Multiple sequence alignment - TraesCS5D01G400800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G400800 chr5D 100.000 5244 0 0 1 5244 465724088 465718845 0.000000e+00 9684.0
1 TraesCS5D01G400800 chr5D 89.840 187 15 2 4608 4793 399222773 399222956 2.440000e-58 237.0
2 TraesCS5D01G400800 chr5B 94.425 3139 91 35 2180 5244 572954320 572951192 0.000000e+00 4750.0
3 TraesCS5D01G400800 chr5B 89.766 1456 72 35 593 2007 572955871 572954452 0.000000e+00 1792.0
4 TraesCS5D01G400800 chr5A 94.909 2848 106 21 2414 5244 586152082 586149257 0.000000e+00 4420.0
5 TraesCS5D01G400800 chr5A 90.140 1714 102 38 489 2167 586153961 586152280 0.000000e+00 2167.0
6 TraesCS5D01G400800 chr5A 97.887 142 3 0 2180 2321 586152296 586152155 4.060000e-61 246.0
7 TraesCS5D01G400800 chr5A 90.055 181 14 1 1 181 586163091 586162915 1.140000e-56 231.0
8 TraesCS5D01G400800 chr5A 88.298 188 17 4 4608 4793 504869138 504869322 2.460000e-53 220.0
9 TraesCS5D01G400800 chr5A 88.172 186 15 4 313 491 586162918 586162733 1.140000e-51 215.0
10 TraesCS5D01G400800 chr5A 94.286 105 3 2 211 313 39735791 39735688 1.950000e-34 158.0
11 TraesCS5D01G400800 chr5A 93.333 105 3 4 208 312 579321512 579321412 9.100000e-33 152.0
12 TraesCS5D01G400800 chr2D 73.510 604 117 39 3627 4207 554477308 554477891 6.930000e-44 189.0
13 TraesCS5D01G400800 chr2D 88.189 127 8 4 192 312 544204003 544203878 1.520000e-30 145.0
14 TraesCS5D01G400800 chr2B 73.077 598 118 38 3633 4207 660678294 660678871 6.980000e-39 172.0
15 TraesCS5D01G400800 chr6B 93.043 115 5 3 208 322 706113368 706113257 1.170000e-36 165.0
16 TraesCS5D01G400800 chr7A 94.286 105 3 3 211 315 108201854 108201753 1.950000e-34 158.0
17 TraesCS5D01G400800 chr6A 93.396 106 5 2 208 313 440537613 440537716 7.030000e-34 156.0
18 TraesCS5D01G400800 chr7B 93.333 105 6 1 211 315 682029248 682029145 2.530000e-33 154.0
19 TraesCS5D01G400800 chr4A 93.333 105 5 2 211 315 678341540 678341438 2.530000e-33 154.0
20 TraesCS5D01G400800 chr3D 92.523 107 6 1 208 314 11434973 11435077 9.100000e-33 152.0
21 TraesCS5D01G400800 chr2A 75.248 202 50 0 3041 3242 694632714 694632915 4.320000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G400800 chr5D 465718845 465724088 5243 True 9684.000000 9684 100.0000 1 5244 1 chr5D.!!$R1 5243
1 TraesCS5D01G400800 chr5B 572951192 572955871 4679 True 3271.000000 4750 92.0955 593 5244 2 chr5B.!!$R1 4651
2 TraesCS5D01G400800 chr5A 586149257 586153961 4704 True 2277.666667 4420 94.3120 489 5244 3 chr5A.!!$R3 4755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 369 0.028505 GTACGATCGACGCCTTGCTA 59.971 55.0 24.34 0.00 46.94 3.49 F
991 1032 0.102300 CGTGTGTGTGTGACAGAGGA 59.898 55.0 0.00 0.00 36.14 3.71 F
2354 2435 0.459237 ACGCGAGGAAGATTCTGCAG 60.459 55.0 15.93 7.63 0.00 4.41 F
2356 2437 1.285578 GCGAGGAAGATTCTGCAGTC 58.714 55.0 14.67 4.77 0.00 3.51 F
2359 2440 2.354103 CGAGGAAGATTCTGCAGTCCAA 60.354 50.0 19.33 5.99 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2371 1.144936 GGAGACCTGGGCGAGATTG 59.855 63.158 0.00 0.0 0.00 2.67 R
2395 2479 0.778815 CCGACGATCGCTTGATTAGC 59.221 55.000 16.60 0.0 46.83 3.09 R
3289 3379 0.104855 AGCGCAGACACTGAAGAACA 59.895 50.000 11.47 0.0 32.44 3.18 R
3304 3394 0.247974 GTTGATGATCAGTGCAGCGC 60.248 55.000 0.00 0.0 0.00 5.92 R
4309 4432 1.819288 TCCTCTGTCAATCCAGACGAC 59.181 52.381 0.00 0.0 41.41 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.749280 ATCATCAGACACGTCAAGCA 57.251 45.000 0.00 0.00 0.00 3.91
22 23 2.749280 TCATCAGACACGTCAAGCAT 57.251 45.000 0.00 0.00 0.00 3.79
23 24 2.340337 TCATCAGACACGTCAAGCATG 58.660 47.619 0.00 0.00 0.00 4.06
24 25 1.081892 ATCAGACACGTCAAGCATGC 58.918 50.000 10.51 10.51 0.00 4.06
25 26 0.950555 TCAGACACGTCAAGCATGCC 60.951 55.000 15.66 0.00 0.00 4.40
26 27 1.071299 AGACACGTCAAGCATGCCA 59.929 52.632 15.66 0.00 0.00 4.92
27 28 0.534877 AGACACGTCAAGCATGCCAA 60.535 50.000 15.66 0.00 0.00 4.52
28 29 0.310543 GACACGTCAAGCATGCCAAA 59.689 50.000 15.66 0.00 0.00 3.28
29 30 0.743688 ACACGTCAAGCATGCCAAAA 59.256 45.000 15.66 0.00 0.00 2.44
30 31 1.135915 ACACGTCAAGCATGCCAAAAA 59.864 42.857 15.66 0.00 0.00 1.94
31 32 1.522258 CACGTCAAGCATGCCAAAAAC 59.478 47.619 15.66 5.19 0.00 2.43
32 33 1.408702 ACGTCAAGCATGCCAAAAACT 59.591 42.857 15.66 0.00 0.00 2.66
33 34 2.159114 ACGTCAAGCATGCCAAAAACTT 60.159 40.909 15.66 0.00 0.00 2.66
34 35 2.865551 CGTCAAGCATGCCAAAAACTTT 59.134 40.909 15.66 0.00 0.00 2.66
35 36 4.047822 CGTCAAGCATGCCAAAAACTTTA 58.952 39.130 15.66 0.00 0.00 1.85
36 37 4.148696 CGTCAAGCATGCCAAAAACTTTAG 59.851 41.667 15.66 0.00 0.00 1.85
37 38 4.057432 TCAAGCATGCCAAAAACTTTAGC 58.943 39.130 15.66 0.00 0.00 3.09
38 39 3.044235 AGCATGCCAAAAACTTTAGCC 57.956 42.857 15.66 0.00 0.00 3.93
39 40 1.726248 GCATGCCAAAAACTTTAGCCG 59.274 47.619 6.36 0.00 0.00 5.52
40 41 2.336667 CATGCCAAAAACTTTAGCCGG 58.663 47.619 0.00 0.00 0.00 6.13
41 42 0.676736 TGCCAAAAACTTTAGCCGGG 59.323 50.000 2.18 0.00 0.00 5.73
42 43 0.963225 GCCAAAAACTTTAGCCGGGA 59.037 50.000 2.18 0.00 0.00 5.14
43 44 1.336517 GCCAAAAACTTTAGCCGGGAC 60.337 52.381 2.18 0.00 0.00 4.46
56 57 4.036977 GGGACGCTTTTGACGACA 57.963 55.556 0.00 0.00 0.00 4.35
57 58 1.568025 GGGACGCTTTTGACGACAC 59.432 57.895 0.00 0.00 0.00 3.67
58 59 1.568025 GGACGCTTTTGACGACACC 59.432 57.895 0.00 0.00 0.00 4.16
59 60 0.878961 GGACGCTTTTGACGACACCT 60.879 55.000 0.00 0.00 0.00 4.00
60 61 0.232303 GACGCTTTTGACGACACCTG 59.768 55.000 0.00 0.00 0.00 4.00
61 62 0.179094 ACGCTTTTGACGACACCTGA 60.179 50.000 0.00 0.00 0.00 3.86
62 63 1.148310 CGCTTTTGACGACACCTGAT 58.852 50.000 0.00 0.00 0.00 2.90
63 64 1.531149 CGCTTTTGACGACACCTGATT 59.469 47.619 0.00 0.00 0.00 2.57
64 65 2.411547 CGCTTTTGACGACACCTGATTC 60.412 50.000 0.00 0.00 0.00 2.52
65 66 2.095718 GCTTTTGACGACACCTGATTCC 60.096 50.000 0.00 0.00 0.00 3.01
66 67 2.178912 TTTGACGACACCTGATTCCC 57.821 50.000 0.00 0.00 0.00 3.97
67 68 0.037697 TTGACGACACCTGATTCCCG 60.038 55.000 0.00 0.00 0.00 5.14
68 69 1.810030 GACGACACCTGATTCCCGC 60.810 63.158 0.00 0.00 0.00 6.13
69 70 2.227089 GACGACACCTGATTCCCGCT 62.227 60.000 0.00 0.00 0.00 5.52
70 71 1.519455 CGACACCTGATTCCCGCTC 60.519 63.158 0.00 0.00 0.00 5.03
71 72 1.596934 GACACCTGATTCCCGCTCA 59.403 57.895 0.00 0.00 0.00 4.26
72 73 0.036388 GACACCTGATTCCCGCTCAA 60.036 55.000 0.00 0.00 0.00 3.02
73 74 0.620556 ACACCTGATTCCCGCTCAAT 59.379 50.000 0.00 0.00 0.00 2.57
74 75 1.019673 CACCTGATTCCCGCTCAATG 58.980 55.000 0.00 0.00 0.00 2.82
75 76 0.749454 ACCTGATTCCCGCTCAATGC 60.749 55.000 0.00 0.00 38.57 3.56
76 77 1.450531 CCTGATTCCCGCTCAATGCC 61.451 60.000 0.00 0.00 38.78 4.40
77 78 0.465097 CTGATTCCCGCTCAATGCCT 60.465 55.000 0.00 0.00 38.78 4.75
78 79 0.836606 TGATTCCCGCTCAATGCCTA 59.163 50.000 0.00 0.00 38.78 3.93
79 80 1.211703 TGATTCCCGCTCAATGCCTAA 59.788 47.619 0.00 0.00 38.78 2.69
80 81 1.876156 GATTCCCGCTCAATGCCTAAG 59.124 52.381 0.00 0.00 38.78 2.18
81 82 0.107214 TTCCCGCTCAATGCCTAAGG 60.107 55.000 0.00 0.00 38.78 2.69
82 83 1.224592 CCCGCTCAATGCCTAAGGT 59.775 57.895 0.00 0.00 38.78 3.50
83 84 0.394352 CCCGCTCAATGCCTAAGGTT 60.394 55.000 0.00 0.00 38.78 3.50
84 85 1.463674 CCGCTCAATGCCTAAGGTTT 58.536 50.000 0.00 0.00 38.78 3.27
85 86 1.401905 CCGCTCAATGCCTAAGGTTTC 59.598 52.381 0.00 0.00 38.78 2.78
86 87 1.062587 CGCTCAATGCCTAAGGTTTCG 59.937 52.381 0.00 0.00 38.78 3.46
87 88 2.084546 GCTCAATGCCTAAGGTTTCGT 58.915 47.619 0.00 0.00 35.15 3.85
88 89 2.096013 GCTCAATGCCTAAGGTTTCGTC 59.904 50.000 0.00 0.00 35.15 4.20
89 90 3.600388 CTCAATGCCTAAGGTTTCGTCT 58.400 45.455 0.00 0.00 0.00 4.18
90 91 3.596214 TCAATGCCTAAGGTTTCGTCTC 58.404 45.455 0.00 0.00 0.00 3.36
91 92 2.295253 ATGCCTAAGGTTTCGTCTCG 57.705 50.000 0.00 0.00 0.00 4.04
