Multiple sequence alignment - TraesCS5D01G401300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G401300 chr5D 100.000 3439 0 0 1 3439 466571660 466568222 0.000000e+00 6351.0
1 TraesCS5D01G401300 chr5D 90.000 60 4 2 3379 3437 530374317 530374375 3.680000e-10 76.8
2 TraesCS5D01G401300 chr5D 90.244 41 3 1 626 666 482889468 482889429 6.000000e-03 52.8
3 TraesCS5D01G401300 chr5A 92.128 2744 121 45 616 3291 586670322 586667606 0.000000e+00 3783.0
4 TraesCS5D01G401300 chr5A 89.277 401 24 9 223 620 586670674 586670290 5.160000e-133 484.0
5 TraesCS5D01G401300 chr5A 91.403 221 17 2 1 221 586673354 586673136 5.580000e-78 302.0
6 TraesCS5D01G401300 chr5A 92.053 151 12 0 38 188 16573484 16573334 2.690000e-51 213.0
7 TraesCS5D01G401300 chr5A 97.030 101 3 0 3158 3258 586666351 586666251 1.640000e-38 171.0
8 TraesCS5D01G401300 chr5A 90.741 54 5 0 3386 3439 69067381 69067328 4.760000e-09 73.1
9 TraesCS5D01G401300 chr5B 91.105 1945 84 39 1397 3291 573408697 573406792 0.000000e+00 2551.0
10 TraesCS5D01G401300 chr5B 90.794 630 40 11 625 1240 573409339 573408714 0.000000e+00 826.0
11 TraesCS5D01G401300 chr5B 90.476 42 1 3 626 666 696337376 696337337 6.000000e-03 52.8
12 TraesCS5D01G401300 chr7B 92.053 151 12 0 38 188 699233042 699233192 2.690000e-51 213.0
13 TraesCS5D01G401300 chr4D 92.053 151 12 0 38 188 123472547 123472697 2.690000e-51 213.0
14 TraesCS5D01G401300 chr4D 92.053 151 12 0 38 188 451007615 451007765 2.690000e-51 213.0
15 TraesCS5D01G401300 chr4D 89.076 119 11 2 194 311 123690656 123690773 2.770000e-31 147.0
16 TraesCS5D01G401300 chr4D 89.076 119 11 2 194 311 241055373 241055490 2.770000e-31 147.0
17 TraesCS5D01G401300 chr3A 92.053 151 12 0 38 188 247675213 247675363 2.690000e-51 213.0
18 TraesCS5D01G401300 chr3A 73.094 446 85 28 1929 2358 32100643 32100217 3.600000e-25 126.0
19 TraesCS5D01G401300 chr3A 97.872 47 1 0 3393 3439 662405992 662405946 7.910000e-12 82.4
20 TraesCS5D01G401300 chr3A 97.826 46 1 0 3350 3395 714402322 714402277 2.850000e-11 80.5
21 TraesCS5D01G401300 chr3A 92.453 53 3 1 3342 3394 565329593 565329644 1.320000e-09 75.0
22 TraesCS5D01G401300 chr3A 96.875 32 0 1 626 657 621885153 621885123 6.000000e-03 52.8
23 TraesCS5D01G401300 chr1A 92.053 151 12 0 38 188 238105313 238105163 2.690000e-51 213.0
24 TraesCS5D01G401300 chr1A 92.308 52 2 2 3343 3392 402209974 402210025 4.760000e-09 73.1
25 TraesCS5D01G401300 chrUn 91.391 151 13 0 38 188 182471976 182471826 1.250000e-49 207.0
26 TraesCS5D01G401300 chrUn 91.391 151 13 0 38 188 237097734 237097584 1.250000e-49 207.0
27 TraesCS5D01G401300 chrUn 89.076 119 11 2 194 311 257945806 257945923 2.770000e-31 147.0
28 TraesCS5D01G401300 chr7D 89.076 119 11 2 194 311 578992440 578992557 2.770000e-31 147.0
29 TraesCS5D01G401300 chr7D 95.833 48 2 0 3392 3439 571252899 571252852 1.020000e-10 78.7
30 TraesCS5D01G401300 chr6D 89.076 119 11 2 194 311 283189107 283189224 2.770000e-31 147.0
31 TraesCS5D01G401300 chr6D 97.872 47 1 0 3393 3439 160218384 160218430 7.910000e-12 82.4
32 TraesCS5D01G401300 chr6D 92.683 41 2 1 626 666 306143588 306143549 1.330000e-04 58.4
33 TraesCS5D01G401300 chr1D 89.076 119 11 2 194 311 212430563 212430680 2.770000e-31 147.0
34 TraesCS5D01G401300 chr2D 87.402 127 14 2 189 314 200956437 200956312 9.950000e-31 145.0
35 TraesCS5D01G401300 chr2D 78.788 99 21 0 1864 1962 621635088 621635186 2.210000e-07 67.6
36 TraesCS5D01G401300 chr1B 87.402 127 14 2 189 314 491510880 491510755 9.950000e-31 145.0
37 TraesCS5D01G401300 chr3B 75.709 247 43 15 2116 2358 39580966 39580733 1.310000e-19 108.0
38 TraesCS5D01G401300 chr3B 96.226 53 2 0 3343 3395 670170629 670170577 1.700000e-13 87.9
