Multiple sequence alignment - TraesCS5D01G401600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G401600 chr5D 100.000 3836 0 0 1 3836 467261102 467264937 0.000000e+00 7084.0
1 TraesCS5D01G401600 chr5D 90.683 161 13 1 2 162 253390409 253390567 3.000000e-51 213.0
2 TraesCS5D01G401600 chr7B 93.508 1987 95 12 1021 2988 59646712 59644741 0.000000e+00 2924.0
3 TraesCS5D01G401600 chr7B 88.475 1961 180 17 1242 3196 664079668 664077748 0.000000e+00 2327.0
4 TraesCS5D01G401600 chr5B 91.098 1539 128 9 1673 3204 491849724 491851260 0.000000e+00 2074.0
5 TraesCS5D01G401600 chr5B 90.796 1532 133 8 1673 3197 419521240 419522770 0.000000e+00 2041.0
6 TraesCS5D01G401600 chr5B 90.438 753 54 10 2 751 573864954 573865691 0.000000e+00 976.0
7 TraesCS5D01G401600 chr5B 88.832 394 36 2 1237 1622 491849331 491849724 9.640000e-131 477.0
8 TraesCS5D01G401600 chr5B 88.579 394 37 2 1237 1622 419520847 419521240 4.490000e-129 472.0
9 TraesCS5D01G401600 chr2D 90.796 1532 133 8 1673 3197 617965967 617967497 0.000000e+00 2041.0
10 TraesCS5D01G401600 chr2D 88.579 394 37 2 1237 1622 617965574 617965967 4.490000e-129 472.0
11 TraesCS5D01G401600 chr2D 88.889 234 20 3 1022 1249 101557305 101557538 2.260000e-72 283.0
12 TraesCS5D01G401600 chr2D 90.062 161 13 3 2 162 507459764 507459921 5.020000e-49 206.0
13 TraesCS5D01G401600 chr2D 96.875 32 1 0 1052 1083 42568682 42568651 2.000000e-03 54.7
14 TraesCS5D01G401600 chr2B 90.790 1531 132 9 1673 3196 795980979 795982507 0.000000e+00 2037.0
15 TraesCS5D01G401600 chr2B 82.349 1473 225 22 1737 3197 85696562 85698011 0.000000e+00 1247.0
16 TraesCS5D01G401600 chr2B 88.579 394 37 2 1237 1622 795980586 795980979 4.490000e-129 472.0
17 TraesCS5D01G401600 chr2B 91.250 160 13 1 3 162 695434657 695434815 2.320000e-52 217.0
18 TraesCS5D01G401600 chr5A 89.346 1483 140 12 1721 3193 469664661 469666135 0.000000e+00 1847.0
19 TraesCS5D01G401600 chr5A 88.571 595 30 13 166 751 587906924 587907489 0.000000e+00 688.0
20 TraesCS5D01G401600 chr5A 83.112 527 56 12 3191 3685 587909519 587910044 2.100000e-122 449.0
21 TraesCS5D01G401600 chr5A 87.390 341 37 2 1288 1622 138081787 138081447 1.670000e-103 387.0
22 TraesCS5D01G401600 chr5A 86.383 235 24 7 1022 1249 138082094 138081861 2.290000e-62 250.0
23 TraesCS5D01G401600 chr5A 89.840 187 17 2 777 962 587909347 587909532 4.950000e-59 239.0
24 TraesCS5D01G401600 chr3A 90.542 1237 111 6 1673 2905 34993692 34992458 0.000000e+00 1631.0
25 TraesCS5D01G401600 chr3A 88.889 162 16 2 2 162 733479510 733479350 8.410000e-47 198.0
26 TraesCS5D01G401600 chr7A 88.114 1363 151 6 1843 3195 727382174 727380813 0.000000e+00 1609.0
27 TraesCS5D01G401600 chr7A 88.276 145 15 2 1477 1621 727383506 727383364 5.090000e-39 172.0
28 TraesCS5D01G401600 chr3B 91.131 451 33 5 2754 3197 98009098 98009548 4.240000e-169 604.0
29 TraesCS5D01G401600 chr7D 89.571 163 15 2 2 162 410521265 410521103 5.020000e-49 206.0
30 TraesCS5D01G401600 chr4A 90.062 161 11 3 2 162 77437791 77437946 1.810000e-48 204.0
31 TraesCS5D01G401600 chr1D 89.506 162 16 1 2 162 42980174 42980335 1.810000e-48 204.0
32 TraesCS5D01G401600 chr3D 89.441 161 16 1 2 162 458309844 458309685 6.500000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G401600 chr5D 467261102 467264937 3835 False 7084.000000 7084 100.000000 1 3836 1 chr5D.!!$F2 3835
1 TraesCS5D01G401600 chr7B 59644741 59646712 1971 True 2924.000000 2924 93.508000 1021 2988 1 chr7B.!!$R1 1967
2 TraesCS5D01G401600 chr7B 664077748 664079668 1920 True 2327.000000 2327 88.475000 1242 3196 1 chr7B.!!$R2 1954
3 TraesCS5D01G401600 chr5B 491849331 491851260 1929 False 1275.500000 2074 89.965000 1237 3204 2 chr5B.!!$F3 1967
4 TraesCS5D01G401600 chr5B 419520847 419522770 1923 False 1256.500000 2041 89.687500 1237 3197 2 chr5B.!!$F2 1960
5 TraesCS5D01G401600 chr5B 573864954 573865691 737 False 976.000000 976 90.438000 2 751 1 chr5B.!!$F1 749
6 TraesCS5D01G401600 chr2D 617965574 617967497 1923 False 1256.500000 2041 89.687500 1237 3197 2 chr2D.!!$F3 1960
7 TraesCS5D01G401600 chr2B 795980586 795982507 1921 False 1254.500000 2037 89.684500 1237 3196 2 chr2B.!!$F3 1959
8 TraesCS5D01G401600 chr2B 85696562 85698011 1449 False 1247.000000 1247 82.349000 1737 3197 1 chr2B.!!$F1 1460
9 TraesCS5D01G401600 chr5A 469664661 469666135 1474 False 1847.000000 1847 89.346000 1721 3193 1 chr5A.!!$F1 1472
10 TraesCS5D01G401600 chr5A 587906924 587910044 3120 False 458.666667 688 87.174333 166 3685 3 chr5A.!!$F2 3519
11 TraesCS5D01G401600 chr5A 138081447 138082094 647 True 318.500000 387 86.886500 1022 1622 2 chr5A.!!$R1 600
12 TraesCS5D01G401600 chr3A 34992458 34993692 1234 True 1631.000000 1631 90.542000 1673 2905 1 chr3A.!!$R1 1232
13 TraesCS5D01G401600 chr7A 727380813 727383506 2693 True 890.500000 1609 88.195000 1477 3195 2 chr7A.!!$R1 1718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 828 0.040692 GGACGTACGCGATATGCTGA 60.041 55.0 15.93 0.0 43.27 4.26 F
1016 1018 0.035439 GAGATGGAAGTCGGGGCAAA 60.035 55.0 0.00 0.0 0.00 3.68 F
1017 1019 0.322546 AGATGGAAGTCGGGGCAAAC 60.323 55.0 0.00 0.0 0.00 2.93 F
1994 4642 0.656259 CTGCTCCAATGTCATGCTCG 59.344 55.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 4807 0.034896 CGGCACCACCTCTAGTTTGT 59.965 55.0 0.0 0.0 35.61 2.83 R
2241 4890 0.036010 CGACAGAGCCAACCTGGATT 60.036 55.0 0.0 0.0 35.51 3.01 R
2801 5457 0.693049 GCCTGAAGAAACCTCCTCCA 59.307 55.0 0.0 0.0 0.00 3.86 R
3428 6363 0.109723 GTGGACACAAACCCAGCCTA 59.890 55.0 0.0 0.0 32.28 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.402616 AGGATTTGAAAATGGGAGTGGA 57.597 40.909 0.00 0.00 0.00 4.02
60 61 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
131 132 1.503818 TTTTTCGTCAGCTCGGGTGC 61.504 55.000 0.00 0.00 0.00 5.01
133 134 2.652382 TTTCGTCAGCTCGGGTGCAA 62.652 55.000 0.00 0.00 34.99 4.08
144 145 2.409870 GGGTGCAAATGAGCTCGGG 61.410 63.158 9.64 0.00 34.99 5.14
155 156 1.670949 GAGCTCGGGTGCAGAGATGA 61.671 60.000 0.00 0.00 37.93 2.92
162 163 2.749076 CGGGTGCAGAGATGAATTTTCA 59.251 45.455 0.00 0.00 42.14 2.69
251 253 2.347322 GCACCCCGCCAGCAAATAA 61.347 57.895 0.00 0.00 32.94 1.40
255 257 1.714899 CCCCGCCAGCAAATAACTCG 61.715 60.000 0.00 0.00 0.00 4.18
263 265 4.651994 CCAGCAAATAACTCGTGCTTTAG 58.348 43.478 0.00 0.00 46.25 1.85
366 368 1.399714 TCGCAGATATTCTCACCGGT 58.600 50.000 0.00 0.00 0.00 5.28
376 378 7.599245 CAGATATTCTCACCGGTTATAGGTTTC 59.401 40.741 2.97 0.00 40.59 2.78
415 417 1.957695 AAAAAGACGGACGGACGGC 60.958 57.895 6.00 2.29 43.75 5.68
487 489 1.001597 CGGTACACGGATAGAAGAGGC 60.002 57.143 0.00 0.00 39.42 4.70
515 517 1.806542 AGCACCACAGCATTAGTTTCG 59.193 47.619 0.00 0.00 36.85 3.46
597 599 1.801178 CAGCGTCCCTTTCTTTCTGTC 59.199 52.381 0.00 0.00 0.00 3.51
598 600 1.694696 AGCGTCCCTTTCTTTCTGTCT 59.305 47.619 0.00 0.00 0.00 3.41
599 601 2.070028 GCGTCCCTTTCTTTCTGTCTC 58.930 52.381 0.00 0.00 0.00 3.36
600 602 2.329379 CGTCCCTTTCTTTCTGTCTCG 58.671 52.381 0.00 0.00 0.00 4.04
601 603 2.288273 CGTCCCTTTCTTTCTGTCTCGT 60.288 50.000 0.00 0.00 0.00 4.18
602 604 3.318886 GTCCCTTTCTTTCTGTCTCGTC 58.681 50.000 0.00 0.00 0.00 4.20
603 605 3.006003 GTCCCTTTCTTTCTGTCTCGTCT 59.994 47.826 0.00 0.00 0.00 4.18
604 606 3.005897 TCCCTTTCTTTCTGTCTCGTCTG 59.994 47.826 0.00 0.00 0.00 3.51
605 607 3.321497 CCTTTCTTTCTGTCTCGTCTGG 58.679 50.000 0.00 0.00 0.00 3.86
606 608 3.005897 CCTTTCTTTCTGTCTCGTCTGGA 59.994 47.826 0.00 0.00 0.00 3.86
607 609 3.644884 TTCTTTCTGTCTCGTCTGGAC 57.355 47.619 0.00 0.00 0.00 4.02
608 610 2.865079 TCTTTCTGTCTCGTCTGGACT 58.135 47.619 0.00 0.00 35.04 3.85
609 611 2.814919 TCTTTCTGTCTCGTCTGGACTC 59.185 50.000 0.00 0.00 35.04 3.36
610 612 1.157585 TTCTGTCTCGTCTGGACTCG 58.842 55.000 0.00 0.00 35.04 4.18
611 613 1.135731 CTGTCTCGTCTGGACTCGC 59.864 63.158 0.00 0.00 35.04 5.03
612 614 1.302383 CTGTCTCGTCTGGACTCGCT 61.302 60.000 0.00 0.00 35.04 4.93
613 615 1.135731 GTCTCGTCTGGACTCGCTG 59.864 63.158 0.00 0.00 0.00 5.18
614 616 1.302591 TCTCGTCTGGACTCGCTGT 60.303 57.895 0.00 0.00 0.00 4.40