92 93 1.250328 TGCCTAAGGTTTCGTCTCGA 58.750 50.000 0.00 0.00 0.00 4.04
93 94 1.614903 TGCCTAAGGTTTCGTCTCGAA 59.385 47.619 0.40 0.40 44.28 3.71
94 95 2.232941 TGCCTAAGGTTTCGTCTCGAAT 59.767 45.455 5.46 0.00 45.28 3.34
95 96 3.259902 GCCTAAGGTTTCGTCTCGAATT 58.740 45.455 5.46 0.96 45.28 2.17
96 97 4.082081 TGCCTAAGGTTTCGTCTCGAATTA 60.082 41.667 5.46 1.97 45.28 1.40
97 98 5.048507 GCCTAAGGTTTCGTCTCGAATTAT 58.951 41.667 5.46 0.00 45.28 1.28
98 99 5.522824 GCCTAAGGTTTCGTCTCGAATTATT 59.477 40.000 5.46 4.09 45.28 1.40
99 100 6.036844 GCCTAAGGTTTCGTCTCGAATTATTT 59.963 38.462 5.46 2.42 45.28 1.40
100 101 7.223387 GCCTAAGGTTTCGTCTCGAATTATTTA 59.777 37.037 5.46 3.26 45.28 1.40
101 102 9.257651 CCTAAGGTTTCGTCTCGAATTATTTAT 57.742 33.333 5.46 0.00 45.28 1.40
103 104 7.390918 AGGTTTCGTCTCGAATTATTTATCG 57.609 36.000 5.46 0.00 45.28 2.92
104 105 7.198390 AGGTTTCGTCTCGAATTATTTATCGA 58.802 34.615 5.46 0.00 45.28 3.59
113 114 7.046292 TCGAATTATTTATCGAGGGAACTGA 57.954 36.000 0.00 0.00 44.43 3.41
114 115 7.667557 TCGAATTATTTATCGAGGGAACTGAT 58.332 34.615 0.00 0.00 44.43 2.90
115 116 7.598869 TCGAATTATTTATCGAGGGAACTGATG 59.401 37.037 0.00 0.00 44.43 3.07
116 117 7.385205 CGAATTATTTATCGAGGGAACTGATGT 59.615 37.037 0.00 0.00 44.43 3.06
117 118 8.980481 AATTATTTATCGAGGGAACTGATGTT 57.020 30.769 0.00 0.00 44.43 2.71
128 129 2.185004 ACTGATGTTCCCTGTTTCCG 57.815 50.000 0.00 0.00 0.00 4.30
129 130 1.271379 ACTGATGTTCCCTGTTTCCGG 60.271 52.381 0.00 0.00 0.00 5.14
130 131 1.003118 CTGATGTTCCCTGTTTCCGGA 59.997 52.381 0.00 0.00 0.00 5.14
131 132 1.271163 TGATGTTCCCTGTTTCCGGAC 60.271 52.381 1.83 0.00 0.00 4.79
132 133 0.037734 ATGTTCCCTGTTTCCGGACC 59.962 55.000 1.83 0.00 0.00 4.46
133 134 1.346479 TGTTCCCTGTTTCCGGACCA 61.346 55.000 1.83 2.68 0.00 4.02
134 135 0.037734 GTTCCCTGTTTCCGGACCAT 59.962 55.000 1.83 0.00 0.00 3.55
135 136 0.037590 TTCCCTGTTTCCGGACCATG 59.962 55.000 1.83 0.74 0.00 3.66
136 137 0.838554 TCCCTGTTTCCGGACCATGA 60.839 55.000 1.83 1.17 0.00 3.07
137 138 0.037590 CCCTGTTTCCGGACCATGAA 59.962 55.000 1.83 0.00 0.00 2.57
138 139 1.340991 CCCTGTTTCCGGACCATGAAT 60.341 52.381 1.83 0.00 0.00 2.57
139 140 2.446435 CCTGTTTCCGGACCATGAATT 58.554 47.619 1.83 0.00 0.00 2.17
140 141 3.616219 CCTGTTTCCGGACCATGAATTA 58.384 45.455 1.83 0.00 0.00 1.40
141 142 4.013728 CCTGTTTCCGGACCATGAATTAA 58.986 43.478 1.83 0.00 0.00 1.40
142 143 4.644685 CCTGTTTCCGGACCATGAATTAAT 59.355 41.667 1.83 0.00 0.00 1.40
143 144 5.825679 CCTGTTTCCGGACCATGAATTAATA 59.174 40.000 1.83 0.00 0.00 0.98
144 145 6.238648 CCTGTTTCCGGACCATGAATTAATAC 60.239 42.308 1.83 0.00 0.00 1.89
145 146 6.181190 TGTTTCCGGACCATGAATTAATACA 58.819 36.000 1.83 0.00 0.00 2.29
146 147 6.831353 TGTTTCCGGACCATGAATTAATACAT 59.169 34.615 1.83 0.00 0.00 2.29
147 148 7.993758 TGTTTCCGGACCATGAATTAATACATA 59.006 33.333 1.83 0.00 0.00 2.29
148 149 7.972832 TTCCGGACCATGAATTAATACATAC 57.027 36.000 1.83 0.00 0.00 2.39
149 150 7.068686 TCCGGACCATGAATTAATACATACA 57.931 36.000 0.00 0.00 0.00 2.29
150 151 6.932400 TCCGGACCATGAATTAATACATACAC 59.068 38.462 0.00 0.00 0.00 2.90
151 152 6.128661 CCGGACCATGAATTAATACATACACG 60.129 42.308 0.00 0.00 0.00 4.49
152 153 6.643360 CGGACCATGAATTAATACATACACGA 59.357 38.462 0.00 0.00 0.00 4.35
153 154 7.358931 CGGACCATGAATTAATACATACACGAC 60.359 40.741 0.00 0.00 0.00 4.34
154 155 7.358931 GGACCATGAATTAATACATACACGACG 60.359 40.741 0.00 0.00 0.00 5.12
155 156 6.982141 ACCATGAATTAATACATACACGACGT 59.018 34.615 0.00 0.00 0.00 4.34
156 157 7.493320 ACCATGAATTAATACATACACGACGTT 59.507 33.333 0.00 0.00 0.00 3.99
157 158 7.792048 CCATGAATTAATACATACACGACGTTG 59.208 37.037 0.00 0.00 0.00 4.10
158 159 6.698107 TGAATTAATACATACACGACGTTGC 58.302 36.000 1.65 0.00 0.00 4.17
159 160 6.532302 TGAATTAATACATACACGACGTTGCT 59.468 34.615 1.65 0.00 0.00 3.91
160 161 7.701501 TGAATTAATACATACACGACGTTGCTA 59.298 33.333 1.65 0.00 0.00 3.49
161 162 7.990541 ATTAATACATACACGACGTTGCTAA 57.009 32.000 1.65 0.00 0.00 3.09
162 163 7.990541 TTAATACATACACGACGTTGCTAAT 57.009 32.000 1.65 0.00 0.00 1.73
163 164 6.897259 AATACATACACGACGTTGCTAATT 57.103 33.333 1.65 0.00 0.00 1.40
164 165 4.577687 ACATACACGACGTTGCTAATTG 57.422 40.909 1.65 0.00 0.00 2.32
165 166 3.991773 ACATACACGACGTTGCTAATTGT 59.008 39.130 1.65 1.89 0.00 2.71
166 167 4.449743 ACATACACGACGTTGCTAATTGTT 59.550 37.500 1.65 0.00 0.00 2.83
167 168 3.955771 ACACGACGTTGCTAATTGTTT 57.044 38.095 1.65 0.00 0.00 2.83
168 169 4.281525 ACACGACGTTGCTAATTGTTTT 57.718 36.364 1.65 0.00 0.00 2.43
169 170 5.406767 ACACGACGTTGCTAATTGTTTTA 57.593 34.783 1.65 0.00 0.00 1.52
170 171 5.199726 ACACGACGTTGCTAATTGTTTTAC 58.800 37.500 1.65 0.00 0.00 2.01
171 172 5.006941 ACACGACGTTGCTAATTGTTTTACT 59.993 36.000 1.65 0.00 0.00 2.24
172 173 5.558888 CACGACGTTGCTAATTGTTTTACTC 59.441 40.000 1.65 0.00 0.00 2.59
173 174 5.234757 ACGACGTTGCTAATTGTTTTACTCA 59.765 36.000 1.65 0.00 0.00 3.41
174 175 6.130723 CGACGTTGCTAATTGTTTTACTCAA 58.869 36.000 0.00 0.00 0.00 3.02
175 176 6.795114 CGACGTTGCTAATTGTTTTACTCAAT 59.205 34.615 0.00 0.00 37.14 2.57
176 177 7.201149 CGACGTTGCTAATTGTTTTACTCAATG 60.201 37.037 0.00 0.00 35.95 2.82
177 178 7.422399 ACGTTGCTAATTGTTTTACTCAATGT 58.578 30.769 0.00 0.00 35.95 2.71
178 179 8.561212 ACGTTGCTAATTGTTTTACTCAATGTA 58.439 29.630 0.00 0.00 35.95 2.29
179 180 9.554724 CGTTGCTAATTGTTTTACTCAATGTAT 57.445 29.630 0.00 0.00 35.95 2.29
207 208 6.477053 ACTATGTCACATCTAAGCTCATGT 57.523 37.500 0.00 0.00 33.29 3.21
208 209 6.882656 ACTATGTCACATCTAAGCTCATGTT 58.117 36.000 0.00 0.00 30.48 2.71
209 210 6.760298 ACTATGTCACATCTAAGCTCATGTTG 59.240 38.462 0.00 1.79 30.48 3.33
210 211 4.898320 TGTCACATCTAAGCTCATGTTGT 58.102 39.130 3.70 0.00 30.48 3.32
211 212 4.692155 TGTCACATCTAAGCTCATGTTGTG 59.308 41.667 13.79 13.79 34.55 3.33
212 213 4.692625 GTCACATCTAAGCTCATGTTGTGT 59.307 41.667 16.89 3.69 34.73 3.72
213 214 4.931601 TCACATCTAAGCTCATGTTGTGTC 59.068 41.667 16.89 0.00 34.73 3.67
214 215 4.934001 CACATCTAAGCTCATGTTGTGTCT 59.066 41.667 12.62 0.00 30.48 3.41
215 216 5.410746 CACATCTAAGCTCATGTTGTGTCTT 59.589 40.000 12.62 0.00 30.48 3.01
216 217 6.591448 CACATCTAAGCTCATGTTGTGTCTTA 59.409 38.462 12.62 0.00 30.48 2.10
217 218 6.815641 ACATCTAAGCTCATGTTGTGTCTTAG 59.184 38.462 0.00 0.00 39.94 2.18
218 219 6.346477 TCTAAGCTCATGTTGTGTCTTAGT 57.654 37.500 0.00 0.00 39.77 2.24
219 220 6.759272 TCTAAGCTCATGTTGTGTCTTAGTT 58.241 36.000 0.00 0.00 39.77 2.24
220 221 7.217200 TCTAAGCTCATGTTGTGTCTTAGTTT 58.783 34.615 0.00 0.00 39.77 2.66
221 222 6.699575 AAGCTCATGTTGTGTCTTAGTTTT 57.300 33.333 0.00 0.00 0.00 2.43
222 223 6.699575 AGCTCATGTTGTGTCTTAGTTTTT 57.300 33.333 0.00 0.00 0.00 1.94
257 258 8.645730 TTTGTTGCTGCATTATATATTTGTGG 57.354 30.769 1.84 0.00 0.00 4.17
258 259 6.747125 TGTTGCTGCATTATATATTTGTGGG 58.253 36.000 1.84 0.00 0.00 4.61
259 260 6.548993 TGTTGCTGCATTATATATTTGTGGGA 59.451 34.615 1.84 0.00 0.00 4.37
260 261 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
261 262 5.183713 TGCTGCATTATATATTTGTGGGAGC 59.816 40.000 0.00 0.00 0.00 4.70
262 263 5.416952 GCTGCATTATATATTTGTGGGAGCT 59.583 40.000 0.00 0.00 0.00 4.09
263 264 6.071728 GCTGCATTATATATTTGTGGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
264 265 7.121168 GCTGCATTATATATTTGTGGGAGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
265 266 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
266 267 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
267 268 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
270 271 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
271 272 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
272 273 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