39 TraesCS5D01G401300 chr6B 100.000 44 0 0 3351 3394 486055383 486055426 7.910000e-12 82.4
40 TraesCS5D01G401300 chr6B 100.000 42 0 0 3353 3394 486054909 486054950 1.020000e-10 78.7
41 TraesCS5D01G401300 chr6B 91.379 58 4 1 3383 3439 658280857 658280800 1.020000e-10 78.7
42 TraesCS5D01G401300 chr6B 92.683 41 2 1 626 666 519399583 519399544 1.330000e-04 58.4
43 TraesCS5D01G401300 chr6A 96.000 50 1 1 3350 3398 112264220 112264269 2.850000e-11 80.5
44 TraesCS5D01G401300 chr6A 90.741 54 3 1 3342 3395 60389111 60389060 1.710000e-08 71.3
45 TraesCS5D01G401300 chr6A 96.970 33 0 1 626 658 441520017 441519986 2.000000e-03 54.7
46 TraesCS5D01G401300 chr6A 100.000 28 0 0 626 653 441484386 441484413 6.000000e-03 52.8
47 TraesCS5D01G401300 chr2A 96.000 50 1 1 3391 3439 39314849 39314898 2.850000e-11 80.5
48 TraesCS5D01G401300 chr2A 78.788 99 21 0 1864 1962 753420056 753420154 2.210000e-07 67.6
49 TraesCS5D01G401300 chr3D 92.727 55 3 1 3385 3439 57324775 57324722 1.020000e-10 78.7
50 TraesCS5D01G401300 chr3D 95.000 40 2 0 3400 3439 331662625 331662586 2.870000e-06 63.9
51 TraesCS5D01G401300 chr2B 92.453 53 2 1 3343 3395 622903799 622903849 1.320000e-09 75.0
52 TraesCS5D01G401300 chr2B 78.182 110 24 0 1853 1962 763474732 763474841 1.710000e-08 71.3
53 TraesCS5D01G401300 chr7A 94.595 37 0 2 626 662 581848352 581848386 4.790000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G401300 chr5D 466568222 466571660 3438 True 6351.0 6351 100.0000 1 3439 1 chr5D.!!$R1 3438
1 TraesCS5D01G401300 chr5A 586666251 586673354 7103 True 1185.0 3783 92.4595 1 3291 4 chr5A.!!$R3 3290
2 TraesCS5D01G401300 chr5B 573406792 573409339 2547 True 1688.5 2551 90.9495 625 3291 2 chr5B.!!$R2 2666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 3250 0.234106 CAGTAGCGTGCATGCATAGC 59.766 55.0 31.13 31.13 37.31 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 5211 0.522705 ATCACACGCAGCTACGTACG 60.523 55.0 12.49 15.01 46.34 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.276868 GCGATCAATGCGTAGTCTAACAATT 60.277 40.000 0.00 0.00 0.00 2.32
100 101 2.396590 TGCTTGTTACGAGGGGAATC 57.603 50.000 1.40 0.00 0.00 2.52
104 105 3.703420 CTTGTTACGAGGGGAATCTACG 58.297 50.000 0.00 0.00 0.00 3.51
113 114 4.202080 CGAGGGGAATCTACGTGTTATTCA 60.202 45.833 16.30 0.00 32.42 2.57
125 126 8.281194 TCTACGTGTTATTCAATCTATCTCGTC 58.719 37.037 0.00 0.00 0.00 4.20
129 130 8.420945 CGTGTTATTCAATCTATCTCGTCAATC 58.579 37.037 0.00 0.00 0.00 2.67
143 144 3.994392 TCGTCAATCTGCTTACTGGTTTC 59.006 43.478 0.00 0.00 0.00 2.78
149 150 4.273148 TCTGCTTACTGGTTTCCTTCTC 57.727 45.455 0.00 0.00 0.00 2.87
154 155 1.292223 CTGGTTTCCTTCTCGGCGA 59.708 57.895 10.14 10.14 0.00 5.54
158 159 1.674817 GGTTTCCTTCTCGGCGAATGA 60.675 52.381 12.13 2.27 0.00 2.57
161 162 1.722011 TCCTTCTCGGCGAATGAAAC 58.278 50.000 12.13 0.00 0.00 2.78
169 170 3.049912 TCGGCGAATGAAACATCTATCG 58.950 45.455 7.35 0.00 0.00 2.92
179 180 7.897575 ATGAAACATCTATCGCTTCCTAATC 57.102 36.000 0.00 0.00 0.00 1.75
257 2717 4.451096 ACTGCGATAAAAACACTCGAATGT 59.549 37.500 0.00 0.00 34.41 2.71
263 2723 4.474226 AAAAACACTCGAATGTGAGAGC 57.526 40.909 11.39 0.00 40.12 4.09
317 2777 4.108570 AGAGAGAGGAGAGAGGAAGTGTA 58.891 47.826 0.00 0.00 0.00 2.90
322 2782 1.465794 GAGAGAGGAAGTGTAGCGGT 58.534 55.000 0.00 0.00 0.00 5.68
426 2886 3.228453 CCAGAGTCCTAATTAGCCCGTA 58.772 50.000 6.99 0.00 0.00 4.02
458 2918 2.447250 GCATGATGCACGACATGAAAG 58.553 47.619 24.62 7.43 44.26 2.62
521 2982 6.551601 TGGGTTACACAAATTGTATGGACTTT 59.448 34.615 0.00 0.00 40.53 2.66
523 2984 7.929245 GGGTTACACAAATTGTATGGACTTTTT 59.071 33.333 0.00 0.00 40.53 1.94
