAATTTGAA 57.960 29.630 26.01 26.01 38.88 2.69
3118 3333 6.477053 TTCAAATTTGAACTGGAACCATGA 57.523 33.333 26.01 3.20 41.88 3.07
3119 3334 5.841810 TCAAATTTGAACTGGAACCATGAC 58.158 37.500 18.45 0.00 33.55 3.06
3120 3335 5.362143 TCAAATTTGAACTGGAACCATGACA 59.638 36.000 18.45 0.00 33.55 3.58
3121 3336 4.853924 ATTTGAACTGGAACCATGACAC 57.146 40.909 0.00 0.00 0.00 3.67
3122 3337 3.576078 TTGAACTGGAACCATGACACT 57.424 42.857 0.00 0.00 0.00 3.55
3123 3338 3.576078 TGAACTGGAACCATGACACTT 57.424 42.857 0.00 0.00 0.00 3.16
3124 3339 4.698201 TGAACTGGAACCATGACACTTA 57.302 40.909 0.00 0.00 0.00 2.24
3125 3340 5.241403 TGAACTGGAACCATGACACTTAT 57.759 39.130 0.00 0.00 0.00 1.73
3126 3341 5.630121 TGAACTGGAACCATGACACTTATT 58.370 37.500 0.00 0.00 0.00 1.40
3127 3342 5.473162 TGAACTGGAACCATGACACTTATTG 59.527 40.000 0.00 0.00 0.00 1.90
3128 3343 4.335416 ACTGGAACCATGACACTTATTGG 58.665 43.478 0.00 0.00 35.31 3.16
3129 3344 4.042809 ACTGGAACCATGACACTTATTGGA 59.957 41.667 0.00 0.00 33.36 3.53
3130 3345 5.191727 TGGAACCATGACACTTATTGGAT 57.808 39.130 0.00 0.00 33.36 3.41
3131 3346 5.192927 TGGAACCATGACACTTATTGGATC 58.807 41.667 0.00 0.00 33.36 3.36
3132 3347 5.192927 GGAACCATGACACTTATTGGATCA 58.807 41.667 0.00 0.00 33.91 2.92
3133 3348 5.297776 GGAACCATGACACTTATTGGATCAG 59.702 44.000 0.00 0.00 33.91 2.90
3134 3349 5.698741 ACCATGACACTTATTGGATCAGA 57.301 39.130 0.00 0.00 33.36 3.27
3135 3350 5.678583 ACCATGACACTTATTGGATCAGAG 58.321 41.667 0.00 0.00 33.36 3.35
3136 3351 5.061853 CCATGACACTTATTGGATCAGAGG 58.938 45.833 0.00 0.00 0.00 3.69
3208 3432 7.255590 GGCAAGCCACTGTATGTAAATGAATAT 60.256 37.037 6.14 0.00 35.81 1.28
3256 3563 7.196187 AGTTATTATGGGGTCAAAAGGGAAAT 58.804 34.615 0.00 0.00 0.00 2.17
3342 3652 5.751243 TGTTGAAGTGGCTTAGAAGTTTC 57.249 39.130 0.00 0.00 0.00 2.78
3441 3809 6.803642 AGTGTCGAGTGTAGACTTTTAGTTT 58.196 36.000 0.00 0.00 39.24 2.66
3516 3885 5.332743 TCTGGGGATGCTTTAAGAAAATGT 58.667 37.500 0.00 0.00 0.00 2.71
4011 4388 4.084287 TGTAGGCTATACCATAACTCCCG 58.916 47.826 0.00 0.00 43.14 5.14
4059 4436 8.918202 AATACAATCTGAAACTGTGGAACTTA 57.082 30.769 1.91 0.00 38.04 2.24
4123 4503 5.479375 AGCACATTATGGATGATTGGATTCC 59.521 40.000 0.00 0.00 39.15 3.01
4142 4522 2.430694 TCCTGCTGCACTGTCGTATATT 59.569 45.455 0.00 0.00 0.00 1.28
4144 4524 3.190079 CTGCTGCACTGTCGTATATTGT 58.810 45.455 0.00 0.00 0.00 2.71
4145 4525 2.929398 TGCTGCACTGTCGTATATTGTG 59.071 45.455 0.00 0.00 0.00 3.33
4163 4545 5.638530 TTGTGGGAGTATTGGCATATACA 57.361 39.130 16.60 0.00 34.19 2.29