273 274 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
274 275 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
275 276 3.264193 TGTGGGAGCTTAGATGTGACATT 59.736 43.478 0.00 0.00 0.00 2.71
276 277 3.873952 GTGGGAGCTTAGATGTGACATTC 59.126 47.826 0.00 0.00 0.00 2.67
277 278 3.776969 TGGGAGCTTAGATGTGACATTCT 59.223 43.478 0.00 1.32 0.00 2.40
278 279 4.225942 TGGGAGCTTAGATGTGACATTCTT 59.774 41.667 0.00 0.00 0.00 2.52
279 280 5.425217 TGGGAGCTTAGATGTGACATTCTTA 59.575 40.000 0.00 0.00 0.00 2.10
280 281 6.070251 TGGGAGCTTAGATGTGACATTCTTAA 60.070 38.462 0.00 0.00 0.00 1.85
281 282 6.823689 GGGAGCTTAGATGTGACATTCTTAAA 59.176 38.462 0.00 0.00 0.00 1.52
282 283 7.336931 GGGAGCTTAGATGTGACATTCTTAAAA 59.663 37.037 0.00 0.00 0.00 1.52
283 284 8.730680 GGAGCTTAGATGTGACATTCTTAAAAA 58.269 33.333 0.00 0.00 0.00 1.94
319 320 9.836864 ATATGAATTAGACAAACTGTATGCTGA 57.163 29.630 0.00 0.00 0.00 4.26
320 321 8.743085 ATGAATTAGACAAACTGTATGCTGAT 57.257 30.769 0.00 0.00 0.00 2.90
321 322 9.836864 ATGAATTAGACAAACTGTATGCTGATA 57.163 29.630 0.00 0.00 0.00 2.15
322 323 9.098355 TGAATTAGACAAACTGTATGCTGATAC 57.902 33.333 0.00 0.00 35.83 2.24
323 324 9.319143 GAATTAGACAAACTGTATGCTGATACT 57.681 33.333 0.00 0.00 36.20 2.12
324 325 8.879342 ATTAGACAAACTGTATGCTGATACTC 57.121 34.615 0.00 0.00 36.20 2.59
325 326 6.537453 AGACAAACTGTATGCTGATACTCT 57.463 37.500 0.00 0.00 36.20 3.24
326 327 6.336566 AGACAAACTGTATGCTGATACTCTG 58.663 40.000 0.00 0.00 36.20 3.35
327 328 6.153510 AGACAAACTGTATGCTGATACTCTGA 59.846 38.462 0.00 0.00 36.20 3.27
328 329 6.701340 ACAAACTGTATGCTGATACTCTGAA 58.299 36.000 0.00 0.00 36.20 3.02
329 330 7.334090 ACAAACTGTATGCTGATACTCTGAAT 58.666 34.615 0.00 0.00 36.20 2.57
330 331 8.478066 ACAAACTGTATGCTGATACTCTGAATA 58.522 33.333 0.00 0.00 36.20 1.75
331 332 8.759641 CAAACTGTATGCTGATACTCTGAATAC 58.240 37.037 5.60 5.60 37.36 1.89
332 333 6.673106 ACTGTATGCTGATACTCTGAATACG 58.327 40.000 7.32 0.00 38.78 3.06
333 334 6.013842 TGTATGCTGATACTCTGAATACGG 57.986 41.667 7.32 0.00 38.78 4.02
334 335 4.527509 ATGCTGATACTCTGAATACGGG 57.472 45.455 0.00 0.00 0.00 5.28
335 336 2.035961 TGCTGATACTCTGAATACGGGC 59.964 50.000 0.00 0.00 0.00 6.13
336 337 2.610727 GCTGATACTCTGAATACGGGCC 60.611 54.545 0.00 0.00 0.00 5.80
337 338 2.628178 CTGATACTCTGAATACGGGCCA 59.372 50.000 4.39 0.00 0.00 5.36
338 339 3.035363 TGATACTCTGAATACGGGCCAA 58.965 45.455 4.39 0.00 0.00 4.52
339 340 2.973694 TACTCTGAATACGGGCCAAC 57.026 50.000 4.39 0.00 0.00 3.77
340 341 0.981183 ACTCTGAATACGGGCCAACA 59.019 50.000 4.39 0.00 0.00 3.33
341 342 1.559682 ACTCTGAATACGGGCCAACAT 59.440 47.619 4.39 0.00 0.00 2.71
342 343 2.026262 ACTCTGAATACGGGCCAACATT 60.026 45.455 4.39 0.00 0.00 2.71
343 344 2.355756 CTCTGAATACGGGCCAACATTG 59.644 50.000 4.39 0.00 0.00 2.82
344 345 2.026729 TCTGAATACGGGCCAACATTGA 60.027 45.455 4.39 0.00 0.00 2.57
345 346 2.355756 CTGAATACGGGCCAACATTGAG 59.644 50.000 4.39 0.00 0.00 3.02
346 347 1.065551 GAATACGGGCCAACATTGAGC 59.934 52.381 4.39 0.00 0.00 4.26
347 348 0.034574 ATACGGGCCAACATTGAGCA 60.035 50.000 4.39 0.00 0.00 4.26
348 349 0.250945 TACGGGCCAACATTGAGCAA 60.251 50.000 4.39 0.00 0.00 3.91
349 350 1.213537 CGGGCCAACATTGAGCAAG 59.786 57.895 4.39 0.00 0.00 4.01
350 351 1.526575 CGGGCCAACATTGAGCAAGT 61.527 55.000 4.39 0.00 0.00 3.16
351 352 1.544724 GGGCCAACATTGAGCAAGTA 58.455 50.000 4.39 0.00 0.00 2.24
352 353 1.202348 GGGCCAACATTGAGCAAGTAC 59.798 52.381 4.39 0.00 0.00 2.73
353 354 1.135689 GGCCAACATTGAGCAAGTACG 60.136 52.381 0.00 0.00 0.00 3.67
354 355 1.804151 GCCAACATTGAGCAAGTACGA 59.196 47.619 0.00 0.00 0.00 3.43
355 356 2.420022 GCCAACATTGAGCAAGTACGAT 59.580 45.455 0.00 0.00 0.00 3.73
356 357 3.485877 GCCAACATTGAGCAAGTACGATC 60.486 47.826 0.00 0.00 0.00 3.69
357 358 3.242091 CCAACATTGAGCAAGTACGATCG 60.242 47.826 14.88 14.88 0.00 3.69
358 359 3.503827 ACATTGAGCAAGTACGATCGA 57.496 42.857 24.34 2.23 0.00 3.59
359 360 3.179830 ACATTGAGCAAGTACGATCGAC 58.820 45.455 24.34 15.19 0.00 4.20
361 362 0.522705 TGAGCAAGTACGATCGACGC 60.523 55.000 24.34 15.34 46.94 5.19
362 363 1.201098 GAGCAAGTACGATCGACGCC 61.201 60.000 24.34 6.06 46.94 5.68
363 364 1.226603 GCAAGTACGATCGACGCCT 60.227 57.895 24.34 8.36 46.94 5.52
364 365 0.801067 GCAAGTACGATCGACGCCTT 60.801 55.000 24.34 13.78 46.94 4.35
365 366 0.914551 CAAGTACGATCGACGCCTTG 59.085 55.000 24.34 20.49 46.94 3.61
366 367 0.801067 AAGTACGATCGACGCCTTGC 60.801 55.000 24.34 1.14 46.94 4.01
367 368 1.226603 GTACGATCGACGCCTTGCT 60.227 57.895 24.34 0.00 46.94 3.91
368 369 0.028505 GTACGATCGACGCCTTGCTA 59.971 55.000 24.34 0.00 46.94 3.49
369 370 0.949397 TACGATCGACGCCTTGCTAT 59.051 50.000 24.34 0.00 46.94 2.97
370 371 0.102481 ACGATCGACGCCTTGCTATT 59.898 50.000 24.34 0.00 46.94 1.73
371 372 1.335810 ACGATCGACGCCTTGCTATTA 59.664 47.619 24.34 0.00 46.94 0.98
372 373 2.223641 ACGATCGACGCCTTGCTATTAA 60.224 45.455 24.34 0.00 46.94 1.40
373 374 2.405357 CGATCGACGCCTTGCTATTAAG 59.595 50.000 10.26 0.00 34.51 1.85
382 383 4.214980 CCTTGCTATTAAGGCACAATCG 57.785 45.455 5.55 0.00 40.67 3.34
383 384 3.548818 CCTTGCTATTAAGGCACAATCGC 60.549 47.826 5.55 0.00 40.67 4.58
392 393 2.080700 GCACAATCGCCAATTTGCC 58.919 52.632 0.00 0.00 31.11 4.52
393 394 0.669932 GCACAATCGCCAATTTGCCA 60.670 50.000 0.00 0.00 31.11 4.92
394 395 1.352114 CACAATCGCCAATTTGCCAG 58.648 50.000 0.00 0.00 0.00 4.85
395 396 0.968405 ACAATCGCCAATTTGCCAGT 59.032 45.000 0.00 0.00 0.00 4.00
396 397 1.337074 ACAATCGCCAATTTGCCAGTG 60.337 47.619 0.00 0.00 0.00 3.66
397 398 0.968405 AATCGCCAATTTGCCAGTGT 59.032 45.000 0.00 0.00 0.00 3.55
398 399 1.832883 ATCGCCAATTTGCCAGTGTA 58.167 45.000 0.00 0.00 0.00 2.90
399 400 1.164411 TCGCCAATTTGCCAGTGTAG 58.836 50.000 0.00 0.00 0.00 2.74
400 401 0.171007 CGCCAATTTGCCAGTGTAGG 59.829 55.000 0.00 0.00 0.00 3.18
401 402 1.544724 GCCAATTTGCCAGTGTAGGA 58.455 50.000 0.00 0.00 0.00 2.94
402 403 1.202348 GCCAATTTGCCAGTGTAGGAC 59.798 52.381 0.00 0.00 0.00 3.85
403 404 1.818674 CCAATTTGCCAGTGTAGGACC 59.181 52.381 0.00 0.00 0.00 4.46
404 405 1.468520 CAATTTGCCAGTGTAGGACCG 59.531 52.381 0.00 0.00 0.00 4.79
405 406 0.690762 ATTTGCCAGTGTAGGACCGT 59.309 50.000 0.00 0.00 0.00 4.83
406 407 0.250124 TTTGCCAGTGTAGGACCGTG 60.250 55.000 0.00 0.00 0.00 4.94
407 408 2.107041 TTGCCAGTGTAGGACCGTGG 62.107 60.000 0.00 0.00 0.00 4.94
408 409 2.978824 CCAGTGTAGGACCGTGGG 59.021 66.667 0.00 0.00 0.00 4.61
409 410 1.911766 CCAGTGTAGGACCGTGGGT 60.912 63.158 0.00 0.00 39.44 4.51
410 411 1.477685 CCAGTGTAGGACCGTGGGTT 61.478 60.000 0.00 0.00 35.25 4.11
411 412 1.259609 CAGTGTAGGACCGTGGGTTA 58.740 55.000 0.00 0.00 35.25 2.85
412 413 1.619827 CAGTGTAGGACCGTGGGTTAA 59.380 52.381 0.00 0.00 35.25 2.01
413 414 2.037511 CAGTGTAGGACCGTGGGTTAAA 59.962 50.000 0.00 0.00 35.25 1.52
414 415 2.301009 AGTGTAGGACCGTGGGTTAAAG 59.699 50.000 0.00 0.00 35.25 1.85
415 416 1.624813 TGTAGGACCGTGGGTTAAAGG 59.375 52.381 0.00 0.00 35.25 3.11
416 417 1.625315 GTAGGACCGTGGGTTAAAGGT 59.375 52.381 0.00 0.00 35.25 3.50
417 418 0.399075 AGGACCGTGGGTTAAAGGTG 59.601 55.000 0.00 0.00 35.25 4.00
418 419 1.239296 GGACCGTGGGTTAAAGGTGC 61.239 60.000 0.00 0.00 35.25 5.01
419 420 0.535553 GACCGTGGGTTAAAGGTGCA 60.536 55.000 0.00 0.00 35.25 4.57
420 421 0.106619 ACCGTGGGTTAAAGGTGCAA 60.107 50.000 0.00 0.00 35.36 4.08
421 422 1.253100 CCGTGGGTTAAAGGTGCAAT 58.747 50.000 0.00 0.00 0.00 3.56
422 423 1.067915 CCGTGGGTTAAAGGTGCAATG 60.068 52.381 0.00 0.00 0.00 2.82
423 424 1.668628 CGTGGGTTAAAGGTGCAATGC 60.669 52.381 0.00 0.00 0.00 3.56
424 425 1.618343 GTGGGTTAAAGGTGCAATGCT 59.382 47.619 6.82 0.00 0.00 3.79
425 426 1.617850 TGGGTTAAAGGTGCAATGCTG 59.382 47.619 6.82 0.00 0.00 4.41