535 2996 9.883142 TTGTATGGACTTTTTCAAAAACATTCT 57.117 25.926 3.32 0.00 0.00 2.40
536 2997 9.528018 TGTATGGACTTTTTCAAAAACATTCTC 57.472 29.630 3.32 0.00 0.00 2.87
539 3000 8.702163 TGGACTTTTTCAAAAACATTCTCTTC 57.298 30.769 0.00 0.00 0.00 2.87
546 3007 8.776376 TTTCAAAAACATTCTCTTCTTTTGCT 57.224 26.923 0.00 0.00 37.06 3.91
551 3012 6.809630 AACATTCTCTTCTTTTGCTACTCC 57.190 37.500 0.00 0.00 0.00 3.85
556 3017 4.841246 TCTCTTCTTTTGCTACTCCCTCTT 59.159 41.667 0.00 0.00 0.00 2.85
557 3018 6.017192 TCTCTTCTTTTGCTACTCCCTCTTA 58.983 40.000 0.00 0.00 0.00 2.10
558 3019 6.038997 TCTTCTTTTGCTACTCCCTCTTAC 57.961 41.667 0.00 0.00 0.00 2.34
560 3021 5.818678 TCTTTTGCTACTCCCTCTTACAA 57.181 39.130 0.00 0.00 0.00 2.41
561 3022 6.182507 TCTTTTGCTACTCCCTCTTACAAA 57.817 37.500 0.00 0.00 0.00 2.83
562 3023 5.995897 TCTTTTGCTACTCCCTCTTACAAAC 59.004 40.000 0.00 0.00 0.00 2.93
563 3024 5.562298 TTTGCTACTCCCTCTTACAAACT 57.438 39.130 0.00 0.00 0.00 2.66
564 3025 6.675413 TTTGCTACTCCCTCTTACAAACTA 57.325 37.500 0.00 0.00 0.00 2.24
565 3026 5.916661 TGCTACTCCCTCTTACAAACTAG 57.083 43.478 0.00 0.00 0.00 2.57
566 3027 5.331069 TGCTACTCCCTCTTACAAACTAGT 58.669 41.667 0.00 0.00 0.00 2.57
623 3084 9.148879 AGTGACCTACAACATCTTATATTAGCT 57.851 33.333 0.00 0.00 0.00 3.32
693 3158 5.405571 CGTAATCATCACTTACACATAGGGC 59.594 44.000 0.00 0.00 0.00 5.19
768 3250 0.234106 CAGTAGCGTGCATGCATAGC 59.766 55.000 31.13 31.13 37.31 2.97
774 3256 1.063006 GTGCATGCATAGCGTGTGG 59.937 57.895 25.64 0.00 46.10 4.17
786 3268 1.080974 CGTGTGGGAGGACGTGTAC 60.081 63.158 0.00 0.00 0.00 2.90
793 3275 1.080974 GAGGACGTGTACGGGTGTG 60.081 63.158 9.40 0.00 44.95 3.82
794 3276 1.518056 GAGGACGTGTACGGGTGTGA 61.518 60.000 9.40 0.00 44.95 3.58
795 3277 1.080974 GGACGTGTACGGGTGTGAG 60.081 63.158 9.40 0.00 44.95 3.51
796 3278 1.656441 GACGTGTACGGGTGTGAGT 59.344 57.895 9.40 0.00 44.95 3.41
797 3279 0.662374 GACGTGTACGGGTGTGAGTG 60.662 60.000 9.40 0.00 44.95 3.51
798 3280 1.102809 ACGTGTACGGGTGTGAGTGA 61.103 55.000 9.40 0.00 44.95 3.41
799 3281 0.386858 CGTGTACGGGTGTGAGTGAG 60.387 60.000 0.00 0.00 35.37 3.51
800 3282 0.666577 GTGTACGGGTGTGAGTGAGC 60.667 60.000 0.00 0.00 0.00 4.26
824 3306 3.406361 CGTCGTGAGTGTGCTGCC 61.406 66.667 0.00 0.00 0.00 4.85
841 3323 0.320421 GCCAGTGTGGTCGTGTACAT 60.320 55.000 0.00 0.00 40.46 2.29
895 3385 8.774183 TGCCTAACTTTCCTTCTATATAAACCA 58.226 33.333 0.00 0.00 0.00 3.67
922 3412 1.371932 CCTGCAGCATTTGGGCAAA 59.628 52.632 8.66 0.00 37.06 3.68
1017 3514 0.249120 CCATGTCTCTGCCCACGTTA 59.751 55.000 0.00 0.00 0.00 3.18
1026 3523 1.347221 GCCCACGTTAATCTTCGCG 59.653 57.895 0.00 0.00 0.00 5.87
1242 3739 2.389143 GACTCGTTTAACGCCGCG 59.611 61.111 13.06 12.14 42.21 6.46
1248 3745 2.125832 TTTAACGCCGCGGAGGAG 60.126 61.111 33.48 18.77 45.00 3.69
1513 4010 0.451383 TACCGCAGATGCATGCAAAC 59.549 50.000 26.68 20.83 46.87 2.93
1545 4042 1.755959 ACATTGCAAGCACCTGAACAA 59.244 42.857 4.94 0.00 0.00 2.83
1555 4052 2.488153 GCACCTGAACAATTACCACCTC 59.512 50.000 0.00 0.00 0.00 3.85
1567 4064 6.072673 ACAATTACCACCTCAATCGAACTTTC 60.073 38.462 0.00 0.00 0.00 2.62
1570 4067 4.461198 ACCACCTCAATCGAACTTTCTTT 58.539 39.130 0.00 0.00 0.00 2.52
1571 4068 5.617252 ACCACCTCAATCGAACTTTCTTTA 58.383 37.500 0.00 0.00 0.00 1.85
1572 4069 5.701290 ACCACCTCAATCGAACTTTCTTTAG 59.299 40.000 0.00 0.00 0.00 1.85
1573 4070 5.932303 CCACCTCAATCGAACTTTCTTTAGA 59.068 40.000 0.00 0.00 0.00 2.10
1574 4071 6.128526 CCACCTCAATCGAACTTTCTTTAGAC 60.129 42.308 0.00 0.00 0.00 2.59
1576 4073 7.171678 CACCTCAATCGAACTTTCTTTAGACTT 59.828 37.037 0.00 0.00 0.00 3.01