615 617 1.135731 CTCGTCTGGACTCGCTGTC 59.864 63.158 0.00 0.65 44.63 3.51
657 659 3.665971 CCTCCCAGCTTGGCCCTT 61.666 66.667 0.00 0.00 35.79 3.95
658 660 2.308722 CCTCCCAGCTTGGCCCTTA 61.309 63.158 0.00 0.00 35.79 2.69
659 661 1.649271 CCTCCCAGCTTGGCCCTTAT 61.649 60.000 0.00 0.00 35.79 1.73
660 662 0.179006 CTCCCAGCTTGGCCCTTATC 60.179 60.000 0.00 0.00 35.79 1.75
661 663 0.918799 TCCCAGCTTGGCCCTTATCA 60.919 55.000 0.00 0.00 35.79 2.15
662 664 0.466922 CCCAGCTTGGCCCTTATCAG 60.467 60.000 0.00 0.00 35.79 2.90
663 665 1.105759 CCAGCTTGGCCCTTATCAGC 61.106 60.000 0.00 0.00 0.00 4.26
664 666 1.153086 AGCTTGGCCCTTATCAGCG 60.153 57.895 0.00 0.00 0.00 5.18
665 667 1.153168 GCTTGGCCCTTATCAGCGA 60.153 57.895 0.00 0.00 0.00 4.93
666 668 0.536006 GCTTGGCCCTTATCAGCGAT 60.536 55.000 0.00 0.00 0.00 4.58
667 669 1.233019 CTTGGCCCTTATCAGCGATG 58.767 55.000 0.00 0.00 0.00 3.84
668 670 0.819259 TTGGCCCTTATCAGCGATGC 60.819 55.000 0.00 0.00 0.00 3.91
669 671 1.227943 GGCCCTTATCAGCGATGCA 60.228 57.895 0.00 0.00 0.00 3.96
670 672 1.510480 GGCCCTTATCAGCGATGCAC 61.510 60.000 0.00 0.00 0.00 4.57
671 673 1.835483 GCCCTTATCAGCGATGCACG 61.835 60.000 0.00 0.00 45.66 5.34
681 683 3.209429 CGATGCACGCTCAAATGTC 57.791 52.632 0.00 0.00 34.51 3.06
682 684 0.247814 CGATGCACGCTCAAATGTCC 60.248 55.000 0.00 0.00 34.51 4.02
683 685 0.804364 GATGCACGCTCAAATGTCCA 59.196 50.000 0.00 0.00 0.00 4.02
684 686 1.402968 GATGCACGCTCAAATGTCCAT 59.597 47.619 0.00 0.00 0.00 3.41
685 687 0.804364 TGCACGCTCAAATGTCCATC 59.196 50.000 0.00 0.00 0.00 3.51
686 688 0.804364 GCACGCTCAAATGTCCATCA 59.196 50.000 0.00 0.00 0.00 3.07
687 689 1.402968 GCACGCTCAAATGTCCATCAT 59.597 47.619 0.00 0.00 38.57 2.45
688 690 2.540361 GCACGCTCAAATGTCCATCATC 60.540 50.000 0.00 0.00 35.48 2.92
689 691 2.032550 CACGCTCAAATGTCCATCATCC 59.967 50.000 0.00 0.00 35.48 3.51
690 692 1.262417 CGCTCAAATGTCCATCATCCG 59.738 52.381 0.00 0.00 35.48 4.18
691 693 1.002033 GCTCAAATGTCCATCATCCGC 60.002 52.381 0.00 0.00 35.48 5.54
692 694 1.262417 CTCAAATGTCCATCATCCGCG 59.738 52.381 0.00 0.00 35.48 6.46
693 695 0.308684 CAAATGTCCATCATCCGCGG 59.691 55.000 22.12 22.12 35.48 6.46
694 696 0.180171 AAATGTCCATCATCCGCGGA 59.820 50.000 33.12 33.12 35.48 5.54
695 697 0.397941 AATGTCCATCATCCGCGGAT 59.602 50.000 34.60 34.60 35.48 4.18
707 709 4.576216 ATCCGCGGATGAGATGTATATC 57.424 45.455 38.62 0.00 32.98 1.63
708 710 3.352648 TCCGCGGATGAGATGTATATCA 58.647 45.455 27.28 0.00 35.70 2.15
709 711 3.954258 TCCGCGGATGAGATGTATATCAT 59.046 43.478 27.28 1.89 41.06 2.45
722 724 5.357742 TGTATATCATCACTGTTGCTGGT 57.642 39.130 0.00 0.00 0.00 4.00
723 725 5.118286 TGTATATCATCACTGTTGCTGGTG 58.882 41.667 0.00 0.00 35.06 4.17
724 726 1.830279 ATCATCACTGTTGCTGGTGG 58.170 50.000 0.00 0.00 34.57 4.61
725 727 0.473755 TCATCACTGTTGCTGGTGGT 59.526 50.000 0.00 0.00 34.57 4.16
726 728 0.594602 CATCACTGTTGCTGGTGGTG 59.405 55.000 0.00 0.00 38.05 4.17
727 729 0.538057 ATCACTGTTGCTGGTGGTGG 60.538 55.000 0.00 0.00 34.57 4.61
728 730 1.453745 CACTGTTGCTGGTGGTGGT 60.454 57.895 0.00 0.00 0.00 4.16
729 731 1.037030 CACTGTTGCTGGTGGTGGTT 61.037 55.000 0.00 0.00 0.00 3.67
730 732 0.324275 ACTGTTGCTGGTGGTGGTTT 60.324 50.000 0.00 0.00 0.00 3.27
731 733 0.102844 CTGTTGCTGGTGGTGGTTTG 59.897 55.000 0.00 0.00 0.00 2.93
732 734 0.323816 TGTTGCTGGTGGTGGTTTGA 60.324 50.000 0.00 0.00 0.00 2.69
733 735 1.039856 GTTGCTGGTGGTGGTTTGAT 58.960 50.000 0.00 0.00 0.00 2.57
734 736 1.412343 GTTGCTGGTGGTGGTTTGATT 59.588 47.619 0.00 0.00 0.00 2.57
735 737 2.625790 GTTGCTGGTGGTGGTTTGATTA 59.374 45.455 0.00 0.00 0.00 1.75
736 738 2.235016 TGCTGGTGGTGGTTTGATTAC 58.765 47.619 0.00 0.00 0.00 1.89
737 739 1.544246 GCTGGTGGTGGTTTGATTACC 59.456 52.381 0.00 0.00 38.73 2.85
738 740 2.870175 CTGGTGGTGGTTTGATTACCA 58.130 47.619 0.00 0.00 45.73 3.25
747 749 5.176407 TGGTTTGATTACCACTTTTCACG 57.824 39.130 0.00 0.00 43.14 4.35
748 750 4.036971 TGGTTTGATTACCACTTTTCACGG 59.963 41.667 0.00 0.00 43.14 4.94
749 751 3.907894 TTGATTACCACTTTTCACGGC 57.092 42.857 0.00 0.00 0.00 5.68
750 752 2.852449 TGATTACCACTTTTCACGGCA 58.148 42.857 0.00 0.00 0.00 5.69
751 753 2.550606 TGATTACCACTTTTCACGGCAC 59.449 45.455 0.00 0.00 0.00 5.01
752 754 1.310904 TTACCACTTTTCACGGCACC 58.689 50.000 0.00 0.00 0.00 5.01
753 755 0.180642 TACCACTTTTCACGGCACCA 59.819 50.000 0.00 0.00 0.00 4.17
754 756 0.467290 ACCACTTTTCACGGCACCAT 60.467 50.000 0.00 0.00 0.00 3.55
755 757 0.240945 CCACTTTTCACGGCACCATC 59.759 55.000 0.00 0.00 0.00 3.51
756 758 0.240945 CACTTTTCACGGCACCATCC 59.759 55.000 0.00 0.00 0.00 3.51
757 759 0.893727 ACTTTTCACGGCACCATCCC 60.894 55.000 0.00 0.00 0.00 3.85
758 760 0.893270 CTTTTCACGGCACCATCCCA 60.893 55.000 0.00 0.00 0.00 4.37
759 761 0.251564 TTTTCACGGCACCATCCCAT 60.252 50.000 0.00 0.00 0.00 4.00
760 762 0.679640 TTTCACGGCACCATCCCATC 60.680 55.000 0.00 0.00 0.00 3.51
761 763 2.516930 CACGGCACCATCCCATCC 60.517 66.667 0.00 0.00 0.00 3.51
762 764 4.175337 ACGGCACCATCCCATCCG 62.175 66.667 0.00 0.00 45.04 4.18
766 768 3.860605 CACCATCCCATCCGCGGA 61.861 66.667 33.12 33.12 0.00 5.54
767 769 2.849162 ACCATCCCATCCGCGGAT 60.849 61.111 34.60 34.60 40.94 4.18
768 770 1.535444 ACCATCCCATCCGCGGATA 60.535 57.895 38.48 24.99 38.08 2.59
769 771 0.909610 ACCATCCCATCCGCGGATAT 60.910 55.000 38.48 26.08 38.08 1.63
770 772 0.253044 CCATCCCATCCGCGGATATT 59.747 55.000 38.48 17.91 38.08 1.28
771 773 1.372582 CATCCCATCCGCGGATATTG 58.627 55.000 38.48 27.91 38.08 1.90
772 774 0.253044 ATCCCATCCGCGGATATTGG 59.747 55.000 38.48 34.30 38.39 3.16
773 775 1.377202 CCCATCCGCGGATATTGGG 60.377 63.158 38.08 38.08 31.74 4.12
774 776 2.040544 CCATCCGCGGATATTGGGC 61.041 63.158 38.48 0.00 32.93 5.36
778 780 4.347096 CGCGGATATTGGGCGTTA 57.653 55.556 0.00 0.00 44.52 3.18
779 781 2.607457 CGCGGATATTGGGCGTTAA 58.393 52.632 0.00 0.00 44.52 2.01
780 782 1.153353 CGCGGATATTGGGCGTTAAT 58.847 50.000 0.00 0.00 44.52 1.40
781 783 1.533731 CGCGGATATTGGGCGTTAATT 59.466 47.619 0.00 0.00 44.52 1.40
782 784 2.412325 CGCGGATATTGGGCGTTAATTC 60.412 50.000 0.00 0.00 44.52 2.17
783 785 2.550606 GCGGATATTGGGCGTTAATTCA 59.449 45.455 0.00 0.00 0.00 2.57
784 786 3.190535 GCGGATATTGGGCGTTAATTCAT 59.809 43.478 0.00 0.00 0.00 2.57
785 787 4.320935 GCGGATATTGGGCGTTAATTCATT 60.321 41.667 0.00 0.00 0.00 2.57
786 788 5.390613 CGGATATTGGGCGTTAATTCATTC 58.609 41.667 0.00 0.00 0.00 2.67
787 789 5.619086 CGGATATTGGGCGTTAATTCATTCC 60.619 44.000 0.00 0.00 0.00 3.01
788 790 5.242838 GGATATTGGGCGTTAATTCATTCCA 59.757 40.000 0.00 0.00 0.00 3.53
789 791 3.859411 TTGGGCGTTAATTCATTCCAC 57.141 42.857 0.00 0.00 0.00 4.02
790 792 3.080300 TGGGCGTTAATTCATTCCACT 57.920 42.857 0.00 0.00 0.00 4.00
791 793 3.013921 TGGGCGTTAATTCATTCCACTC 58.986 45.455 0.00 0.00 0.00 3.51
792 794 3.013921 GGGCGTTAATTCATTCCACTCA 58.986 45.455 0.00 0.00 0.00 3.41
793 795 3.181500 GGGCGTTAATTCATTCCACTCAC 60.181 47.826 0.00 0.00 0.00 3.51
794 796 3.438781 GGCGTTAATTCATTCCACTCACA 59.561 43.478 0.00 0.00 0.00 3.58
795 797 4.096382 GGCGTTAATTCATTCCACTCACAT 59.904 41.667 0.00 0.00 0.00 3.21
796 798 5.030295 GCGTTAATTCATTCCACTCACATG 58.970 41.667 0.00 0.00 0.00 3.21
797 799 5.572211 CGTTAATTCATTCCACTCACATGG 58.428 41.667 0.00 0.00 41.57 3.66
798 800 5.123820 CGTTAATTCATTCCACTCACATGGT 59.876 40.000 0.00 0.00 40.95 3.55
799 801 6.349280 CGTTAATTCATTCCACTCACATGGTT 60.349 38.462 0.00 0.00 40.95 3.67
800 802 7.378181 GTTAATTCATTCCACTCACATGGTTT 58.622 34.615 0.00 0.00 40.95 3.27
801 803 6.423776 AATTCATTCCACTCACATGGTTTT 57.576 33.333 0.00 0.00 40.95 2.43
802 804 4.852134 TCATTCCACTCACATGGTTTTG 57.148 40.909 0.00 0.00 40.95 2.44
803 805 4.214310 TCATTCCACTCACATGGTTTTGT 58.786 39.130 0.00 0.00 40.95 2.83
804 806 4.278170 TCATTCCACTCACATGGTTTTGTC 59.722 41.667 0.00 0.00 40.95 3.18
805 807 2.217750 TCCACTCACATGGTTTTGTCG 58.782 47.619 0.00 0.00 40.95 4.35
806 808 1.946768 CCACTCACATGGTTTTGTCGT 59.053 47.619 0.00 0.00 34.77 4.34
807 809 2.286950 CCACTCACATGGTTTTGTCGTG 60.287 50.000 0.00 0.00 34.77 4.35