426 427 1.892474 GGGTTAAAGGTGCAATGCTGA 59.108 47.619 6.82 0.00 0.00 4.26
427 428 2.094545 GGGTTAAAGGTGCAATGCTGAG 60.095 50.000 6.82 0.00 0.00 3.35
428 429 2.558359 GGTTAAAGGTGCAATGCTGAGT 59.442 45.455 6.82 0.00 0.00 3.41
429 430 3.756434 GGTTAAAGGTGCAATGCTGAGTA 59.244 43.478 6.82 0.00 0.00 2.59
430 431 4.142600 GGTTAAAGGTGCAATGCTGAGTAG 60.143 45.833 6.82 0.00 0.00 2.57
440 441 1.751563 GCTGAGTAGCCTGGATCCC 59.248 63.158 9.90 0.00 44.33 3.85
441 442 0.762461 GCTGAGTAGCCTGGATCCCT 60.762 60.000 9.90 1.33 44.33 4.20
442 443 1.337118 CTGAGTAGCCTGGATCCCTC 58.663 60.000 9.90 7.87 0.00 4.30
443 444 0.105453 TGAGTAGCCTGGATCCCTCC 60.105 60.000 9.90 0.00 42.45 4.30
444 445 1.152440 AGTAGCCTGGATCCCTCCG 60.152 63.158 9.90 0.00 45.37 4.63
445 446 2.524394 TAGCCTGGATCCCTCCGC 60.524 66.667 9.90 5.31 45.37 5.54
446 447 3.088090 TAGCCTGGATCCCTCCGCT 62.088 63.158 9.90 12.62 45.37 5.52
447 448 1.726192 TAGCCTGGATCCCTCCGCTA 61.726 60.000 9.90 11.62 45.37 4.26
448 449 2.873525 GCCTGGATCCCTCCGCTAC 61.874 68.421 9.90 0.00 45.37 3.58
449 450 2.565645 CCTGGATCCCTCCGCTACG 61.566 68.421 9.90 0.00 45.37 3.51
450 451 1.528542 CTGGATCCCTCCGCTACGA 60.529 63.158 9.90 0.00 45.37 3.43
451 452 1.076559 TGGATCCCTCCGCTACGAA 60.077 57.895 9.90 0.00 45.37 3.85
452 453 0.685131 TGGATCCCTCCGCTACGAAA 60.685 55.000 9.90 0.00 45.37 3.46
453 454 0.249363 GGATCCCTCCGCTACGAAAC 60.249 60.000 0.00 0.00 0.00 2.78
454 455 0.594284 GATCCCTCCGCTACGAAACG 60.594 60.000 0.00 0.00 0.00 3.60
455 456 1.033746 ATCCCTCCGCTACGAAACGA 61.034 55.000 0.00 0.00 0.00 3.85
456 457 1.515736 CCCTCCGCTACGAAACGAC 60.516 63.158 0.00 0.00 0.00 4.34
457 458 1.515736 CCTCCGCTACGAAACGACC 60.516 63.158 0.00 0.00 0.00 4.79
458 459 1.515736 CTCCGCTACGAAACGACCC 60.516 63.158 0.00 0.00 0.00 4.46
459 460 2.203972 CTCCGCTACGAAACGACCCA 62.204 60.000 0.00 0.00 0.00 4.51
460 461 2.090524 CCGCTACGAAACGACCCAC 61.091 63.158 0.00 0.00 0.00 4.61
461 462 1.372004 CGCTACGAAACGACCCACA 60.372 57.895 0.00 0.00 0.00 4.17
462 463 0.940519 CGCTACGAAACGACCCACAA 60.941 55.000 0.00 0.00 0.00 3.33
463 464 1.435577 GCTACGAAACGACCCACAAT 58.564 50.000 0.00 0.00 0.00 2.71
464 465 2.609350 GCTACGAAACGACCCACAATA 58.391 47.619 0.00 0.00 0.00 1.90
465 466 2.995258 GCTACGAAACGACCCACAATAA 59.005 45.455 0.00 0.00 0.00 1.40
466 467 3.061697 GCTACGAAACGACCCACAATAAG 59.938 47.826 0.00 0.00 0.00 1.73
467 468 1.802365 ACGAAACGACCCACAATAAGC 59.198 47.619 0.00 0.00 0.00 3.09
468 469 2.073816 CGAAACGACCCACAATAAGCT 58.926 47.619 0.00 0.00 0.00 3.74
469 470 2.159707 CGAAACGACCCACAATAAGCTG 60.160 50.000 0.00 0.00 0.00 4.24
470 471 1.165270 AACGACCCACAATAAGCTGC 58.835 50.000 0.00 0.00 0.00 5.25
471 472 1.019278 ACGACCCACAATAAGCTGCG 61.019 55.000 0.00 0.00 0.00 5.18
472 473 1.429423 GACCCACAATAAGCTGCGC 59.571 57.895 0.00 0.00 0.00 6.09
473 474 1.303236 ACCCACAATAAGCTGCGCA 60.303 52.632 10.98 10.98 0.00 6.09
474 475 0.893270 ACCCACAATAAGCTGCGCAA 60.893 50.000 13.05 0.00 0.00 4.85
475 476 0.456653 CCCACAATAAGCTGCGCAAC 60.457 55.000 13.05 7.27 0.00 4.17
476 477 0.523072 CCACAATAAGCTGCGCAACT 59.477 50.000 13.05 10.26 0.00 3.16
477 478 1.609932 CACAATAAGCTGCGCAACTG 58.390 50.000 15.11 5.12 0.00 3.16
478 479 1.197492 CACAATAAGCTGCGCAACTGA 59.803 47.619 15.11 7.30 0.00 3.41
479 480 1.197721 ACAATAAGCTGCGCAACTGAC 59.802 47.619 15.11 0.00 0.00 3.51
480 481 1.197492 CAATAAGCTGCGCAACTGACA 59.803 47.619 15.11 3.27 0.00 3.58
481 482 1.081892 ATAAGCTGCGCAACTGACAG 58.918 50.000 15.11 0.00 34.48 3.51
484 485 3.730761 CTGCGCAACTGACAGCCC 61.731 66.667 13.05 0.00 0.00 5.19
487 488 4.988598 CGCAACTGACAGCCCCGT 62.989 66.667 1.25 0.00 0.00 5.28
488 489 3.050275 GCAACTGACAGCCCCGTC 61.050 66.667 1.25 0.00 36.40 4.79
489 490 2.743718 CAACTGACAGCCCCGTCT 59.256 61.111 1.25 0.00 36.82 4.18
490 491 1.374758 CAACTGACAGCCCCGTCTC 60.375 63.158 1.25 0.00 36.82 3.36
491 492 1.837051 AACTGACAGCCCCGTCTCA 60.837 57.895 1.25 0.00 36.82 3.27
492 493 2.100879 AACTGACAGCCCCGTCTCAC 62.101 60.000 1.25 0.00 36.82 3.51
493 494 3.302347 CTGACAGCCCCGTCTCACC 62.302 68.421 0.00 0.00 36.82 4.02
494 495 3.311110 GACAGCCCCGTCTCACCA 61.311 66.667 0.00 0.00 32.92 4.17
495 496 2.847234 ACAGCCCCGTCTCACCAA 60.847 61.111 0.00 0.00 0.00 3.67
496 497 2.185310 GACAGCCCCGTCTCACCAAT 62.185 60.000 0.00 0.00 32.92 3.16
497 498 1.746615 CAGCCCCGTCTCACCAATG 60.747 63.158 0.00 0.00 0.00 2.82
498 499 2.224159 AGCCCCGTCTCACCAATGT 61.224 57.895 0.00 0.00 0.00 2.71
499 500 1.745489 GCCCCGTCTCACCAATGTC 60.745 63.158 0.00 0.00 0.00 3.06
500 501 1.447838 CCCCGTCTCACCAATGTCG 60.448 63.158 0.00 0.00 0.00 4.35
501 502 1.292223 CCCGTCTCACCAATGTCGT 59.708 57.895 0.00 0.00 0.00 4.34
507 508 3.410516 CACCAATGTCGTCGCGCA 61.411 61.111 8.75 0.00 0.00 6.09
543 544 3.305403 GCCAGGACTAAAAAGCCACTTTC 60.305 47.826 0.00 0.00 31.99 2.62
550 551 6.085555 ACTAAAAAGCCACTTTCCTAAAGC 57.914 37.500 0.00 0.00 42.27 3.51
551 552 5.596772 ACTAAAAAGCCACTTTCCTAAAGCA 59.403 36.000 0.00 0.00 42.27 3.91
576 577 1.209127 CAACCCAGCGGCTTTAACG 59.791 57.895 0.00 0.00 0.00 3.18
577 578 1.071814 AACCCAGCGGCTTTAACGA 59.928 52.632 0.00 0.00 0.00 3.85
586 587 2.661979 GCGGCTTTAACGACTTTCACTG 60.662 50.000 0.00 0.00 0.00 3.66
588 589 2.876550 GGCTTTAACGACTTTCACTGGT 59.123 45.455 0.00 0.00 0.00 4.00
731 733 3.288308 CTCTGCTGGCCGTTCGTCT 62.288 63.158 0.00 0.00 0.00 4.18
744 746 1.868987 TTCGTCTGCCGTCCGATCAA 61.869 55.000 0.00 0.00 37.94 2.57
765 767 2.896854 CACGGACGGCCATGATGG 60.897 66.667 8.76 7.21 41.55 3.51
900 919 1.661112 GAATCTCCGCAAGTGTACTGC 59.339 52.381 0.00 0.00 0.00 4.40
901 920 0.108138 ATCTCCGCAAGTGTACTGCC 60.108 55.000 0.00 0.00 0.00 4.85
902 921 2.048597 TCCGCAAGTGTACTGCCG 60.049 61.111 0.00 0.00 0.00 5.69
904 923 2.380410 CCGCAAGTGTACTGCCGTC 61.380 63.158 0.00 0.00 0.00 4.79
905 924 1.372997 CGCAAGTGTACTGCCGTCT 60.373 57.895 0.00 0.00 0.00 4.18
906 925 1.344942 CGCAAGTGTACTGCCGTCTC 61.345 60.000 0.00 0.00 0.00 3.36
907 926 1.014564 GCAAGTGTACTGCCGTCTCC 61.015 60.000 0.00 0.00 0.00 3.71
908 927 0.317160 CAAGTGTACTGCCGTCTCCA 59.683 55.000 0.00 0.00 0.00 3.86
909 928 0.317479 AAGTGTACTGCCGTCTCCAC 59.683 55.000 0.00 0.00 0.00 4.02
910 929 0.539901 AGTGTACTGCCGTCTCCACT 60.540 55.000 0.00 3.41 0.00 4.00
912 931 1.248785 TGTACTGCCGTCTCCACTCC 61.249 60.000 0.00 0.00 0.00 3.85
913 932 1.076014 TACTGCCGTCTCCACTCCA 59.924 57.895 0.00 0.00 0.00 3.86
915 934 3.302347 CTGCCGTCTCCACTCCACC 62.302 68.421 0.00 0.00 0.00 4.61
916 935 3.311110 GCCGTCTCCACTCCACCA 61.311 66.667 0.00 0.00 0.00 4.17
917 936 2.973899 CCGTCTCCACTCCACCAG 59.026 66.667 0.00 0.00 0.00 4.00
918 937 2.650116 CCGTCTCCACTCCACCAGG 61.650 68.421 0.00 0.00 0.00 4.45
990 1031 0.179111 ACGTGTGTGTGTGACAGAGG 60.179 55.000 0.00 0.00 39.13 3.69
991 1032 0.102300 CGTGTGTGTGTGACAGAGGA 59.898 55.000 0.00 0.00 36.14 3.71
992 1033 1.470805 CGTGTGTGTGTGACAGAGGAA 60.471 52.381 0.00 0.00 36.14 3.36
1016 1057 2.202623 GATGCCGTCGACGAAGCT 60.203 61.111 37.65 21.32 43.02 3.74
1527 1574 0.467474 TCTCCACGCAGGTCCGATAT 60.467 55.000 0.00 0.00 39.02 1.63
1539 1586 5.468592 CAGGTCCGATATCTTCTTCATCAG 58.531 45.833 0.34 0.00 0.00 2.90
1546 1593 6.077197 CGATATCTTCTTCATCAGTCTCGTC 58.923 44.000 0.34 0.00 0.00 4.20
1547 1594 6.073276 CGATATCTTCTTCATCAGTCTCGTCT 60.073 42.308 0.34 0.00 0.00 4.18
1571 1621 4.666412 TCAATTTCCTGGACCATGGTTA 57.334 40.909 20.85 10.69 0.00 2.85
1572 1622 5.004361 TCAATTTCCTGGACCATGGTTAA 57.996 39.130 20.85 9.59 0.00 2.01
1579 1631 3.541632 CTGGACCATGGTTAATTAGCGT 58.458 45.455 20.85 0.00 0.00 5.07
1605 1657 8.134261 TCATTCACAGAATCGAATGTTCAAAAA 58.866 29.630 10.85 0.00 45.64 1.94
1635 1687 8.633075 TTTTCAAGTTCTGTTGATCATTTGTC 57.367 30.769 0.00 0.00 36.34 3.18