4174 4556 8.156820 AGTATTGGCATATACAGATAGCAAACA 58.843 33.333 16.60 0.00 34.19 2.83
4189 4571 2.802774 GCAAACACAGTTGGGTGGAATG 60.803 50.000 0.00 0.00 43.08 2.67
4191 4573 1.691196 ACACAGTTGGGTGGAATGTG 58.309 50.000 3.51 3.51 45.22 3.21
4193 4575 0.185901 ACAGTTGGGTGGAATGTGCT 59.814 50.000 0.00 0.00 0.00 4.40
4219 4613 0.393537 GCCTGATCTGTCTTGTGGGG 60.394 60.000 0.00 0.00 0.00 4.96
4225 4619 1.951209 TCTGTCTTGTGGGGCTATGA 58.049 50.000 0.00 0.00 0.00 2.15
4227 4621 1.556911 CTGTCTTGTGGGGCTATGACT 59.443 52.381 0.00 0.00 0.00 3.41
4243 4637 7.178628 GGGCTATGACTAGTGTATTCCTATTCA 59.821 40.741 0.00 0.00 31.34 2.57
4250 4644 9.694137 GACTAGTGTATTCCTATTCACAATACC 57.306 37.037 0.00 0.00 35.27 2.73
4251 4645 9.209048 ACTAGTGTATTCCTATTCACAATACCA 57.791 33.333 0.00 0.00 35.27 3.25
4284 4758 5.313712 AGGAGGGTTGTTTGTAGTTGTATG 58.686 41.667 0.00 0.00 0.00 2.39
4318 4792 8.275187 TGGAAGCTCCATAAGATATTCCTTTA 57.725 34.615 1.25 0.00 42.67 1.85
4320 4794 9.389755 GGAAGCTCCATAAGATATTCCTTTATC 57.610 37.037 0.00 0.00 36.62 1.75
4386 4898 6.364568 TCTCAAAACTTCCTCATCTGATCA 57.635 37.500 0.00 0.00 0.00 2.92
4407 4919 9.784531 TGATCAGAAACTATTCTTTGTTCTCTT 57.215 29.630 0.00 0.00 43.43 2.85
4424 4936 8.777578 TGTTCTCTTTATCCCTAACTATAGCA 57.222 34.615 0.00 0.00 0.00 3.49
4438 4950 7.442666 CCTAACTATAGCATCCTTCTGGTTTTC 59.557 40.741 0.00 0.00 34.23 2.29
4442 4954 1.272704 GCATCCTTCTGGTTTTCCCCT 60.273 52.381 0.00 0.00 39.73 4.79
4451 4963 1.302511 GTTTTCCCCTGCAGAGCGA 60.303 57.895 17.39 4.13 0.00 4.93
4484 4996 1.471829 TTGAAGAGGCCTGAGTCGCA 61.472 55.000 12.00 0.00 0.00 5.10
4536 5049 2.488153 GCTGGAATTTTTGTCGGTAGCT 59.512 45.455 0.00 0.00 0.00 3.32
4541 5054 4.915667 GGAATTTTTGTCGGTAGCTGAAAC 59.084 41.667 0.00 0.00 0.00 2.78
4579 5092 1.675641 GCATCAGTGACACCCACCC 60.676 63.158 0.84 0.00 46.87 4.61
4603 5116 2.558795 AGCTCTGTTTCTCGCTGACTTA 59.441 45.455 0.00 0.00 0.00 2.24
4853 5370 0.387622 GCAAGCTTCGCATTTGCTCA 60.388 50.000 13.73 0.00 42.84 4.26
4917 5435 0.933097 CGCATTGTCTGATCCCTTCG 59.067 55.000 0.00 0.00 0.00 3.79
5004 5538 4.226427 ACACATATCATCTTGCCAGTGT 57.774 40.909 0.00 0.00 34.47 3.55
5077 5611 1.134220 ACGAACAAGGAGAAGGCAACA 60.134 47.619 0.00 0.00 41.41 3.33
5145 5686 1.307647 CCATAGGCAGGCAAAGGGT 59.692 57.895 0.00 0.00 0.00 4.34
5150 5691 0.539669 AGGCAGGCAAAGGGTGTAAC 60.540 55.000 0.00 0.00 0.00 2.50
5166 5707 2.156917 GTAACCTTTTCCTCCCAACCG 58.843 52.381 0.00 0.00 0.00 4.44
5168 5709 0.109913 ACCTTTTCCTCCCAACCGTC 59.890 55.000 0.00 0.00 0.00 4.79