808 810 1.946768 ACTCACATGGTTTTGTCGTGG 59.053 47.619 0.00 0.00 0.00 4.94
809 811 2.217750 CTCACATGGTTTTGTCGTGGA 58.782 47.619 0.00 0.00 0.00 4.02
810 812 1.944024 TCACATGGTTTTGTCGTGGAC 59.056 47.619 0.00 0.00 0.00 4.02
811 813 0.941542 ACATGGTTTTGTCGTGGACG 59.058 50.000 0.00 0.00 41.45 4.79
812 814 0.941542 CATGGTTTTGTCGTGGACGT 59.058 50.000 0.00 0.00 40.80 4.34
813 815 2.136728 CATGGTTTTGTCGTGGACGTA 58.863 47.619 0.00 0.00 40.80 3.57
814 816 1.569708 TGGTTTTGTCGTGGACGTAC 58.430 50.000 0.00 0.00 40.80 3.67
815 817 0.503961 GGTTTTGTCGTGGACGTACG 59.496 55.000 15.01 15.01 44.98 3.67
816 818 0.111574 GTTTTGTCGTGGACGTACGC 60.112 55.000 16.72 0.00 43.40 4.42
817 819 1.538946 TTTTGTCGTGGACGTACGCG 61.539 55.000 27.38 27.38 43.40 6.01
820 822 3.792904 TCGTGGACGTACGCGATA 58.207 55.556 31.25 11.89 46.94 2.92
821 823 2.310309 TCGTGGACGTACGCGATAT 58.690 52.632 31.25 0.00 46.94 1.63
822 824 0.041926 TCGTGGACGTACGCGATATG 60.042 55.000 31.25 4.48 46.94 1.78
823 825 1.594269 CGTGGACGTACGCGATATGC 61.594 60.000 29.21 0.73 46.47 3.14
824 826 0.317603 GTGGACGTACGCGATATGCT 60.318 55.000 15.93 0.00 43.27 3.79
825 827 0.317519 TGGACGTACGCGATATGCTG 60.318 55.000 15.93 0.00 43.27 4.41
826 828 0.040692 GGACGTACGCGATATGCTGA 60.041 55.000 15.93 0.00 43.27 4.26
827 829 1.401148 GGACGTACGCGATATGCTGAT 60.401 52.381 15.93 0.00 43.27 2.90
828 830 2.316792 GACGTACGCGATATGCTGATT 58.683 47.619 15.93 0.00 43.27 2.57
829 831 2.724690 GACGTACGCGATATGCTGATTT 59.275 45.455 15.93 0.00 43.27 2.17
830 832 2.724690 ACGTACGCGATATGCTGATTTC 59.275 45.455 15.93 0.00 43.27 2.17
831 833 2.090658 CGTACGCGATATGCTGATTTCC 59.909 50.000 15.93 0.00 43.27 3.13
832 834 2.238942 ACGCGATATGCTGATTTCCA 57.761 45.000 15.93 0.00 43.27 3.53
833 835 2.771089 ACGCGATATGCTGATTTCCAT 58.229 42.857 15.93 0.00 43.27 3.41
834 836 2.738846 ACGCGATATGCTGATTTCCATC 59.261 45.455 15.93 0.00 43.27 3.51
835 837 2.094894 CGCGATATGCTGATTTCCATCC 59.905 50.000 0.00 0.00 43.27 3.51
836 838 2.094894 GCGATATGCTGATTTCCATCCG 59.905 50.000 0.00 0.00 41.73 4.18
837 839 2.094894 CGATATGCTGATTTCCATCCGC 59.905 50.000 0.00 0.00 39.48 5.54
838 840 1.511850 TATGCTGATTTCCATCCGCG 58.488 50.000 0.00 0.00 41.37 6.46
839 841 1.168407 ATGCTGATTTCCATCCGCGG 61.168 55.000 22.12 22.12 41.37 6.46
840 842 2.546494 GCTGATTTCCATCCGCGGG 61.546 63.158 27.83 10.29 30.92 6.13
841 843 1.146041 CTGATTTCCATCCGCGGGA 59.854 57.895 27.83 12.48 35.55 5.14
842 844 0.250467 CTGATTTCCATCCGCGGGAT 60.250 55.000 27.83 14.79 44.21 3.85
854 856 5.622770 ATCCGCGGGATGTTAATTAATTC 57.377 39.130 27.83 2.35 41.43 2.17
855 857 3.816523 TCCGCGGGATGTTAATTAATTCC 59.183 43.478 27.83 16.37 0.00 3.01
856 858 3.818773 CCGCGGGATGTTAATTAATTCCT 59.181 43.478 20.10 2.36 0.00 3.36
857 859 4.083484 CCGCGGGATGTTAATTAATTCCTC 60.083 45.833 20.10 14.92 0.00 3.71
858 860 4.083484 CGCGGGATGTTAATTAATTCCTCC 60.083 45.833 20.74 14.84 0.00 4.30
859 861 4.825085 GCGGGATGTTAATTAATTCCTCCA 59.175 41.667 20.74 7.80 0.00 3.86
860 862 5.048713 GCGGGATGTTAATTAATTCCTCCAG 60.049 44.000 20.74 15.71 0.00 3.86
861 863 5.473504 CGGGATGTTAATTAATTCCTCCAGG 59.526 44.000 20.74 9.87 0.00 4.45
862 864 5.243954 GGGATGTTAATTAATTCCTCCAGGC 59.756 44.000 20.74 7.54 34.44 4.85
863 865 6.071320 GGATGTTAATTAATTCCTCCAGGCT 58.929 40.000 16.98 0.00 34.44 4.58
864 866 6.207614 GGATGTTAATTAATTCCTCCAGGCTC 59.792 42.308 16.98 1.27 34.44 4.70
865 867 6.327386 TGTTAATTAATTCCTCCAGGCTCT 57.673 37.500 3.39 0.00 34.44 4.09
866 868 6.731467 TGTTAATTAATTCCTCCAGGCTCTT 58.269 36.000 3.39 0.00 34.44 2.85
867 869 7.182060 TGTTAATTAATTCCTCCAGGCTCTTT 58.818 34.615 3.39 0.00 34.44 2.52
868 870 7.673926 TGTTAATTAATTCCTCCAGGCTCTTTT 59.326 33.333 3.39 0.00 34.44 2.27
869 871 6.782082 AATTAATTCCTCCAGGCTCTTTTC 57.218 37.500 0.00 0.00 34.44 2.29
870 872 2.816777 ATTCCTCCAGGCTCTTTTCC 57.183 50.000 0.00 0.00 34.44 3.13
871 873 1.444933 TTCCTCCAGGCTCTTTTCCA 58.555 50.000 0.00 0.00 34.44 3.53
872 874 1.673767 TCCTCCAGGCTCTTTTCCAT 58.326 50.000 0.00 0.00 34.44 3.41
873 875 1.283029 TCCTCCAGGCTCTTTTCCATG 59.717 52.381 0.00 0.00 34.44 3.66
874 876 1.684248 CCTCCAGGCTCTTTTCCATGG 60.684 57.143 4.97 4.97 0.00 3.66
875 877 0.323725 TCCAGGCTCTTTTCCATGGC 60.324 55.000 6.96 0.00 0.00 4.40
876 878 0.612732 CCAGGCTCTTTTCCATGGCA 60.613 55.000 6.96 0.00 0.00 4.92
877 879 1.481871 CAGGCTCTTTTCCATGGCAT 58.518 50.000 6.96 0.00 0.00 4.40
878 880 1.829222 CAGGCTCTTTTCCATGGCATT 59.171 47.619 6.96 0.00 0.00 3.56
879 881 2.235402 CAGGCTCTTTTCCATGGCATTT 59.765 45.455 6.96 0.00 0.00 2.32
880 882 2.908351 AGGCTCTTTTCCATGGCATTTT 59.092 40.909 6.96 0.00 0.00 1.82
881 883 3.328637 AGGCTCTTTTCCATGGCATTTTT 59.671 39.130 6.96 0.00 0.00 1.94
882 884 3.437741 GGCTCTTTTCCATGGCATTTTTG 59.562 43.478 6.96 0.00 0.00 2.44
883 885 4.067192 GCTCTTTTCCATGGCATTTTTGT 58.933 39.130 6.96 0.00 0.00 2.83
884 886 4.152938 GCTCTTTTCCATGGCATTTTTGTC 59.847 41.667 6.96 0.00 0.00 3.18
885 887 5.287674 TCTTTTCCATGGCATTTTTGTCA 57.712 34.783 6.96 0.00 0.00 3.58
886 888 5.055812 TCTTTTCCATGGCATTTTTGTCAC 58.944 37.500 6.96 0.00 0.00 3.67
887 889 4.686191 TTTCCATGGCATTTTTGTCACT 57.314 36.364 6.96 0.00 0.00 3.41
888 890 3.663995 TCCATGGCATTTTTGTCACTG 57.336 42.857 6.96 0.00 0.00 3.66
889 891 2.070783 CCATGGCATTTTTGTCACTGC 58.929 47.619 0.00 0.00 0.00 4.40
890 892 2.548280 CCATGGCATTTTTGTCACTGCA 60.548 45.455 0.00 0.00 36.34 4.41
891 893 2.512485 TGGCATTTTTGTCACTGCAG 57.488 45.000 13.48 13.48 36.34 4.41
892 894 2.030371 TGGCATTTTTGTCACTGCAGA 58.970 42.857 23.35 0.00 36.34 4.26
893 895 2.034939 TGGCATTTTTGTCACTGCAGAG 59.965 45.455 23.35 13.75 36.34 3.35
894 896 2.035066 GGCATTTTTGTCACTGCAGAGT 59.965 45.455 23.35 0.00 36.34 3.24
895 897 3.491447 GGCATTTTTGTCACTGCAGAGTT 60.491 43.478 23.35 0.00 36.34 3.01
896 898 4.261572 GGCATTTTTGTCACTGCAGAGTTA 60.262 41.667 23.35 3.27 36.34 2.24
897 899 5.464168 GCATTTTTGTCACTGCAGAGTTAT 58.536 37.500 23.35 0.00 34.77 1.89
898 900 5.344128 GCATTTTTGTCACTGCAGAGTTATG 59.656 40.000 23.35 7.93 34.77 1.90
899 901 6.441274 CATTTTTGTCACTGCAGAGTTATGT 58.559 36.000 23.35 0.00 0.00 2.29
900 902 6.449635 TTTTTGTCACTGCAGAGTTATGTT 57.550 33.333 23.35 0.00 0.00 2.71
901 903 6.449635 TTTTGTCACTGCAGAGTTATGTTT 57.550 33.333 23.35 0.00 0.00 2.83
902 904 5.422666 TTGTCACTGCAGAGTTATGTTTG 57.577 39.130 23.35 4.64 0.00 2.93
903 905 4.702831 TGTCACTGCAGAGTTATGTTTGA 58.297 39.130 23.35 7.28 0.00 2.69
904 906 5.122519 TGTCACTGCAGAGTTATGTTTGAA 58.877 37.500 23.35 0.00 0.00 2.69
905 907 5.588246 TGTCACTGCAGAGTTATGTTTGAAA 59.412 36.000 23.35 2.02 0.00 2.69
906 908 6.094742 TGTCACTGCAGAGTTATGTTTGAAAA 59.905 34.615 23.35 0.00 0.00 2.29
907 909 6.972328 GTCACTGCAGAGTTATGTTTGAAAAA 59.028 34.615 23.35 0.00 0.00 1.94
930 932 5.841957 AAAAATTGTCACTGCAGAGTTCT 57.158 34.783 23.35 0.00 0.00 3.01
931 933 5.841957 AAAATTGTCACTGCAGAGTTCTT 57.158 34.783 23.35 3.60 0.00 2.52
932 934 4.825546 AATTGTCACTGCAGAGTTCTTG 57.174 40.909 23.35 7.11 0.00 3.02
933 935 2.988010 TGTCACTGCAGAGTTCTTGT 57.012 45.000 23.35 0.00 0.00 3.16
934 936 2.554142 TGTCACTGCAGAGTTCTTGTG 58.446 47.619 23.35 6.41 0.00 3.33
935 937 1.262683 GTCACTGCAGAGTTCTTGTGC 59.737 52.381 23.35 1.45 45.81 4.57
936 938 1.139654 TCACTGCAGAGTTCTTGTGCT 59.860 47.619 23.35 0.00 45.80 4.40
937 939 1.945394 CACTGCAGAGTTCTTGTGCTT 59.055 47.619 23.35 0.00 45.80 3.91
938 940 3.133691 CACTGCAGAGTTCTTGTGCTTA 58.866 45.455 23.35 0.00 45.80 3.09
939 941 3.186001 CACTGCAGAGTTCTTGTGCTTAG 59.814 47.826 23.35 0.00 45.80 2.18
940 942 3.070159 ACTGCAGAGTTCTTGTGCTTAGA 59.930 43.478 23.35 0.00 45.80 2.10
941 943 3.657634 TGCAGAGTTCTTGTGCTTAGAG 58.342 45.455 8.72 0.00 45.80 2.43
942 944 2.414825 GCAGAGTTCTTGTGCTTAGAGC 59.585 50.000 0.00 0.00 42.51 4.09
986 988 3.110139 CGCAGGGCAACGCATTAT 58.890 55.556 0.00 0.00 37.60 1.28
987 989 1.433064 CGCAGGGCAACGCATTATT 59.567 52.632 0.00 0.00 37.60 1.40
988 990 0.866906 CGCAGGGCAACGCATTATTG 60.867 55.000 0.00 0.00 37.60 1.90
1002 1004 5.769967 GCATTATTGCTAGTACGGAGATG 57.230 43.478 2.33 0.00 45.77 2.90
