Multiple sequence alignment - TraesCS5D01G401900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G401900 chr5D 100.000 4795 0 0 1 4795 467605145 467600351 0.000000e+00 8855.0
1 TraesCS5D01G401900 chr5D 86.577 1043 131 9 1906 2942 467689876 467688837 0.000000e+00 1142.0
2 TraesCS5D01G401900 chr5D 84.060 596 57 19 966 1554 467699481 467698917 1.520000e-149 540.0
3 TraesCS5D01G401900 chr5D 93.617 188 10 2 1631 1818 467690060 467689875 3.650000e-71 279.0
4 TraesCS5D01G401900 chr5A 95.802 2525 81 13 1825 4337 588377959 588375448 0.000000e+00 4052.0
5 TraesCS5D01G401900 chr5A 90.093 1504 74 31 359 1835 588379473 588378018 0.000000e+00 1882.0
6 TraesCS5D01G401900 chr5A 83.333 558 48 26 966 1510 588414975 588414450 1.560000e-129 473.0
7 TraesCS5D01G401900 chr5A 85.449 323 43 4 2469 2787 588408853 588408531 2.770000e-87 333.0
8 TraesCS5D01G401900 chr5A 92.073 164 13 0 4632 4795 588374603 588374440 1.040000e-56 231.0
9 TraesCS5D01G401900 chr5A 83.032 277 23 9 1550 1818 588411511 588411251 3.730000e-56 230.0
10 TraesCS5D01G401900 chr5A 86.170 188 25 1 6 193 588380922 588380736 8.140000e-48 202.0
11 TraesCS5D01G401900 chr5B 96.247 2398 77 9 1858 4253 574677453 574675067 0.000000e+00 3917.0
12 TraesCS5D01G401900 chr5B 93.286 1534 42 27 359 1861 574679001 574677498 0.000000e+00 2206.0
13 TraesCS5D01G401900 chr5B 85.203 1061 128 14 1906 2942 574719770 574718715 0.000000e+00 1062.0
14 TraesCS5D01G401900 chr5B 83.126 563 50 27 966 1511 574720670 574720136 5.620000e-129 472.0
15 TraesCS5D01G401900 chr5B 91.573 178 13 2 1641 1818 574719944 574719769 1.330000e-60 244.0
16 TraesCS5D01G401900 chr6D 82.961 986 142 17 2827 3803 454232264 454233232 0.000000e+00 867.0
17 TraesCS5D01G401900 chr6D 94.253 174 8 2 193 365 97856420 97856592 1.020000e-66 265.0
18 TraesCS5D01G401900 chr6B 79.814 1184 170 36 2830 3968 690559882 690558723 0.000000e+00 798.0
19 TraesCS5D01G401900 chr6A 79.741 1160 164 37 2845 3970 600405167 600406289 0.000000e+00 774.0
20 TraesCS5D01G401900 chr7A 94.737 171 8 1 191 361 670426372 670426541 1.020000e-66 265.0
21 TraesCS5D01G401900 chr4D 94.253 174 9 1 191 364 116470656 116470484 1.020000e-66 265.0
22 TraesCS5D01G401900 chr3D 94.737 171 8 1 191 361 388692399 388692568 1.020000e-66 265.0
23 TraesCS5D01G401900 chr2D 94.737 171 8 1 191 361 615211535 615211704 1.020000e-66 265.0
24 TraesCS5D01G401900 chr2D 90.909 55 4 1 85 139 24529129 24529076 6.660000e-09 73.1
25 TraesCS5D01G401900 chr1D 94.253 174 9 1 188 361 238940384 238940212 1.020000e-66 265.0
26 TraesCS5D01G401900 chr1D 94.253 174 9 1 191 364 294613126 294612954 1.020000e-66 265.0
27 TraesCS5D01G401900 chr1B 94.253 174 8 2 188 361 266806100 266805929 1.020000e-66 265.0
28 TraesCS5D01G401900 chr1B 78.049 164 32 4 1 163 645584772 645584932 3.050000e-17 100.0
29 TraesCS5D01G401900 chr7D 92.818 181 12 1 185 365 500255334 500255155 1.320000e-65 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G401900 chr5D 467600351 467605145 4794 True 8855.000000 8855 100.0000 1 4795 1 chr5D.!!$R1 4794
1 TraesCS5D01G401900 chr5D 467688837 467690060 1223 True 710.500000 1142 90.0970 1631 2942 2 chr5D.!!$R3 1311
2 TraesCS5D01G401900 chr5D 467698917 467699481 564 True 540.000000 540 84.0600 966 1554 1 chr5D.!!$R2 588
3 TraesCS5D01G401900 chr5A 588374440 588380922 6482 True 1591.750000 4052 91.0345 6 4795 4 chr5A.!!$R1 4789
4 TraesCS5D01G401900 chr5A 588408531 588414975 6444 True 345.333333 473 83.9380 966 2787 3 chr5A.!!$R2 1821
5 TraesCS5D01G401900 chr5B 574675067 574679001 3934 True 3061.500000 3917 94.7665 359 4253 2 chr5B.!!$R1 3894
6 TraesCS5D01G401900 chr5B 574718715 574720670 1955 True 592.666667 1062 86.6340 966 2942 3 chr5B.!!$R2 1976
7 TraesCS5D01G401900 chr6D 454232264 454233232 968 False 867.000000 867 82.9610 2827 3803 1 chr6D.!!$F2 976
8 TraesCS5D01G401900 chr6B 690558723 690559882 1159 True 798.000000 798 79.8140 2830 3968 1 chr6B.!!$R1 1138
9 TraesCS5D01G401900 chr6A 600405167 600406289 1122 False 774.000000 774 79.7410 2845 3970 1 chr6A.!!$F1 1125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 2137 0.609681 GAGAGTGTCGGTGGAGGAGT 60.610 60.0 0.0 0.0 0.0 3.85 F
1359 2523 0.796312 TTCATTTCGAGCTTGTCCGC 59.204 50.0 0.0 0.0 0.0 5.54 F
1959 6273 1.486211 ATCCGGTCACCTCTACTTGG 58.514 55.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2875 9060 0.973632 TCCACGACACTGCCAATAGT 59.026 50.0 0.00 0.00 0.00 2.12 R
3019 9204 2.093973 ACAGCTTCCTGGACGAGTAATG 60.094 50.0 4.10 1.13 43.53 1.90 R
3886 10114 0.739462 CCCGCGTCTTCTATGCAACA 60.739 55.0 4.92 0.00 40.39 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.614535 GCAATGAGCACTTTCGAACAAGAT 60.615 41.667 0.00 0.00 44.79 2.40
41 42 8.971321 ACTTTCGAACAAGATCAATTTTGAATG 58.029 29.630 0.00 5.32 41.13 2.67
77 78 8.822855 ACCTTTTTAAATTTTTACCAAGCTTCG 58.177 29.630 0.00 0.00 0.00 3.79
162 163 4.889832 TTCGTTTGCTTTTACGGGTTTA 57.110 36.364 0.00 0.00 38.26 2.01
166 167 4.496175 CGTTTGCTTTTACGGGTTTACAGT 60.496 41.667 0.00 0.00 34.30 3.55
168 169 5.579564 TTGCTTTTACGGGTTTACAGTTT 57.420 34.783 0.00 0.00 0.00 2.66
171 172 5.239087 TGCTTTTACGGGTTTACAGTTTAGG 59.761 40.000 0.00 0.00 0.00 2.69
180 181 4.703575 GGTTTACAGTTTAGGGCTTAAGGG 59.296 45.833 4.29 0.00 0.00 3.95
184 185 5.587760 ACAGTTTAGGGCTTAAGGGTTAA 57.412 39.130 4.29 0.00 0.00 2.01
193 194 7.333779 AGGGCTTAAGGGTTAAGTTTTAGTA 57.666 36.000 4.29 0.00 43.52 1.82
194 195 7.170965 AGGGCTTAAGGGTTAAGTTTTAGTAC 58.829 38.462 4.29 0.00 43.52 2.73
196 197 7.335422 GGGCTTAAGGGTTAAGTTTTAGTACTC 59.665 40.741 0.00 0.00 43.52 2.59
197 198 7.335422 GGCTTAAGGGTTAAGTTTTAGTACTCC 59.665 40.741 0.00 0.00 43.52 3.85
198 199 7.335422 GCTTAAGGGTTAAGTTTTAGTACTCCC 59.665 40.741 0.00 0.00 43.52 4.30
199 200 8.510358 TTAAGGGTTAAGTTTTAGTACTCCCT 57.490 34.615 0.00 2.55 40.14 4.20
200 201 6.617782 AGGGTTAAGTTTTAGTACTCCCTC 57.382 41.667 0.00 0.00 36.00 4.30
202 203 5.414360 GGTTAAGTTTTAGTACTCCCTCCG 58.586 45.833 0.00 0.00 0.00 4.63
203 204 5.047021 GGTTAAGTTTTAGTACTCCCTCCGT 60.047 44.000 0.00 0.00 0.00 4.69
204 205 6.459066 GTTAAGTTTTAGTACTCCCTCCGTT 58.541 40.000 0.00 0.00 0.00 4.44
206 207 3.513119 AGTTTTAGTACTCCCTCCGTTCC 59.487 47.826 0.00 0.00 0.00 3.62
207 208 3.463048 TTTAGTACTCCCTCCGTTCCT 57.537 47.619 0.00 0.00 0.00 3.36
210 211 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
212 213 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
213 214 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