1666 4168 0.815734 ACGTGAGATTGTACCGGGAG 59.184 55.000 6.32 0.00 0.00 4.30
1809 4322 3.886123 TGTCCTAAGCTTAATTGCCTCC 58.114 45.455 7.74 0.00 0.00 4.30
2440 4953 1.736365 GCGTCCTACCCTGTCTAGCC 61.736 65.000 0.00 0.00 0.00 3.93
2454 4967 1.609072 TCTAGCCGATTCGATCAGTGG 59.391 52.381 7.83 0.00 0.00 4.00
2455 4968 1.338337 CTAGCCGATTCGATCAGTGGT 59.662 52.381 7.83 0.00 0.00 4.16
2512 5048 1.246649 TAAGCACCGTACGTTCCTGA 58.753 50.000 15.21 0.00 0.00 3.86
2563 5106 9.286170 AGCTACTCGTAGATAAATAATCTGACA 57.714 33.333 8.22 0.00 44.95 3.58
2624 5172 8.288208 AGATGATAAATAGGTACTGTAACGACG 58.712 37.037 0.00 0.00 41.52 5.12
2663 5211 0.170339 GCGGGGTTGCTTGTATTGTC 59.830 55.000 0.00 0.00 0.00 3.18
2683 5232 1.189403 GTACGTAGCTGCGTGTGATC 58.811 55.000 35.38 17.87 45.33 2.92
2749 5298 6.770785 AGTTGTAACCACAGAACATGTATTGT 59.229 34.615 0.00 3.89 41.41 2.71
2750 5302 7.934665 AGTTGTAACCACAGAACATGTATTGTA 59.065 33.333 13.05 0.00 41.41 2.41
2751 5303 8.561212 GTTGTAACCACAGAACATGTATTGTAA 58.439 33.333 13.05 3.17 41.41 2.41
2754 5306 7.994425 AACCACAGAACATGTATTGTAATGA 57.006 32.000 13.05 0.00 41.41 2.57
2767 5319 4.850859 TTGTAATGAGTATTTCACCGCG 57.149 40.909 0.00 0.00 38.99 6.46
2772 5324 5.560966 AATGAGTATTTCACCGCGAAAAT 57.439 34.783 8.23 13.01 46.48 1.82
2781 5334 5.459110 TTCACCGCGAAAATTATACAGAC 57.541 39.130 8.23 0.00 0.00 3.51
2804 5357 6.044046 ACGATGTATTAGGTTGCGTATTTCA 58.956 36.000 0.00 0.00 0.00 2.69
2807 5360 4.567558 TGTATTAGGTTGCGTATTTCACCG 59.432 41.667 0.00 0.00 0.00 4.94
2821 5375 9.132521 GCGTATTTCACCGTTATATATACACTT 57.867 33.333 0.00 0.00 0.00 3.16
2826 5388 8.578308 TTCACCGTTATATATACACTTTTCCG 57.422 34.615 0.00 0.00 0.00 4.30
2885 5447 0.877071 GTTCATGCTGACAGTGTGGG 59.123 55.000 0.00 0.00 0.00 4.61
2914 5476 5.060506 TCCAAAAACGACTTTATCAGCTCA 58.939 37.500 0.00 0.00 0.00 4.26
2926 5488 0.613012 TCAGCTCACAGCAGCCTAGA 60.613 55.000 0.00 0.00 45.56 2.43
2927 5489 0.459934 CAGCTCACAGCAGCCTAGAC 60.460 60.000 0.00 0.00 45.56 2.59
2928 5490 0.614415 AGCTCACAGCAGCCTAGACT 60.614 55.000 0.00 0.00 45.56 3.24
2929 5491 1.107114 GCTCACAGCAGCCTAGACTA 58.893 55.000 0.00 0.00 41.89 2.59
2930 5492 1.066908 GCTCACAGCAGCCTAGACTAG 59.933 57.143 2.18 2.18 41.89 2.57
2947 5509 0.826715 TAGAGCCACTGGAGCATGTC 59.173 55.000 0.00 0.00 0.00 3.06
3055 5617 4.202161 CCATCCTGCTCTATTACTTGACGT 60.202 45.833 0.00 0.00 0.00 4.34
3235 7207 2.023673 TGGTTTTGCAGGTGTCTTCAG 58.976 47.619 0.00 0.00 0.00 3.02
3245 7217 4.379186 GCAGGTGTCTTCAGAATTGACATG 60.379 45.833 8.15 5.54 41.78 3.21
3268 7240 2.361104 CTTGGCCCGGCTAGCAAA 60.361 61.111 18.24 0.00 0.00 3.68
3269 7241 2.675075 TTGGCCCGGCTAGCAAAC 60.675 61.111 18.24 2.26 0.00 2.93
3271 7243 4.770874 GGCCCGGCTAGCAAACGA 62.771 66.667 18.24 0.00 0.00 3.85
3272 7244 3.497031 GCCCGGCTAGCAAACGAC 61.497 66.667 18.24 3.35 0.00 4.34
3273 7245 2.047655 CCCGGCTAGCAAACGACA 60.048 61.111 18.24 0.00 0.00 4.35
3274 7246 2.100631 CCCGGCTAGCAAACGACAG 61.101 63.158 18.24 0.00 0.00 3.51
3275 7247 1.374252 CCGGCTAGCAAACGACAGT 60.374 57.895 18.24 0.00 0.00 3.55
3276 7248 0.108992 CCGGCTAGCAAACGACAGTA 60.109 55.000 18.24 0.00 0.00 2.74
3277 7249 1.470979 CCGGCTAGCAAACGACAGTAT 60.471 52.381 18.24 0.00 0.00 2.12
3278 7250 2.268298 CGGCTAGCAAACGACAGTATT 58.732 47.619 18.24 0.00 0.00 1.89
3279 7251 2.671396 CGGCTAGCAAACGACAGTATTT 59.329 45.455 18.24 0.00 0.00 1.40
3280 7252 3.241995 CGGCTAGCAAACGACAGTATTTC 60.242 47.826 18.24 0.00 0.00 2.17
3281 7253 3.241995 GGCTAGCAAACGACAGTATTTCG 60.242 47.826 18.24 0.00 42.36 3.46
3282 7254 2.875080 AGCAAACGACAGTATTTCGC 57.125 45.000 0.00 0.00 40.24 4.70
3283 7255 1.463444 AGCAAACGACAGTATTTCGCC 59.537 47.619 0.00 0.00 40.24 5.54