5196 6071 6.422100 TGCTGCTTCAACGATTTATAGATCTC 59.578 38.462 0.00 0.00 0.00 2.75
5215 6090 1.901085 GTCTCAAGGGGCGAGTGAT 59.099 57.895 0.00 0.00 0.00 3.06
5218 6093 2.103263 GTCTCAAGGGGCGAGTGATTAT 59.897 50.000 0.00 0.00 0.00 1.28
5219 6094 2.771943 TCTCAAGGGGCGAGTGATTATT 59.228 45.455 0.00 0.00 0.00 1.40
5220 6095 2.874701 CTCAAGGGGCGAGTGATTATTG 59.125 50.000 0.00 0.00 0.00 1.90
5222 6097 2.332063 AGGGGCGAGTGATTATTGTG 57.668 50.000 0.00 0.00 0.00 3.33
5223 6098 1.134098 AGGGGCGAGTGATTATTGTGG 60.134 52.381 0.00 0.00 0.00 4.17
5225 6100 1.940613 GGGCGAGTGATTATTGTGGTC 59.059 52.381 0.00 0.00 0.00 4.02
5226 6101 2.420129 GGGCGAGTGATTATTGTGGTCT 60.420 50.000 0.00 0.00 0.00 3.85
5241 6133 7.849322 ATTGTGGTCTTTAAAACCTGGTATT 57.151 32.000 0.00 0.00 37.69 1.89
5260 6152 4.073052 CAAGGGCGTTTGCAGGTA 57.927 55.556 0.00 0.00 45.35 3.08
5270 6162 2.084546 GTTTGCAGGTATCGCTTTCCT 58.915 47.619 0.00 0.00 0.00 3.36
5273 6165 3.620427 TGCAGGTATCGCTTTCCTTTA 57.380 42.857 0.00 0.00 0.00 1.85
5303 6195 5.302568 TGGTTCAGTGCATTTTTCAATCTCT 59.697 36.000 0.00 0.00 0.00 3.10
5310 6202 3.366273 GCATTTTTCAATCTCTGGCGTGA 60.366 43.478 0.00 0.00 0.00 4.35
5311 6203 4.409570 CATTTTTCAATCTCTGGCGTGAG 58.590 43.478 1.52 1.52 35.52 3.51
5326 6218 0.442699 GTGAGGCGTTTCAATCGGAC 59.557 55.000 0.00 0.00 0.00 4.79
5333 6225 2.055838 CGTTTCAATCGGACGAAGACA 58.944 47.619 0.00 0.00 38.99 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.978146 ACCTAGCCGGCTGATGAACT 60.978 55.000 38.98 12.97 35.61 3.01
81 82 2.050144 AGTTGTCTTCTTCAGGAGCCA 58.950 47.619 0.00 0.00 0.00 4.75
100 101 1.726853 GGTGGTCCACTCGAAATCAG 58.273 55.000 21.40 0.00 34.40 2.90
101 102 0.037697 CGGTGGTCCACTCGAAATCA 60.038 55.000 21.40 0.00 34.40 2.57
394 395 6.969993 ACCTTTCAAAAGCAATAGTTGGTA 57.030 33.333 0.00 0.00 41.14 3.25
398 399 6.112058 TGCAAACCTTTCAAAAGCAATAGTT 58.888 32.000 0.00 0.00 34.69 2.24
402 403 5.233957 GTTGCAAACCTTTCAAAAGCAAT 57.766 34.783 0.00 0.00 42.21 3.56
442 443 4.938080 TCAGAATCTAATCGAAGGTCAGC 58.062 43.478 0.00 0.00 0.00 4.26
446 447 5.510520 GCCTGATCAGAATCTAATCGAAGGT 60.511 44.000 24.62 0.00 32.75 3.50
491 492 1.344438 AGCGACTTCTGACATTGTCCA 59.656 47.619 14.05 2.13 0.00 4.02
493 494 2.665537 CTCAGCGACTTCTGACATTGTC 59.334 50.000 9.93 9.93 38.11 3.18
542 549 5.586155 TTAAAAACCCTGGTGATGAGGTA 57.414 39.130 0.00 0.00 30.63 3.08
648 658 3.163594 CCGTTTGCTTCGCTATTTTCTG 58.836 45.455 0.00 0.00 0.00 3.02
673 686 4.980805 TGTTGGGCTCCGTCGTGC 62.981 66.667 0.00 0.00 0.00 5.34