215 216 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
216 217 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
218 219 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
220 221 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
221 222 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
222 223 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
223 224 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
224 225 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
254 255 9.640963 ATTTCAATAAGTGACTATATACGGAGC 57.359 33.333 0.00 0.00 35.39 4.70
255 256 7.754851 TCAATAAGTGACTATATACGGAGCA 57.245 36.000 0.00 0.00 0.00 4.26
256 257 8.173542 TCAATAAGTGACTATATACGGAGCAA 57.826 34.615 0.00 0.00 0.00 3.91
257 258 8.635328 TCAATAAGTGACTATATACGGAGCAAA 58.365 33.333 0.00 0.00 0.00 3.68
258 259 9.256477 CAATAAGTGACTATATACGGAGCAAAA 57.744 33.333 0.00 0.00 0.00 2.44
259 260 9.998106 AATAAGTGACTATATACGGAGCAAAAT 57.002 29.630 0.00 0.00 0.00 1.82
260 261 7.715265 AAGTGACTATATACGGAGCAAAATG 57.285 36.000 0.00 0.00 0.00 2.32
261 262 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
262 263 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
263 264 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
264 265 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
265 266 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
266 267 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
267 268 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
268 269 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
269 270 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
270 271 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
271 272 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
272 273 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
273 274 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
275 276 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
318 319 8.638873 ACATCCGTATGTGATAGTCTATTTGAA 58.361 33.333 0.00 0.00 44.79 2.69
319 320 9.476202 CATCCGTATGTGATAGTCTATTTGAAA 57.524 33.333 0.00 0.00 0.00 2.69
351 352 7.625828 AAAGACAATTATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
353 354 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
354 355 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
356 357 6.069847 ACAATTATTTAGGAACGGAGGGAGAA 60.070 38.462 0.00 0.00 0.00 2.87
461 1578 3.119029 ACATGTGCTATGTTTTGGCATCC 60.119 43.478 0.00 0.00 38.27 3.51
514 1636 2.208431 GCAGAATGATCTCCGGAACAG 58.792 52.381 5.23 0.00 39.69 3.16
683 1812 1.680989 TCACATCCGCGGGAGAGAA 60.681 57.895 27.83 4.46 34.05 2.87
788 1932 4.149970 GCGTCTCGTCTCGTCGCT 62.150 66.667 15.53 0.00 38.44 4.93
959 2107 4.404098 GGTGGGTGGGTAGGTGCG 62.404 72.222 0.00 0.00 0.00 5.34
986 2137 0.609681 GAGAGTGTCGGTGGAGGAGT 60.610 60.000 0.00 0.00 0.00 3.85
1148 2311 1.152839 CCGGTCCTCCTCTCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
1227 2390 1.361632 CGGAGCATCGCTGAGATCA 59.638 57.895 0.00 0.00 39.88 2.92
1359 2523 0.796312 TTCATTTCGAGCTTGTCCGC 59.204 50.000 0.00 0.00 0.00 5.54
1430 2605 4.052518 AAGCTTCCCCGCTGCCAT 62.053 61.111 0.00 0.00 40.79 4.40
1509 2755 2.838202 AGGAGGGAAGCGAATCAGTAAA 59.162 45.455 0.00 0.00 0.00 2.01
1585 5760 5.059404 GCAAACTGCAATTATGGTGTACT 57.941 39.130 0.00 0.00 44.26 2.73
1586 5761 5.095490 GCAAACTGCAATTATGGTGTACTC 58.905 41.667 0.00 0.00 44.26 2.59
1587 5762 5.640732 CAAACTGCAATTATGGTGTACTCC 58.359 41.667 7.03 7.03 0.00 3.85
1626 5806 5.724328 TCTAGCATGTCGATTGAACTTCTT 58.276 37.500 0.00 0.00 0.00 2.52
1805 6001 3.657634 TCACATCAACAGCTCTGTCTTC 58.342 45.455 2.68 0.00 44.13 2.87
1879 6192 4.962155 AGTAGCATGGCTAATAGTTGGTC 58.038 43.478 0.00 0.00 43.07 4.02
1917 6230 6.374333 ACAAACAATATAGTAGCCACCAAGTG 59.626 38.462 0.00 0.00 0.00 3.16
1943 6256 7.373493 CAATTACCAGCAGATTTTGGATATCC 58.627 38.462 15.39 15.39 37.89 2.59
1959 6273 1.486211 ATCCGGTCACCTCTACTTGG 58.514 55.000 0.00 0.00 0.00 3.61
2013 6330 2.481795 GCAGGCAACAGTCACAATGTTT 60.482 45.455 0.00 0.00 38.80 2.83
2467 8618 2.933056 GCTCTCAGTAAGTTGCCCACTC 60.933 54.545 0.00 0.00 32.94 3.51
2574 8726 9.825972 CATCTTAGTACCACTTTTGTATGTTTG 57.174 33.333 0.00 0.00 0.00 2.93
2920 9105 3.004752 ACCTGCACATACTCCCAATTC 57.995 47.619 0.00 0.00 0.00 2.17
3019 9204 1.489881 CTTGCGGCTGCCAAAACAAC 61.490 55.000 20.29 0.00 41.78 3.32
3059 9244 9.974750 GAAGCTGTGTAAAGTGAGTTAATAATC 57.025 33.333 0.00 0.00 0.00 1.75
3434 9636 6.872020 GCATAAGTAAGTCACCTTGTGAACTA 59.128 38.462 0.00 0.00 44.49 2.24
3800 10022 6.018262 TGCTGGCTTATTACGTATGATGAAAC 60.018 38.462 0.00 0.00 0.00 2.78
3829 10054 1.932511 GAGATTCAGCGAGCTTCAAGG 59.067 52.381 0.00 0.00 0.00 3.61
3886 10114 6.268387 AGGTCATTTGTTCATTCAATTCCACT 59.732 34.615 0.00 0.00 0.00 4.00
3901 10129 2.959516 TCCACTGTTGCATAGAAGACG 58.040 47.619 5.58 0.00 0.00 4.18
3929 10161 2.621338 CGTGCTGAGGAAAGCTGATAA 58.379 47.619 0.00 0.00 43.90 1.75
3968 10203 7.708752 TGTAAGTTAAAAAGGGCTGAAAATGTG 59.291 33.333 0.00 0.00 0.00 3.21
4117 10352 5.647658 TGCCTTTCTTGTAGTGATTGTATGG 59.352 40.000 0.00 0.00 0.00 2.74
4176 10412 5.423015 GAGAGATGCTGTTGGTTGAGATAA 58.577 41.667 0.00 0.00 0.00 1.75
4177 10413 5.181748 AGAGATGCTGTTGGTTGAGATAAC 58.818 41.667 0.00 0.00 0.00 1.89
4178 10414 4.910195 AGATGCTGTTGGTTGAGATAACA 58.090 39.130 0.00 0.00 33.67 2.41
4196 10432 9.508567 GAGATAACAATCTAGCATTGTTTTTCC 57.491 33.333 25.00 16.59 46.45 3.13
4197 10433 9.247861 AGATAACAATCTAGCATTGTTTTTCCT 57.752 29.630 25.00 17.71 46.45 3.36
4198 10434 9.294030 GATAACAATCTAGCATTGTTTTTCCTG 57.706 33.333 25.00 2.81 46.45 3.86
4199 10435 6.029346 ACAATCTAGCATTGTTTTTCCTGG 57.971 37.500 12.15 0.00 38.97 4.45
4203 10439 0.321564 GCATTGTTTTTCCTGGCCCC 60.322 55.000 0.00 0.00 0.00 5.80
4253 10489 6.991485 ATAACACAAATCAAAAGAAGCACG 57.009 33.333 0.00 0.00 0.00 5.34
4254 10490 3.115554 ACACAAATCAAAAGAAGCACGC 58.884 40.909 0.00 0.00 0.00 5.34
4259 10495 0.581529 TCAAAAGAAGCACGCGACAG 59.418 50.000 15.93 2.87 0.00 3.51
4260 10496 0.304705 CAAAAGAAGCACGCGACAGT 59.695 50.000 15.93 0.00 0.00 3.55
4282 10518 1.136695 CTCAGGCTAGGCTGAACAGAG 59.863 57.143 38.76 27.08 0.00 3.35
4287 10523 1.734047 GCTAGGCTGAACAGAGACGTG 60.734 57.143 5.97 0.00 0.00 4.49
4298 10534 2.164624 ACAGAGACGTGCCTAAGATCAC 59.835 50.000 0.00 0.00 0.00 3.06
4304 10540 3.740115 ACGTGCCTAAGATCACAAAACT 58.260 40.909 0.00 0.00 33.03 2.66
4306 10542 4.689345 ACGTGCCTAAGATCACAAAACTAC 59.311 41.667 0.00 0.00 33.03 2.73