1003 1005 4.627467 GCATTATTGCTAGTACGGAGATGG 59.373 45.833 2.33 0.00 45.77 3.51
1004 1006 5.566826 GCATTATTGCTAGTACGGAGATGGA 60.567 44.000 2.33 0.00 45.77 3.41
1005 1007 6.455647 CATTATTGCTAGTACGGAGATGGAA 58.544 40.000 2.33 0.00 0.00 3.53
1006 1008 4.592485 ATTGCTAGTACGGAGATGGAAG 57.408 45.455 2.33 0.00 0.00 3.46
1007 1009 3.014304 TGCTAGTACGGAGATGGAAGT 57.986 47.619 2.33 0.00 0.00 3.01
1008 1010 2.950309 TGCTAGTACGGAGATGGAAGTC 59.050 50.000 2.33 0.00 0.00 3.01
1009 1011 2.031857 GCTAGTACGGAGATGGAAGTCG 60.032 54.545 2.33 0.00 0.00 4.18
1010 1012 1.390565 AGTACGGAGATGGAAGTCGG 58.609 55.000 0.00 0.00 0.00 4.79
1011 1013 0.384669 GTACGGAGATGGAAGTCGGG 59.615 60.000 0.00 0.00 0.00 5.14
1012 1014 0.754217 TACGGAGATGGAAGTCGGGG 60.754 60.000 0.00 0.00 0.00 5.73
1013 1015 2.506472 GGAGATGGAAGTCGGGGC 59.494 66.667 0.00 0.00 0.00 5.80
1014 1016 2.367202 GGAGATGGAAGTCGGGGCA 61.367 63.158 0.00 0.00 0.00 5.36
1015 1017 1.602237 GAGATGGAAGTCGGGGCAA 59.398 57.895 0.00 0.00 0.00 4.52
1016 1018 0.035439 GAGATGGAAGTCGGGGCAAA 60.035 55.000 0.00 0.00 0.00 3.68
1017 1019 0.322546 AGATGGAAGTCGGGGCAAAC 60.323 55.000 0.00 0.00 0.00 2.93
1018 1020 1.304134 ATGGAAGTCGGGGCAAACC 60.304 57.895 0.00 0.00 39.11 3.27
1019 1021 1.789576 ATGGAAGTCGGGGCAAACCT 61.790 55.000 0.00 0.00 40.03 3.50
1187 1191 4.796495 GCCATCCCCGCCGTCTTT 62.796 66.667 0.00 0.00 0.00 2.52
1233 1237 4.394078 CTTCCGACGCCGACGACA 62.394 66.667 11.04 0.00 43.93 4.35
1402 2779 4.117661 GGAGCTCGCGTCCGTCTT 62.118 66.667 5.77 0.00 35.54 3.01
1494 3090 3.969802 GCGGCTGCACTTGCTTGT 61.970 61.111 14.08 0.00 42.66 3.16
1495 3091 2.723746 CGGCTGCACTTGCTTGTT 59.276 55.556 0.50 0.00 42.66 2.83
1583 3179 2.978824 GCCTGCTGGACGACCTTA 59.021 61.111 14.77 0.00 37.04 2.69
1592 3188 1.448013 GACGACCTTACCTGCCTGC 60.448 63.158 0.00 0.00 0.00 4.85
1652 3248 4.212913 TGCTGGAGGCGATCGCTC 62.213 66.667 36.25 28.72 45.43 5.03
1717 3313 1.064134 CATCGTGATGAGGCGACGA 59.936 57.895 3.74 0.00 45.42 4.20
1787 4428 3.141488 CTCGCCGCCTCCTACAGT 61.141 66.667 0.00 0.00 0.00 3.55
1994 4642 0.656259 CTGCTCCAATGTCATGCTCG 59.344 55.000 0.00 0.00 0.00 5.03
2118 4766 2.253758 GCTTCACGACTGCCTTGCA 61.254 57.895 0.00 0.00 36.92 4.08
2121 4769 4.374702 CACGACTGCCTTGCACGC 62.375 66.667 0.00 0.00 32.60 5.34
2241 4890 4.329545 GTGTCCCTGCTGCCCGAA 62.330 66.667 0.00 0.00 0.00 4.30
2375 5024 0.687354 ATTGTCGAGGTTGTGGCTCT 59.313 50.000 0.00 0.00 0.00 4.09
2561 5210 2.107366 CCTTGGAGGTTTGGTTGTTGT 58.893 47.619 0.00 0.00 0.00 3.32
2634 5290 3.844211 AGGTTGATGAGGTAGGTGCTTTA 59.156 43.478 0.00 0.00 0.00 1.85
2656 5312 3.121030 CTGTTTCTGAGGCGCCGG 61.121 66.667 23.20 15.60 0.00 6.13
2801 5457 1.377725 CGATTGCTTGCCTCCTGGT 60.378 57.895 0.00 0.00 35.27 4.00
2873 5531 0.246635 TAGCAAGAAGAGTGACGCCC 59.753 55.000 0.00 0.00 0.00 6.13
2881 5552 0.896226 AGAGTGACGCCCTTAGGAAC 59.104 55.000 0.00 0.00 33.47 3.62
2886 5557 2.433664 CGCCCTTAGGAACGCGTT 60.434 61.111 26.97 26.97 39.78 4.84
3040 5726 6.015940 TGGTTGCATGTTATGTATGTTTGTCA 60.016 34.615 0.00 0.00 0.00 3.58
3058 5744 1.148310 CAGGTTGATCGTGGTGTCAC 58.852 55.000 0.00 0.00 40.36 3.67
3137 6018 5.419471 CCGGTTTTCCATTAATTAACTGGGA 59.581 40.000 18.59 14.62 40.14 4.37
3168 6049 8.251383 TCTTCTCCTTAATTAATCGATGAGGT 57.749 34.615 0.00 0.00 0.00 3.85
3232 6151 2.089980 CTGCTGTTCTGGGGATTCAAG 58.910 52.381 0.00 0.00 0.00 3.02
3271 6190 4.280929 AGACCCTTTATGTGCCAAAACTTC 59.719 41.667 0.00 0.00 0.00 3.01
3281 6200 9.770097 TTATGTGCCAAAACTTCATTATGAAAA 57.230 25.926 9.05 0.00 35.73 2.29
3297 6216 2.961768 AAAAATGCCCGCTCGGTG 59.038 55.556 7.59 0.40 0.00 4.94
3309 6228 2.356382 CCGCTCGGTGCCAAAAATATAA 59.644 45.455 0.00 0.00 38.78 0.98
3340 6259 3.996150 TCTACATATTTCGTCCGTCCC 57.004 47.619 0.00 0.00 0.00 4.46
3342 6261 0.103572 ACATATTTCGTCCGTCCCCG 59.896 55.000 0.00 0.00 0.00 5.73
3343 6262 1.068585 ATATTTCGTCCGTCCCCGC 59.931 57.895 0.00 0.00 0.00 6.13
3344 6263 1.678598 ATATTTCGTCCGTCCCCGCA 61.679 55.000 0.00 0.00 0.00 5.69
3403 6338 2.322999 GATGTCCGTTTCATGCCCGC 62.323 60.000 0.00 0.00 0.00 6.13
3407 6342 2.098298 CGTTTCATGCCCGCTTCG 59.902 61.111 0.00 0.00 0.00 3.79
3416 6351 2.340328 GCCCGCTTCGACCCATTTT 61.340 57.895 0.00 0.00 0.00 1.82
3428 6363 7.170828 GCTTCGACCCATTTTCAGTTTAAATTT 59.829 33.333 0.00 0.00 0.00 1.82
3429 6364 9.685828 CTTCGACCCATTTTCAGTTTAAATTTA 57.314 29.630 0.00 0.00 0.00 1.40
3432 6367 7.062956 CGACCCATTTTCAGTTTAAATTTAGGC 59.937 37.037 0.00 0.00 0.00 3.93
3434 6369 7.877612 ACCCATTTTCAGTTTAAATTTAGGCTG 59.122 33.333 17.76 17.76 0.00 4.85
3435 6370 7.334171 CCCATTTTCAGTTTAAATTTAGGCTGG 59.666 37.037 20.91 11.27 0.00 4.85
3441 6376 6.325286 TCAGTTTAAATTTAGGCTGGGTTTGT 59.675 34.615 20.91 0.00 0.00 2.83
3447 6382 0.109723 TAGGCTGGGTTTGTGTCCAC 59.890 55.000 0.00 0.00 0.00 4.02
3453 6388 1.507141 GGGTTTGTGTCCACGCAGAG 61.507 60.000 0.00 0.00 37.69 3.35
3482 6417 3.083997 GCCCACGACATCCTCCCT 61.084 66.667 0.00 0.00 0.00 4.20
3485 6420 1.450312 CCACGACATCCTCCCTTGC 60.450 63.158 0.00 0.00 0.00 4.01
3489 6424 3.406595 GACATCCTCCCTTGCCCCG 62.407 68.421 0.00 0.00 0.00 5.73
3520 6455 1.340405 GCACACCATCTCCACTTCCAT 60.340 52.381 0.00 0.00 0.00 3.41
3538 6473 3.657727 TCCATCTTTCCTCTCCCAAAACT 59.342 43.478 0.00 0.00 0.00 2.66
3544 6479 0.250513 CCTCTCCCAAAACTCTCCCG 59.749 60.000 0.00 0.00 0.00 5.14
3557 6492 0.178987 TCTCCCGTCCTAGAGCCATC 60.179 60.000 0.00 0.00 0.00 3.51
3559 6494 1.828660 CCCGTCCTAGAGCCATCGT 60.829 63.158 0.00 0.00 0.00 3.73
3632 6582 0.389948 CGAAGAAAGAGGTCACCCCG 60.390 60.000 0.00 0.00 38.74 5.73
3634 6584 0.685660 AAGAAAGAGGTCACCCCGAC 59.314 55.000 0.00 0.00 44.57 4.79
3643 6593 4.803426 CACCCCGACGCAGAGAGC 62.803 72.222 0.00 0.00 40.87 4.09
3694 6644 4.760220 GGGGGAGGGGCAAGGAGA 62.760 72.222 0.00 0.00 0.00 3.71
3695 6645 2.614013 GGGGAGGGGCAAGGAGAA 60.614 66.667 0.00 0.00 0.00 2.87
3696 6646 2.238701 GGGGAGGGGCAAGGAGAAA 61.239 63.158 0.00 0.00 0.00 2.52
3697 6647 1.304617 GGGAGGGGCAAGGAGAAAG 59.695 63.158 0.00 0.00 0.00 2.62
3698 6648 1.208165 GGGAGGGGCAAGGAGAAAGA 61.208 60.000 0.00 0.00 0.00 2.52
3699 6649 0.698818 GGAGGGGCAAGGAGAAAGAA 59.301 55.000 0.00 0.00 0.00 2.52
3700 6650 1.340502 GGAGGGGCAAGGAGAAAGAAG 60.341 57.143 0.00 0.00 0.00 2.85
3701 6651 1.630878 GAGGGGCAAGGAGAAAGAAGA 59.369 52.381 0.00 0.00 0.00 2.87
3702 6652 1.352687 AGGGGCAAGGAGAAAGAAGAC 59.647 52.381 0.00 0.00 0.00 3.01
3703 6653 1.443802 GGGCAAGGAGAAAGAAGACG 58.556 55.000 0.00 0.00 0.00 4.18
3704 6654 1.270893 GGGCAAGGAGAAAGAAGACGT 60.271 52.381 0.00 0.00 0.00 4.34
3705 6655 2.070028 GGCAAGGAGAAAGAAGACGTC 58.930 52.381 7.70 7.70 0.00 4.34
3706 6656 2.548067 GGCAAGGAGAAAGAAGACGTCA 60.548 50.000 19.50 0.00 0.00 4.35
3707 6657 3.330267 GCAAGGAGAAAGAAGACGTCAT 58.670 45.455 19.50 5.41 0.00 3.06
3708 6658 3.369451 GCAAGGAGAAAGAAGACGTCATC 59.631 47.826 19.50 15.98 0.00 2.92
3709 6659 4.560128 CAAGGAGAAAGAAGACGTCATCA 58.440 43.478 21.62 0.00 0.00 3.07
3710 6660 4.181309 AGGAGAAAGAAGACGTCATCAC 57.819 45.455 21.62 12.51 0.00 3.06
3711 6661 3.056465 AGGAGAAAGAAGACGTCATCACC 60.056 47.826 21.62 15.49 0.00 4.02
3712 6662 2.917971 GAGAAAGAAGACGTCATCACCG 59.082 50.000 21.62 0.00 0.00 4.94
3713 6663 2.557056 AGAAAGAAGACGTCATCACCGA 59.443 45.455 21.62 0.00 0.00 4.69
3714 6664 2.638556 AAGAAGACGTCATCACCGAG 57.361 50.000 21.62 0.00 0.00 4.63
3715 6665 0.811915 AGAAGACGTCATCACCGAGG 59.188 55.000 21.62 0.00 0.00 4.63
3716 6666 0.802607 GAAGACGTCATCACCGAGGC 60.803 60.000 19.50 0.00 0.00 4.70
3717 6667 1.251527 AAGACGTCATCACCGAGGCT 61.252 55.000 19.50 0.00 0.00 4.58
3718 6668 1.517257 GACGTCATCACCGAGGCTG 60.517 63.158 11.55 0.00 0.00 4.85
3719 6669 2.214181 GACGTCATCACCGAGGCTGT 62.214 60.000 11.55 0.00 0.00 4.40
3720 6670 1.517257 CGTCATCACCGAGGCTGTC 60.517 63.158 0.00 0.00 0.00 3.51
3721 6671 1.591703 GTCATCACCGAGGCTGTCA 59.408 57.895 0.00 0.00 0.00 3.58
3722 6672 0.737715 GTCATCACCGAGGCTGTCAC 60.738 60.000 0.00 0.00 0.00 3.67
3723 6673 1.448540 CATCACCGAGGCTGTCACC 60.449 63.158 0.00 0.00 0.00 4.02