1636 1688 6.940831 TCAAGTTCTGTTGATCATTTGTCA 57.059 33.333 0.00 0.00 31.31 3.58
1637 1689 7.332213 TCAAGTTCTGTTGATCATTTGTCAA 57.668 32.000 0.00 0.00 31.31 3.18
1647 1699 6.631971 TGATCATTTGTCAACAAGTTGCTA 57.368 33.333 8.04 0.00 40.24 3.49
1875 1927 2.271800 AGGAAAATCTTAGCGCGTCAG 58.728 47.619 8.43 0.96 0.00 3.51
1894 1946 2.173356 CAGTGAGAATCCATGGCCCTAA 59.827 50.000 6.96 0.00 0.00 2.69
1910 1962 3.826729 GCCCTAAGAATAATTGGCGGAAT 59.173 43.478 0.00 0.00 0.00 3.01
1956 2012 4.264253 CACCATGCCTCTAGTGAATTTCA 58.736 43.478 0.00 0.00 31.79 2.69
2034 2093 5.808540 TCGTGGACGTATATTCTCCAAAAAG 59.191 40.000 0.00 0.00 35.82 2.27
2130 2201 6.852853 GTCTGTGTTTTTACTCATGTGATGTG 59.147 38.462 0.94 0.00 0.00 3.21
2131 2202 6.765512 TCTGTGTTTTTACTCATGTGATGTGA 59.234 34.615 0.94 0.00 0.00 3.58
2132 2203 6.958255 TGTGTTTTTACTCATGTGATGTGAG 58.042 36.000 0.94 1.85 46.60 3.51
2150 2231 6.685527 TGTGAGTACATACAAAAGCAAACA 57.314 33.333 0.00 0.00 0.00 2.83
2151 2232 6.491394 TGTGAGTACATACAAAAGCAAACAC 58.509 36.000 0.00 0.00 0.00 3.32
2152 2233 6.317642 TGTGAGTACATACAAAAGCAAACACT 59.682 34.615 0.00 0.00 0.00 3.55
2153 2234 7.496263 TGTGAGTACATACAAAAGCAAACACTA 59.504 33.333 0.00 0.00 0.00 2.74
2154 2235 8.009974 GTGAGTACATACAAAAGCAAACACTAG 58.990 37.037 0.00 0.00 0.00 2.57
2155 2236 7.929245 TGAGTACATACAAAAGCAAACACTAGA 59.071 33.333 0.00 0.00 0.00 2.43
2156 2237 8.311650 AGTACATACAAAAGCAAACACTAGAG 57.688 34.615 0.00 0.00 0.00 2.43
2157 2238 8.148351 AGTACATACAAAAGCAAACACTAGAGA 58.852 33.333 0.00 0.00 0.00 3.10
2158 2239 7.801716 ACATACAAAAGCAAACACTAGAGAA 57.198 32.000 0.00 0.00 0.00 2.87
2159 2240 8.220755 ACATACAAAAGCAAACACTAGAGAAA 57.779 30.769 0.00 0.00 0.00 2.52
2160 2241 8.345565 ACATACAAAAGCAAACACTAGAGAAAG 58.654 33.333 0.00 0.00 0.00 2.62
2161 2242 6.759497 ACAAAAGCAAACACTAGAGAAAGT 57.241 33.333 0.00 0.00 0.00 2.66
2211 2292 5.424757 AGTGTACTGACTTGTGCAAAACTA 58.575 37.500 0.00 0.00 34.59 2.24
2290 2371 1.450312 CGAGATGTGGTGGCCTTCC 60.450 63.158 3.32 7.51 0.00 3.46
2323 2404 2.291670 GGTCTCCCTCTTCAGGTAGTGA 60.292 54.545 0.00 0.00 38.30 3.41
2324 2405 3.628769 GGTCTCCCTCTTCAGGTAGTGAT 60.629 52.174 0.00 0.00 38.30 3.06
2354 2435 0.459237 ACGCGAGGAAGATTCTGCAG 60.459 55.000 15.93 7.63 0.00 4.41
2356 2437 1.285578 GCGAGGAAGATTCTGCAGTC 58.714 55.000 14.67 4.77 0.00 3.51
2359 2440 2.354103 CGAGGAAGATTCTGCAGTCCAA 60.354 50.000 19.33 5.99 0.00 3.53
2390 2474 8.882415 TTTTCTCGAGAAAATACACTGTTAGT 57.118 30.769 37.30 0.00 45.76 2.24
2391 2475 8.882415 TTTCTCGAGAAAATACACTGTTAGTT 57.118 30.769 32.77 0.00 40.68 2.24
2392 2476 7.869016 TCTCGAGAAAATACACTGTTAGTTG 57.131 36.000 14.01 0.00 0.00 3.16
2393 2477 6.866770 TCTCGAGAAAATACACTGTTAGTTGG 59.133 38.462 14.01 0.00 0.00 3.77
2394 2478 6.518493 TCGAGAAAATACACTGTTAGTTGGT 58.482 36.000 0.00 0.00 0.00 3.67
2395 2479 6.422701 TCGAGAAAATACACTGTTAGTTGGTG 59.577 38.462 0.00 0.00 37.05 4.17
2396 2480 6.313744 AGAAAATACACTGTTAGTTGGTGC 57.686 37.500 0.00 0.00 34.70 5.01
2398 2482 7.221450 AGAAAATACACTGTTAGTTGGTGCTA 58.779 34.615 0.00 0.00 34.70 3.49
2399 2483 7.717875 AGAAAATACACTGTTAGTTGGTGCTAA 59.282 33.333 0.00 0.00 34.70 3.09
2400 2484 7.996098 AAATACACTGTTAGTTGGTGCTAAT 57.004 32.000 0.00 0.00 34.03 1.73
2401 2485 7.611213 AATACACTGTTAGTTGGTGCTAATC 57.389 36.000 0.00 0.00 34.03 1.75
2402 2486 4.968259 ACACTGTTAGTTGGTGCTAATCA 58.032 39.130 0.00 0.00 34.03 2.57
2404 2488 5.470098 ACACTGTTAGTTGGTGCTAATCAAG 59.530 40.000 0.00 0.00 34.03 3.02
3289 3379 4.624015 CACAAATGTGCATGGTTCTTCTT 58.376 39.130 0.00 0.00 39.39 2.52
3290 3380 4.446385 CACAAATGTGCATGGTTCTTCTTG 59.554 41.667 0.00 0.00 39.39 3.02
3291 3381 4.099881 ACAAATGTGCATGGTTCTTCTTGT 59.900 37.500 0.00 0.00 0.00 3.16
3292 3382 4.942761 AATGTGCATGGTTCTTCTTGTT 57.057 36.364 0.00 0.00 0.00 2.83
3294 3384 3.554934 TGTGCATGGTTCTTCTTGTTCT 58.445 40.909 0.00 0.00 0.00 3.01
3295 3385 3.953612 TGTGCATGGTTCTTCTTGTTCTT 59.046 39.130 0.00 0.00 0.00 2.52
3296 3386 4.036734 TGTGCATGGTTCTTCTTGTTCTTC 59.963 41.667 0.00 0.00 0.00 2.87
3297 3387 4.036734 GTGCATGGTTCTTCTTGTTCTTCA 59.963 41.667 0.00 0.00 0.00 3.02
3298 3388 4.276678 TGCATGGTTCTTCTTGTTCTTCAG 59.723 41.667 0.00 0.00 0.00 3.02
3299 3389 4.276926 GCATGGTTCTTCTTGTTCTTCAGT 59.723 41.667 0.00 0.00 0.00 3.41
3300 3390 5.755813 CATGGTTCTTCTTGTTCTTCAGTG 58.244 41.667 0.00 0.00 0.00 3.66
3301 3391 4.843728 TGGTTCTTCTTGTTCTTCAGTGT 58.156 39.130 0.00 0.00 0.00 3.55
3302 3392 4.876107 TGGTTCTTCTTGTTCTTCAGTGTC 59.124 41.667 0.00 0.00 0.00 3.67
3304 3394 5.007136 GGTTCTTCTTGTTCTTCAGTGTCTG 59.993 44.000 0.00 0.00 0.00 3.51
3554 3670 3.688185 GGTACGTGACACTGACAGAGATA 59.312 47.826 10.08 0.00 0.00 1.98
3576 3692 1.942776 TCTCTCAGCCTCCACAATGA 58.057 50.000 0.00 0.00 0.00 2.57
3619 3742 3.348967 CTAACCGACGTGCGCTTGC 62.349 63.158 9.73 0.00 39.11 4.01
3667 3790 4.947147 GGCGTGGTGAACCTGGCA 62.947 66.667 14.39 0.00 37.51 4.92
3856 3979 2.542907 GGTGTGGCTGTTCGTGGTG 61.543 63.158 0.00 0.00 0.00 4.17
4248 4371 2.266055 CCCGGTCTTCTGAGCACC 59.734 66.667 0.00 0.00 40.44 5.01
4249 4372 2.583441 CCCGGTCTTCTGAGCACCA 61.583 63.158 0.00 0.00 40.44 4.17
4250 4373 1.371183 CCGGTCTTCTGAGCACCAA 59.629 57.895 0.00 0.00 40.44 3.67
4251 4374 0.951040 CCGGTCTTCTGAGCACCAAC 60.951 60.000 0.00 0.00 40.44 3.77
4252 4375 0.034059 CGGTCTTCTGAGCACCAACT 59.966 55.000 7.61 0.00 40.44 3.16
4253 4376 1.272490 CGGTCTTCTGAGCACCAACTA 59.728 52.381 7.61 0.00 40.44 2.24
4322 4445 0.248498 GCGATCGTCGTCTGGATTGA 60.248 55.000 17.81 0.00 42.81 2.57
4471 4603 7.881643 AAATCATCGCTCTGAATATACTCAC 57.118 36.000 0.00 0.00 0.00 3.51
4553 4685 3.698040 AGTAGCAAGCAAATCAATCCCAG 59.302 43.478 0.00 0.00 0.00 4.45
4674 4823 2.930562 GAGGGAGGCACCTGTGGT 60.931 66.667 5.43 0.00 42.10 4.16
4675 4824 2.930562 AGGGAGGCACCTGTGGTC 60.931 66.667 0.00 0.00 40.04 4.02
4676 4825 3.249189 GGGAGGCACCTGTGGTCA 61.249 66.667 0.00 0.00 38.98 4.02
4796 4949 2.045131 GGCCGTCGTCTCTGTACCT 61.045 63.158 0.00 0.00 0.00 3.08
4797 4950 1.428620 GCCGTCGTCTCTGTACCTC 59.571 63.158 0.00 0.00 0.00 3.85
4839 4992 1.315257 GCGCAATGTCCATCCCTGTT 61.315 55.000 0.30 0.00 0.00 3.16
4851 5004 3.264450 CCATCCCTGTTAGAACTCCTTGT 59.736 47.826 0.00 0.00 0.00 3.16
4908 5061 0.253113 TCATGTCCTCCCCCATGTCA 60.253 55.000 0.00 0.00 39.53 3.58
4941 5094 2.432300 CCTCGCCCTCCCGTACATT 61.432 63.158 0.00 0.00 0.00 2.71
4942 5095 1.227263 CTCGCCCTCCCGTACATTG 60.227 63.158 0.00 0.00 0.00 2.82
4995 5154 0.248661 CGTACATGGCTGAGGAGTCG 60.249 60.000 0.00 0.00 0.00 4.18
5046 5205 1.557269 GGATCATCTCCCCCATCCCG 61.557 65.000 0.00 0.00 38.19 5.14
5082 5241 1.212616 CGATCTTCAGGGCGAATGTC 58.787 55.000 0.00 0.00 31.69 3.06
5157 5316 0.531532 CCACCTGGATCAGATCGCAC 60.532 60.000 0.00 0.00 37.39 5.34
5241 5400 2.635787 ATCGCATGCCAGGCAGGATT 62.636 55.000 30.35 10.06 43.36 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.749280 TGCTTGACGTGTCTGATGAT 57.251 45.000 0.00 0.00 0.00 2.45
3 4 2.340337 CATGCTTGACGTGTCTGATGA 58.660 47.619 0.00 0.00 0.00 2.92
5 6 1.081892 GCATGCTTGACGTGTCTGAT 58.918 50.000 11.37 0.00 37.62 2.90
6 7 0.950555 GGCATGCTTGACGTGTCTGA 60.951 55.000 18.92 0.00 36.92 3.27
7 8 1.229975 TGGCATGCTTGACGTGTCTG 61.230 55.000 18.92 0.00 40.75 3.51
8 9 0.534877 TTGGCATGCTTGACGTGTCT 60.535 50.000 18.92 0.00 40.75 3.41
10 11 0.743688 TTTTGGCATGCTTGACGTGT 59.256 45.000 18.92 0.00 37.62 4.49
12 13 1.408702 AGTTTTTGGCATGCTTGACGT 59.591 42.857 18.92 0.00 31.31 4.34
14 15 4.084380 GCTAAAGTTTTTGGCATGCTTGAC 60.084 41.667 18.92 9.52 0.00 3.18
15 16 4.057432 GCTAAAGTTTTTGGCATGCTTGA 58.943 39.130 18.92 0.50 0.00 3.02
16 17 3.187022 GGCTAAAGTTTTTGGCATGCTTG 59.813 43.478 18.92 0.00 38.10 4.01
17 18 3.402110 GGCTAAAGTTTTTGGCATGCTT 58.598 40.909 18.92 3.61 38.10 3.91