1087 1121 1.601477 GGGGAACGGCGGAGAAAAA 60.601 57.895 13.24 0.00 0.00 1.94
1088 1122 2.032987 GGGGAACGGCGGAGAAAA 59.967 61.111 13.24 0.00 0.00 2.29
1089 1123 4.024545 GGGGGAACGGCGGAGAAA 62.025 66.667 13.24 0.00 0.00 2.52
1106 1140 2.452813 CGAGACGGGGTGAATTGCG 61.453 63.158 0.00 0.00 0.00 4.85
1135 1169 3.737355 GCGGAGATTGACAACTAGGTACC 60.737 52.174 2.73 2.73 0.00 3.34
1139 1178 1.560923 CGCGGAGATTGACAACTAGG 58.439 55.000 0.00 0.00 0.00 3.02
1148 1187 4.918201 GGGGAGGCGCGGAGATTG 62.918 72.222 8.83 0.00 0.00 2.67
1290 1332 6.250819 CGCAGTTTCAGAACAATATACCAAG 58.749 40.000 0.00 0.00 38.26 3.61
1447 1495 2.592993 CCAGGGCGTTCCTCCTCAA 61.593 63.158 0.00 0.00 46.12 3.02
1515 1563 1.131303 TGATGACGGTCCCAAACCCT 61.131 55.000 5.55 0.00 46.27 4.34
1608 1656 0.034476 CTGACAGCTGAAGTGGCTCA 59.966 55.000 23.35 10.74 38.03 4.26
1659 1707 3.708734 GACGCCGTCAAACCACCG 61.709 66.667 13.23 0.00 32.09 4.94
1692 1740 2.296752 CACATCAATGGGCACAAAGACA 59.703 45.455 0.00 0.00 0.00 3.41
1695 1743 1.619827 ACCACATCAATGGGCACAAAG 59.380 47.619 0.00 0.00 44.81 2.77
1724 1772 5.105228 ACATGGAAACTGGAAATGGCTAATG 60.105 40.000 0.00 0.00 0.00 1.90
1748 1796 1.105457 AGCACAACTCTTTGCAGCAA 58.895 45.000 2.83 2.83 41.48 3.91
2044 2092 8.270111 GCTAAGAAAGAGAAACATAGCGATAAC 58.730 37.037 0.00 0.00 0.00 1.89
2143 2202 5.703978 TTTCAGAGATCGAAATTGCCAAA 57.296 34.783 0.00 0.00 0.00 3.28
2163 2222 7.227711 AGCGGTTTTAAAAAGGTTGCATAATTT 59.772 29.630 1.31 0.00 0.00 1.82
2250 2317 4.311613 TGGGATTATTGGACCATGGTAGA 58.688 43.478 19.80 7.10 0.00 2.59
2352 2419 6.127758 ACAGCGCAAATATGAAAAGATTACCA 60.128 34.615 11.47 0.00 0.00 3.25
2372 2439 5.067413 TGTTTCTACCTATAGGAAGACAGCG 59.933 44.000 26.01 4.33 38.94 5.18
2373 2440 6.097129 ACTGTTTCTACCTATAGGAAGACAGC 59.903 42.308 26.01 9.74 38.94 4.40
2785 2926 3.189285 CCCAATTTGGCAGAAATAAGCG 58.811 45.455 10.10 0.00 35.79 4.68
2799 2940 8.806429 AAAATGAACTTCTTCAAACCCAATTT 57.194 26.923 0.00 0.00 39.90 1.82
2843 2985 5.350365 CAGCGTGGAACTTAATAAGCACTAA 59.650 40.000 0.00 0.00 31.75 2.24
2860 3002 1.667236 TCTTAATGGCATCAGCGTGG 58.333 50.000 0.00 0.00 43.41 4.94
2890 3032 7.370905 ACTGATATTCTGATGATGGAGTCAA 57.629 36.000 0.00 0.00 40.97 3.18
2918 3061 8.837389 CCATGCTCCTAAACCTTACTTAATAAC 58.163 37.037 0.00 0.00 0.00 1.89
2965 3108 9.152595 GTTACTTAGGTTTCAGAAGGACATTAG 57.847 37.037 0.00 0.00 0.00 1.73
2967 3110 7.746703 AGTTACTTAGGTTTCAGAAGGACATT 58.253 34.615 0.00 0.00 0.00 2.71