4307 10543 4.929808 CGTGCCTAAGATCACAAAACTACT 59.070 41.667 0.00 0.00 33.03 2.57
4308 10544 6.097356 CGTGCCTAAGATCACAAAACTACTA 58.903 40.000 0.00 0.00 33.03 1.82
4309 10545 6.034683 CGTGCCTAAGATCACAAAACTACTAC 59.965 42.308 0.00 0.00 33.03 2.73
4310 10546 7.097834 GTGCCTAAGATCACAAAACTACTACT 58.902 38.462 0.00 0.00 33.63 2.57
4311 10547 7.603024 GTGCCTAAGATCACAAAACTACTACTT 59.397 37.037 0.00 0.00 33.63 2.24
4312 10548 8.809066 TGCCTAAGATCACAAAACTACTACTTA 58.191 33.333 0.00 0.00 0.00 2.24
4313 10549 9.085250 GCCTAAGATCACAAAACTACTACTTAC 57.915 37.037 0.00 0.00 0.00 2.34
4348 10584 5.593679 AAAAGGCATGATCCATGAAAGAG 57.406 39.130 10.77 0.00 43.81 2.85
4349 10585 3.947612 AGGCATGATCCATGAAAGAGT 57.052 42.857 10.77 0.00 43.81 3.24
4350 10586 4.246712 AGGCATGATCCATGAAAGAGTT 57.753 40.909 10.77 0.00 43.81 3.01
4351 10587 4.205587 AGGCATGATCCATGAAAGAGTTC 58.794 43.478 10.77 0.00 43.81 3.01
4352 10588 4.079901 AGGCATGATCCATGAAAGAGTTCT 60.080 41.667 10.77 0.00 43.81 3.01
4353 10589 4.275443 GGCATGATCCATGAAAGAGTTCTC 59.725 45.833 10.77 0.00 43.81 2.87
4354 10590 5.124645 GCATGATCCATGAAAGAGTTCTCT 58.875 41.667 10.77 0.00 43.81 3.10
4355 10591 5.007823 GCATGATCCATGAAAGAGTTCTCTG 59.992 44.000 10.77 0.00 43.81 3.35
4356 10592 5.752036 TGATCCATGAAAGAGTTCTCTGT 57.248 39.130 2.96 0.00 34.60 3.41
4357 10593 5.728471 TGATCCATGAAAGAGTTCTCTGTC 58.272 41.667 11.80 11.80 34.60 3.51
4358 10594 4.179926 TCCATGAAAGAGTTCTCTGTCG 57.820 45.455 13.31 2.92 34.60 4.35
4359 10595 3.056536 TCCATGAAAGAGTTCTCTGTCGG 60.057 47.826 13.31 10.14 34.60 4.79
4360 10596 2.440539 TGAAAGAGTTCTCTGTCGGC 57.559 50.000 13.31 0.00 34.60 5.54
4361 10597 1.964223 TGAAAGAGTTCTCTGTCGGCT 59.036 47.619 13.31 0.00 34.60 5.52
4362 10598 2.029828 TGAAAGAGTTCTCTGTCGGCTC 60.030 50.000 13.31 0.00 34.60 4.70
4363 10599 1.917872 AAGAGTTCTCTGTCGGCTCT 58.082 50.000 2.96 0.00 38.06 4.09
4364 10600 1.917872 AGAGTTCTCTGTCGGCTCTT 58.082 50.000 1.23 0.00 33.25 2.85
4365 10601 2.243810 AGAGTTCTCTGTCGGCTCTTT 58.756 47.619 1.23 0.00 33.25 2.52
4366 10602 2.630580 AGAGTTCTCTGTCGGCTCTTTT 59.369 45.455 1.23 0.00 33.25 2.27
4367 10603 2.990514 GAGTTCTCTGTCGGCTCTTTTC 59.009 50.000 0.00 0.00 0.00 2.29
4368 10604 2.365617 AGTTCTCTGTCGGCTCTTTTCA 59.634 45.455 0.00 0.00 0.00 2.69
4369 10605 2.732412 TCTCTGTCGGCTCTTTTCAG 57.268 50.000 0.00 0.00 0.00 3.02
4370 10606 1.273606 TCTCTGTCGGCTCTTTTCAGG 59.726 52.381 0.00 0.00 0.00 3.86
4371 10607 1.273606 CTCTGTCGGCTCTTTTCAGGA 59.726 52.381 0.00 0.00 0.00 3.86
4372 10608 1.902508 TCTGTCGGCTCTTTTCAGGAT 59.097 47.619 0.00 0.00 0.00 3.24
4373 10609 2.303022 TCTGTCGGCTCTTTTCAGGATT 59.697 45.455 0.00 0.00 0.00 3.01
4374 10610 2.675348 CTGTCGGCTCTTTTCAGGATTC 59.325 50.000 0.00 0.00 0.00 2.52
4375 10611 2.303022 TGTCGGCTCTTTTCAGGATTCT 59.697 45.455 0.00 0.00 0.00 2.40
4376 10612 3.244561 TGTCGGCTCTTTTCAGGATTCTT 60.245 43.478 0.00 0.00 0.00 2.52
4377 10613 4.020573 TGTCGGCTCTTTTCAGGATTCTTA 60.021 41.667 0.00 0.00 0.00 2.10
4378 10614 4.330347 GTCGGCTCTTTTCAGGATTCTTAC 59.670 45.833 0.00 0.00 0.00 2.34
4379 10615 4.223032 TCGGCTCTTTTCAGGATTCTTACT 59.777 41.667 0.00 0.00 0.00 2.24
4380 10616 5.421056 TCGGCTCTTTTCAGGATTCTTACTA 59.579 40.000 0.00 0.00 0.00 1.82
4381 10617 5.751028 CGGCTCTTTTCAGGATTCTTACTAG 59.249 44.000 0.00 0.00 0.00 2.57
4382 10618 6.052360 GGCTCTTTTCAGGATTCTTACTAGG 58.948 44.000 0.00 0.00 0.00 3.02
4383 10619 6.052360 GCTCTTTTCAGGATTCTTACTAGGG 58.948 44.000 0.00 0.00 0.00 3.53
4384 10620 5.990668 TCTTTTCAGGATTCTTACTAGGGC 58.009 41.667 0.00 0.00 0.00 5.19
4385 10621 5.487488 TCTTTTCAGGATTCTTACTAGGGCA 59.513 40.000 0.00 0.00 0.00 5.36
4386 10622 5.975988 TTTCAGGATTCTTACTAGGGCAT 57.024 39.130 0.00 0.00 0.00 4.40
4387 10623 4.963318 TCAGGATTCTTACTAGGGCATG 57.037 45.455 0.00 0.00 0.00 4.06
4388 10624 3.071602 TCAGGATTCTTACTAGGGCATGC 59.928 47.826 9.90 9.90 0.00 4.06
4389 10625 3.072184 CAGGATTCTTACTAGGGCATGCT 59.928 47.826 18.92 0.24 0.00 3.79
4390 10626 4.284490 CAGGATTCTTACTAGGGCATGCTA 59.716 45.833 18.92 1.67 0.00 3.49
4391 10627 4.284746 AGGATTCTTACTAGGGCATGCTAC 59.715 45.833 18.92 11.20 0.00 3.58
4392 10628 4.284746 GGATTCTTACTAGGGCATGCTACT 59.715 45.833 18.92 17.90 0.00 2.57
4393 10629 5.480772 GGATTCTTACTAGGGCATGCTACTA 59.519 44.000 18.92 18.06 0.00 1.82
4394 10630 5.786264 TTCTTACTAGGGCATGCTACTAC 57.214 43.478 18.92 0.00 0.00 2.73
4395 10631 4.800023 TCTTACTAGGGCATGCTACTACA 58.200 43.478 18.92 6.55 0.00 2.74
4396 10632 5.394738 TCTTACTAGGGCATGCTACTACAT 58.605 41.667 18.92 11.18 0.00 2.29
4397 10633 5.477291 TCTTACTAGGGCATGCTACTACATC 59.523 44.000 18.92 0.00 0.00 3.06
4398 10634 2.558795 ACTAGGGCATGCTACTACATCG 59.441 50.000 18.92 10.57 0.00 3.84
4399 10635 1.414158 AGGGCATGCTACTACATCGT 58.586 50.000 18.92 0.00 0.00 3.73
4400 10636 1.762957 AGGGCATGCTACTACATCGTT 59.237 47.619 18.92 0.00 0.00 3.85
4401 10637 2.170607 AGGGCATGCTACTACATCGTTT 59.829 45.455 18.92 0.00 0.00 3.60
4402 10638 2.544267 GGGCATGCTACTACATCGTTTC 59.456 50.000 18.92 0.00 0.00 2.78
4403 10639 3.458189 GGCATGCTACTACATCGTTTCT 58.542 45.455 18.92 0.00 0.00 2.52
4404 10640 3.491267 GGCATGCTACTACATCGTTTCTC 59.509 47.826 18.92 0.00 0.00 2.87
4405 10641 4.112634 GCATGCTACTACATCGTTTCTCA 58.887 43.478 11.37 0.00 0.00 3.27
4406 10642 4.747108 GCATGCTACTACATCGTTTCTCAT 59.253 41.667 11.37 0.00 0.00 2.90
4407 10643 5.107683 GCATGCTACTACATCGTTTCTCATC 60.108 44.000 11.37 0.00 0.00 2.92
4408 10644 4.933330 TGCTACTACATCGTTTCTCATCC 58.067 43.478 0.00 0.00 0.00 3.51
4409 10645 4.202121 TGCTACTACATCGTTTCTCATCCC 60.202 45.833 0.00 0.00 0.00 3.85
4410 10646 4.038162 GCTACTACATCGTTTCTCATCCCT 59.962 45.833 0.00 0.00 0.00 4.20
4411 10647 5.452077 GCTACTACATCGTTTCTCATCCCTT 60.452 44.000 0.00 0.00 0.00 3.95
4412 10648 4.759782 ACTACATCGTTTCTCATCCCTTG 58.240 43.478 0.00 0.00 0.00 3.61
4413 10649 2.359900 ACATCGTTTCTCATCCCTTGC 58.640 47.619 0.00 0.00 0.00 4.01
4414 10650 2.290260 ACATCGTTTCTCATCCCTTGCA 60.290 45.455 0.00 0.00 0.00 4.08
4415 10651 2.787473 TCGTTTCTCATCCCTTGCAT 57.213 45.000 0.00 0.00 0.00 3.96
4416 10652 3.904800 TCGTTTCTCATCCCTTGCATA 57.095 42.857 0.00 0.00 0.00 3.14
4417 10653 4.214986 TCGTTTCTCATCCCTTGCATAA 57.785 40.909 0.00 0.00 0.00 1.90
4418 10654 4.191544 TCGTTTCTCATCCCTTGCATAAG 58.808 43.478 0.00 0.00 0.00 1.73
4419 10655 4.081142 TCGTTTCTCATCCCTTGCATAAGA 60.081 41.667 0.00 0.00 35.92 2.10
4420 10656 4.818546 CGTTTCTCATCCCTTGCATAAGAT 59.181 41.667 0.00 0.00 35.92 2.40
4421 10657 5.049818 CGTTTCTCATCCCTTGCATAAGATC 60.050 44.000 0.00 0.00 35.92 2.75