18 19 2.610232 CGGCTAAAGTTTTTGGCATGCT 60.610 45.455 18.92 0.00 38.09 3.79
19 20 1.726248 CGGCTAAAGTTTTTGGCATGC 59.274 47.619 9.90 9.90 38.09 4.06
20 21 2.336667 CCGGCTAAAGTTTTTGGCATG 58.663 47.619 11.16 0.00 38.09 4.06
21 22 1.275010 CCCGGCTAAAGTTTTTGGCAT 59.725 47.619 11.16 0.00 38.09 4.40
22 23 0.676736 CCCGGCTAAAGTTTTTGGCA 59.323 50.000 11.16 0.00 38.09 4.92
23 24 0.963225 TCCCGGCTAAAGTTTTTGGC 59.037 50.000 0.00 1.80 35.71 4.52
24 25 1.068816 CGTCCCGGCTAAAGTTTTTGG 60.069 52.381 0.00 0.00 0.00 3.28
25 26 1.664874 GCGTCCCGGCTAAAGTTTTTG 60.665 52.381 0.00 0.00 0.00 2.44
26 27 0.594602 GCGTCCCGGCTAAAGTTTTT 59.405 50.000 0.00 0.00 0.00 1.94
27 28 0.250597 AGCGTCCCGGCTAAAGTTTT 60.251 50.000 0.00 0.00 42.62 2.43
28 29 0.250597 AAGCGTCCCGGCTAAAGTTT 60.251 50.000 0.00 0.00 43.93 2.66
29 30 0.250597 AAAGCGTCCCGGCTAAAGTT 60.251 50.000 0.00 0.00 43.93 2.66
30 31 0.250597 AAAAGCGTCCCGGCTAAAGT 60.251 50.000 0.00 0.00 43.93 2.66
31 32 0.168128 CAAAAGCGTCCCGGCTAAAG 59.832 55.000 0.00 0.00 43.93 1.85
32 33 0.250381 TCAAAAGCGTCCCGGCTAAA 60.250 50.000 0.00 0.00 43.93 1.85
33 34 0.952010 GTCAAAAGCGTCCCGGCTAA 60.952 55.000 0.00 0.00 43.93 3.09
34 35 1.375013 GTCAAAAGCGTCCCGGCTA 60.375 57.895 0.00 0.00 43.93 3.93
36 37 4.084888 CGTCAAAAGCGTCCCGGC 62.085 66.667 0.00 0.00 0.00 6.13
37 38 2.356553 TCGTCAAAAGCGTCCCGG 60.357 61.111 0.00 0.00 0.00 5.73
38 39 1.952133 TGTCGTCAAAAGCGTCCCG 60.952 57.895 0.00 0.00 0.00 5.14
39 40 1.568025 GTGTCGTCAAAAGCGTCCC 59.432 57.895 0.00 0.00 0.00 4.46
40 41 0.878961 AGGTGTCGTCAAAAGCGTCC 60.879 55.000 0.00 0.00 0.00 4.79
41 42 0.232303 CAGGTGTCGTCAAAAGCGTC 59.768 55.000 0.00 0.00 0.00 5.19
42 43 0.179094 TCAGGTGTCGTCAAAAGCGT 60.179 50.000 0.00 0.00 0.00 5.07
43 44 1.148310 ATCAGGTGTCGTCAAAAGCG 58.852 50.000 0.00 0.00 0.00 4.68
44 45 2.095718 GGAATCAGGTGTCGTCAAAAGC 60.096 50.000 0.00 0.00 0.00 3.51
45 46 2.484264 GGGAATCAGGTGTCGTCAAAAG 59.516 50.000 0.00 0.00 0.00 2.27
46 47 2.500229 GGGAATCAGGTGTCGTCAAAA 58.500 47.619 0.00 0.00 0.00 2.44
47 48 1.606994 CGGGAATCAGGTGTCGTCAAA 60.607 52.381 0.00 0.00 0.00 2.69
48 49 0.037697 CGGGAATCAGGTGTCGTCAA 60.038 55.000 0.00 0.00 0.00 3.18
49 50 1.589630 CGGGAATCAGGTGTCGTCA 59.410 57.895 0.00 0.00 0.00 4.35
50 51 1.810030 GCGGGAATCAGGTGTCGTC 60.810 63.158 0.00 0.00 0.00 4.20
51 52 2.227089 GAGCGGGAATCAGGTGTCGT 62.227 60.000 0.00 0.00 0.00 4.34
52 53 1.519455 GAGCGGGAATCAGGTGTCG 60.519 63.158 0.00 0.00 0.00 4.35
53 54 0.036388 TTGAGCGGGAATCAGGTGTC 60.036 55.000 0.00 0.00 0.00 3.67
54 55 0.620556 ATTGAGCGGGAATCAGGTGT 59.379 50.000 0.00 0.00 0.00 4.16
55 56 1.019673 CATTGAGCGGGAATCAGGTG 58.980 55.000 0.00 0.00 0.00 4.00
56 57 0.749454 GCATTGAGCGGGAATCAGGT 60.749 55.000 0.00 0.00 0.00 4.00
57 58 2.028130 GCATTGAGCGGGAATCAGG 58.972 57.895 0.00 0.00 0.00 3.86
67 68 2.084546 ACGAAACCTTAGGCATTGAGC 58.915 47.619 0.00 0.00 44.65 4.26
68 69 3.600388 AGACGAAACCTTAGGCATTGAG 58.400 45.455 0.00 0.00 0.00 3.02
69 70 3.596214 GAGACGAAACCTTAGGCATTGA 58.404 45.455 0.00 0.00 0.00 2.57
70 71 2.348666 CGAGACGAAACCTTAGGCATTG 59.651 50.000 0.00 0.00 0.00 2.82
71 72 2.232941 TCGAGACGAAACCTTAGGCATT 59.767 45.455 0.00 0.00 31.06 3.56
72 73 1.822990 TCGAGACGAAACCTTAGGCAT 59.177 47.619 0.00 0.00 31.06 4.40
73 74 1.250328 TCGAGACGAAACCTTAGGCA 58.750 50.000 0.00 0.00 31.06 4.75
74 75 2.358939 TTCGAGACGAAACCTTAGGC 57.641 50.000 0.00 0.00 43.00 3.93
89 90 7.046292 TCAGTTCCCTCGATAAATAATTCGA 57.954 36.000 0.00 0.00 41.70 3.71
90 91 7.385205 ACATCAGTTCCCTCGATAAATAATTCG 59.615 37.037 0.00 0.00 36.72 3.34
91 92 8.608844 ACATCAGTTCCCTCGATAAATAATTC 57.391 34.615 0.00 0.00 0.00 2.17
92 93 8.980481 AACATCAGTTCCCTCGATAAATAATT 57.020 30.769 0.00 0.00 30.46 1.40
93 94 8.608844 GAACATCAGTTCCCTCGATAAATAAT 57.391 34.615 0.00 0.00 46.68 1.28
108 109 2.504367 CGGAAACAGGGAACATCAGTT 58.496 47.619 0.00 0.00 41.64 3.16
109 110 1.271379 CCGGAAACAGGGAACATCAGT 60.271 52.381 0.00 0.00 0.00 3.41
110 111 1.003118 TCCGGAAACAGGGAACATCAG 59.997 52.381 0.00 0.00 0.00 2.90
111 112 1.060729 TCCGGAAACAGGGAACATCA 58.939 50.000 0.00 0.00 0.00 3.07
112 113 1.450025 GTCCGGAAACAGGGAACATC 58.550 55.000 5.23 0.00 33.27 3.06
113 114 0.037734 GGTCCGGAAACAGGGAACAT 59.962 55.000 5.23 0.00 39.89 2.71
114 115 1.452801 GGTCCGGAAACAGGGAACA 59.547 57.895 5.23 0.00 39.89 3.18
115 116 0.037734 ATGGTCCGGAAACAGGGAAC 59.962 55.000 5.23 0.00 40.56 3.62
116 117 0.037590 CATGGTCCGGAAACAGGGAA 59.962 55.000 5.23 0.00 33.27 3.97
117 118 0.838554 TCATGGTCCGGAAACAGGGA 60.839 55.000 18.36 13.58 0.00 4.20
118 119 0.037590 TTCATGGTCCGGAAACAGGG 59.962 55.000 18.36 11.89 0.00 4.45
119 120 2.128771 ATTCATGGTCCGGAAACAGG 57.871 50.000 5.23 11.00 0.00 4.00
120 121 5.835113 ATTAATTCATGGTCCGGAAACAG 57.165 39.130 5.23 3.33 0.00 3.16
121 122 6.181190 TGTATTAATTCATGGTCCGGAAACA 58.819 36.000 5.23 9.51 0.00 2.83
122 123 6.687081 TGTATTAATTCATGGTCCGGAAAC 57.313 37.500 5.23 2.37 0.00 2.78
123 124 7.993758 TGTATGTATTAATTCATGGTCCGGAAA 59.006 33.333 5.23 0.00 0.00 3.13
124 125 7.442969 GTGTATGTATTAATTCATGGTCCGGAA 59.557 37.037 5.23 0.00 0.00 4.30
125 126 6.932400 GTGTATGTATTAATTCATGGTCCGGA 59.068 38.462 15.58 0.00 0.00 5.14
126 127 6.128661 CGTGTATGTATTAATTCATGGTCCGG 60.129 42.308 15.58 0.00 0.00 5.14
127 128 6.643360 TCGTGTATGTATTAATTCATGGTCCG 59.357 38.462 15.58 12.15 0.00 4.79
128 129 7.358931 CGTCGTGTATGTATTAATTCATGGTCC 60.359 40.741 15.58 4.27 0.00 4.46
129 130 7.168637 ACGTCGTGTATGTATTAATTCATGGTC 59.831 37.037 15.58 8.14 0.00 4.02
130 131 6.982141 ACGTCGTGTATGTATTAATTCATGGT 59.018 34.615 15.58 0.00 0.00 3.55
131 132 7.402811 ACGTCGTGTATGTATTAATTCATGG 57.597 36.000 15.58 4.98 0.00 3.66
132 133 7.317970 GCAACGTCGTGTATGTATTAATTCATG 59.682 37.037 15.58 1.94 0.00 3.07
133 134 7.223971 AGCAACGTCGTGTATGTATTAATTCAT 59.776 33.333 11.69 11.69 0.00 2.57
134 135 6.532302 AGCAACGTCGTGTATGTATTAATTCA 59.468 34.615 0.00 0.00 0.00 2.57
135 136 6.929896 AGCAACGTCGTGTATGTATTAATTC 58.070 36.000 0.00 0.00 0.00 2.17
136 137 6.897259 AGCAACGTCGTGTATGTATTAATT 57.103 33.333 0.00 0.00 0.00 1.40
137 138 7.990541 TTAGCAACGTCGTGTATGTATTAAT 57.009 32.000 0.00 0.00 0.00 1.40
138 139 7.990541 ATTAGCAACGTCGTGTATGTATTAA 57.009 32.000 0.00 0.00 0.00 1.40
139 140 7.488792 ACAATTAGCAACGTCGTGTATGTATTA 59.511 33.333 0.00 0.00 0.00 0.98
140 141 6.311935 ACAATTAGCAACGTCGTGTATGTATT 59.688 34.615 0.00 0.00 0.00 1.89
141 142 5.808540 ACAATTAGCAACGTCGTGTATGTAT 59.191 36.000 0.00 0.00 0.00 2.29
142 143 5.162794 ACAATTAGCAACGTCGTGTATGTA 58.837 37.500 0.00 0.00 0.00 2.29
143 144 3.991773 ACAATTAGCAACGTCGTGTATGT 59.008 39.130 0.00 0.00 0.00 2.29
144 145 4.577687 ACAATTAGCAACGTCGTGTATG 57.422 40.909 0.00 0.00 0.00 2.39
145 146 5.600908 AAACAATTAGCAACGTCGTGTAT 57.399 34.783 0.00 0.00 0.00 2.29
146 147 5.406767 AAAACAATTAGCAACGTCGTGTA 57.593 34.783 0.00 0.00 0.00 2.90
147 148 3.955771 AAACAATTAGCAACGTCGTGT 57.044 38.095 0.00 0.00 0.00 4.49
148 149 5.437263 AGTAAAACAATTAGCAACGTCGTG 58.563 37.500 0.00 0.00 0.00 4.35
149 150 5.234757 TGAGTAAAACAATTAGCAACGTCGT 59.765 36.000 0.00 0.00 0.00 4.34
150 151 5.672051 TGAGTAAAACAATTAGCAACGTCG 58.328 37.500 0.00 0.00 0.00 5.12
151 152 7.589954 ACATTGAGTAAAACAATTAGCAACGTC 59.410 33.333 0.00 0.00 36.07 4.34
152 153 7.422399 ACATTGAGTAAAACAATTAGCAACGT 58.578 30.769 0.00 0.00 36.07 3.99
153 154 7.851822 ACATTGAGTAAAACAATTAGCAACG 57.148 32.000 0.00 0.00 36.07 4.10
181 182 9.301897 ACATGAGCTTAGATGTGACATAGTATA 57.698 33.333 0.00 0.00 31.47 1.47
182 183 8.187913 ACATGAGCTTAGATGTGACATAGTAT 57.812 34.615 0.00 0.00 31.47 2.12
183 184 7.588497 ACATGAGCTTAGATGTGACATAGTA 57.412 36.000 0.00 0.00 31.47 1.82
184 185 6.477053 ACATGAGCTTAGATGTGACATAGT 57.523 37.500 0.00 0.00 31.47 2.12