3724 6674 3.006756 ATCACCGAGGCTGTCACCG 62.007 63.158 0.00 0.00 33.69 4.94
3725 6675 4.742201 CACCGAGGCTGTCACCGG 62.742 72.222 9.75 9.75 46.65 5.28
3728 6678 4.680237 CGAGGCTGTCACCGGCAA 62.680 66.667 0.00 0.00 45.29 4.52
3729 6679 2.743928 GAGGCTGTCACCGGCAAG 60.744 66.667 0.00 0.00 45.29 4.01
3730 6680 4.335647 AGGCTGTCACCGGCAAGG 62.336 66.667 0.00 0.00 45.29 3.61
3752 6702 2.034221 GCAAACCGCCCTTCTCCT 59.966 61.111 0.00 0.00 32.94 3.69
3753 6703 2.335712 GCAAACCGCCCTTCTCCTG 61.336 63.158 0.00 0.00 32.94 3.86
3754 6704 2.034221 AAACCGCCCTTCTCCTGC 59.966 61.111 0.00 0.00 0.00 4.85
3755 6705 2.529744 AAACCGCCCTTCTCCTGCT 61.530 57.895 0.00 0.00 0.00 4.24
3756 6706 1.198759 AAACCGCCCTTCTCCTGCTA 61.199 55.000 0.00 0.00 0.00 3.49
3757 6707 1.617947 AACCGCCCTTCTCCTGCTAG 61.618 60.000 0.00 0.00 0.00 3.42
3758 6708 2.801631 CCGCCCTTCTCCTGCTAGG 61.802 68.421 0.00 0.00 36.46 3.02
3760 6710 4.818314 CCCTTCTCCTGCTAGGGT 57.182 61.111 0.00 0.00 43.07 4.34
3761 6711 3.013682 CCCTTCTCCTGCTAGGGTT 57.986 57.895 0.00 0.00 43.07 4.11
3762 6712 0.833949 CCCTTCTCCTGCTAGGGTTC 59.166 60.000 0.00 0.00 43.07 3.62
3763 6713 0.833949 CCTTCTCCTGCTAGGGTTCC 59.166 60.000 0.00 0.00 35.59 3.62
3764 6714 0.461961 CTTCTCCTGCTAGGGTTCCG 59.538 60.000 0.00 0.00 35.59 4.30
3765 6715 1.614241 TTCTCCTGCTAGGGTTCCGC 61.614 60.000 0.00 0.00 35.59 5.54
3766 6716 3.432051 CTCCTGCTAGGGTTCCGCG 62.432 68.421 0.00 0.00 35.59 6.46
3767 6717 3.458163 CCTGCTAGGGTTCCGCGA 61.458 66.667 8.23 0.00 0.00 5.87
3768 6718 2.105128 CTGCTAGGGTTCCGCGAG 59.895 66.667 8.23 0.00 0.00 5.03
3769 6719 4.143333 TGCTAGGGTTCCGCGAGC 62.143 66.667 8.23 7.31 43.02 5.03
3770 6720 4.893601 GCTAGGGTTCCGCGAGCC 62.894 72.222 8.23 8.03 38.61 4.70
3771 6721 4.570663 CTAGGGTTCCGCGAGCCG 62.571 72.222 8.23 0.00 42.00 5.52
3780 6730 4.856607 CGCGAGCCGACCCTTCTC 62.857 72.222 0.00 0.00 40.02 2.87
3782 6732 3.441290 CGAGCCGACCCTTCTCGT 61.441 66.667 3.06 0.00 43.16 4.18
3783 6733 2.490685 GAGCCGACCCTTCTCGTC 59.509 66.667 0.00 0.00 31.35 4.20
3784 6734 2.282958 AGCCGACCCTTCTCGTCA 60.283 61.111 0.00 0.00 31.35 4.35
3785 6735 2.126031 GCCGACCCTTCTCGTCAC 60.126 66.667 0.00 0.00 31.35 3.67
3786 6736 2.572284 CCGACCCTTCTCGTCACC 59.428 66.667 0.00 0.00 31.35 4.02
3787 6737 2.178521 CGACCCTTCTCGTCACCG 59.821 66.667 0.00 0.00 0.00 4.94
3788 6738 2.126031 GACCCTTCTCGTCACCGC 60.126 66.667 0.00 0.00 0.00 5.68
3789 6739 3.644399 GACCCTTCTCGTCACCGCC 62.644 68.421 0.00 0.00 0.00 6.13
3790 6740 4.796231 CCCTTCTCGTCACCGCCG 62.796 72.222 0.00 0.00 0.00 6.46
3791 6741 4.052229 CCTTCTCGTCACCGCCGT 62.052 66.667 0.00 0.00 0.00 5.68
3792 6742 2.504244 CTTCTCGTCACCGCCGTC 60.504 66.667 0.00 0.00 0.00 4.79
3793 6743 4.394078 TTCTCGTCACCGCCGTCG 62.394 66.667 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.195610 GGTCCACTCCCATTTTCAAATCC 59.804 47.826 0.00 0.00 0.00 3.01
38 39 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
113 114 1.959226 GCACCCGAGCTGACGAAAA 60.959 57.895 0.00 0.00 35.09 2.29
118 119 0.955428 TCATTTGCACCCGAGCTGAC 60.955 55.000 0.00 0.00 34.99 3.51
124 125 1.741401 CGAGCTCATTTGCACCCGA 60.741 57.895 15.40 0.00 34.99 5.14
125 126 2.753966 CCGAGCTCATTTGCACCCG 61.754 63.158 15.40 0.00 34.99 5.28
128 129 1.503542 CACCCGAGCTCATTTGCAC 59.496 57.895 15.40 0.00 34.99 4.57
131 132 0.674581 TCTGCACCCGAGCTCATTTG 60.675 55.000 15.40 7.77 34.99 2.32
133 134 1.220206 CTCTGCACCCGAGCTCATT 59.780 57.895 15.40 0.00 34.99 2.57
144 145 4.153117 AGACGTGAAAATTCATCTCTGCAC 59.847 41.667 0.00 0.00 39.73 4.57
155 156 3.771577 AGGTCCAGAGACGTGAAAATT 57.228 42.857 0.00 0.00 44.54 1.82
162 163 2.037381 GAGGAAAAAGGTCCAGAGACGT 59.963 50.000 0.00 0.00 44.54 4.34
251 253 0.109226 GAGCCGACTAAAGCACGAGT 60.109 55.000 0.00 0.00 0.00 4.18
255 257 0.741221 CAGGGAGCCGACTAAAGCAC 60.741 60.000 0.00 0.00 0.00 4.40
366 368 4.108570 TCCCTGCTTCCAGAAACCTATAA 58.891 43.478 0.00 0.00 41.77 0.98
376 378 1.606531 CCTTCCTCCCTGCTTCCAG 59.393 63.158 0.00 0.00 38.85 3.86
461 463 0.028505 CTATCCGTGTACCGTGGTCG 59.971 60.000 0.00 0.00 33.66 4.79
470 472 2.307768 CCTGCCTCTTCTATCCGTGTA 58.692 52.381 0.00 0.00 0.00 2.90
500 502 3.181530 CGGAACTCGAAACTAATGCTGTG 60.182 47.826 0.00 0.00 42.43 3.66
515 517 0.801067 CGTTCATCGGGTCGGAACTC 60.801 60.000 0.00 0.00 38.94 3.01
597 599 1.135731 GACAGCGAGTCCAGACGAG 59.864 63.158 0.00 0.00 41.56 4.18
598 600 3.264947 GACAGCGAGTCCAGACGA 58.735 61.111 0.00 0.00 41.56 4.20
640 642 1.649271 ATAAGGGCCAAGCTGGGAGG 61.649 60.000 12.85 0.20 38.19 4.30
641 643 0.179006 GATAAGGGCCAAGCTGGGAG 60.179 60.000 12.85 0.00 38.19 4.30
642 644 0.918799 TGATAAGGGCCAAGCTGGGA 60.919 55.000 12.85 0.00 38.19 4.37
643 645 0.466922 CTGATAAGGGCCAAGCTGGG 60.467 60.000 6.18 1.30 38.19 4.45
644 646 1.105759 GCTGATAAGGGCCAAGCTGG 61.106 60.000 6.18 0.00 41.55 4.85
645 647 1.442526 CGCTGATAAGGGCCAAGCTG 61.443 60.000 6.18 1.14 0.00 4.24
646 648 1.153086 CGCTGATAAGGGCCAAGCT 60.153 57.895 6.18 0.00 0.00 3.74
647 649 0.536006 ATCGCTGATAAGGGCCAAGC 60.536 55.000 6.18 5.71 0.00 4.01
648 650 1.233019 CATCGCTGATAAGGGCCAAG 58.767 55.000 6.18 0.00 0.00 3.61
649 651 0.819259 GCATCGCTGATAAGGGCCAA 60.819 55.000 6.18 0.00 0.00 4.52
650 652 1.227943 GCATCGCTGATAAGGGCCA 60.228 57.895 6.18 0.00 0.00 5.36
651 653 1.227943 TGCATCGCTGATAAGGGCC 60.228 57.895 0.00 0.00 0.00 5.80
652 654 1.835483 CGTGCATCGCTGATAAGGGC 61.835 60.000 0.00 0.00 0.00 5.19
653 655 2.229039 CGTGCATCGCTGATAAGGG 58.771 57.895 0.00 0.00 0.00 3.95
663 665 0.247814 GGACATTTGAGCGTGCATCG 60.248 55.000 0.00 0.00 43.12 3.84
664 666 0.804364 TGGACATTTGAGCGTGCATC 59.196 50.000 0.00 0.00 0.00 3.91
665 667 1.402968 GATGGACATTTGAGCGTGCAT 59.597 47.619 0.00 0.00 45.47 3.96
666 668 0.804364 GATGGACATTTGAGCGTGCA 59.196 50.000 0.00 0.00 37.88 4.57
667 669 0.804364 TGATGGACATTTGAGCGTGC 59.196 50.000 0.00 0.00 0.00 5.34
668 670 2.032550 GGATGATGGACATTTGAGCGTG 59.967 50.000 0.00 0.00 39.56 5.34
669 671 2.292267 GGATGATGGACATTTGAGCGT 58.708 47.619 0.00 0.00 39.56 5.07
670 672 1.262417 CGGATGATGGACATTTGAGCG 59.738 52.381 0.00 0.00 39.56 5.03
671 673 1.002033 GCGGATGATGGACATTTGAGC 60.002 52.381 0.00 0.00 39.56 4.26
672 674 1.262417 CGCGGATGATGGACATTTGAG 59.738 52.381 0.00 0.00 39.56 3.02
673 675 1.298602 CGCGGATGATGGACATTTGA 58.701 50.000 0.00 0.00 39.56 2.69
674 676 0.308684 CCGCGGATGATGGACATTTG 59.691 55.000 24.07 0.00 39.56 2.32
675 677 0.180171 TCCGCGGATGATGGACATTT 59.820 50.000 27.28 0.00 39.56 2.32
676 678 0.397941 ATCCGCGGATGATGGACATT 59.602 50.000 38.62 12.68 39.56 2.71
677 679 2.061220 ATCCGCGGATGATGGACAT 58.939 52.632 38.62 13.52 42.47 3.06
678 680 3.549730 ATCCGCGGATGATGGACA 58.450 55.556 38.62 10.21 33.91 4.02
686 688 3.954258 TGATATACATCTCATCCGCGGAT 59.046 43.478 34.60 34.60 31.79 4.18
687 689 3.352648 TGATATACATCTCATCCGCGGA 58.647 45.455 33.12 33.12 31.93 5.54
688 690 3.782889 TGATATACATCTCATCCGCGG 57.217 47.619 22.12 22.12 31.93 6.46
699 701 5.761726 CACCAGCAACAGTGATGATATACAT 59.238 40.000 4.31 0.00 44.17 2.29
700 702 5.118286 CACCAGCAACAGTGATGATATACA 58.882 41.667 4.31 0.00 44.17 2.29
701 703 4.512944 CCACCAGCAACAGTGATGATATAC 59.487 45.833 4.31 0.00 44.17 1.47
702 704 4.164030 ACCACCAGCAACAGTGATGATATA 59.836 41.667 4.31 0.00 44.17 0.86
703 705 3.054139 ACCACCAGCAACAGTGATGATAT 60.054 43.478 4.31 0.00 44.17 1.63
704 706 2.305635 ACCACCAGCAACAGTGATGATA 59.694 45.455 4.31 0.00 44.17 2.15
705 707 1.074405 ACCACCAGCAACAGTGATGAT 59.926 47.619 4.31 0.00 44.17 2.45
706 708 0.473755 ACCACCAGCAACAGTGATGA 59.526 50.000 4.31 0.00 44.17 2.92
707 709 0.594602 CACCACCAGCAACAGTGATG 59.405 55.000 0.00 0.00 40.98 3.07
708 710 0.538057 CCACCACCAGCAACAGTGAT 60.538 55.000 0.00 0.00 36.01 3.06
709 711 1.152984 CCACCACCAGCAACAGTGA 60.153 57.895 0.00 0.00 36.01 3.41
710 712 1.037030 AACCACCACCAGCAACAGTG 61.037 55.000 0.00 0.00 0.00 3.66
711 713 0.324275 AAACCACCACCAGCAACAGT 60.324 50.000 0.00 0.00 0.00 3.55
712 714 0.102844 CAAACCACCACCAGCAACAG 59.897 55.000 0.00 0.00 0.00 3.16