4422 10658 5.635278 TTCTCATCCCTTGCATAAGATCA 57.365 39.130 0.00 0.00 35.92 2.92
4423 10659 5.837770 TCTCATCCCTTGCATAAGATCAT 57.162 39.130 0.00 0.00 35.92 2.45
4424 10660 6.940430 TCTCATCCCTTGCATAAGATCATA 57.060 37.500 0.00 0.00 35.92 2.15
4425 10661 7.506361 TCTCATCCCTTGCATAAGATCATAT 57.494 36.000 0.00 0.00 35.92 1.78
4426 10662 7.563020 TCTCATCCCTTGCATAAGATCATATC 58.437 38.462 0.00 0.00 35.92 1.63
4427 10663 6.343703 TCATCCCTTGCATAAGATCATATCG 58.656 40.000 0.00 0.00 35.92 2.92
4428 10664 5.089970 TCCCTTGCATAAGATCATATCGG 57.910 43.478 0.00 0.00 35.92 4.18
4429 10665 4.532126 TCCCTTGCATAAGATCATATCGGT 59.468 41.667 0.00 0.00 35.92 4.69
4430 10666 5.719563 TCCCTTGCATAAGATCATATCGGTA 59.280 40.000 0.00 0.00 35.92 4.02
4431 10667 6.384015 TCCCTTGCATAAGATCATATCGGTAT 59.616 38.462 0.00 0.00 35.92 2.73
4432 10668 6.703607 CCCTTGCATAAGATCATATCGGTATC 59.296 42.308 0.00 0.00 35.92 2.24
4433 10669 6.703607 CCTTGCATAAGATCATATCGGTATCC 59.296 42.308 0.00 0.00 35.92 2.59
4434 10670 6.790232 TGCATAAGATCATATCGGTATCCA 57.210 37.500 0.00 0.00 0.00 3.41
4435 10671 7.365497 TGCATAAGATCATATCGGTATCCAT 57.635 36.000 0.00 0.00 0.00 3.41
4436 10672 7.436933 TGCATAAGATCATATCGGTATCCATC 58.563 38.462 0.00 0.00 0.00 3.51
4437 10673 7.288621 TGCATAAGATCATATCGGTATCCATCT 59.711 37.037 0.00 2.07 0.00 2.90
4438 10674 8.797438 GCATAAGATCATATCGGTATCCATCTA 58.203 37.037 6.98 0.00 0.00 1.98
4442 10678 9.426534 AAGATCATATCGGTATCCATCTATGAA 57.573 33.333 6.98 0.00 31.52 2.57
4443 10679 9.426534 AGATCATATCGGTATCCATCTATGAAA 57.573 33.333 5.25 0.00 31.52 2.69
4444 10680 9.689976 GATCATATCGGTATCCATCTATGAAAG 57.310 37.037 0.00 0.00 31.52 2.62
4445 10681 8.823220 TCATATCGGTATCCATCTATGAAAGA 57.177 34.615 0.00 0.00 39.02 2.52
4446 10682 9.426534 TCATATCGGTATCCATCTATGAAAGAT 57.573 33.333 0.00 0.00 46.36 2.40
4447 10683 9.689976 CATATCGGTATCCATCTATGAAAGATC 57.310 37.037 0.00 0.00 43.42 2.75
4448 10684 7.969690 ATCGGTATCCATCTATGAAAGATCT 57.030 36.000 0.00 0.00 43.42 2.75
4449 10685 7.397892 TCGGTATCCATCTATGAAAGATCTC 57.602 40.000 0.00 0.00 43.42 2.75
4450 10686 7.178573 TCGGTATCCATCTATGAAAGATCTCT 58.821 38.462 0.00 0.00 43.42 3.10
4451 10687 8.329502 TCGGTATCCATCTATGAAAGATCTCTA 58.670 37.037 0.00 0.00 43.42 2.43
4452 10688 9.130661 CGGTATCCATCTATGAAAGATCTCTAT 57.869 37.037 0.00 0.00 43.42 1.98
4456 10692 8.198807 TCCATCTATGAAAGATCTCTATTGCA 57.801 34.615 0.00 0.00 43.42 4.08
4457 10693 8.312564 TCCATCTATGAAAGATCTCTATTGCAG 58.687 37.037 0.00 0.00 43.42 4.41
4458 10694 7.064847 CCATCTATGAAAGATCTCTATTGCAGC 59.935 40.741 0.00 0.00 43.42 5.25
4459 10695 6.155136 TCTATGAAAGATCTCTATTGCAGCG 58.845 40.000 0.00 0.00 0.00 5.18
4460 10696 4.391405 TGAAAGATCTCTATTGCAGCGA 57.609 40.909 0.00 0.00 0.00 4.93
4461 10697 4.758688 TGAAAGATCTCTATTGCAGCGAA 58.241 39.130 0.00 0.00 0.00 4.70
4462 10698 5.178061 TGAAAGATCTCTATTGCAGCGAAA 58.822 37.500 0.00 0.00 0.00 3.46
4463 10699 5.063944 TGAAAGATCTCTATTGCAGCGAAAC 59.936 40.000 0.00 0.00 0.00 2.78
4464 10700 4.399004 AGATCTCTATTGCAGCGAAACT 57.601 40.909 0.00 0.00 0.00 2.66
4465 10701 4.367450 AGATCTCTATTGCAGCGAAACTC 58.633 43.478 0.00 0.00 0.00 3.01
4466 10702 2.893637 TCTCTATTGCAGCGAAACTCC 58.106 47.619 0.00 0.00 0.00 3.85
4467 10703 1.936547 CTCTATTGCAGCGAAACTCCC 59.063 52.381 0.00 0.00 0.00 4.30
4468 10704 1.017387 CTATTGCAGCGAAACTCCCC 58.983 55.000 0.00 0.00 0.00 4.81
4469 10705 0.393808 TATTGCAGCGAAACTCCCCC 60.394 55.000 0.00 0.00 0.00 5.40
4470 10706 2.142292 ATTGCAGCGAAACTCCCCCT 62.142 55.000 0.00 0.00 0.00 4.79
4471 10707 1.485294 TTGCAGCGAAACTCCCCCTA 61.485 55.000 0.00 0.00 0.00 3.53
4472 10708 1.153349 GCAGCGAAACTCCCCCTAG 60.153 63.158 0.00 0.00 0.00 3.02
4473 10709 1.900545 GCAGCGAAACTCCCCCTAGT 61.901 60.000 0.00 0.00 0.00 2.57
4474 10710 0.175989 CAGCGAAACTCCCCCTAGTC 59.824 60.000 0.00 0.00 0.00 2.59
4475 10711 0.041386 AGCGAAACTCCCCCTAGTCT 59.959 55.000 0.00 0.00 0.00 3.24
4476 10712 0.175989 GCGAAACTCCCCCTAGTCTG 59.824 60.000 0.00 0.00 0.00 3.51
4477 10713 1.558233 CGAAACTCCCCCTAGTCTGT 58.442 55.000 0.00 0.00 0.00 3.41
4478 10714 1.477295 CGAAACTCCCCCTAGTCTGTC 59.523 57.143 0.00 0.00 0.00 3.51
4479 10715 1.832366 GAAACTCCCCCTAGTCTGTCC 59.168 57.143 0.00 0.00 0.00 4.02
4480 10716 0.042881 AACTCCCCCTAGTCTGTCCC 59.957 60.000 0.00 0.00 0.00 4.46
4481 10717 0.856311 ACTCCCCCTAGTCTGTCCCT 60.856 60.000 0.00 0.00 0.00 4.20
4482 10718 0.340208 CTCCCCCTAGTCTGTCCCTT 59.660 60.000 0.00 0.00 0.00 3.95
4483 10719 0.797579 TCCCCCTAGTCTGTCCCTTT 59.202 55.000 0.00 0.00 0.00 3.11
4484 10720 1.153565 TCCCCCTAGTCTGTCCCTTTT 59.846 52.381 0.00 0.00 0.00 2.27
4485 10721 1.993301 CCCCCTAGTCTGTCCCTTTTT 59.007 52.381 0.00 0.00 0.00 1.94
4486 10722 2.290960 CCCCCTAGTCTGTCCCTTTTTG 60.291 54.545 0.00 0.00 0.00 2.44
4487 10723 2.642807 CCCCTAGTCTGTCCCTTTTTGA 59.357 50.000 0.00 0.00 0.00 2.69
4488 10724 3.267031 CCCCTAGTCTGTCCCTTTTTGAT 59.733 47.826 0.00 0.00 0.00 2.57
4489 10725 4.473559 CCCCTAGTCTGTCCCTTTTTGATA 59.526 45.833 0.00 0.00 0.00 2.15
4490 10726 5.132816 CCCCTAGTCTGTCCCTTTTTGATAT 59.867 44.000 0.00 0.00 0.00 1.63
4491 10727 6.329197 CCCCTAGTCTGTCCCTTTTTGATATA 59.671 42.308 0.00 0.00 0.00 0.86
4492 10728 7.445945 CCCTAGTCTGTCCCTTTTTGATATAG 58.554 42.308 0.00 0.00 0.00 1.31
4493 10729 7.290248 CCCTAGTCTGTCCCTTTTTGATATAGA 59.710 40.741 0.00 0.00 0.00 1.98
4494 10730 8.705594 CCTAGTCTGTCCCTTTTTGATATAGAA 58.294 37.037 0.00 0.00 0.00 2.10
4497 10733 8.606830 AGTCTGTCCCTTTTTGATATAGAAAGT 58.393 33.333 0.00 0.00 0.00 2.66
4498 10734 9.232473 GTCTGTCCCTTTTTGATATAGAAAGTT 57.768 33.333 0.00 0.00 0.00 2.66
4499 10735 9.449719 TCTGTCCCTTTTTGATATAGAAAGTTC 57.550 33.333 0.00 0.00 0.00 3.01
4500 10736 8.575649 TGTCCCTTTTTGATATAGAAAGTTCC 57.424 34.615 0.00 0.00 0.00 3.62
4501 10737 8.167392 TGTCCCTTTTTGATATAGAAAGTTCCA 58.833 33.333 0.00 0.00 0.00 3.53
4502 10738 8.678199 GTCCCTTTTTGATATAGAAAGTTCCAG 58.322 37.037 0.00 0.00 0.00 3.86
4503 10739 7.339466 TCCCTTTTTGATATAGAAAGTTCCAGC 59.661 37.037 0.00 0.00 0.00 4.85
4504 10740 7.122650 CCCTTTTTGATATAGAAAGTTCCAGCA 59.877 37.037 0.00 0.00 0.00 4.41
4505 10741 8.522830 CCTTTTTGATATAGAAAGTTCCAGCAA 58.477 33.333 0.00 0.00 0.00 3.91
4506 10742 9.912634 CTTTTTGATATAGAAAGTTCCAGCAAA 57.087 29.630 0.00 0.00 0.00 3.68
4542 10778 6.586868 GAGTTCTTCTCTATCTGCACATTG 57.413 41.667 0.00 0.00 39.86 2.82
4544 10780 7.175347 AGTTCTTCTCTATCTGCACATTGTA 57.825 36.000 0.00 0.00 0.00 2.41
4545 10781 7.790027 AGTTCTTCTCTATCTGCACATTGTAT 58.210 34.615 0.00 0.00 0.00 2.29