3011 3155 3.137533 GCTCCTCAGTCCAATGCTATTC 58.862 50.000 0.00 0.00 0.00 1.75
3013 3157 2.406559 AGCTCCTCAGTCCAATGCTAT 58.593 47.619 0.00 0.00 0.00 2.97
3020 3235 3.703556 CTGAATTCTAGCTCCTCAGTCCA 59.296 47.826 7.05 0.00 30.98 4.02
3065 3280 4.881273 CCATGACACTTATTTTGGATCGGA 59.119 41.667 0.00 0.00 0.00 4.55
3095 3310 6.127225 TGTCATGGTTCCAGTTCAAATTTGAA 60.127 34.615 26.01 26.01 44.31 2.69
3096 3311 5.362143 TGTCATGGTTCCAGTTCAAATTTGA 59.638 36.000 16.91 16.91 34.92 2.69
3097 3312 5.463061 GTGTCATGGTTCCAGTTCAAATTTG 59.537 40.000 12.15 12.15 0.00 2.32
3098 3313 5.363580 AGTGTCATGGTTCCAGTTCAAATTT 59.636 36.000 0.00 0.00 0.00 1.82
3099 3314 4.895297 AGTGTCATGGTTCCAGTTCAAATT 59.105 37.500 0.00 0.00 0.00 1.82
3100 3315 4.473444 AGTGTCATGGTTCCAGTTCAAAT 58.527 39.130 0.00 0.00 0.00 2.32
3101 3316 3.897239 AGTGTCATGGTTCCAGTTCAAA 58.103 40.909 0.00 0.00 0.00 2.69
3102 3317 3.576078 AGTGTCATGGTTCCAGTTCAA 57.424 42.857 0.00 0.00 0.00 2.69
3103 3318 3.576078 AAGTGTCATGGTTCCAGTTCA 57.424 42.857 0.00 0.00 0.00 3.18
3104 3319 5.106157 CCAATAAGTGTCATGGTTCCAGTTC 60.106 44.000 0.00 0.00 0.00 3.01
3105 3320 4.766891 CCAATAAGTGTCATGGTTCCAGTT 59.233 41.667 0.00 0.00 0.00 3.16
3106 3321 4.042809 TCCAATAAGTGTCATGGTTCCAGT 59.957 41.667 0.00 0.00 34.50 4.00
3107 3322 4.588899 TCCAATAAGTGTCATGGTTCCAG 58.411 43.478 0.00 0.00 34.50 3.86
3108 3323 4.649267 TCCAATAAGTGTCATGGTTCCA 57.351 40.909 0.00 0.00 34.50 3.53
3109 3324 5.192927 TGATCCAATAAGTGTCATGGTTCC 58.807 41.667 0.00 0.00 32.92 3.62
3110 3325 6.115446 TCTGATCCAATAAGTGTCATGGTTC 58.885 40.000 0.00 0.00 34.50 3.62
3111 3326 6.065976 TCTGATCCAATAAGTGTCATGGTT 57.934 37.500 0.00 0.00 34.50 3.67
3112 3327 5.397221 CCTCTGATCCAATAAGTGTCATGGT 60.397 44.000 0.00 0.00 34.50 3.55
3113 3328 5.061853 CCTCTGATCCAATAAGTGTCATGG 58.938 45.833 0.00 0.00 0.00 3.66
3114 3329 5.061853 CCCTCTGATCCAATAAGTGTCATG 58.938 45.833 0.00 0.00 0.00 3.07
3115 3330 4.971282 TCCCTCTGATCCAATAAGTGTCAT 59.029 41.667 0.00 0.00 0.00 3.06
3116 3331 4.361783 TCCCTCTGATCCAATAAGTGTCA 58.638 43.478 0.00 0.00 0.00 3.58
3117 3332 4.407296 ACTCCCTCTGATCCAATAAGTGTC 59.593 45.833 0.00 0.00 0.00 3.67
3118 3333 4.366267 ACTCCCTCTGATCCAATAAGTGT 58.634 43.478 0.00 0.00 0.00 3.55
3119 3334 5.011533 CCTACTCCCTCTGATCCAATAAGTG 59.988 48.000 0.00 0.00 0.00 3.16
3120 3335 5.151454 CCTACTCCCTCTGATCCAATAAGT 58.849 45.833 0.00 0.00 0.00 2.24
3121 3336 4.020662 GCCTACTCCCTCTGATCCAATAAG 60.021 50.000 0.00 0.00 0.00 1.73
3122 3337 3.904339 GCCTACTCCCTCTGATCCAATAA 59.096 47.826 0.00 0.00 0.00 1.40