713 715 0.323816 TCAAACCACCACCAGCAACA 60.324 50.000 0.00 0.00 0.00 3.33
714 716 1.039856 ATCAAACCACCACCAGCAAC 58.960 50.000 0.00 0.00 0.00 4.17
715 717 1.786937 AATCAAACCACCACCAGCAA 58.213 45.000 0.00 0.00 0.00 3.91
716 718 2.235016 GTAATCAAACCACCACCAGCA 58.765 47.619 0.00 0.00 0.00 4.41
717 719 1.544246 GGTAATCAAACCACCACCAGC 59.456 52.381 0.00 0.00 39.50 4.85
718 720 2.870175 TGGTAATCAAACCACCACCAG 58.130 47.619 0.00 0.00 44.68 4.00
726 728 4.542735 CCGTGAAAAGTGGTAATCAAACC 58.457 43.478 0.00 0.00 40.19 3.27
727 729 3.978855 GCCGTGAAAAGTGGTAATCAAAC 59.021 43.478 0.00 0.00 0.00 2.93
728 730 3.632604 TGCCGTGAAAAGTGGTAATCAAA 59.367 39.130 0.00 0.00 0.00 2.69
729 731 3.003897 GTGCCGTGAAAAGTGGTAATCAA 59.996 43.478 0.00 0.00 0.00 2.57
730 732 2.550606 GTGCCGTGAAAAGTGGTAATCA 59.449 45.455 0.00 0.00 0.00 2.57
731 733 2.095415 GGTGCCGTGAAAAGTGGTAATC 60.095 50.000 0.00 0.00 0.00 1.75
732 734 1.883926 GGTGCCGTGAAAAGTGGTAAT 59.116 47.619 0.00 0.00 0.00 1.89
733 735 1.310904 GGTGCCGTGAAAAGTGGTAA 58.689 50.000 0.00 0.00 0.00 2.85
734 736 0.180642 TGGTGCCGTGAAAAGTGGTA 59.819 50.000 0.00 0.00 0.00 3.25
735 737 0.467290 ATGGTGCCGTGAAAAGTGGT 60.467 50.000 0.00 0.00 0.00 4.16
736 738 0.240945 GATGGTGCCGTGAAAAGTGG 59.759 55.000 0.00 0.00 0.00 4.00
737 739 0.240945 GGATGGTGCCGTGAAAAGTG 59.759 55.000 0.00 0.00 0.00 3.16
738 740 0.893727 GGGATGGTGCCGTGAAAAGT 60.894 55.000 0.00 0.00 0.00 2.66
739 741 0.893270 TGGGATGGTGCCGTGAAAAG 60.893 55.000 0.00 0.00 0.00 2.27
740 742 0.251564 ATGGGATGGTGCCGTGAAAA 60.252 50.000 0.00 0.00 0.00 2.29
741 743 0.679640 GATGGGATGGTGCCGTGAAA 60.680 55.000 0.00 0.00 0.00 2.69
742 744 1.077787 GATGGGATGGTGCCGTGAA 60.078 57.895 0.00 0.00 0.00 3.18
743 745 2.589540 GATGGGATGGTGCCGTGA 59.410 61.111 0.00 0.00 0.00 4.35
744 746 2.516930 GGATGGGATGGTGCCGTG 60.517 66.667 0.00 0.00 0.00 4.94
745 747 4.175337 CGGATGGGATGGTGCCGT 62.175 66.667 0.00 0.00 37.35 5.68
749 751 1.826340 TATCCGCGGATGGGATGGTG 61.826 60.000 43.28 7.60 43.96 4.17
750 752 0.909610 ATATCCGCGGATGGGATGGT 60.910 55.000 43.28 23.21 43.96 3.55
751 753 0.253044 AATATCCGCGGATGGGATGG 59.747 55.000 43.28 8.96 43.96 3.51
752 754 1.372582 CAATATCCGCGGATGGGATG 58.627 55.000 43.28 31.01 43.96 3.51
753 755 0.253044 CCAATATCCGCGGATGGGAT 59.747 55.000 43.28 29.31 45.94 3.85
754 756 1.676968 CCAATATCCGCGGATGGGA 59.323 57.895 43.28 28.46 38.10 4.37
755 757 1.377202 CCCAATATCCGCGGATGGG 60.377 63.158 43.28 40.48 36.17 4.00
756 758 2.040544 GCCCAATATCCGCGGATGG 61.041 63.158 43.28 36.82 36.17 3.51
757 759 2.390599 CGCCCAATATCCGCGGATG 61.391 63.158 43.28 31.02 42.14 3.51
758 760 2.047274 CGCCCAATATCCGCGGAT 60.047 61.111 39.97 39.97 42.14 4.18
762 764 2.550606 TGAATTAACGCCCAATATCCGC 59.449 45.455 0.00 0.00 0.00 5.54
763 765 5.371115 AATGAATTAACGCCCAATATCCG 57.629 39.130 0.00 0.00 0.00 4.18
764 766 5.242838 TGGAATGAATTAACGCCCAATATCC 59.757 40.000 0.00 0.00 0.00 2.59
765 767 6.016276 AGTGGAATGAATTAACGCCCAATATC 60.016 38.462 0.00 0.00 0.00 1.63
766 768 5.833131 AGTGGAATGAATTAACGCCCAATAT 59.167 36.000 0.00 0.00 0.00 1.28
767 769 5.197451 AGTGGAATGAATTAACGCCCAATA 58.803 37.500 0.00 0.00 0.00 1.90
768 770 4.023291 AGTGGAATGAATTAACGCCCAAT 58.977 39.130 0.00 0.00 0.00 3.16
769 771 3.426615 AGTGGAATGAATTAACGCCCAA 58.573 40.909 0.00 0.00 0.00 4.12
770 772 3.013921 GAGTGGAATGAATTAACGCCCA 58.986 45.455 0.00 0.00 0.00 5.36
771 773 3.013921 TGAGTGGAATGAATTAACGCCC 58.986 45.455 0.00 0.00 0.00 6.13
772 774 3.438781 TGTGAGTGGAATGAATTAACGCC 59.561 43.478 0.00 0.00 0.00 5.68
773 775 4.678509 TGTGAGTGGAATGAATTAACGC 57.321 40.909 0.00 0.00 0.00 4.84
774 776 5.123820 ACCATGTGAGTGGAATGAATTAACG 59.876 40.000 0.00 0.00 42.02 3.18
775 777 6.515272 ACCATGTGAGTGGAATGAATTAAC 57.485 37.500 0.00 0.00 42.02 2.01
776 778 7.537596 AAACCATGTGAGTGGAATGAATTAA 57.462 32.000 0.00 0.00 42.02 1.40
777 779 7.015098 ACAAAACCATGTGAGTGGAATGAATTA 59.985 33.333 0.00 0.00 42.02 1.40
778 780 6.183360 ACAAAACCATGTGAGTGGAATGAATT 60.183 34.615 0.00 0.00 42.02 2.17
779 781 5.305128 ACAAAACCATGTGAGTGGAATGAAT 59.695 36.000 0.00 0.00 42.02 2.57
780 782 4.648762 ACAAAACCATGTGAGTGGAATGAA 59.351 37.500 0.00 0.00 42.02 2.57
781 783 4.214310 ACAAAACCATGTGAGTGGAATGA 58.786 39.130 0.00 0.00 42.02 2.57
782 784 4.549458 GACAAAACCATGTGAGTGGAATG 58.451 43.478 0.00 0.00 42.02 2.67
783 785 3.253188 CGACAAAACCATGTGAGTGGAAT 59.747 43.478 0.00 0.00 42.02 3.01
784 786 2.616376 CGACAAAACCATGTGAGTGGAA 59.384 45.455 0.00 0.00 42.02 3.53
785 787 2.217750 CGACAAAACCATGTGAGTGGA 58.782 47.619 0.00 0.00 42.02 4.02
786 788 1.946768 ACGACAAAACCATGTGAGTGG 59.053 47.619 0.00 0.00 45.04 4.00
787 789 2.286950 CCACGACAAAACCATGTGAGTG 60.287 50.000 0.00 0.61 37.84 3.51
788 790 1.946768 CCACGACAAAACCATGTGAGT 59.053 47.619 0.00 0.00 32.57 3.41
789 791 2.032030 GTCCACGACAAAACCATGTGAG 60.032 50.000 0.00 0.00 32.57 3.51
790 792 1.944024 GTCCACGACAAAACCATGTGA 59.056 47.619 0.00 0.00 32.57 3.58
791 793 1.333702 CGTCCACGACAAAACCATGTG 60.334 52.381 0.00 0.00 43.02 3.21
792 794 0.941542 CGTCCACGACAAAACCATGT 59.058 50.000 0.00 0.00 43.02 3.21
793 795 0.941542 ACGTCCACGACAAAACCATG 59.058 50.000 6.03 0.00 43.02 3.66
794 796 2.137523 GTACGTCCACGACAAAACCAT 58.862 47.619 6.03 0.00 43.02 3.55
795 797 1.569708 GTACGTCCACGACAAAACCA 58.430 50.000 6.03 0.00 43.02 3.67
796 798 0.503961 CGTACGTCCACGACAAAACC 59.496 55.000 7.22 0.00 44.69 3.27
797 799 0.111574 GCGTACGTCCACGACAAAAC 60.112 55.000 17.90 0.00 44.69 2.43
798 800 1.538946 CGCGTACGTCCACGACAAAA 61.539 55.000 17.90 0.00 44.69 2.44
799 801 2.010286 CGCGTACGTCCACGACAAA 61.010 57.895 17.90 0.00 44.69 2.83
800 802 2.186350 ATCGCGTACGTCCACGACAA 62.186 55.000 17.90 0.00 44.69 3.18
801 803 1.357991 TATCGCGTACGTCCACGACA 61.358 55.000 17.90 3.37 44.69 4.35
802 804 0.041839 ATATCGCGTACGTCCACGAC 60.042 55.000 17.90 5.36 44.69 4.34
803 805 0.041926 CATATCGCGTACGTCCACGA 60.042 55.000 17.90 16.82 44.69 4.35
804 806 1.594269 GCATATCGCGTACGTCCACG 61.594 60.000 17.90 11.76 44.71 4.94
805 807 2.130711 GCATATCGCGTACGTCCAC 58.869 57.895 17.90 0.00 41.18 4.02
806 808 4.620437 GCATATCGCGTACGTCCA 57.380 55.556 17.90 1.01 41.18 4.02
815 817 2.094894 CGGATGGAAATCAGCATATCGC 59.905 50.000 0.00 0.00 42.91 4.58
816 818 2.094894 GCGGATGGAAATCAGCATATCG 59.905 50.000 6.05 0.00 40.61 2.92
817 819 2.094894 CGCGGATGGAAATCAGCATATC 59.905 50.000 0.00 0.00 40.88 1.63
818 820 2.079158 CGCGGATGGAAATCAGCATAT 58.921 47.619 0.00 0.00 40.88 1.78
819 821 1.511850 CGCGGATGGAAATCAGCATA 58.488 50.000 0.00 0.00 40.88 3.14
820 822 1.168407 CCGCGGATGGAAATCAGCAT 61.168 55.000 24.07 0.00 40.88 3.79
821 823 1.819208 CCGCGGATGGAAATCAGCA 60.819 57.895 24.07 0.00 40.88 4.41
822 824 2.546494 CCCGCGGATGGAAATCAGC 61.546 63.158 30.73 1.38 38.18 4.26
823 825 0.250467 ATCCCGCGGATGGAAATCAG 60.250 55.000 30.73 5.39 41.43 2.90
824 826 1.836391 ATCCCGCGGATGGAAATCA 59.164 52.632 30.73 0.00 41.43 2.57
825 827 4.800554 ATCCCGCGGATGGAAATC 57.199 55.556 30.73 0.00 41.43 2.17
832 834 4.457949 GGAATTAATTAACATCCCGCGGAT 59.542 41.667 30.73 15.71 44.21 4.18
833 835 3.816523 GGAATTAATTAACATCCCGCGGA 59.183 43.478 30.73 13.82 35.55 5.54
834 836 3.818773 AGGAATTAATTAACATCCCGCGG 59.181 43.478 21.04 21.04 0.00 6.46
835 837 4.083484 GGAGGAATTAATTAACATCCCGCG 60.083 45.833 20.53 0.00 0.00 6.46
836 838 4.825085 TGGAGGAATTAATTAACATCCCGC 59.175 41.667 20.53 15.34 0.00 6.13
837 839 5.473504 CCTGGAGGAATTAATTAACATCCCG 59.526 44.000 20.53 12.86 37.39 5.14
838 840 5.243954 GCCTGGAGGAATTAATTAACATCCC 59.756 44.000 20.53 14.65 37.39 3.85
839 841 6.071320 AGCCTGGAGGAATTAATTAACATCC 58.929 40.000 18.10 18.10 37.39 3.51
840 842 7.001073 AGAGCCTGGAGGAATTAATTAACATC 58.999 38.462 0.00 2.46 37.39 3.06
841 843 6.915786 AGAGCCTGGAGGAATTAATTAACAT 58.084 36.000 0.00 0.00 37.39 2.71
842 844 6.327386 AGAGCCTGGAGGAATTAATTAACA 57.673 37.500 0.00 0.00 37.39 2.41
843 845 7.646548 AAAGAGCCTGGAGGAATTAATTAAC 57.353 36.000 0.00 0.00 37.39 2.01
844 846 7.342026 GGAAAAGAGCCTGGAGGAATTAATTAA 59.658 37.037 0.00 0.00 37.39 1.40