3284 7256 1.465187 GCAAACGACAGTATTTCGCCC 60.465 52.381 0.00 0.00 40.24 6.13
3285 7257 2.073816 CAAACGACAGTATTTCGCCCT 58.926 47.619 0.00 0.00 40.24 5.19
3286 7258 3.255725 CAAACGACAGTATTTCGCCCTA 58.744 45.455 0.00 0.00 40.24 3.53
3287 7259 2.865343 ACGACAGTATTTCGCCCTAG 57.135 50.000 0.00 0.00 40.24 3.02
3288 7260 2.097825 ACGACAGTATTTCGCCCTAGT 58.902 47.619 0.00 0.00 40.24 2.57
3289 7261 3.282021 ACGACAGTATTTCGCCCTAGTA 58.718 45.455 0.00 0.00 40.24 1.82
3290 7262 3.887716 ACGACAGTATTTCGCCCTAGTAT 59.112 43.478 0.00 0.00 40.24 2.12
3291 7263 4.340381 ACGACAGTATTTCGCCCTAGTATT 59.660 41.667 0.00 0.00 40.24 1.89
3292 7264 5.163478 ACGACAGTATTTCGCCCTAGTATTT 60.163 40.000 0.00 0.00 40.24 1.40
3293 7265 5.751990 CGACAGTATTTCGCCCTAGTATTTT 59.248 40.000 0.00 0.00 0.00 1.82
3294 7266 6.257193 CGACAGTATTTCGCCCTAGTATTTTT 59.743 38.462 0.00 0.00 0.00 1.94
3320 7292 7.861176 TTTTACAAATTCGGACTTGTATTGC 57.139 32.000 0.00 0.00 37.73 3.56
3321 7293 4.434713 ACAAATTCGGACTTGTATTGCC 57.565 40.909 0.00 0.00 34.04 4.52
3322 7294 4.079253 ACAAATTCGGACTTGTATTGCCT 58.921 39.130 0.00 0.00 34.04 4.75
3323 7295 4.522789 ACAAATTCGGACTTGTATTGCCTT 59.477 37.500 0.00 0.00 34.04 4.35
3324 7296 4.965119 AATTCGGACTTGTATTGCCTTC 57.035 40.909 0.00 0.00 0.00 3.46
3325 7297 3.410631 TTCGGACTTGTATTGCCTTCA 57.589 42.857 0.00 0.00 0.00 3.02
3326 7298 3.627395 TCGGACTTGTATTGCCTTCAT 57.373 42.857 0.00 0.00 0.00 2.57
3327 7299 3.950397 TCGGACTTGTATTGCCTTCATT 58.050 40.909 0.00 0.00 0.00 2.57
3328 7300 3.938963 TCGGACTTGTATTGCCTTCATTC 59.061 43.478 0.00 0.00 0.00 2.67
3329 7301 3.941483 CGGACTTGTATTGCCTTCATTCT 59.059 43.478 0.00 0.00 0.00 2.40
3330 7302 5.105106 TCGGACTTGTATTGCCTTCATTCTA 60.105 40.000 0.00 0.00 0.00 2.10
3331 7303 5.584649 CGGACTTGTATTGCCTTCATTCTAA 59.415 40.000 0.00 0.00 0.00 2.10
3332 7304 6.093495 CGGACTTGTATTGCCTTCATTCTAAA 59.907 38.462 0.00 0.00 0.00 1.85
3333 7305 7.201732 CGGACTTGTATTGCCTTCATTCTAAAT 60.202 37.037 0.00 0.00 0.00 1.40
3334 7306 8.470002 GGACTTGTATTGCCTTCATTCTAAATT 58.530 33.333 0.00 0.00 0.00 1.82
3400 7372 7.935338 TCTTTACCTAATAATAAAGGACGCG 57.065 36.000 3.53 3.53 38.43 6.01
3401 7373 7.491682 TCTTTACCTAATAATAAAGGACGCGT 58.508 34.615 13.85 13.85 38.43 6.01
3402 7374 7.649306 TCTTTACCTAATAATAAAGGACGCGTC 59.351 37.037 30.67 30.67 38.43 5.19
3403 7375 5.526506 ACCTAATAATAAAGGACGCGTCT 57.473 39.130 35.50 20.70 36.66 4.18
3404 7376 6.639632 ACCTAATAATAAAGGACGCGTCTA 57.360 37.500 35.50 22.15 36.66 2.59
3405 7377 6.675987 ACCTAATAATAAAGGACGCGTCTAG 58.324 40.000 35.50 24.25 36.66 2.43
3406 7378 5.572126 CCTAATAATAAAGGACGCGTCTAGC 59.428 44.000 35.50 21.02 37.52 3.42
3437 7409 2.718731 CTCGCTAGCACTCCTCGG 59.281 66.667 16.45 0.00 0.00 4.63
3438 7410 3.477224 CTCGCTAGCACTCCTCGGC 62.477 68.421 16.45 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.477484 CTCGTAACAAGCATATAAATAAGTCCT 57.523 33.333 0.00 0.00 0.00 3.85
100 101 8.068380 TGACGAGATAGATTGAATAACACGTAG 58.932 37.037 0.00 0.00 0.00 3.51
104 105 9.469807 AGATTGACGAGATAGATTGAATAACAC 57.530 33.333 0.00 0.00 0.00 3.32
113 114 7.144661 CAGTAAGCAGATTGACGAGATAGATT 58.855 38.462 0.00 0.00 0.00 2.40
125 126 5.006386 AGAAGGAAACCAGTAAGCAGATTG 58.994 41.667 0.00 0.00 0.00 2.67
129 130 2.996621 CGAGAAGGAAACCAGTAAGCAG 59.003 50.000 0.00 0.00 0.00 4.24
143 144 1.438651 TGTTTCATTCGCCGAGAAGG 58.561 50.000 0.00 0.00 42.92 3.46
149 150 2.410262 GCGATAGATGTTTCATTCGCCG 60.410 50.000 12.99 0.00 43.21 6.46
154 155 8.153550 AGATTAGGAAGCGATAGATGTTTCATT 58.846 33.333 0.00 0.00 39.76 2.57
158 159 7.055667 TCAGATTAGGAAGCGATAGATGTTT 57.944 36.000 0.00 0.00 39.76 2.83