3123 3338 3.116746 TGCCTACTCCCTCTGATCCAATA 60.117 47.826 0.00 0.00 0.00 1.90
3124 3339 2.334023 GCCTACTCCCTCTGATCCAAT 58.666 52.381 0.00 0.00 0.00 3.16
3125 3340 1.008327 TGCCTACTCCCTCTGATCCAA 59.992 52.381 0.00 0.00 0.00 3.53
3126 3341 0.636647 TGCCTACTCCCTCTGATCCA 59.363 55.000 0.00 0.00 0.00 3.41
3127 3342 1.691434 CTTGCCTACTCCCTCTGATCC 59.309 57.143 0.00 0.00 0.00 3.36
3128 3343 2.393646 ACTTGCCTACTCCCTCTGATC 58.606 52.381 0.00 0.00 0.00 2.92
3129 3344 2.559381 ACTTGCCTACTCCCTCTGAT 57.441 50.000 0.00 0.00 0.00 2.90
3130 3345 3.689872 ATACTTGCCTACTCCCTCTGA 57.310 47.619 0.00 0.00 0.00 3.27
3131 3346 6.268847 AGAAATATACTTGCCTACTCCCTCTG 59.731 42.308 0.00 0.00 0.00 3.35
3132 3347 6.386284 AGAAATATACTTGCCTACTCCCTCT 58.614 40.000 0.00 0.00 0.00 3.69
3133 3348 6.673839 AGAAATATACTTGCCTACTCCCTC 57.326 41.667 0.00 0.00 0.00 4.30
3134 3349 6.847036 AGAAGAAATATACTTGCCTACTCCCT 59.153 38.462 0.00 0.00 0.00 4.20
3135 3350 7.015779 AGAGAAGAAATATACTTGCCTACTCCC 59.984 40.741 0.00 0.00 0.00 4.30
3136 3351 7.958088 AGAGAAGAAATATACTTGCCTACTCC 58.042 38.462 0.00 0.00 0.00 3.85
3169 3385 3.195396 GTGGCTTGCCTTTCCAATTATCA 59.805 43.478 13.18 0.00 0.00 2.15
3173 3397 1.345415 CAGTGGCTTGCCTTTCCAATT 59.655 47.619 13.18 0.00 0.00 2.32
3261 3568 7.340999 AGAGGTTTGTTGAAAAAGCTTTAGGTA 59.659 33.333 13.10 0.00 45.34 3.08
3262 3569 6.154534 AGAGGTTTGTTGAAAAAGCTTTAGGT 59.845 34.615 13.10 0.50 45.34 3.08
3263 3570 6.573434 AGAGGTTTGTTGAAAAAGCTTTAGG 58.427 36.000 13.10 0.00 45.34 2.69
3309 3618 6.220726 AGCCACTTCAACATTACACTTTTT 57.779 33.333 0.00 0.00 0.00 1.94
3313 3622 5.865085 TCTAAGCCACTTCAACATTACACT 58.135 37.500 0.00 0.00 0.00 3.55
3342 3652 7.308408 CCATAAAGTGCATGTCATATCCTTGAG 60.308 40.741 0.00 0.00 0.00 3.02
3404 3714 3.568430 ACTCGACACTATCAACACAGACA 59.432 43.478 0.00 0.00 0.00 3.41
3405 3715 3.914966 CACTCGACACTATCAACACAGAC 59.085 47.826 0.00 0.00 0.00 3.51
3460 3828 0.609662 GGGGGTTGAACGCTACAGTA 59.390 55.000 12.19 0.00 0.00 2.74
3480 3848 4.692155 GCATCCCCAGAAAAATTGAACAAG 59.308 41.667 0.00 0.00 0.00 3.16
3481 3849 4.347583 AGCATCCCCAGAAAAATTGAACAA 59.652 37.500 0.00 0.00 0.00 2.83
3566 3935 8.408601 GGATGCATGTCACAGTTAAGAAATATT 58.591 33.333 2.46 0.00 0.00 1.28
3567 3938 7.776969 AGGATGCATGTCACAGTTAAGAAATAT 59.223 33.333 2.46 0.00 0.00 1.28
3900 4277 3.181501 TGCTCAAGTATGCAATTAACCGC 60.182 43.478 0.00 0.00 36.15 5.68
3902 4279 7.260603 AGAAATGCTCAAGTATGCAATTAACC 58.739 34.615 0.00 0.00 42.74 2.85