845 847 6.833933 GGAAAAGAGCCTGGAGGAATTAATTA 59.166 38.462 0.00 0.00 37.39 1.40
846 848 5.658634 GGAAAAGAGCCTGGAGGAATTAATT 59.341 40.000 0.00 0.00 37.39 1.40
847 849 5.204292 GGAAAAGAGCCTGGAGGAATTAAT 58.796 41.667 0.00 0.00 37.39 1.40
848 850 4.044065 TGGAAAAGAGCCTGGAGGAATTAA 59.956 41.667 0.00 0.00 37.39 1.40
849 851 3.591527 TGGAAAAGAGCCTGGAGGAATTA 59.408 43.478 0.00 0.00 37.39 1.40
850 852 2.379907 TGGAAAAGAGCCTGGAGGAATT 59.620 45.455 0.00 0.00 37.39 2.17
851 853 1.995542 TGGAAAAGAGCCTGGAGGAAT 59.004 47.619 0.00 0.00 37.39 3.01
852 854 1.444933 TGGAAAAGAGCCTGGAGGAA 58.555 50.000 0.00 0.00 37.39 3.36
853 855 1.283029 CATGGAAAAGAGCCTGGAGGA 59.717 52.381 0.00 0.00 37.39 3.71
854 856 1.684248 CCATGGAAAAGAGCCTGGAGG 60.684 57.143 5.56 0.00 38.53 4.30
855 857 1.760192 CCATGGAAAAGAGCCTGGAG 58.240 55.000 5.56 0.00 0.00 3.86
856 858 0.323725 GCCATGGAAAAGAGCCTGGA 60.324 55.000 18.40 0.00 0.00 3.86
857 859 0.612732 TGCCATGGAAAAGAGCCTGG 60.613 55.000 18.40 0.00 0.00 4.45
858 860 1.481871 ATGCCATGGAAAAGAGCCTG 58.518 50.000 18.40 0.00 0.00 4.85
859 861 2.242882 AATGCCATGGAAAAGAGCCT 57.757 45.000 18.40 0.00 0.00 4.58
860 862 3.339253 AAAATGCCATGGAAAAGAGCC 57.661 42.857 18.40 0.00 0.00 4.70
861 863 4.067192 ACAAAAATGCCATGGAAAAGAGC 58.933 39.130 18.40 0.00 0.00 4.09
862 864 5.178067 GTGACAAAAATGCCATGGAAAAGAG 59.822 40.000 18.40 1.18 0.00 2.85
863 865 5.055812 GTGACAAAAATGCCATGGAAAAGA 58.944 37.500 18.40 0.00 0.00 2.52
864 866 5.049954 CAGTGACAAAAATGCCATGGAAAAG 60.050 40.000 18.40 0.00 0.00 2.27
865 867 4.815308 CAGTGACAAAAATGCCATGGAAAA 59.185 37.500 18.40 0.00 0.00 2.29
866 868 4.378774 CAGTGACAAAAATGCCATGGAAA 58.621 39.130 18.40 2.28 0.00 3.13
867 869 3.803021 GCAGTGACAAAAATGCCATGGAA 60.803 43.478 18.40 4.87 32.49 3.53
868 870 2.288948 GCAGTGACAAAAATGCCATGGA 60.289 45.455 18.40 0.31 32.49 3.41
869 871 2.070783 GCAGTGACAAAAATGCCATGG 58.929 47.619 7.63 7.63 32.49 3.66
870 872 2.734606 CTGCAGTGACAAAAATGCCATG 59.265 45.455 5.25 0.00 37.89 3.66
871 873 2.629137 TCTGCAGTGACAAAAATGCCAT 59.371 40.909 14.67 0.00 37.89 4.40
872 874 2.030371 TCTGCAGTGACAAAAATGCCA 58.970 42.857 14.67 0.00 37.89 4.92
873 875 2.035066 ACTCTGCAGTGACAAAAATGCC 59.965 45.455 21.96 0.00 37.89 4.40
874 876 3.360249 ACTCTGCAGTGACAAAAATGC 57.640 42.857 21.96 0.00 39.14 3.56
875 877 6.441274 ACATAACTCTGCAGTGACAAAAATG 58.559 36.000 21.96 15.26 31.06 2.32
876 878 6.639632 ACATAACTCTGCAGTGACAAAAAT 57.360 33.333 21.96 3.78 31.06 1.82
877 879 6.449635 AACATAACTCTGCAGTGACAAAAA 57.550 33.333 21.96 0.00 31.06 1.94
878 880 6.094742 TCAAACATAACTCTGCAGTGACAAAA 59.905 34.615 21.96 0.00 31.06 2.44
879 881 5.588246 TCAAACATAACTCTGCAGTGACAAA 59.412 36.000 21.96 4.95 31.06 2.83
880 882 5.122519 TCAAACATAACTCTGCAGTGACAA 58.877 37.500 21.96 7.26 31.06 3.18
881 883 4.702831 TCAAACATAACTCTGCAGTGACA 58.297 39.130 21.96 9.29 31.06 3.58
882 884 5.673337 TTCAAACATAACTCTGCAGTGAC 57.327 39.130 21.96 0.00 31.06 3.67
883 885 6.691754 TTTTCAAACATAACTCTGCAGTGA 57.308 33.333 21.96 8.19 31.06 3.41
908 910 5.841957 AGAACTCTGCAGTGACAATTTTT 57.158 34.783 21.96 4.17 31.06 1.94
909 911 5.126061 ACAAGAACTCTGCAGTGACAATTTT 59.874 36.000 21.96 4.88 31.06 1.82
910 912 4.641989 ACAAGAACTCTGCAGTGACAATTT 59.358 37.500 21.96 5.59 31.06 1.82
911 913 4.036027 CACAAGAACTCTGCAGTGACAATT 59.964 41.667 21.96 5.96 31.06 2.32
912 914 3.562973 CACAAGAACTCTGCAGTGACAAT 59.437 43.478 21.96 5.47 31.06 2.71
913 915 2.938451 CACAAGAACTCTGCAGTGACAA 59.062 45.455 21.96 0.00 31.06 3.18
914 916 2.554142 CACAAGAACTCTGCAGTGACA 58.446 47.619 21.96 0.00 31.06 3.58
915 917 1.262683 GCACAAGAACTCTGCAGTGAC 59.737 52.381 21.96 14.30 31.06 3.67
916 918 1.139654 AGCACAAGAACTCTGCAGTGA 59.860 47.619 21.96 0.00 33.06 3.41
917 919 1.590932 AGCACAAGAACTCTGCAGTG 58.409 50.000 14.67 14.35 33.06 3.66
918 920 2.338577 AAGCACAAGAACTCTGCAGT 57.661 45.000 14.67 0.00 33.06 4.40
919 921 3.657634 TCTAAGCACAAGAACTCTGCAG 58.342 45.455 7.63 7.63 33.06 4.41
920 922 3.657634 CTCTAAGCACAAGAACTCTGCA 58.342 45.455 0.00 0.00 33.06 4.41
921 923 2.414825 GCTCTAAGCACAAGAACTCTGC 59.585 50.000 0.00 0.00 41.89 4.26
949 951 0.545071 CCTGGCCCTCCATGGTTTTT 60.545 55.000 12.58 0.00 42.51 1.94
950 952 1.079073 CCTGGCCCTCCATGGTTTT 59.921 57.895 12.58 0.00 42.51 2.43
951 953 2.772924 CCTGGCCCTCCATGGTTT 59.227 61.111 12.58 0.00 42.51 3.27
952 954 4.066139 GCCTGGCCCTCCATGGTT 62.066 66.667 12.58 0.00 42.51 3.67
969 971 0.866906 CAATAATGCGTTGCCCTGCG 60.867 55.000 0.08 0.00 0.00 5.18
970 972 1.147557 GCAATAATGCGTTGCCCTGC 61.148 55.000 0.08 1.21 44.65 4.85
971 973 2.962089 GCAATAATGCGTTGCCCTG 58.038 52.632 0.08 0.00 44.65 4.45
981 983 6.025749 TCCATCTCCGTACTAGCAATAATG 57.974 41.667 0.00 0.00 0.00 1.90
982 984 6.267928 ACTTCCATCTCCGTACTAGCAATAAT 59.732 38.462 0.00 0.00 0.00 1.28
983 985 5.597182 ACTTCCATCTCCGTACTAGCAATAA 59.403 40.000 0.00 0.00 0.00 1.40
984 986 5.138276 ACTTCCATCTCCGTACTAGCAATA 58.862 41.667 0.00 0.00 0.00 1.90
985 987 3.961408 ACTTCCATCTCCGTACTAGCAAT 59.039 43.478 0.00 0.00 0.00 3.56
986 988 3.362706 ACTTCCATCTCCGTACTAGCAA 58.637 45.455 0.00 0.00 0.00 3.91
987 989 2.950309 GACTTCCATCTCCGTACTAGCA 59.050 50.000 0.00 0.00 0.00 3.49
988 990 2.031857 CGACTTCCATCTCCGTACTAGC 60.032 54.545 0.00 0.00 0.00 3.42
989 991 2.548904 CCGACTTCCATCTCCGTACTAG 59.451 54.545 0.00 0.00 0.00 2.57
990 992 2.569059 CCGACTTCCATCTCCGTACTA 58.431 52.381 0.00 0.00 0.00 1.82
991 993 1.390565 CCGACTTCCATCTCCGTACT 58.609 55.000 0.00 0.00 0.00 2.73
992 994 0.384669 CCCGACTTCCATCTCCGTAC 59.615 60.000 0.00 0.00 0.00 3.67
993 995 0.754217 CCCCGACTTCCATCTCCGTA 60.754 60.000 0.00 0.00 0.00 4.02
994 996 2.058595 CCCCGACTTCCATCTCCGT 61.059 63.158 0.00 0.00 0.00 4.69
995 997 2.815308 CCCCGACTTCCATCTCCG 59.185 66.667 0.00 0.00 0.00 4.63
996 998 1.910580 TTGCCCCGACTTCCATCTCC 61.911 60.000 0.00 0.00 0.00 3.71
997 999 0.035439 TTTGCCCCGACTTCCATCTC 60.035 55.000 0.00 0.00 0.00 2.75
998 1000 0.322546 GTTTGCCCCGACTTCCATCT 60.323 55.000 0.00 0.00 0.00 2.90
999 1001 1.313091 GGTTTGCCCCGACTTCCATC 61.313 60.000 0.00 0.00 0.00 3.51
1000 1002 1.304134 GGTTTGCCCCGACTTCCAT 60.304 57.895 0.00 0.00 0.00 3.41
1001 1003 2.114411 GGTTTGCCCCGACTTCCA 59.886 61.111 0.00 0.00 0.00 3.53
1002 1004 1.971695 CAGGTTTGCCCCGACTTCC 60.972 63.158 0.00 0.00 34.57 3.46
1003 1005 1.971695 CCAGGTTTGCCCCGACTTC 60.972 63.158 0.00 0.00 34.57 3.01
1004 1006 2.115266 CCAGGTTTGCCCCGACTT 59.885 61.111 0.00 0.00 34.57 3.01
1005 1007 2.852075 TCCAGGTTTGCCCCGACT 60.852 61.111 0.00 0.00 34.57 4.18
1006 1008 2.671963 GTCCAGGTTTGCCCCGAC 60.672 66.667 0.00 0.00 34.57 4.79
1007 1009 3.961414 GGTCCAGGTTTGCCCCGA 61.961 66.667 0.00 0.00 34.57 5.14
1010 1012 3.961414 TCGGGTCCAGGTTTGCCC 61.961 66.667 0.00 0.00 37.79 5.36
1011 1013 2.671963 GTCGGGTCCAGGTTTGCC 60.672 66.667 0.00 0.00 0.00 4.52
1012 1014 2.671963 GGTCGGGTCCAGGTTTGC 60.672 66.667 0.00 0.00 0.00 3.68
1013 1015 2.033602 GGGTCGGGTCCAGGTTTG 59.966 66.667 0.00 0.00 0.00 2.93
1014 1016 3.254617 GGGGTCGGGTCCAGGTTT 61.255 66.667 0.00 0.00 0.00 3.27
1176 1180 2.513897 GATGGGAAAGACGGCGGG 60.514 66.667 13.24 0.00 0.00 6.13
1178 1182 0.179073 ATCTGATGGGAAAGACGGCG 60.179 55.000 4.80 4.80 0.00 6.46
1179 1183 1.139853 AGATCTGATGGGAAAGACGGC 59.860 52.381 0.00 0.00 0.00 5.68
1180 1184 2.484417 CCAGATCTGATGGGAAAGACGG 60.484 54.545 24.62 0.00 33.94 4.79
1187 1191 1.637338 CCGATCCAGATCTGATGGGA 58.363 55.000 24.62 13.02 38.44 4.37
1191 1195 1.148867 AGGTCCCGATCCAGATCTGAT 59.851 52.381 24.62 14.77 35.72 2.90
1233 1237 4.643387 GCTGGGCAGTCCGGTGTT 62.643 66.667 0.00 0.00 43.94 3.32
1328 1589 3.286751 GGTTGTCGGCAGCAGCAA 61.287 61.111 6.12 0.00 44.61 3.91
1402 2779 3.219928 GGGGAGCGAGCTCGATGA 61.220 66.667 38.74 0.00 43.59 2.92
1494 3090 4.467084 GCCGGGTCCGATCTGCAA 62.467 66.667 11.39 0.00 42.83 4.08
1634 3230 4.218578 AGCGATCGCCTCCAGCAG 62.219 66.667 34.89 0.00 44.04 4.24
1717 3313 1.173444 AGCTCACACTCGAGAACGGT 61.173 55.000 21.68 8.63 40.21 4.83