161 162 7.116090 CAGTTTCAGATTAGGAAGCGATAGATG 59.884 40.741 0.00 0.00 39.76 2.90
169 170 2.685388 GGGCAGTTTCAGATTAGGAAGC 59.315 50.000 0.00 0.00 0.00 3.86
172 173 4.620723 TCTAGGGCAGTTTCAGATTAGGA 58.379 43.478 0.00 0.00 0.00 2.94
215 216 2.308866 AGTTTAGGCCTGCCAGTTACAT 59.691 45.455 17.99 0.00 38.92 2.29
216 217 1.702957 AGTTTAGGCCTGCCAGTTACA 59.297 47.619 17.99 0.00 38.92 2.41
217 218 2.084546 CAGTTTAGGCCTGCCAGTTAC 58.915 52.381 17.99 2.64 38.92 2.50
218 219 2.489938 CAGTTTAGGCCTGCCAGTTA 57.510 50.000 17.99 0.00 38.92 2.24
241 2701 5.053811 TGCTCTCACATTCGAGTGTTTTTA 58.946 37.500 11.29 0.00 40.37 1.52
242 2702 3.876914 TGCTCTCACATTCGAGTGTTTTT 59.123 39.130 11.29 0.00 40.37 1.94
243 2703 3.466836 TGCTCTCACATTCGAGTGTTTT 58.533 40.909 11.29 0.00 40.37 2.43
285 2745 2.178580 CTCCTCTCTCTTGGAGCTTGT 58.821 52.381 0.00 0.00 42.62 3.16
292 2752 3.290710 CTTCCTCTCTCCTCTCTCTTGG 58.709 54.545 0.00 0.00 0.00 3.61
293 2753 3.696051 CACTTCCTCTCTCCTCTCTCTTG 59.304 52.174 0.00 0.00 0.00 3.02
294 2754 3.333680 ACACTTCCTCTCTCCTCTCTCTT 59.666 47.826 0.00 0.00 0.00 2.85
295 2755 2.919602 ACACTTCCTCTCTCCTCTCTCT 59.080 50.000 0.00 0.00 0.00 3.10
296 2756 3.366052 ACACTTCCTCTCTCCTCTCTC 57.634 52.381 0.00 0.00 0.00 3.20
317 2777 2.698855 AGTATGCTTGATTCACCGCT 57.301 45.000 8.17 0.00 0.00 5.52
377 2837 3.056536 TCCAAGTCACTAGCATCACTCAC 60.057 47.826 0.00 0.00 0.00 3.51
408 2868 3.255395 GGAGTACGGGCTAATTAGGACTC 59.745 52.174 14.28 9.85 33.00 3.36
412 2872 3.006644 GGAAGGAGTACGGGCTAATTAGG 59.993 52.174 14.28 0.48 0.00 2.69
426 2886 1.753141 GCATCATGCCATGGAAGGAGT 60.753 52.381 18.40 0.00 37.42 3.85
458 2918 6.677913 TGTATTAGCAAACAGAAGAAAAGGC 58.322 36.000 0.00 0.00 0.00 4.35
492 2952 5.923684 CCATACAATTTGTGTAACCCAACAC 59.076 40.000 12.30 0.25 45.81 3.32
521 2982 8.776376 AGCAAAAGAAGAGAATGTTTTTGAAA 57.224 26.923 11.00 0.00 39.73 2.69
523 2984 8.686334 AGTAGCAAAAGAAGAGAATGTTTTTGA 58.314 29.630 11.00 0.00 39.73 2.69
529 2990 5.013599 AGGGAGTAGCAAAAGAAGAGAATGT 59.986 40.000 0.00 0.00 0.00 2.71
530 2991 5.495640 AGGGAGTAGCAAAAGAAGAGAATG 58.504 41.667 0.00 0.00 0.00 2.67
531 2992 5.487131 AGAGGGAGTAGCAAAAGAAGAGAAT 59.513 40.000 0.00 0.00 0.00 2.40
532 2993 4.841246 AGAGGGAGTAGCAAAAGAAGAGAA 59.159 41.667 0.00 0.00 0.00 2.87
534 2995 4.817318 AGAGGGAGTAGCAAAAGAAGAG 57.183 45.455 0.00 0.00 0.00 2.85
535 2996 5.542635 TGTAAGAGGGAGTAGCAAAAGAAGA 59.457 40.000 0.00 0.00 0.00 2.87
536 2997 5.794894 TGTAAGAGGGAGTAGCAAAAGAAG 58.205 41.667 0.00 0.00 0.00 2.85
538 2999 5.818678 TTGTAAGAGGGAGTAGCAAAAGA 57.181 39.130 0.00 0.00 0.00 2.52
539 3000 5.998363 AGTTTGTAAGAGGGAGTAGCAAAAG 59.002 40.000 0.00 0.00 0.00 2.27
648 3109 9.924650 ATTACGAAATACTCTCACTGTAAAACT 57.075 29.630 0.00 0.00 0.00 2.66
657 3118 8.635877 AAGTGATGATTACGAAATACTCTCAC 57.364 34.615 0.00 0.00 0.00 3.51
693 3158 6.915300 TGACGTATTTTGAATGTGAGTTTTGG 59.085 34.615 0.00 0.00 0.00 3.28
734 3199 2.167075 GCTACTGCCTTCCATTGCAAAT 59.833 45.455 1.71 0.00 36.98 2.32
735 3200 1.545582 GCTACTGCCTTCCATTGCAAA 59.454 47.619 1.71 0.00 36.98 3.68
736 3201 1.176527 GCTACTGCCTTCCATTGCAA 58.823 50.000 0.00 0.00 36.98 4.08
737 3202 1.026182 CGCTACTGCCTTCCATTGCA 61.026 55.000 0.00 0.00 35.36 4.08
738 3203 1.026718 ACGCTACTGCCTTCCATTGC 61.027 55.000 0.00 0.00 35.36 3.56
739 3204 0.729116 CACGCTACTGCCTTCCATTG 59.271 55.000 0.00 0.00 35.36 2.82
740 3205 1.026718 GCACGCTACTGCCTTCCATT 61.027 55.000 0.00 0.00 35.36 3.16
768 3250 1.080974 GTACACGTCCTCCCACACG 60.081 63.158 0.00 0.00 41.90 4.49
774 3256 2.270986 ACACCCGTACACGTCCTCC 61.271 63.158 0.58 0.00 37.74 4.30
786 3268 2.126307 CTCGCTCACTCACACCCG 60.126 66.667 0.00 0.00 0.00 5.28