185 186 6.760298 ACAACATGAGCTTAGATGTGACATAG 59.240 38.462 0.00 0.00 33.03 2.23
186 187 6.536224 CACAACATGAGCTTAGATGTGACATA 59.464 38.462 14.77 0.00 39.10 2.29
187 188 5.353400 CACAACATGAGCTTAGATGTGACAT 59.647 40.000 14.77 0.00 39.10 3.06
188 189 4.692155 CACAACATGAGCTTAGATGTGACA 59.308 41.667 14.77 0.00 39.10 3.58
189 190 4.692625 ACACAACATGAGCTTAGATGTGAC 59.307 41.667 22.03 0.00 39.10 3.67
190 191 4.898320 ACACAACATGAGCTTAGATGTGA 58.102 39.130 22.03 0.00 39.10 3.58
191 192 4.934001 AGACACAACATGAGCTTAGATGTG 59.066 41.667 16.92 16.92 41.69 3.21
192 193 5.157940 AGACACAACATGAGCTTAGATGT 57.842 39.130 0.00 0.00 34.16 3.06
193 194 6.815641 ACTAAGACACAACATGAGCTTAGATG 59.184 38.462 18.75 0.00 42.68 2.90
194 195 6.940739 ACTAAGACACAACATGAGCTTAGAT 58.059 36.000 18.75 0.00 42.68 1.98
195 196 6.346477 ACTAAGACACAACATGAGCTTAGA 57.654 37.500 18.75 0.00 42.68 2.10
196 197 7.426929 AAACTAAGACACAACATGAGCTTAG 57.573 36.000 0.00 0.00 43.96 2.18
197 198 7.801716 AAAACTAAGACACAACATGAGCTTA 57.198 32.000 0.00 0.00 31.86 3.09
198 199 6.699575 AAAACTAAGACACAACATGAGCTT 57.300 33.333 0.00 0.00 33.30 3.74
199 200 6.699575 AAAAACTAAGACACAACATGAGCT 57.300 33.333 0.00 0.00 0.00 4.09
231 232 9.096160 CCACAAATATATAATGCAGCAACAAAA 57.904 29.630 0.00 0.00 0.00 2.44
232 233 7.710044 CCCACAAATATATAATGCAGCAACAAA 59.290 33.333 0.00 0.00 0.00 2.83
233 234 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
234 235 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
235 236 6.980593 TCCCACAAATATATAATGCAGCAAC 58.019 36.000 0.00 0.00 0.00 4.17
236 237 6.294675 GCTCCCACAAATATATAATGCAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
237 238 5.183713 GCTCCCACAAATATATAATGCAGCA 59.816 40.000 0.00 0.00 0.00 4.41
238 239 5.416952 AGCTCCCACAAATATATAATGCAGC 59.583 40.000 0.00 0.00 0.00 5.25
239 240 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
240 241 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
241 242 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
244 245 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
245 246 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
246 247 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
247 248 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
248 249 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
249 250 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
250 251 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
251 252 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
252 253 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
253 254 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
254 255 3.550437 ATGTCACATCTAAGCTCCCAC 57.450 47.619 0.00 0.00 0.00 4.61
255 256 3.776969 AGAATGTCACATCTAAGCTCCCA 59.223 43.478 0.00 0.00 0.00 4.37
256 257 4.414337 AGAATGTCACATCTAAGCTCCC 57.586 45.455 0.00 0.00 0.00 4.30
257 258 7.849804 TTTAAGAATGTCACATCTAAGCTCC 57.150 36.000 0.00 0.00 0.00 4.70
293 294 9.836864 TCAGCATACAGTTTGTCTAATTCATAT 57.163 29.630 0.00 0.00 0.00 1.78
294 295 9.836864 ATCAGCATACAGTTTGTCTAATTCATA 57.163 29.630 0.00 0.00 0.00 2.15
295 296 8.743085 ATCAGCATACAGTTTGTCTAATTCAT 57.257 30.769 0.00 0.00 0.00 2.57
296 297 9.098355 GTATCAGCATACAGTTTGTCTAATTCA 57.902 33.333 0.00 0.00 35.75 2.57
297 298 9.319143 AGTATCAGCATACAGTTTGTCTAATTC 57.681 33.333 0.00 0.00 37.89 2.17
298 299 9.319143 GAGTATCAGCATACAGTTTGTCTAATT 57.681 33.333 0.00 0.00 37.89 1.40
299 300 8.700051 AGAGTATCAGCATACAGTTTGTCTAAT 58.300 33.333 0.00 0.00 37.89 1.73
300 301 7.976175 CAGAGTATCAGCATACAGTTTGTCTAA 59.024 37.037 0.00 0.00 37.89 2.10
301 302 7.339466 TCAGAGTATCAGCATACAGTTTGTCTA 59.661 37.037 0.00 0.00 37.89 2.59
302 303 6.153510 TCAGAGTATCAGCATACAGTTTGTCT 59.846 38.462 0.00 0.00 37.89 3.41
303 304 6.333416 TCAGAGTATCAGCATACAGTTTGTC 58.667 40.000 0.00 0.00 37.89 3.18
304 305 6.286240 TCAGAGTATCAGCATACAGTTTGT 57.714 37.500 0.00 0.00 37.89 2.83
305 306 7.783090 ATTCAGAGTATCAGCATACAGTTTG 57.217 36.000 0.00 0.00 37.89 2.93
306 307 7.649705 CGTATTCAGAGTATCAGCATACAGTTT 59.350 37.037 0.00 0.00 37.89 2.66
307 308 7.142021 CGTATTCAGAGTATCAGCATACAGTT 58.858 38.462 0.00 0.00 37.89 3.16
308 309 6.294231 CCGTATTCAGAGTATCAGCATACAGT 60.294 42.308 0.00 0.00 37.89 3.55
309 310 6.089476 CCGTATTCAGAGTATCAGCATACAG 58.911 44.000 0.00 0.00 37.89 2.74
310 311 5.048013 CCCGTATTCAGAGTATCAGCATACA 60.048 44.000 0.00 0.00 37.89 2.29
311 312 5.403246 CCCGTATTCAGAGTATCAGCATAC 58.597 45.833 0.00 0.00 37.82 2.39
312 313 4.082190 GCCCGTATTCAGAGTATCAGCATA 60.082 45.833 0.00 0.00 37.82 3.14
313 314 3.306364 GCCCGTATTCAGAGTATCAGCAT 60.306 47.826 0.00 0.00 37.82 3.79
314 315 2.035961 GCCCGTATTCAGAGTATCAGCA 59.964 50.000 0.00 0.00 37.82 4.41
315 316 2.610727 GGCCCGTATTCAGAGTATCAGC 60.611 54.545 0.00 0.00 37.82 4.26
316 317 2.628178 TGGCCCGTATTCAGAGTATCAG 59.372 50.000 0.00 0.00 37.82 2.90
317 318 2.673258 TGGCCCGTATTCAGAGTATCA 58.327 47.619 0.00 0.00 37.82 2.15
318 319 3.181469 TGTTGGCCCGTATTCAGAGTATC 60.181 47.826 0.00 0.00 0.00 2.24
319 320 2.769663 TGTTGGCCCGTATTCAGAGTAT 59.230 45.455 0.00 0.00 0.00 2.12
320 321 2.181125 TGTTGGCCCGTATTCAGAGTA 58.819 47.619 0.00 0.00 0.00 2.59
321 322 0.981183 TGTTGGCCCGTATTCAGAGT 59.019 50.000 0.00 0.00 0.00 3.24
322 323 2.332063 ATGTTGGCCCGTATTCAGAG 57.668 50.000 0.00 0.00 0.00 3.35
323 324 2.026729 TCAATGTTGGCCCGTATTCAGA 60.027 45.455 0.00 0.00 0.00 3.27
324 325 2.355756 CTCAATGTTGGCCCGTATTCAG 59.644 50.000 0.00 0.00 0.00 3.02
325 326 2.364632 CTCAATGTTGGCCCGTATTCA 58.635 47.619 0.00 0.00 0.00 2.57
326 327 1.065551 GCTCAATGTTGGCCCGTATTC 59.934 52.381 0.00 0.00 0.00 1.75
327 328 1.102978 GCTCAATGTTGGCCCGTATT 58.897 50.000 0.00 0.00 0.00 1.89
328 329 0.034574 TGCTCAATGTTGGCCCGTAT 60.035 50.000 0.00 0.00 0.00 3.06
329 330 0.250945 TTGCTCAATGTTGGCCCGTA 60.251 50.000 0.00 0.00 0.00 4.02
330 331 1.526575 CTTGCTCAATGTTGGCCCGT 61.527 55.000 0.00 0.00 0.00 5.28
331 332 1.213537 CTTGCTCAATGTTGGCCCG 59.786 57.895 0.00 0.00 0.00 6.13
332 333 1.202348 GTACTTGCTCAATGTTGGCCC 59.798 52.381 0.00 0.00 0.00 5.80
333 334 1.135689 CGTACTTGCTCAATGTTGGCC 60.136 52.381 0.00 0.00 0.00 5.36
334 335 1.804151 TCGTACTTGCTCAATGTTGGC 59.196 47.619 0.00 0.00 0.00 4.52
335 336 3.242091 CGATCGTACTTGCTCAATGTTGG 60.242 47.826 7.03 0.00 0.00 3.77
336 337 3.612423 TCGATCGTACTTGCTCAATGTTG 59.388 43.478 15.94 0.00 0.00 3.33
337 338 3.612860 GTCGATCGTACTTGCTCAATGTT 59.387 43.478 15.94 0.00 0.00 2.71
338 339 3.179830 GTCGATCGTACTTGCTCAATGT 58.820 45.455 15.94 0.00 0.00 2.71
339 340 2.214244 CGTCGATCGTACTTGCTCAATG 59.786 50.000 15.94 0.00 34.52 2.82
340 341 2.451132 CGTCGATCGTACTTGCTCAAT 58.549 47.619 15.94 0.00 34.52 2.57
341 342 1.891178 CGTCGATCGTACTTGCTCAA 58.109 50.000 15.94 0.00 34.52 3.02
342 343 0.522705 GCGTCGATCGTACTTGCTCA 60.523 55.000 15.94 0.00 42.13 4.26
343 344 1.201098 GGCGTCGATCGTACTTGCTC 61.201 60.000 15.94 4.34 42.13 4.26
344 345 1.226603 GGCGTCGATCGTACTTGCT 60.227 57.895 15.94 0.00 42.13 3.91
345 346 0.801067 AAGGCGTCGATCGTACTTGC 60.801 55.000 15.94 12.25 42.13 4.01
346 347 0.914551 CAAGGCGTCGATCGTACTTG 59.085 55.000 15.94 18.67 43.59 3.16
347 348 0.801067 GCAAGGCGTCGATCGTACTT 60.801 55.000 15.94 11.89 42.13 2.24
348 349 1.226603 GCAAGGCGTCGATCGTACT 60.227 57.895 15.94 6.41 42.13 2.73
349 350 0.028505 TAGCAAGGCGTCGATCGTAC 59.971 55.000 15.94 10.90 42.13 3.67
350 351 0.949397 ATAGCAAGGCGTCGATCGTA 59.051 50.000 15.94 0.00 42.13 3.43
351 352 0.102481 AATAGCAAGGCGTCGATCGT 59.898 50.000 15.94 0.00 42.13 3.73
352 353 2.046283 TAATAGCAAGGCGTCGATCG 57.954 50.000 9.36 9.36 43.12 3.69
353 354 2.731976 CCTTAATAGCAAGGCGTCGATC 59.268 50.000 0.00 0.00 38.80 3.69