4546 10782 7.710044 AGTTCTTCTCTATCTGCACATTGTATG 59.290 37.037 0.00 0.00 0.00 2.39
4547 10783 7.352079 TCTTCTCTATCTGCACATTGTATGA 57.648 36.000 0.00 0.00 0.00 2.15
4548 10784 7.785033 TCTTCTCTATCTGCACATTGTATGAA 58.215 34.615 0.00 0.00 0.00 2.57
4549 10785 7.708322 TCTTCTCTATCTGCACATTGTATGAAC 59.292 37.037 0.00 0.00 0.00 3.18
4550 10786 7.117285 TCTCTATCTGCACATTGTATGAACT 57.883 36.000 0.00 0.00 0.00 3.01
4551 10787 7.559486 TCTCTATCTGCACATTGTATGAACTT 58.441 34.615 0.00 0.00 0.00 2.66
4552 10788 7.493645 TCTCTATCTGCACATTGTATGAACTTG 59.506 37.037 0.00 0.00 0.00 3.16
4565 10801 7.887996 TGTATGAACTTGGAAAATTGCAATC 57.112 32.000 13.38 0.55 37.86 2.67
4569 10805 6.522946 TGAACTTGGAAAATTGCAATCATGA 58.477 32.000 13.38 0.00 37.86 3.07
4572 10808 5.410439 ACTTGGAAAATTGCAATCATGAAGC 59.590 36.000 13.38 14.60 37.86 3.86
4576 10812 6.101332 GGAAAATTGCAATCATGAAGCAGTA 58.899 36.000 20.84 11.61 39.72 2.74
4579 10815 8.556213 AAAATTGCAATCATGAAGCAGTAAAT 57.444 26.923 20.84 12.19 39.72 1.40
4581 10817 5.001237 TGCAATCATGAAGCAGTAAATGG 57.999 39.130 18.83 0.00 33.75 3.16
4584 10820 2.016318 TCATGAAGCAGTAAATGGGCG 58.984 47.619 0.00 0.00 0.00 6.13
4592 10828 0.609131 AGTAAATGGGCGTGCTTGCT 60.609 50.000 0.92 0.00 34.52 3.91
4595 10831 0.609131 AAATGGGCGTGCTTGCTACT 60.609 50.000 0.92 0.00 34.52 2.57
4606 10846 1.468914 GCTTGCTACTTACCAGGTTGC 59.531 52.381 0.00 0.00 36.35 4.17
4621 10861 4.803329 AGGTTGCCTTCCTGATCATTAT 57.197 40.909 0.00 0.00 33.62 1.28
4662 11630 5.804639 TGAATTCAAAGAGGTAAGCTGCTA 58.195 37.500 5.45 0.00 0.00 3.49
4678 11646 1.429148 GCTAGTATGCTGCGCCGTTT 61.429 55.000 4.18 0.00 0.00 3.60
4705 11673 3.510719 CCAAATAGCACCATTTTGACGG 58.489 45.455 0.00 0.00 33.24 4.79
4707 11675 1.832883 ATAGCACCATTTTGACGGCA 58.167 45.000 0.00 0.00 0.00 5.69
4714 11682 2.627699 ACCATTTTGACGGCAACAAGAT 59.372 40.909 1.19 0.00 32.79 2.40
4727 11695 3.131396 CAACAAGATATGCCCGTCTACC 58.869 50.000 0.00 0.00 0.00 3.18
4742 11710 5.479306 CCGTCTACCTTTCATTCTTCTGAA 58.521 41.667 0.00 0.00 36.54 3.02
4762 11730 6.885918 TCTGAAAGAAAATGGTATGCTCATCA 59.114 34.615 0.00 0.00 42.31 3.07
4785 11753 4.101741 AGCAGTTAGTTTGGAGAACAGACT 59.898 41.667 0.00 0.00 45.51 3.24
4792 11760 1.444553 GGAGAACAGACTGACGGCG 60.445 63.158 10.08 4.80 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.727726 TGATCTTGTTCGAAAGTGCTCA 58.272 40.909 0.00 0.00 0.00 4.26
11 12 4.732285 TTGATCTTGTTCGAAAGTGCTC 57.268 40.909 0.00 0.00 0.00 4.26
14 15 7.912949 TCAAAATTGATCTTGTTCGAAAGTG 57.087 32.000 0.00 0.00 31.01 3.16
20 21 6.693761 TGCATTCAAAATTGATCTTGTTCG 57.306 33.333 0.00 0.00 37.00 3.95
108 109 8.896320 AAAACTTGGTGAAACTTTGTAAAACT 57.104 26.923 0.00 0.00 36.74 2.66
162 163 5.074102 ACTTAACCCTTAAGCCCTAAACTGT 59.926 40.000 0.00 0.00 45.05 3.55
166 167 8.226810 ACTAAAACTTAACCCTTAAGCCCTAAA 58.773 33.333 0.00 0.00 45.05 1.85
168 169 7.333779 ACTAAAACTTAACCCTTAAGCCCTA 57.666 36.000 0.00 0.00 45.05 3.53
171 172 7.335422 GGAGTACTAAAACTTAACCCTTAAGCC 59.665 40.741 0.00 0.00 45.05 4.35
180 181 6.030548 ACGGAGGGAGTACTAAAACTTAAC 57.969 41.667 0.00 0.00 0.00 2.01
184 185 3.513119 GGAACGGAGGGAGTACTAAAACT 59.487 47.826 0.00 0.00 0.00 2.66
193 194 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
194 195 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
196 197 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
197 198 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
198 199 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
199 200 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
229 230 8.635328 TGCTCCGTATATAGTCACTTATTGAAA 58.365 33.333 0.00 0.00 35.39 2.69
230 231 8.173542 TGCTCCGTATATAGTCACTTATTGAA 57.826 34.615 0.00 0.00 35.39 2.69
232 233 8.812147 TTTGCTCCGTATATAGTCACTTATTG 57.188 34.615 0.00 0.00 0.00 1.90
233 234 9.998106 ATTTTGCTCCGTATATAGTCACTTATT 57.002 29.630 0.00 0.00 0.00 1.40
234 235 9.424319 CATTTTGCTCCGTATATAGTCACTTAT 57.576 33.333 0.00 0.00 0.00 1.73
235 236 8.635328 TCATTTTGCTCCGTATATAGTCACTTA 58.365 33.333 0.00 0.00 0.00 2.24
236 237 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
237 238 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
238 239 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
239 240 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
240 241 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
241 242 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
242 243 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
243 244 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
245 246 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
246 247 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
247 248 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
248 249 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
249 250 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
250 251 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
251 252 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
291 292 9.292195 TCAAATAGACTATCACATACGGATGTA 57.708 33.333 14.23 2.61 44.82 2.29
293 294 9.476202 TTTCAAATAGACTATCACATACGGATG 57.524 33.333 5.94 5.94 39.16 3.51
296 297 9.698309 AGATTTCAAATAGACTATCACATACGG 57.302 33.333 0.00 0.00 0.00 4.02
325 326 8.520351 CCTCCGTTCCTAAATAATTGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
326 327 7.122204 CCCTCCGTTCCTAAATAATTGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
328 329 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
330 331 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
331 332 5.427481 TCTCCCTCCGTTCCTAAATAATTGT 59.573 40.000 0.00 0.00 0.00 2.71
332 333 5.925509 TCTCCCTCCGTTCCTAAATAATTG 58.074 41.667 0.00 0.00 0.00 2.32
335 336 6.570654 ATTTCTCCCTCCGTTCCTAAATAA 57.429 37.500 0.00 0.00 0.00 1.40
336 337 7.867160 ATATTTCTCCCTCCGTTCCTAAATA 57.133 36.000 0.00 0.00 0.00 1.40
337 338 6.765355 ATATTTCTCCCTCCGTTCCTAAAT 57.235 37.500 0.00 0.00 0.00 1.40
338 339 6.570654 AATATTTCTCCCTCCGTTCCTAAA 57.429 37.500 0.00 0.00 0.00 1.85
339 340 6.570654 AAATATTTCTCCCTCCGTTCCTAA 57.429 37.500 0.00 0.00 0.00 2.69
340 341 6.157297 TCAAAATATTTCTCCCTCCGTTCCTA 59.843 38.462 0.10 0.00 0.00 2.94
341 342 5.045140 TCAAAATATTTCTCCCTCCGTTCCT 60.045 40.000 0.10 0.00 0.00 3.36
342 343 5.066117 GTCAAAATATTTCTCCCTCCGTTCC 59.934 44.000 0.10 0.00 0.00 3.62
343 344 5.646360 TGTCAAAATATTTCTCCCTCCGTTC 59.354 40.000 0.10 0.00 0.00 3.95
344 345 5.414765 GTGTCAAAATATTTCTCCCTCCGTT 59.585 40.000 0.10 0.00 0.00 4.44