1994 4642 2.969238 CGGTGGATGCAGGCGATC 60.969 66.667 0.00 0.00 0.00 3.69
2118 4766 0.098025 CCAAAACACTGTTGACGCGT 59.902 50.000 13.85 13.85 0.00 6.01
2121 4769 1.333619 CTCCCCAAAACACTGTTGACG 59.666 52.381 0.00 0.00 0.00 4.35
2159 4807 0.034896 CGGCACCACCTCTAGTTTGT 59.965 55.000 0.00 0.00 35.61 2.83
2241 4890 0.036010 CGACAGAGCCAACCTGGATT 60.036 55.000 0.00 0.00 35.51 3.01
2295 4944 2.693762 CCGACAAGCTGTGGCATGG 61.694 63.158 0.00 0.00 40.91 3.66
2301 4950 2.639286 GGCAACCGACAAGCTGTG 59.361 61.111 0.00 0.00 0.00 3.66
2334 4983 3.898123 TGACTTCACTCCTAGAAGCAACT 59.102 43.478 0.00 0.00 44.87 3.16
2634 5290 1.302033 CGCCTCAGAAACAGGTGCT 60.302 57.895 0.00 0.00 34.78 4.40
2661 5317 1.278127 TCAAAGATGGAAGACCGGACC 59.722 52.381 9.46 6.63 39.42 4.46
2671 5327 1.278985 AGCGTCATGGTCAAAGATGGA 59.721 47.619 0.00 0.00 0.00 3.41
2720 5376 2.335011 GGCCAAGCTTTTTCGCGT 59.665 55.556 5.77 0.00 34.40 6.01
2801 5457 0.693049 GCCTGAAGAAACCTCCTCCA 59.307 55.000 0.00 0.00 0.00 3.86
2886 5557 1.521457 CTCCATTAAGCAGCCGCGA 60.521 57.895 8.23 0.00 45.49 5.87
3040 5726 3.606886 GTGACACCACGATCAACCT 57.393 52.632 0.00 0.00 33.10 3.50
3058 5744 3.576648 ACTCGCTAAGAAAGAAACTCCG 58.423 45.455 0.00 0.00 0.00 4.63
3168 6049 3.056393 TCGAAACGGAGGCAGAAGATTTA 60.056 43.478 0.00 0.00 0.00 1.40
3209 6128 2.158475 TGAATCCCCAGAACAGCAGTTT 60.158 45.455 0.00 0.00 38.30 2.66
3216 6135 2.449464 CATGCTTGAATCCCCAGAACA 58.551 47.619 0.00 0.00 0.00 3.18
3224 6143 2.166870 TGAACATGGCATGCTTGAATCC 59.833 45.455 26.70 8.81 0.00 3.01
3232 6151 2.340337 GGTCTTTTGAACATGGCATGC 58.660 47.619 26.70 9.90 35.86 4.06
3281 6200 3.747976 GCACCGAGCGGGCATTTT 61.748 61.111 14.07 0.00 40.62 1.82
3290 6209 3.795488 GCCTTATATTTTTGGCACCGAGC 60.795 47.826 0.00 0.00 44.34 5.03
3297 6216 7.267857 AGATGAAGTTGCCTTATATTTTTGGC 58.732 34.615 0.00 0.00 45.10 4.52
3309 6228 6.349300 ACGAAATATGTAGATGAAGTTGCCT 58.651 36.000 0.00 0.00 0.00 4.75
3320 6239 2.624838 GGGGACGGACGAAATATGTAGA 59.375 50.000 0.00 0.00 0.00 2.59
3366 6301 1.700523 TCCGTCCATTTACGTCAACG 58.299 50.000 0.00 0.12 41.27 4.10
3368 6303 3.255725 GACATCCGTCCATTTACGTCAA 58.744 45.455 0.00 0.00 41.27 3.18
3387 6322 2.253414 GAAGCGGGCATGAAACGGAC 62.253 60.000 0.00 0.00 0.00 4.79
3403 6338 8.587952 AAATTTAAACTGAAAATGGGTCGAAG 57.412 30.769 0.00 0.00 0.00 3.79
3407 6342 8.094548 AGCCTAAATTTAAACTGAAAATGGGTC 58.905 33.333 0.00 0.00 0.00 4.46
3416 6351 6.325286 ACAAACCCAGCCTAAATTTAAACTGA 59.675 34.615 20.78 0.00 0.00 3.41
3428 6363 0.109723 GTGGACACAAACCCAGCCTA 59.890 55.000 0.00 0.00 32.28 3.93
3429 6364 1.152756 GTGGACACAAACCCAGCCT 60.153 57.895 0.00 0.00 32.28 4.58
3432 6367 1.785041 CTGCGTGGACACAAACCCAG 61.785 60.000 3.12 0.00 32.28 4.45
3434 6369 1.507141 CTCTGCGTGGACACAAACCC 61.507 60.000 3.12 0.00 0.00 4.11
3435 6370 0.531974 TCTCTGCGTGGACACAAACC 60.532 55.000 3.12 0.00 0.00 3.27
3441 6376 4.357947 GGCGTCTCTGCGTGGACA 62.358 66.667 0.00 0.00 35.06 4.02
3461 6396 3.718210 GAGGATGTCGTGGGCGTCC 62.718 68.421 0.00 0.00 41.20 4.79
3462 6397 2.202756 GAGGATGTCGTGGGCGTC 60.203 66.667 0.00 0.00 39.49 5.19
3465 6400 2.670148 AAGGGAGGATGTCGTGGGC 61.670 63.158 0.00 0.00 0.00 5.36
3474 6409 3.090532 GACGGGGCAAGGGAGGAT 61.091 66.667 0.00 0.00 0.00 3.24
3511 6446 2.092699 GGGAGAGGAAAGATGGAAGTGG 60.093 54.545 0.00 0.00 0.00 4.00
3514 6449 4.307032 TTTGGGAGAGGAAAGATGGAAG 57.693 45.455 0.00 0.00 0.00 3.46
3520 6455 3.328050 GGAGAGTTTTGGGAGAGGAAAGA 59.672 47.826 0.00 0.00 0.00 2.52
3538 6473 0.178987 GATGGCTCTAGGACGGGAGA 60.179 60.000 0.00 0.00 0.00 3.71
3544 6479 0.308376 GTCGACGATGGCTCTAGGAC 59.692 60.000 0.00 0.00 0.00 3.85
3605 6555 4.211584 GTGACCTCTTTCTTCGGTTTCTTC 59.788 45.833 0.00 0.00 0.00 2.87
3643 6593 3.479269 GCTTTGACGTCTCGCCCG 61.479 66.667 17.92 0.68 0.00 6.13
3645 6595 2.430244 TCGCTTTGACGTCTCGCC 60.430 61.111 17.92 2.14 0.00 5.54
3646 6596 3.060663 GCTCGCTTTGACGTCTCGC 62.061 63.158 17.92 14.55 0.00 5.03
3647 6597 2.437343 GGCTCGCTTTGACGTCTCG 61.437 63.158 17.92 14.15 0.00 4.04
3681 6631 1.630878 TCTTCTTTCTCCTTGCCCCTC 59.369 52.381 0.00 0.00 0.00 4.30
3682 6632 1.352687 GTCTTCTTTCTCCTTGCCCCT 59.647 52.381 0.00 0.00 0.00 4.79
3683 6633 1.827681 GTCTTCTTTCTCCTTGCCCC 58.172 55.000 0.00 0.00 0.00 5.80
3686 6636 2.755650 TGACGTCTTCTTTCTCCTTGC 58.244 47.619 17.92 0.00 0.00 4.01
3687 6637 4.387256 GTGATGACGTCTTCTTTCTCCTTG 59.613 45.833 26.11 0.00 0.00 3.61
3688 6638 4.561105 GTGATGACGTCTTCTTTCTCCTT 58.439 43.478 26.11 0.00 0.00 3.36
3689 6639 3.056465 GGTGATGACGTCTTCTTTCTCCT 60.056 47.826 26.11 0.00 0.00 3.69
3690 6640 3.254892 GGTGATGACGTCTTCTTTCTCC 58.745 50.000 26.11 17.58 0.00 3.71
3691 6641 2.917971 CGGTGATGACGTCTTCTTTCTC 59.082 50.000 26.11 13.99 0.00 2.87
3692 6642 2.557056 TCGGTGATGACGTCTTCTTTCT 59.443 45.455 26.11 1.14 0.00 2.52
3693 6643 2.917971 CTCGGTGATGACGTCTTCTTTC 59.082 50.000 26.11 17.65 0.00 2.62
3694 6644 2.352814 CCTCGGTGATGACGTCTTCTTT 60.353 50.000 26.11 4.49 0.00 2.52
3695 6645 1.202582 CCTCGGTGATGACGTCTTCTT 59.797 52.381 26.11 6.77 0.00 2.52
3696 6646 0.811915 CCTCGGTGATGACGTCTTCT 59.188 55.000 26.11 8.93 0.00 2.85
3697 6647 0.802607 GCCTCGGTGATGACGTCTTC 60.803 60.000 21.20 21.20 0.00 2.87
3698 6648 1.215647 GCCTCGGTGATGACGTCTT 59.784 57.895 17.92 10.81 0.00 3.01
3699 6649 1.679305 AGCCTCGGTGATGACGTCT 60.679 57.895 17.92 1.84 0.00 4.18
3700 6650 1.517257 CAGCCTCGGTGATGACGTC 60.517 63.158 9.11 9.11 32.22 4.34
3701 6651 2.214181 GACAGCCTCGGTGATGACGT 62.214 60.000 0.00 0.00 34.87 4.34
3702 6652 1.517257 GACAGCCTCGGTGATGACG 60.517 63.158 0.00 0.00 34.87 4.35
3703 6653 0.737715 GTGACAGCCTCGGTGATGAC 60.738 60.000 0.00 0.00 34.87 3.06
3704 6654 1.591703 GTGACAGCCTCGGTGATGA 59.408 57.895 0.00 0.00 34.87 2.92
3705 6655 1.448540 GGTGACAGCCTCGGTGATG 60.449 63.158 0.00 0.00 34.87 3.07
3706 6656 2.982130 GGTGACAGCCTCGGTGAT 59.018 61.111 0.00 0.00 34.87 3.06
3707 6657 3.680786 CGGTGACAGCCTCGGTGA 61.681 66.667 0.00 0.00 34.87 4.02
3708 6658 4.742201 CCGGTGACAGCCTCGGTG 62.742 72.222 0.00 0.00 37.92 4.94
3711 6661 4.680237 TTGCCGGTGACAGCCTCG 62.680 66.667 1.90 0.00 0.00 4.63
3712 6662 2.743928 CTTGCCGGTGACAGCCTC 60.744 66.667 1.90 0.00 0.00 4.70
3713 6663 4.335647 CCTTGCCGGTGACAGCCT 62.336 66.667 1.90 0.00 0.00 4.58
3735 6685 2.034221 AGGAGAAGGGCGGTTTGC 59.966 61.111 0.00 0.00 45.38 3.68
3736 6686 2.335712 GCAGGAGAAGGGCGGTTTG 61.336 63.158 0.00 0.00 0.00 2.93
3737 6687 1.198759 TAGCAGGAGAAGGGCGGTTT 61.199 55.000 0.00 0.00 0.00 3.27
3738 6688 1.612442 TAGCAGGAGAAGGGCGGTT 60.612 57.895 0.00 0.00 0.00 4.44
3739 6689 2.038975 TAGCAGGAGAAGGGCGGT 59.961 61.111 0.00 0.00 0.00 5.68
3740 6690 2.801631 CCTAGCAGGAGAAGGGCGG 61.802 68.421 0.00 0.00 37.67 6.13
3741 6691 2.801631 CCCTAGCAGGAGAAGGGCG 61.802 68.421 4.00 0.00 43.47 6.13
3742 6692 3.235369 CCCTAGCAGGAGAAGGGC 58.765 66.667 4.00 0.00 43.47 5.19
3744 6694 0.833949 GGAACCCTAGCAGGAGAAGG 59.166 60.000 4.00 0.00 37.67 3.46
3745 6695 0.461961 CGGAACCCTAGCAGGAGAAG 59.538 60.000 4.00 0.00 37.67 2.85
3746 6696 1.614241 GCGGAACCCTAGCAGGAGAA 61.614 60.000 4.00 0.00 37.67 2.87
3747 6697 2.058595 GCGGAACCCTAGCAGGAGA 61.059 63.158 4.00 0.00 37.67 3.71
3748 6698 2.501610 GCGGAACCCTAGCAGGAG 59.498 66.667 4.00 0.00 37.67 3.69
3749 6699 3.458163 CGCGGAACCCTAGCAGGA 61.458 66.667 0.00 0.00 37.67 3.86
3750 6700 3.432051 CTCGCGGAACCCTAGCAGG 62.432 68.421 6.13 0.00 34.30 4.85
3751 6701 2.105128 CTCGCGGAACCCTAGCAG 59.895 66.667 6.13 0.00 0.00 4.24
3752 6702 4.143333 GCTCGCGGAACCCTAGCA 62.143 66.667 6.13 0.00 33.38 3.49
3753 6703 4.893601 GGCTCGCGGAACCCTAGC 62.894 72.222 6.13 5.59 0.00 3.42
3754 6704 4.570663 CGGCTCGCGGAACCCTAG 62.571 72.222 6.13 0.00 0.00 3.02
3763 6713 4.856607 GAGAAGGGTCGGCTCGCG 62.857 72.222 0.00 0.00 0.00 5.87
3764 6714 4.856607 CGAGAAGGGTCGGCTCGC 62.857 72.222 0.00 0.00 43.88 5.03
3766 6716 2.490685 GACGAGAAGGGTCGGCTC 59.509 66.667 0.00 0.00 45.08 4.70
3769 6719 2.572284 GGTGACGAGAAGGGTCGG 59.428 66.667 0.00 0.00 44.53 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.