793 3275 1.510204 CGACGTCACTCGCTCACTC 60.510 63.158 17.16 0.00 44.19 3.51
794 3276 2.252346 ACGACGTCACTCGCTCACT 61.252 57.895 17.16 0.00 44.19 3.41
795 3277 2.075489 CACGACGTCACTCGCTCAC 61.075 63.158 17.16 0.00 44.19 3.51
796 3278 2.171489 CTCACGACGTCACTCGCTCA 62.171 60.000 17.16 0.00 44.19 4.26
797 3279 1.510204 CTCACGACGTCACTCGCTC 60.510 63.158 17.16 0.00 44.19 5.03
798 3280 2.252346 ACTCACGACGTCACTCGCT 61.252 57.895 17.16 0.00 44.19 4.93
799 3281 2.075489 CACTCACGACGTCACTCGC 61.075 63.158 17.16 0.00 44.19 5.03
800 3282 0.992263 CACACTCACGACGTCACTCG 60.992 60.000 17.16 4.41 46.00 4.18
824 3306 4.272504 AGAAAAATGTACACGACCACACTG 59.727 41.667 0.00 0.00 0.00 3.66
895 3385 0.689745 AATGCTGCAGGGATGGCATT 60.690 50.000 17.12 15.26 46.30 3.56
922 3412 2.943033 ACGTGTTGCTTAAGCTTCTTGT 59.057 40.909 26.90 16.85 42.66 3.16
1017 3514 1.226717 GACGAGGAGCGCGAAGATT 60.227 57.895 12.10 0.00 46.04 2.40
1191 3688 2.280186 GCGCGGAATACCTCCAGG 60.280 66.667 8.83 0.00 45.74 4.45
1242 3739 4.154347 CGGTGGCTGCTCTCCTCC 62.154 72.222 0.00 0.00 34.70 4.30
1395 3892 1.997311 CCTCCAGTCCATGCTCCCA 60.997 63.158 0.00 0.00 0.00 4.37
1497 3994 2.447250 CTTAGTTTGCATGCATCTGCG 58.553 47.619 23.37 13.42 45.30 5.18
1545 4042 5.805728 AGAAAGTTCGATTGAGGTGGTAAT 58.194 37.500 0.00 0.00 0.00 1.89
1617 4119 1.314730 ACTTTTCCGTTTGACCGCAT 58.685 45.000 0.00 0.00 0.00 4.73
1666 4168 2.897969 TGTTTGTAGACTCTGGTCCTCC 59.102 50.000 0.00 0.00 43.05 4.30
1782 4295 7.211835 GGCAATTAAGCTTAGGACATGTCCG 62.212 48.000 33.78 22.98 43.70 4.79
1809 4322 9.864034 GTTATTGGATTAGTACATGATGAAACG 57.136 33.333 0.00 0.00 0.00 3.60
1923 4436 2.338620 CTCCGACAGCGACACCAA 59.661 61.111 0.00 0.00 40.82 3.67
2315 4828 5.452496 CCACGAGTTCTTCATGATCCAGTAT 60.452 44.000 0.00 0.00 0.00 2.12
2440 4953 0.647410 GTGCACCACTGATCGAATCG 59.353 55.000 5.22 0.00 0.00 3.34
2455 4968 2.048222 GCCAGCTAGTGACGTGCA 60.048 61.111 0.00 0.00 0.00 4.57
2512 5048 1.022735 AGTCGATCGGATAAGCGTGT 58.977 50.000 16.41 0.00 0.00 4.49
2577 5120 8.504005 TCATCTACACATCTATATGTACACACG 58.496 37.037 0.00 0.00 44.70 4.49
2623 5171 2.006888 ACATACTTTGATTGGGTCGCG 58.993 47.619 0.00 0.00 0.00 5.87
2624 5172 2.477863 GCACATACTTTGATTGGGTCGC 60.478 50.000 0.00 0.00 0.00 5.19
2663 5211 0.522705 ATCACACGCAGCTACGTACG 60.523 55.000 12.49 15.01 46.34 3.67
2705 5254 7.141100 ACAACTTACAAGCCAATATGTACAC 57.859 36.000 0.00 0.00 32.07 2.90
2749 5298 6.671614 ATTTTCGCGGTGAAATACTCATTA 57.328 33.333 16.59 0.96 45.62 1.90
2750 5302 5.560966 ATTTTCGCGGTGAAATACTCATT 57.439 34.783 16.59 0.00 45.62 2.57
2751 5303 5.560966 AATTTTCGCGGTGAAATACTCAT 57.439 34.783 16.59 5.16 45.62 2.90
2754 5306 7.493320 TCTGTATAATTTTCGCGGTGAAATACT 59.507 33.333 16.59 7.64 45.62 2.12
2781 5334 6.352526 GTGAAATACGCAACCTAATACATCG 58.647 40.000 0.00 0.00 0.00 3.84
2804 5357 7.042523 GCAACGGAAAAGTGTATATATAACGGT 60.043 37.037 0.00 0.00 0.00 4.83
2807 5360 8.280497 CCAGCAACGGAAAAGTGTATATATAAC 58.720 37.037 0.00 0.00 0.00 1.89
2821 5375 1.323271 TGGCAAACCAGCAACGGAAA 61.323 50.000 0.00 0.00 42.67 3.13
2885 5447 7.605410 TGATAAAGTCGTTTTTGGATCTACC 57.395 36.000 0.00 0.00 39.54 3.18
2914 5476 1.398692 GCTCTAGTCTAGGCTGCTGT 58.601 55.000 7.24 0.00 0.00 4.40
2926 5488 0.829333 CATGCTCCAGTGGCTCTAGT 59.171 55.000 3.51 0.00 0.00 2.57
2927 5489 0.829333 ACATGCTCCAGTGGCTCTAG 59.171 55.000 3.51 0.00 0.00 2.43
2928 5490 0.826715 GACATGCTCCAGTGGCTCTA 59.173 55.000 3.51 0.00 0.00 2.43
2929 5491 0.908656 AGACATGCTCCAGTGGCTCT 60.909 55.000 3.51 0.00 0.00 4.09
2930 5492 0.461693 GAGACATGCTCCAGTGGCTC 60.462 60.000 3.51 0.00 42.73 4.70
3044 5606 1.068055 AGTTCGCGGACGTCAAGTAAT 60.068 47.619 18.91 0.00 41.18 1.89