345 346 4.941873 GTGTCAAAATATTTCTCCCTCCGT 59.058 41.667 0.10 0.00 0.00 4.69
346 347 4.335594 GGTGTCAAAATATTTCTCCCTCCG 59.664 45.833 0.10 0.00 0.00 4.63
347 348 5.261216 TGGTGTCAAAATATTTCTCCCTCC 58.739 41.667 0.10 2.05 0.00 4.30
348 349 6.625960 GCTTGGTGTCAAAATATTTCTCCCTC 60.626 42.308 0.10 0.00 31.77 4.30
349 350 5.185828 GCTTGGTGTCAAAATATTTCTCCCT 59.814 40.000 0.10 0.00 31.77 4.20
351 352 6.272822 AGCTTGGTGTCAAAATATTTCTCC 57.727 37.500 0.10 0.93 31.77 3.71
353 354 7.500141 ACAAAGCTTGGTGTCAAAATATTTCT 58.500 30.769 5.44 0.00 31.77 2.52
354 355 7.713764 ACAAAGCTTGGTGTCAAAATATTTC 57.286 32.000 5.44 0.00 31.77 2.17
408 1522 1.137872 AGCACTACTAGCCATGCTCAC 59.862 52.381 8.91 0.00 45.11 3.51
500 1622 1.757118 GGATGTCTGTTCCGGAGATCA 59.243 52.381 3.34 5.08 40.09 2.92
514 1636 1.534729 GAGTGGGGTGTTTGGATGTC 58.465 55.000 0.00 0.00 0.00 3.06
788 1932 1.543871 GCCGTCTCCCCAGTTTTTACA 60.544 52.381 0.00 0.00 0.00 2.41
959 2107 4.803426 CGACACTCTCCCGCAGCC 62.803 72.222 0.00 0.00 0.00 4.85
986 2137 2.595095 CCATTTCCTGCCCCGCTA 59.405 61.111 0.00 0.00 0.00 4.26
1148 2311 1.512310 GACGACGAGGCACGAGAAG 60.512 63.158 12.15 1.77 45.77 2.85
1359 2523 5.126707 AGCTTCCTAATTTGGCTTCAGAATG 59.873 40.000 0.45 0.00 37.54 2.67
1430 2605 4.454678 AGTGTGAACAAGAATCAGCAGAA 58.545 39.130 0.00 0.00 0.00 3.02
1509 2755 5.220567 GCAAAACAATTGGTCGACATGTTTT 60.221 36.000 28.49 28.49 45.82 2.43
1516 3208 1.786579 GCAGCAAAACAATTGGTCGAC 59.213 47.619 7.13 7.13 0.00 4.20
1579 5754 4.142534 TGCACTCTATGTTACGGAGTACAC 60.143 45.833 0.00 0.00 45.76 2.90
1585 5760 4.023107 GCTAGATGCACTCTATGTTACGGA 60.023 45.833 0.00 0.00 42.31 4.69
1586 5761 4.230657 GCTAGATGCACTCTATGTTACGG 58.769 47.826 0.00 0.00 42.31 4.02
1609 5789 8.608844 ACTAAAGAAAGAAGTTCAATCGACAT 57.391 30.769 5.50 0.00 38.86 3.06
1647 5835 5.736951 AAGGGTGCATAGATCAGATACTC 57.263 43.478 0.00 0.00 0.00 2.59
1648 5836 5.367937 ACAAAGGGTGCATAGATCAGATACT 59.632 40.000 0.00 0.00 0.00 2.12
1879 6192 4.943142 ATTGTTTGTGGCAAAGTTTGTG 57.057 36.364 16.70 0.00 0.00 3.33
1917 6230 4.454728 TCCAAAATCTGCTGGTAATTGC 57.545 40.909 0.00 0.00 34.11 3.56
1943 6256 2.100197 TGATCCAAGTAGAGGTGACCG 58.900 52.381 0.00 0.00 0.00 4.79
2013 6330 2.029649 GTGTCGGAACTGCTGGTAGTTA 60.030 50.000 4.22 0.00 40.78 2.24
2133 6450 1.821136 GGAGGGGCACTCTTGAATTTG 59.179 52.381 17.73 0.00 45.83 2.32
2370 6687 2.221299 ACGCCCACATGTGTACCCT 61.221 57.895 23.79 0.08 0.00 4.34
2467 8618 1.540267 AGCAAGCAGTGAAGAGCAATG 59.460 47.619 0.00 0.00 44.98 2.82
2574 8726 8.538409 AAAATTCATTCACAATTAAGGAGCAC 57.462 30.769 0.00 0.00 0.00 4.40
2719 8901 1.084289 CAGGCTTAGCGGTGGTTTAC 58.916 55.000 0.00 0.00 0.00 2.01
2723 8905 1.200519 TTATCAGGCTTAGCGGTGGT 58.799 50.000 0.00 0.00 0.00 4.16
2875 9060 0.973632 TCCACGACACTGCCAATAGT 59.026 50.000 0.00 0.00 0.00 2.12
2920 9105 2.421619 GTTGGAGTCTTCTGAGCAAGG 58.578 52.381 0.00 0.00 0.00 3.61
3019 9204 2.093973 ACAGCTTCCTGGACGAGTAATG 60.094 50.000 4.10 1.13 43.53 1.90
3455 9662 3.230134 GTCAGATAGGAGGCACATCTCT 58.770 50.000 0.00 0.00 34.39 3.10
3800 10022 1.133216 TCGCTGAATCTCTTGGTCTCG 59.867 52.381 0.00 0.00 0.00 4.04
3886 10114 0.739462 CCCGCGTCTTCTATGCAACA 60.739 55.000 4.92 0.00 40.39 3.33
3911 10143 3.008375 ACACTTATCAGCTTTCCTCAGCA 59.992 43.478 0.00 0.00 42.84 4.41
3929 10161 9.187455 CTTTTTAACTTACAAAACACACACACT 57.813 29.630 0.00 0.00 0.00 3.55
3968 10203 7.094118 TGGCCAGTATATACCAAAACAAGAAAC 60.094 37.037 0.00 0.00 0.00 2.78
4176 10412 5.567423 GCCAGGAAAAACAATGCTAGATTGT 60.567 40.000 12.15 12.15 43.35 2.71
4177 10413 4.866486 GCCAGGAAAAACAATGCTAGATTG 59.134 41.667 11.20 11.20 35.29 2.67
4178 10414 4.081476 GGCCAGGAAAAACAATGCTAGATT 60.081 41.667 0.00 0.00 0.00 2.40
4203 10439 3.578688 GCACTTGCTTCAAACATAAGGG 58.421 45.455 0.00 0.00 38.21 3.95
4217 10453 7.083858 TGATTTGTGTTATTTCTAGCACTTGC 58.916 34.615 0.00 0.00 39.18 4.01
4229 10465 6.074356 GCGTGCTTCTTTTGATTTGTGTTATT 60.074 34.615 0.00 0.00 0.00 1.40
4230 10466 5.402270 GCGTGCTTCTTTTGATTTGTGTTAT 59.598 36.000 0.00 0.00 0.00 1.89
4236 10472 2.401720 GTCGCGTGCTTCTTTTGATTTG 59.598 45.455 5.77 0.00 0.00 2.32
4237 10473 2.032799 TGTCGCGTGCTTCTTTTGATTT 59.967 40.909 5.77 0.00 0.00 2.17
4253 10489 0.382515 CCTAGCCTGAGTACTGTCGC 59.617 60.000 0.00 0.00 0.00 5.19
4254 10490 0.382515 GCCTAGCCTGAGTACTGTCG 59.617 60.000 0.00 0.00 0.00 4.35
4259 10495 1.825474 TGTTCAGCCTAGCCTGAGTAC 59.175 52.381 3.32 1.33 42.34 2.73
4260 10496 2.103373 CTGTTCAGCCTAGCCTGAGTA 58.897 52.381 3.32 0.00 42.34 2.59
4282 10518 3.746492 AGTTTTGTGATCTTAGGCACGTC 59.254 43.478 0.00 0.00 37.83 4.34
4287 10523 9.085250 GTAAGTAGTAGTTTTGTGATCTTAGGC 57.915 37.037 0.00 0.00 0.00 3.93
4298 10534 8.984764 TGCTGTACATTGTAAGTAGTAGTTTTG 58.015 33.333 0.00 0.00 0.00 2.44
4329 10565 3.947612 ACTCTTTCATGGATCATGCCT 57.052 42.857 3.23 0.00 41.18 4.75
4330 10566 4.205587 AGAACTCTTTCATGGATCATGCC 58.794 43.478 3.23 0.00 41.18 4.40
4331 10567 5.007823 CAGAGAACTCTTTCATGGATCATGC 59.992 44.000 1.24 0.00 38.56 4.06
4332 10568 6.114089 ACAGAGAACTCTTTCATGGATCATG 58.886 40.000 1.24 1.76 39.33 3.07
4333 10569 6.310764 ACAGAGAACTCTTTCATGGATCAT 57.689 37.500 1.24 0.00 37.98 2.45
4334 10570 5.623141 CGACAGAGAACTCTTTCATGGATCA 60.623 44.000 15.23 0.00 36.48 2.92
4335 10571 4.803088 CGACAGAGAACTCTTTCATGGATC 59.197 45.833 15.23 0.00 36.48 3.36
4336 10572 4.382470 CCGACAGAGAACTCTTTCATGGAT 60.382 45.833 15.23 0.00 36.48 3.41
4337 10573 3.056536 CCGACAGAGAACTCTTTCATGGA 60.057 47.826 15.23 0.00 36.48 3.41
4338 10574 3.257393 CCGACAGAGAACTCTTTCATGG 58.743 50.000 15.23 7.70 36.48 3.66
4339 10575 2.670414 GCCGACAGAGAACTCTTTCATG 59.330 50.000 15.23 8.57 36.48 3.07
4340 10576 2.564947 AGCCGACAGAGAACTCTTTCAT 59.435 45.455 15.23 1.92 36.48 2.57
4341 10577 1.964223 AGCCGACAGAGAACTCTTTCA 59.036 47.619 15.23 0.00 36.48 2.69
4342 10578 2.230266 AGAGCCGACAGAGAACTCTTTC 59.770 50.000 1.24 4.93 37.98 2.62
4343 10579 2.243810 AGAGCCGACAGAGAACTCTTT 58.756 47.619 1.24 0.00 37.98 2.52
4344 10580 1.917872 AGAGCCGACAGAGAACTCTT 58.082 50.000 1.24 0.00 37.98 2.85
4345 10581 1.917872 AAGAGCCGACAGAGAACTCT 58.082 50.000 0.00 0.00 41.37 3.24
4346 10582 2.734276 AAAGAGCCGACAGAGAACTC 57.266 50.000 0.00 0.00 0.00 3.01
4347 10583 2.365617 TGAAAAGAGCCGACAGAGAACT 59.634 45.455 0.00 0.00 0.00 3.01
4348 10584 2.734079 CTGAAAAGAGCCGACAGAGAAC 59.266 50.000 0.00 0.00 0.00 3.01
4349 10585 2.289072 CCTGAAAAGAGCCGACAGAGAA 60.289 50.000 0.00 0.00 0.00 2.87
4350 10586 1.273606 CCTGAAAAGAGCCGACAGAGA 59.726 52.381 0.00 0.00 0.00 3.10