3931 4308 3.649843 CCACCAGACACCCCTAGTATAA 58.350 50.000 0.00 0.00 0.00 0.98
3934 4311 0.616679 GCCACCAGACACCCCTAGTA 60.617 60.000 0.00 0.00 0.00 1.82
3939 4316 1.978617 CAATGCCACCAGACACCCC 60.979 63.158 0.00 0.00 0.00 4.95
3940 4317 1.228552 ACAATGCCACCAGACACCC 60.229 57.895 0.00 0.00 0.00 4.61
4059 4436 2.559705 CCTTACAGGGGGCAAAAAGGAT 60.560 50.000 0.00 0.00 36.42 3.24
4123 4503 3.000623 CACAATATACGACAGTGCAGCAG 59.999 47.826 0.00 0.00 0.00 4.24
4142 4522 4.904853 TCTGTATATGCCAATACTCCCACA 59.095 41.667 6.98 0.00 34.13 4.17
4144 4524 6.127054 GCTATCTGTATATGCCAATACTCCCA 60.127 42.308 6.98 0.00 34.13 4.37
4145 4525 6.127054 TGCTATCTGTATATGCCAATACTCCC 60.127 42.308 6.98 0.00 34.13 4.30
4163 4545 3.149196 CACCCAACTGTGTTTGCTATCT 58.851 45.455 0.00 0.00 0.00 1.98
4174 4556 0.185901 AGCACATTCCACCCAACTGT 59.814 50.000 0.00 0.00 0.00 3.55
4193 4575 1.078637 GACAGATCAGGCTGCTGCA 60.079 57.895 18.41 0.88 41.91 4.41
4219 4613 8.577296 TGTGAATAGGAATACACTAGTCATAGC 58.423 37.037 5.99 0.00 44.22 2.97
4225 4619 9.209048 TGGTATTGTGAATAGGAATACACTAGT 57.791 33.333 0.00 0.00 35.24 2.57
4243 4637 6.785466 ACCCTCCTTTTGTAAAATGGTATTGT 59.215 34.615 5.00 0.00 0.00 2.71
4247 4641 6.137559 ACAACCCTCCTTTTGTAAAATGGTA 58.862 36.000 5.00 0.00 34.12 3.25
4250 4644 6.821160 ACAAACAACCCTCCTTTTGTAAAATG 59.179 34.615 0.00 0.00 39.74 2.32
4251 4645 6.953101 ACAAACAACCCTCCTTTTGTAAAAT 58.047 32.000 0.00 0.00 39.74 1.82
4252 4646 6.361768 ACAAACAACCCTCCTTTTGTAAAA 57.638 33.333 0.00 0.00 39.74 1.52
4349 4861 9.594478 GGAAGTTTTGAGAAATTTAAAACCTGA 57.406 29.630 17.93 0.00 42.35 3.86
4374 4886 8.828644 CAAAGAATAGTTTCTGATCAGATGAGG 58.171 37.037 25.64 0.00 41.42 3.86
4407 4919 7.400339 CCAGAAGGATGCTATAGTTAGGGATAA 59.600 40.741 0.84 0.00 36.89 1.75
4424 4936 1.272704 GCAGGGGAAAACCAGAAGGAT 60.273 52.381 0.00 0.00 42.91 3.24
4438 4950 1.068753 CATACTCGCTCTGCAGGGG 59.931 63.158 17.16 13.70 33.28 4.79
4442 4954 1.102978 TAGCACATACTCGCTCTGCA 58.897 50.000 0.00 0.00 39.70 4.41
4451 4963 4.938226 GCCTCTTCAACTTTAGCACATACT 59.062 41.667 0.00 0.00 0.00 2.12
4484 4996 2.039084 GGAACCACACAAGGAGATGTCT 59.961 50.000 0.00 0.00 0.00 3.41
4496 5009 1.555477 CGTTTTTGCAGGAACCACAC 58.445 50.000 8.21 0.00 0.00 3.82
4529 5042 0.584396 TTGTTGCGTTTCAGCTACCG 59.416 50.000 0.00 0.00 41.04 4.02
4536 5049 6.293190 CCTTCTTGTAGTATTGTTGCGTTTCA 60.293 38.462 0.00 0.00 0.00 2.69
4541 5054 3.435327 TGCCTTCTTGTAGTATTGTTGCG 59.565 43.478 0.00 0.00 0.00 4.85
4579 5092 0.712775 CAGCGAGAAACAGAGCTTCG 59.287 55.000 0.00 0.00 37.94 3.79