3047 5609 1.660575 CAGTTCGCGGACGTCAAGT 60.661 57.895 18.91 2.76 41.18 3.16
3055 5617 2.954684 AATCCAGCCAGTTCGCGGA 61.955 57.895 6.13 0.00 36.41 5.54
3150 5712 2.287584 TCCATTTCCATCTCAAGGGGT 58.712 47.619 0.00 0.00 0.00 4.95
3235 7207 2.738314 GCCAAGCCAAACATGTCAATTC 59.262 45.455 0.00 0.00 0.00 2.17
3258 7230 1.922570 ATACTGTCGTTTGCTAGCCG 58.077 50.000 13.29 8.98 0.00 5.52
3259 7231 3.241995 CGAAATACTGTCGTTTGCTAGCC 60.242 47.826 13.29 0.00 33.80 3.93
3260 7232 3.781280 GCGAAATACTGTCGTTTGCTAGC 60.781 47.826 8.10 8.10 40.64 3.42
3261 7233 3.241995 GGCGAAATACTGTCGTTTGCTAG 60.242 47.826 12.66 0.00 40.64 3.42
3262 7234 2.669434 GGCGAAATACTGTCGTTTGCTA 59.331 45.455 12.66 0.00 40.64 3.49
3263 7235 1.463444 GGCGAAATACTGTCGTTTGCT 59.537 47.619 12.66 0.00 40.64 3.91
3264 7236 1.465187 GGGCGAAATACTGTCGTTTGC 60.465 52.381 6.94 6.94 40.64 3.68
3265 7237 2.073816 AGGGCGAAATACTGTCGTTTG 58.926 47.619 0.00 0.00 40.64 2.93
3266 7238 2.467566 AGGGCGAAATACTGTCGTTT 57.532 45.000 0.00 0.00 40.64 3.60
3267 7239 2.494870 ACTAGGGCGAAATACTGTCGTT 59.505 45.455 0.00 0.00 40.64 3.85
3268 7240 2.097825 ACTAGGGCGAAATACTGTCGT 58.902 47.619 0.00 0.00 40.64 4.34
3269 7241 2.865343 ACTAGGGCGAAATACTGTCG 57.135 50.000 0.00 0.00 41.46 4.35
3270 7242 7.549615 AAAAATACTAGGGCGAAATACTGTC 57.450 36.000 0.00 0.00 0.00 3.51
3295 7267 7.382759 GGCAATACAAGTCCGAATTTGTAAAAA 59.617 33.333 0.00 0.00 39.91 1.94
3296 7268 6.864165 GGCAATACAAGTCCGAATTTGTAAAA 59.136 34.615 0.00 0.00 39.91 1.52
3297 7269 6.207810 AGGCAATACAAGTCCGAATTTGTAAA 59.792 34.615 0.00 0.00 39.91 2.01
3298 7270 5.708230 AGGCAATACAAGTCCGAATTTGTAA 59.292 36.000 0.00 0.00 39.91 2.41
3299 7271 5.250200 AGGCAATACAAGTCCGAATTTGTA 58.750 37.500 0.00 0.00 40.51 2.41
3300 7272 4.079253 AGGCAATACAAGTCCGAATTTGT 58.921 39.130 0.00 0.00 38.66 2.83
3301 7273 4.701956 AGGCAATACAAGTCCGAATTTG 57.298 40.909 0.00 0.00 0.00 2.32
3302 7274 4.764823 TGAAGGCAATACAAGTCCGAATTT 59.235 37.500 0.00 0.00 0.00 1.82
3303 7275 4.331968 TGAAGGCAATACAAGTCCGAATT 58.668 39.130 0.00 0.00 0.00 2.17
3304 7276 3.950397 TGAAGGCAATACAAGTCCGAAT 58.050 40.909 0.00 0.00 0.00 3.34
3305 7277 3.410631 TGAAGGCAATACAAGTCCGAA 57.589 42.857 0.00 0.00 0.00 4.30
3306 7278 3.627395 ATGAAGGCAATACAAGTCCGA 57.373 42.857 0.00 0.00 0.00 4.55
3307 7279 3.941483 AGAATGAAGGCAATACAAGTCCG 59.059 43.478 0.00 0.00 0.00 4.79
3308 7280 7.391148 TTTAGAATGAAGGCAATACAAGTCC 57.609 36.000 0.00 0.00 0.00 3.85
3374 7346 9.630098 CGCGTCCTTTATTATTAGGTAAAGATA 57.370 33.333 0.00 0.00 39.24 1.98
3375 7347 8.146412 ACGCGTCCTTTATTATTAGGTAAAGAT 58.854 33.333 5.58 0.00 39.24 2.40
3376 7348 7.491682 ACGCGTCCTTTATTATTAGGTAAAGA 58.508 34.615 5.58 0.00 39.24 2.52
3377 7349 7.650903 AGACGCGTCCTTTATTATTAGGTAAAG 59.349 37.037 34.08 0.00 37.55 1.85
3378 7350 7.491682 AGACGCGTCCTTTATTATTAGGTAAA 58.508 34.615 34.08 0.00 33.15 2.01
3379 7351 7.042797 AGACGCGTCCTTTATTATTAGGTAA 57.957 36.000 34.08 0.00 33.15 2.85
3380 7352 6.639632 AGACGCGTCCTTTATTATTAGGTA 57.360 37.500 34.08 0.00 33.15 3.08
3381 7353 5.526506 AGACGCGTCCTTTATTATTAGGT 57.473 39.130 34.08 8.86 33.15 3.08
3382 7354 5.572126 GCTAGACGCGTCCTTTATTATTAGG 59.428 44.000 34.08 9.15 0.00 2.69
3383 7355 6.614331 GCTAGACGCGTCCTTTATTATTAG 57.386 41.667 34.08 24.29 0.00 1.73
3400 7372 2.580867 CACGGCTGCTCGCTAGAC 60.581 66.667 9.82 0.00 39.13 2.59
3401 7373 4.498520 GCACGGCTGCTCGCTAGA 62.499 66.667 9.82 0.00 40.63 2.43
3420 7392 2.718731 CCGAGGAGTGCTAGCGAG 59.281 66.667 10.77 0.00 0.00 5.03
3421 7393 3.518998 GCCGAGGAGTGCTAGCGA 61.519 66.667 10.77 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.