4351 10587 1.273606 TCCTGAAAAGAGCCGACAGAG 59.726 52.381 0.00 0.00 0.00 3.35
4352 10588 1.338107 TCCTGAAAAGAGCCGACAGA 58.662 50.000 0.00 0.00 0.00 3.41
4353 10589 2.393271 ATCCTGAAAAGAGCCGACAG 57.607 50.000 0.00 0.00 0.00 3.51
4354 10590 2.303022 AGAATCCTGAAAAGAGCCGACA 59.697 45.455 0.00 0.00 0.00 4.35
4355 10591 2.979240 AGAATCCTGAAAAGAGCCGAC 58.021 47.619 0.00 0.00 0.00 4.79
4356 10592 3.703001 AAGAATCCTGAAAAGAGCCGA 57.297 42.857 0.00 0.00 0.00 5.54
4357 10593 4.508662 AGTAAGAATCCTGAAAAGAGCCG 58.491 43.478 0.00 0.00 0.00 5.52
4358 10594 6.052360 CCTAGTAAGAATCCTGAAAAGAGCC 58.948 44.000 0.00 0.00 0.00 4.70
4359 10595 6.052360 CCCTAGTAAGAATCCTGAAAAGAGC 58.948 44.000 0.00 0.00 0.00 4.09
4360 10596 6.052360 GCCCTAGTAAGAATCCTGAAAAGAG 58.948 44.000 0.00 0.00 0.00 2.85
4361 10597 5.487488 TGCCCTAGTAAGAATCCTGAAAAGA 59.513 40.000 0.00 0.00 0.00 2.52
4362 10598 5.745227 TGCCCTAGTAAGAATCCTGAAAAG 58.255 41.667 0.00 0.00 0.00 2.27
4363 10599 5.772393 TGCCCTAGTAAGAATCCTGAAAA 57.228 39.130 0.00 0.00 0.00 2.29
4364 10600 5.684704 CATGCCCTAGTAAGAATCCTGAAA 58.315 41.667 0.00 0.00 0.00 2.69
4365 10601 4.444876 GCATGCCCTAGTAAGAATCCTGAA 60.445 45.833 6.36 0.00 0.00 3.02
4366 10602 3.071602 GCATGCCCTAGTAAGAATCCTGA 59.928 47.826 6.36 0.00 0.00 3.86
4367 10603 3.072184 AGCATGCCCTAGTAAGAATCCTG 59.928 47.826 15.66 0.00 0.00 3.86
4368 10604 3.321950 AGCATGCCCTAGTAAGAATCCT 58.678 45.455 15.66 0.00 0.00 3.24
4369 10605 3.778954 AGCATGCCCTAGTAAGAATCC 57.221 47.619 15.66 0.00 0.00 3.01
4370 10606 5.476091 AGTAGCATGCCCTAGTAAGAATC 57.524 43.478 15.66 0.00 0.00 2.52
4371 10607 5.839063 TGTAGTAGCATGCCCTAGTAAGAAT 59.161 40.000 15.66 0.00 0.00 2.40
4372 10608 5.205821 TGTAGTAGCATGCCCTAGTAAGAA 58.794 41.667 15.66 0.00 0.00 2.52
4373 10609 4.800023 TGTAGTAGCATGCCCTAGTAAGA 58.200 43.478 15.66 0.00 0.00 2.10
4374 10610 5.620205 CGATGTAGTAGCATGCCCTAGTAAG 60.620 48.000 15.66 4.05 0.00 2.34
4375 10611 4.217767 CGATGTAGTAGCATGCCCTAGTAA 59.782 45.833 15.66 4.54 0.00 2.24
4376 10612 3.756963 CGATGTAGTAGCATGCCCTAGTA 59.243 47.826 15.66 5.75 0.00 1.82
4377 10613 2.558795 CGATGTAGTAGCATGCCCTAGT 59.441 50.000 15.66 6.81 0.00 2.57
4378 10614 2.558795 ACGATGTAGTAGCATGCCCTAG 59.441 50.000 15.66 5.85 0.00 3.02
4379 10615 2.594131 ACGATGTAGTAGCATGCCCTA 58.406 47.619 15.66 12.25 0.00 3.53
4380 10616 1.414158 ACGATGTAGTAGCATGCCCT 58.586 50.000 15.66 13.35 0.00 5.19
4381 10617 2.240493 AACGATGTAGTAGCATGCCC 57.760 50.000 15.66 5.34 0.00 5.36
4382 10618 3.458189 AGAAACGATGTAGTAGCATGCC 58.542 45.455 15.66 0.00 0.00 4.40
4383 10619 4.112634 TGAGAAACGATGTAGTAGCATGC 58.887 43.478 10.51 10.51 0.00 4.06
4384 10620 5.403766 GGATGAGAAACGATGTAGTAGCATG 59.596 44.000 0.00 0.00 0.00 4.06
4385 10621 5.509840 GGGATGAGAAACGATGTAGTAGCAT 60.510 44.000 0.00 0.00 0.00 3.79
4386 10622 4.202121 GGGATGAGAAACGATGTAGTAGCA 60.202 45.833 0.00 0.00 0.00 3.49
4387 10623 4.038162 AGGGATGAGAAACGATGTAGTAGC 59.962 45.833 0.00 0.00 0.00 3.58
4388 10624 5.776173 AGGGATGAGAAACGATGTAGTAG 57.224 43.478 0.00 0.00 0.00 2.57
4389 10625 5.681437 GCAAGGGATGAGAAACGATGTAGTA 60.681 44.000 0.00 0.00 0.00 1.82
4390 10626 4.759782 CAAGGGATGAGAAACGATGTAGT 58.240 43.478 0.00 0.00 0.00 2.73
4391 10627 3.557595 GCAAGGGATGAGAAACGATGTAG 59.442 47.826 0.00 0.00 0.00 2.74
4392 10628 3.055458 TGCAAGGGATGAGAAACGATGTA 60.055 43.478 0.00 0.00 0.00 2.29
4393 10629 2.290260 TGCAAGGGATGAGAAACGATGT 60.290 45.455 0.00 0.00 0.00 3.06
4394 10630 2.358957 TGCAAGGGATGAGAAACGATG 58.641 47.619 0.00 0.00 0.00 3.84
4395 10631 2.787473 TGCAAGGGATGAGAAACGAT 57.213 45.000 0.00 0.00 0.00 3.73
4396 10632 2.787473 ATGCAAGGGATGAGAAACGA 57.213 45.000 0.00 0.00 0.00 3.85
4397 10633 4.191544 TCTTATGCAAGGGATGAGAAACG 58.808 43.478 0.00 0.00 32.22 3.60
4398 10634 5.824624 TGATCTTATGCAAGGGATGAGAAAC 59.175 40.000 0.00 0.00 32.22 2.78
4399 10635 6.005066 TGATCTTATGCAAGGGATGAGAAA 57.995 37.500 0.00 0.00 32.22 2.52
4400 10636 5.635278 TGATCTTATGCAAGGGATGAGAA 57.365 39.130 0.00 0.00 32.22 2.87
4401 10637 5.837770 ATGATCTTATGCAAGGGATGAGA 57.162 39.130 0.00 0.00 32.22 3.27
4402 10638 6.479331 CGATATGATCTTATGCAAGGGATGAG 59.521 42.308 5.88 0.00 32.22 2.90
4403 10639 6.343703 CGATATGATCTTATGCAAGGGATGA 58.656 40.000 5.88 0.00 32.22 2.92
4404 10640 5.526479 CCGATATGATCTTATGCAAGGGATG 59.474 44.000 5.88 0.00 32.22 3.51
4405 10641 5.190528 ACCGATATGATCTTATGCAAGGGAT 59.809 40.000 5.88 0.00 32.22 3.85
4406 10642 4.532126 ACCGATATGATCTTATGCAAGGGA 59.468 41.667 5.88 0.00 32.22 4.20
4407 10643 4.836825 ACCGATATGATCTTATGCAAGGG 58.163 43.478 5.88 3.00 32.22 3.95
4408 10644 6.703607 GGATACCGATATGATCTTATGCAAGG 59.296 42.308 5.88 6.65 32.22 3.61
4409 10645 7.267857 TGGATACCGATATGATCTTATGCAAG 58.732 38.462 5.88 0.00 0.00 4.01
4410 10646 7.181569 TGGATACCGATATGATCTTATGCAA 57.818 36.000 5.88 0.00 0.00 4.08
4411 10647 6.790232 TGGATACCGATATGATCTTATGCA 57.210 37.500 5.88 0.00 0.00 3.96
4412 10648 7.665690 AGATGGATACCGATATGATCTTATGC 58.334 38.462 5.88 0.00 0.00 3.14
4416 10652 9.426534 TTCATAGATGGATACCGATATGATCTT 57.573 33.333 0.00 0.00 30.58 2.40
4417 10653 9.426534 TTTCATAGATGGATACCGATATGATCT 57.573 33.333 0.00 0.00 30.58 2.75
4418 10654 9.689976 CTTTCATAGATGGATACCGATATGATC 57.310 37.037 0.00 0.00 30.58 2.92
4419 10655 9.426534 TCTTTCATAGATGGATACCGATATGAT 57.573 33.333 0.00 0.00 30.58 2.45
4420 10656 8.823220 TCTTTCATAGATGGATACCGATATGA 57.177 34.615 0.00 0.00 0.00 2.15
4421 10657 9.689976 GATCTTTCATAGATGGATACCGATATG 57.310 37.037 0.00 0.00 43.75 1.78
4422 10658 9.653516 AGATCTTTCATAGATGGATACCGATAT 57.346 33.333 0.00 0.00 43.75 1.63
4423 10659 9.126151 GAGATCTTTCATAGATGGATACCGATA 57.874 37.037 0.00 0.00 43.75 2.92
4424 10660 7.838696 AGAGATCTTTCATAGATGGATACCGAT 59.161 37.037 0.00 0.00 43.75 4.18
4425 10661 7.178573 AGAGATCTTTCATAGATGGATACCGA 58.821 38.462 0.00 0.00 43.75 4.69
4426 10662 7.403312 AGAGATCTTTCATAGATGGATACCG 57.597 40.000 0.00 0.00 43.75 4.02
4430 10666 8.823794 TGCAATAGAGATCTTTCATAGATGGAT 58.176 33.333 0.00 0.00 43.75 3.41
4431 10667 8.198807 TGCAATAGAGATCTTTCATAGATGGA 57.801 34.615 0.00 0.00 43.75 3.41
4432 10668 7.064847 GCTGCAATAGAGATCTTTCATAGATGG 59.935 40.741 0.00 0.00 43.75 3.51
4433 10669 7.201453 CGCTGCAATAGAGATCTTTCATAGATG 60.201 40.741 0.00 0.00 43.75 2.90
4434 10670 6.812656 CGCTGCAATAGAGATCTTTCATAGAT 59.187 38.462 0.00 0.00 46.41 1.98
4435 10671 6.015940 TCGCTGCAATAGAGATCTTTCATAGA 60.016 38.462 0.00 0.00 37.28 1.98
4436 10672 6.155136 TCGCTGCAATAGAGATCTTTCATAG 58.845 40.000 0.00 0.00 29.69 2.23