4603 5116 6.852420 TGTAAGAACCACTGTCTAGCTATT 57.148 37.500 0.00 0.00 0.00 1.73
4853 5370 9.836864 AGGAAAAACAAATTTTAGCAGAGAAAT 57.163 25.926 0.00 0.00 41.27 2.17
4930 5448 9.787435 AACTATACTTTTATCACACAAACAGGA 57.213 29.630 0.00 0.00 0.00 3.86
4978 5496 3.947196 TGGCAAGATGATATGTGTTCCAC 59.053 43.478 0.00 0.00 34.56 4.02
4979 5497 4.201657 CTGGCAAGATGATATGTGTTCCA 58.798 43.478 0.00 0.00 0.00 3.53
4980 5498 4.036027 CACTGGCAAGATGATATGTGTTCC 59.964 45.833 0.00 0.00 0.00 3.62
4981 5499 4.637534 ACACTGGCAAGATGATATGTGTTC 59.362 41.667 0.00 0.00 34.32 3.18
5004 5538 1.278985 ACATTTGATGCGAGGACCAGA 59.721 47.619 0.00 0.00 0.00 3.86
5077 5611 2.351706 TCCAAAAACAGCCCGTAGTT 57.648 45.000 0.00 0.00 0.00 2.24
5145 5686 2.487625 CGGTTGGGAGGAAAAGGTTACA 60.488 50.000 0.00 0.00 0.00 2.41
5150 5691 0.953960 CGACGGTTGGGAGGAAAAGG 60.954 60.000 0.00 0.00 0.00 3.11
5155 5696 3.014085 GCATCGACGGTTGGGAGGA 62.014 63.158 0.00 0.00 0.00 3.71
5156 5697 2.511600 GCATCGACGGTTGGGAGG 60.512 66.667 0.00 0.00 0.00 4.30
5159 5700 3.499737 GCAGCATCGACGGTTGGG 61.500 66.667 0.00 0.00 0.00 4.12
5166 5707 1.002366 ATCGTTGAAGCAGCATCGAC 58.998 50.000 7.83 7.83 41.17 4.20
5168 5709 2.532531 AAATCGTTGAAGCAGCATCG 57.467 45.000 0.00 3.72 33.53 3.84
5196 6071 1.949847 ATCACTCGCCCCTTGAGACG 61.950 60.000 0.00 0.00 36.93 4.18
5215 6090 8.943594 ATACCAGGTTTTAAAGACCACAATAA 57.056 30.769 16.72 3.76 39.71 1.40
5218 6093 6.461788 GCAATACCAGGTTTTAAAGACCACAA 60.462 38.462 16.72 5.19 39.71 3.33
5219 6094 5.010213 GCAATACCAGGTTTTAAAGACCACA 59.990 40.000 16.72 4.71 39.71 4.17
5220 6095 5.010213 TGCAATACCAGGTTTTAAAGACCAC 59.990 40.000 16.72 1.89 39.71 4.16
5222 6097 5.715434 TGCAATACCAGGTTTTAAAGACC 57.285 39.130 0.00 10.03 37.44 3.85
5223 6098 6.156519 CCTTGCAATACCAGGTTTTAAAGAC 58.843 40.000 0.00 0.00 0.00 3.01
5225 6100 5.478407 CCCTTGCAATACCAGGTTTTAAAG 58.522 41.667 0.00 4.14 0.00 1.85
5226 6101 4.262678 GCCCTTGCAATACCAGGTTTTAAA 60.263 41.667 0.00 0.00 37.47 1.52
5260 6152 6.657541 TGAACCAATAGTTAAAGGAAAGCGAT 59.342 34.615 0.00 0.00 39.40 4.58
5270 6162 9.255304 GAAAAATGCACTGAACCAATAGTTAAA 57.745 29.630 0.00 0.00 39.40 1.52
5273 6165 6.815089 TGAAAAATGCACTGAACCAATAGTT 58.185 32.000 0.00 0.00 43.07 2.24
5310 6202 0.320073 TTCGTCCGATTGAAACGCCT 60.320 50.000 3.67 0.00 36.40 5.52
5311 6203 0.094730 CTTCGTCCGATTGAAACGCC 59.905 55.000 3.67 0.00 36.40 5.68
5326 6218 6.952935 AAAGCATACTAGTCTTTGTCTTCG 57.047 37.500 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.