4437 10673 6.089249 TCGCTGCAATAGAGATCTTTCATA 57.911 37.500 0.00 0.00 29.69 2.15
4438 10674 4.953667 TCGCTGCAATAGAGATCTTTCAT 58.046 39.130 0.00 0.00 29.69 2.57
4439 10675 4.391405 TCGCTGCAATAGAGATCTTTCA 57.609 40.909 0.00 0.00 29.69 2.69
4440 10676 5.293079 AGTTTCGCTGCAATAGAGATCTTTC 59.707 40.000 0.00 0.00 35.07 2.62
4441 10677 5.181748 AGTTTCGCTGCAATAGAGATCTTT 58.818 37.500 0.00 0.00 35.07 2.52
4442 10678 4.764172 AGTTTCGCTGCAATAGAGATCTT 58.236 39.130 0.00 0.00 35.07 2.40
4443 10679 4.367450 GAGTTTCGCTGCAATAGAGATCT 58.633 43.478 0.00 0.00 35.07 2.75
4444 10680 3.492756 GGAGTTTCGCTGCAATAGAGATC 59.507 47.826 0.00 0.00 35.07 2.75
4445 10681 3.462021 GGAGTTTCGCTGCAATAGAGAT 58.538 45.455 0.00 0.00 35.07 2.75
4446 10682 2.418746 GGGAGTTTCGCTGCAATAGAGA 60.419 50.000 0.00 0.00 37.27 3.10
4447 10683 1.936547 GGGAGTTTCGCTGCAATAGAG 59.063 52.381 0.00 0.00 37.27 2.43
4448 10684 1.406887 GGGGAGTTTCGCTGCAATAGA 60.407 52.381 0.00 0.00 37.27 1.98
4449 10685 1.017387 GGGGAGTTTCGCTGCAATAG 58.983 55.000 0.00 0.00 37.27 1.73
4450 10686 0.393808 GGGGGAGTTTCGCTGCAATA 60.394 55.000 0.00 0.00 37.27 1.90
4451 10687 1.678970 GGGGGAGTTTCGCTGCAAT 60.679 57.895 0.00 0.00 37.27 3.56
4452 10688 1.485294 TAGGGGGAGTTTCGCTGCAA 61.485 55.000 0.00 0.00 37.27 4.08
4453 10689 1.899437 CTAGGGGGAGTTTCGCTGCA 61.899 60.000 0.00 0.00 37.27 4.41
4454 10690 1.153349 CTAGGGGGAGTTTCGCTGC 60.153 63.158 0.00 0.00 34.52 5.25
4455 10691 0.175989 GACTAGGGGGAGTTTCGCTG 59.824 60.000 0.00 0.00 0.00 5.18
4456 10692 0.041386 AGACTAGGGGGAGTTTCGCT 59.959 55.000 0.00 0.00 0.00 4.93
4457 10693 0.175989 CAGACTAGGGGGAGTTTCGC 59.824 60.000 0.00 0.00 0.00 4.70
4458 10694 1.477295 GACAGACTAGGGGGAGTTTCG 59.523 57.143 0.00 0.00 0.00 3.46
4459 10695 1.832366 GGACAGACTAGGGGGAGTTTC 59.168 57.143 0.00 0.00 0.00 2.78
4460 10696 1.555058 GGGACAGACTAGGGGGAGTTT 60.555 57.143 0.00 0.00 0.00 2.66
4461 10697 0.042881 GGGACAGACTAGGGGGAGTT 59.957 60.000 0.00 0.00 0.00 3.01
4462 10698 0.856311 AGGGACAGACTAGGGGGAGT 60.856 60.000 0.00 0.00 0.00 3.85
4463 10699 0.340208 AAGGGACAGACTAGGGGGAG 59.660 60.000 0.00 0.00 0.00 4.30
4464 10700 0.797579 AAAGGGACAGACTAGGGGGA 59.202 55.000 0.00 0.00 0.00 4.81
4465 10701 1.670059 AAAAGGGACAGACTAGGGGG 58.330 55.000 0.00 0.00 0.00 5.40
4466 10702 2.642807 TCAAAAAGGGACAGACTAGGGG 59.357 50.000 0.00 0.00 0.00 4.79
4467 10703 4.576330 ATCAAAAAGGGACAGACTAGGG 57.424 45.455 0.00 0.00 0.00 3.53
4468 10704 8.251383 TCTATATCAAAAAGGGACAGACTAGG 57.749 38.462 0.00 0.00 0.00 3.02
4471 10707 8.606830 ACTTTCTATATCAAAAAGGGACAGACT 58.393 33.333 8.44 0.00 34.94 3.24
4472 10708 8.794335 ACTTTCTATATCAAAAAGGGACAGAC 57.206 34.615 8.44 0.00 34.94 3.51
4473 10709 9.449719 GAACTTTCTATATCAAAAAGGGACAGA 57.550 33.333 8.44 0.00 34.94 3.41
4474 10710 8.678199 GGAACTTTCTATATCAAAAAGGGACAG 58.322 37.037 8.44 0.00 34.94 3.51
4475 10711 8.167392 TGGAACTTTCTATATCAAAAAGGGACA 58.833 33.333 8.44 3.24 34.94 4.02
4476 10712 8.575649 TGGAACTTTCTATATCAAAAAGGGAC 57.424 34.615 8.44 0.00 34.94 4.46
4477 10713 7.339466 GCTGGAACTTTCTATATCAAAAAGGGA 59.661 37.037 8.44 0.00 34.94 4.20
4478 10714 7.122650 TGCTGGAACTTTCTATATCAAAAAGGG 59.877 37.037 8.44 0.00 34.94 3.95
4479 10715 8.055279 TGCTGGAACTTTCTATATCAAAAAGG 57.945 34.615 8.44 0.00 34.94 3.11
4480 10716 9.912634 TTTGCTGGAACTTTCTATATCAAAAAG 57.087 29.630 0.00 0.00 36.35 2.27
4505 10741 6.721704 AGAAGAACTCTTTCATGCCTTTTT 57.278 33.333 0.00 0.00 36.11 1.94
4506 10742 6.324561 GAGAAGAACTCTTTCATGCCTTTT 57.675 37.500 0.00 0.00 41.94 2.27
4507 10743 5.956068 GAGAAGAACTCTTTCATGCCTTT 57.044 39.130 0.00 0.00 41.94 3.11
4519 10755 6.105333 ACAATGTGCAGATAGAGAAGAACTC 58.895 40.000 0.00 0.00 45.22 3.01
4520 10756 6.047511 ACAATGTGCAGATAGAGAAGAACT 57.952 37.500 0.00 0.00 0.00 3.01
4540 10776 7.930325 TGATTGCAATTTTCCAAGTTCATACAA 59.070 29.630 14.33 0.00 0.00 2.41
4542 10778 7.887996 TGATTGCAATTTTCCAAGTTCATAC 57.112 32.000 14.33 0.00 0.00 2.39
4544 10780 7.162761 TCATGATTGCAATTTTCCAAGTTCAT 58.837 30.769 14.33 6.22 0.00 2.57
4545 10781 6.522946 TCATGATTGCAATTTTCCAAGTTCA 58.477 32.000 14.33 3.89 0.00 3.18
4546 10782 7.424227 TTCATGATTGCAATTTTCCAAGTTC 57.576 32.000 14.33 0.00 0.00 3.01
4547 10783 6.072893 GCTTCATGATTGCAATTTTCCAAGTT 60.073 34.615 14.33 0.00 0.00 2.66
4548 10784 5.410439 GCTTCATGATTGCAATTTTCCAAGT 59.590 36.000 14.33 0.00 0.00 3.16
4549 10785 5.410132 TGCTTCATGATTGCAATTTTCCAAG 59.590 36.000 14.33 12.64 33.48 3.61
4550 10786 5.306394 TGCTTCATGATTGCAATTTTCCAA 58.694 33.333 14.33 2.90 33.48 3.53
4551 10787 4.895961 TGCTTCATGATTGCAATTTTCCA 58.104 34.783 14.33 7.20 33.48 3.53
4552 10788 4.933400 ACTGCTTCATGATTGCAATTTTCC 59.067 37.500 14.33 0.81 36.22 3.13
4565 10801 1.745087 ACGCCCATTTACTGCTTCATG 59.255 47.619 0.00 0.00 0.00 3.07
4569 10805 0.609131 AGCACGCCCATTTACTGCTT 60.609 50.000 0.00 0.00 34.49 3.91
4572 10808 0.456653 GCAAGCACGCCCATTTACTG 60.457 55.000 0.00 0.00 0.00 2.74
4576 10812 0.609131 AGTAGCAAGCACGCCCATTT 60.609 50.000 0.00 0.00 0.00 2.32
4579 10815 0.672401 GTAAGTAGCAAGCACGCCCA 60.672 55.000 0.00 0.00 0.00 5.36
4581 10817 0.672401 TGGTAAGTAGCAAGCACGCC 60.672 55.000 0.00 0.00 0.00 5.68
4584 10820 2.474410 ACCTGGTAAGTAGCAAGCAC 57.526 50.000 0.00 0.00 32.78 4.40
4592 10828 2.627933 AGGAAGGCAACCTGGTAAGTA 58.372 47.619 0.00 0.00 36.30 2.24
4606 10846 6.017109 CCCGTTAAACATAATGATCAGGAAGG 60.017 42.308 0.09 0.00 0.00 3.46
4616 10856 5.799936 CAGAAGCAACCCGTTAAACATAATG 59.200 40.000 0.00 0.00 0.00 1.90
4617 10857 5.708230 TCAGAAGCAACCCGTTAAACATAAT 59.292 36.000 0.00 0.00 0.00 1.28
4618 10858 5.064558 TCAGAAGCAACCCGTTAAACATAA 58.935 37.500 0.00 0.00 0.00 1.90
4621 10861 2.920524 TCAGAAGCAACCCGTTAAACA 58.079 42.857 0.00 0.00 0.00 2.83
4678 11646 0.042431 ATGGTGCTATTTGGGGGCAA 59.958 50.000 0.00 0.00 37.73 4.52
4683 11651 3.510719 CGTCAAAATGGTGCTATTTGGG 58.489 45.455 0.00 0.00 35.34 4.12
4685 11653 2.923020 GCCGTCAAAATGGTGCTATTTG 59.077 45.455 0.00 0.00 35.81 2.32
4705 11673 1.668419 AGACGGGCATATCTTGTTGC 58.332 50.000 0.00 0.00 38.14 4.17
4707 11675 3.039011 AGGTAGACGGGCATATCTTGTT 58.961 45.455 0.00 0.00 0.00 2.83
4714 11682 3.709653 AGAATGAAAGGTAGACGGGCATA 59.290 43.478 0.00 0.00 0.00 3.14
4742 11710 5.511234 GCTGATGAGCATACCATTTTCTT 57.489 39.130 0.00 0.00 45.46 2.52
4762 11730 4.101741 AGTCTGTTCTCCAAACTAACTGCT 59.898 41.667 0.00 0.00 0.00 4.24
4765 11733 5.602628 GTCAGTCTGTTCTCCAAACTAACT 58.397 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.