354 355 2.755650 CCTTAATAGCAAGGCGTCGAT 58.244 47.619 0.00 0.00 38.80 3.59
355 356 2.218953 CCTTAATAGCAAGGCGTCGA 57.781 50.000 0.00 0.00 38.80 4.20
361 362 3.548818 GCGATTGTGCCTTAATAGCAAGG 60.549 47.826 2.15 0.00 46.74 3.61
362 363 3.621794 GCGATTGTGCCTTAATAGCAAG 58.378 45.455 2.15 0.00 43.02 4.01
363 364 3.691049 GCGATTGTGCCTTAATAGCAA 57.309 42.857 2.15 0.00 43.02 3.91
374 375 2.080700 GGCAAATTGGCGATTGTGC 58.919 52.632 18.47 18.47 34.17 4.57
382 383 1.202348 GTCCTACACTGGCAAATTGGC 59.798 52.381 12.92 12.92 44.03 4.52
383 384 1.818674 GGTCCTACACTGGCAAATTGG 59.181 52.381 0.00 0.00 0.00 3.16
384 385 1.468520 CGGTCCTACACTGGCAAATTG 59.531 52.381 0.00 0.00 0.00 2.32
385 386 1.073284 ACGGTCCTACACTGGCAAATT 59.927 47.619 0.00 0.00 35.37 1.82
386 387 0.690762 ACGGTCCTACACTGGCAAAT 59.309 50.000 0.00 0.00 35.37 2.32
387 388 0.250124 CACGGTCCTACACTGGCAAA 60.250 55.000 0.00 0.00 35.37 3.68
388 389 1.369692 CACGGTCCTACACTGGCAA 59.630 57.895 0.00 0.00 35.37 4.52
389 390 2.579657 CCACGGTCCTACACTGGCA 61.580 63.158 0.00 0.00 35.37 4.92
390 391 2.264794 CCACGGTCCTACACTGGC 59.735 66.667 0.00 0.00 35.37 4.85
391 392 1.477685 AACCCACGGTCCTACACTGG 61.478 60.000 0.00 0.00 33.12 4.00
392 393 1.259609 TAACCCACGGTCCTACACTG 58.740 55.000 0.00 0.00 33.12 3.66
393 394 2.014010 TTAACCCACGGTCCTACACT 57.986 50.000 0.00 0.00 33.12 3.55
394 395 2.613725 CCTTTAACCCACGGTCCTACAC 60.614 54.545 0.00 0.00 33.12 2.90
395 396 1.624813 CCTTTAACCCACGGTCCTACA 59.375 52.381 0.00 0.00 33.12 2.74
396 397 1.625315 ACCTTTAACCCACGGTCCTAC 59.375 52.381 0.00 0.00 33.12 3.18
397 398 1.624813 CACCTTTAACCCACGGTCCTA 59.375 52.381 0.00 0.00 33.12 2.94
398 399 0.399075 CACCTTTAACCCACGGTCCT 59.601 55.000 0.00 0.00 33.12 3.85
399 400 1.239296 GCACCTTTAACCCACGGTCC 61.239 60.000 0.00 0.00 33.12 4.46
400 401 0.535553 TGCACCTTTAACCCACGGTC 60.536 55.000 0.00 0.00 33.12 4.79
401 402 0.106619 TTGCACCTTTAACCCACGGT 60.107 50.000 0.00 0.00 37.65 4.83
402 403 1.067915 CATTGCACCTTTAACCCACGG 60.068 52.381 0.00 0.00 0.00 4.94
403 404 1.668628 GCATTGCACCTTTAACCCACG 60.669 52.381 3.15 0.00 0.00 4.94
404 405 1.618343 AGCATTGCACCTTTAACCCAC 59.382 47.619 11.91 0.00 0.00 4.61
405 406 1.617850 CAGCATTGCACCTTTAACCCA 59.382 47.619 11.91 0.00 0.00 4.51
406 407 1.892474 TCAGCATTGCACCTTTAACCC 59.108 47.619 11.91 0.00 0.00 4.11
407 408 2.558359 ACTCAGCATTGCACCTTTAACC 59.442 45.455 11.91 0.00 0.00 2.85
408 409 3.923017 ACTCAGCATTGCACCTTTAAC 57.077 42.857 11.91 0.00 0.00 2.01
423 424 1.337118 GAGGGATCCAGGCTACTCAG 58.663 60.000 15.23 0.00 0.00 3.35
424 425 0.105453 GGAGGGATCCAGGCTACTCA 60.105 60.000 15.23 0.00 0.00 3.41
425 426 1.182385 CGGAGGGATCCAGGCTACTC 61.182 65.000 15.23 9.39 0.00 2.59
426 427 1.152440 CGGAGGGATCCAGGCTACT 60.152 63.158 15.23 0.00 0.00 2.57
427 428 2.873525 GCGGAGGGATCCAGGCTAC 61.874 68.421 15.23 0.94 0.00 3.58
428 429 1.726192 TAGCGGAGGGATCCAGGCTA 61.726 60.000 15.23 16.08 30.65 3.93
429 430 3.088090 TAGCGGAGGGATCCAGGCT 62.088 63.158 15.23 17.06 32.26 4.58
430 431 2.524394 TAGCGGAGGGATCCAGGC 60.524 66.667 15.23 10.57 0.00 4.85
431 432 2.565645 CGTAGCGGAGGGATCCAGG 61.566 68.421 15.23 0.00 0.00 4.45
432 433 1.107538 TTCGTAGCGGAGGGATCCAG 61.108 60.000 15.23 2.68 0.00 3.86
433 434 0.685131 TTTCGTAGCGGAGGGATCCA 60.685 55.000 15.23 0.00 0.00 3.41
434 435 0.249363 GTTTCGTAGCGGAGGGATCC 60.249 60.000 1.92 1.92 0.00 3.36
435 436 0.594284 CGTTTCGTAGCGGAGGGATC 60.594 60.000 0.00 0.00 0.00 3.36
436 437 1.033746 TCGTTTCGTAGCGGAGGGAT 61.034 55.000 0.00 0.00 0.00 3.85
437 438 1.675310 TCGTTTCGTAGCGGAGGGA 60.675 57.895 0.00 0.00 0.00 4.20
438 439 1.515736 GTCGTTTCGTAGCGGAGGG 60.516 63.158 0.00 0.00 0.00 4.30
439 440 1.515736 GGTCGTTTCGTAGCGGAGG 60.516 63.158 0.00 0.00 0.00 4.30
440 441 1.515736 GGGTCGTTTCGTAGCGGAG 60.516 63.158 0.00 0.00 0.00 4.63
441 442 2.267351 TGGGTCGTTTCGTAGCGGA 61.267 57.895 0.00 0.00 0.00 5.54
442 443 2.090524 GTGGGTCGTTTCGTAGCGG 61.091 63.158 0.00 0.00 0.00 5.52
443 444 0.940519 TTGTGGGTCGTTTCGTAGCG 60.941 55.000 0.00 0.00 0.00 4.26
444 445 1.435577 ATTGTGGGTCGTTTCGTAGC 58.564 50.000 0.00 0.00 0.00 3.58
445 446 3.061697 GCTTATTGTGGGTCGTTTCGTAG 59.938 47.826 0.00 0.00 0.00 3.51
446 447 2.995258 GCTTATTGTGGGTCGTTTCGTA 59.005 45.455 0.00 0.00 0.00 3.43
447 448 1.802365 GCTTATTGTGGGTCGTTTCGT 59.198 47.619 0.00 0.00 0.00 3.85
448 449 2.073816 AGCTTATTGTGGGTCGTTTCG 58.926 47.619 0.00 0.00 0.00 3.46
449 450 2.414161 GCAGCTTATTGTGGGTCGTTTC 60.414 50.000 0.00 0.00 0.00 2.78
450 451 1.539827 GCAGCTTATTGTGGGTCGTTT 59.460 47.619 0.00 0.00 0.00 3.60
451 452 1.165270 GCAGCTTATTGTGGGTCGTT 58.835 50.000 0.00 0.00 0.00 3.85
452 453 1.019278 CGCAGCTTATTGTGGGTCGT 61.019 55.000 0.00 0.00 0.00 4.34
453 454 1.715585 CGCAGCTTATTGTGGGTCG 59.284 57.895 0.00 0.00 0.00 4.79
467 468 3.730761 GGGCTGTCAGTTGCGCAG 61.731 66.667 11.31 0.00 41.00 5.18
470 471 4.988598 ACGGGGCTGTCAGTTGCG 62.989 66.667 0.93 0.00 0.00 4.85
471 472 3.050275 GACGGGGCTGTCAGTTGC 61.050 66.667 0.93 0.00 38.75 4.17
472 473 1.374758 GAGACGGGGCTGTCAGTTG 60.375 63.158 11.82 0.00 41.41 3.16
473 474 1.837051 TGAGACGGGGCTGTCAGTT 60.837 57.895 11.82 0.00 41.41 3.16
474 475 2.203640 TGAGACGGGGCTGTCAGT 60.204 61.111 11.82 0.00 41.41 3.41
475 476 2.262915 GTGAGACGGGGCTGTCAG 59.737 66.667 11.82 0.00 41.41 3.51
476 477 3.311110 GGTGAGACGGGGCTGTCA 61.311 66.667 11.82 0.00 41.41 3.58
477 478 2.185310 ATTGGTGAGACGGGGCTGTC 62.185 60.000 2.79 2.79 39.21 3.51
478 479 2.224159 ATTGGTGAGACGGGGCTGT 61.224 57.895 0.00 0.00 0.00 4.40
479 480 1.746615 CATTGGTGAGACGGGGCTG 60.747 63.158 0.00 0.00 0.00 4.85
480 481 2.185310 GACATTGGTGAGACGGGGCT 62.185 60.000 0.00 0.00 0.00 5.19
481 482 1.745489 GACATTGGTGAGACGGGGC 60.745 63.158 0.00 0.00 0.00 5.80
482 483 1.447838 CGACATTGGTGAGACGGGG 60.448 63.158 0.00 0.00 0.00 5.73
483 484 0.736325 GACGACATTGGTGAGACGGG 60.736 60.000 0.00 0.00 0.00 5.28
484 485 1.071019 CGACGACATTGGTGAGACGG 61.071 60.000 0.00 0.00 0.00 4.79
485 486 1.674611 GCGACGACATTGGTGAGACG 61.675 60.000 0.00 0.00 0.00 4.18
486 487 1.674611 CGCGACGACATTGGTGAGAC 61.675 60.000 0.00 0.00 0.00 3.36
487 488 1.443702 CGCGACGACATTGGTGAGA 60.444 57.895 0.00 0.00 0.00 3.27
488 489 3.071459 GCGCGACGACATTGGTGAG 62.071 63.158 12.10 0.00 0.00 3.51
489 490 3.109547 GCGCGACGACATTGGTGA 61.110 61.111 12.10 0.00 0.00 4.02
490 491 2.239341 AATGCGCGACGACATTGGTG 62.239 55.000 12.10 0.00 34.44 4.17
491 492 2.032634 AATGCGCGACGACATTGGT 61.033 52.632 12.10 0.00 34.44 3.67
492 493 1.580893 CAATGCGCGACGACATTGG 60.581 57.895 24.86 13.38 42.00 3.16
493 494 2.210375 GCAATGCGCGACGACATTG 61.210 57.895 26.74 26.74 44.91 2.82
494 495 2.098298 GCAATGCGCGACGACATT 59.902 55.556 12.10 7.13 35.39 2.71
495 496 3.117812 TGCAATGCGCGACGACAT 61.118 55.556 12.10 0.00 46.97 3.06
496 497 4.070818 GTGCAATGCGCGACGACA 62.071 61.111 12.10 0.00 46.97 4.35
507 508 1.452651 CTGGCCCTGATCGTGCAAT 60.453 57.895 0.00 0.00 0.00 3.56
543 544 1.541588 GGGTTGCTCTTGTGCTTTAGG 59.458 52.381 0.00 0.00 0.00 2.69
550 551 2.620112 CCGCTGGGTTGCTCTTGTG 61.620 63.158 0.00 0.00 0.00 3.33
551 552 2.281761 CCGCTGGGTTGCTCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
576 577 3.181448 TGGGGTTCTTACCAGTGAAAGTC 60.181 47.826 0.00 0.00 46.96 3.01
577 578 2.781174 TGGGGTTCTTACCAGTGAAAGT 59.219 45.455 0.00 0.00 46.96 2.66
586 587 1.763968 GGCTGATTGGGGTTCTTACC 58.236 55.000 0.00 0.00 44.22 2.85
588 589 1.209504 CTCGGCTGATTGGGGTTCTTA 59.790 52.381 0.00 0.00 0.00 2.10
714 716 3.303135 AGACGAACGGCCAGCAGA 61.303 61.111 2.24 0.00 0.00 4.26
731 733 2.435938 GGCTTTGATCGGACGGCA 60.436 61.111 0.00 0.00 0.00 5.69
760 762 3.065462 GGGCAAAGGAAACCCATCA 57.935 52.632 0.00 0.00 43.64 3.07
765 767 0.107831 GGGTTTGGGCAAAGGAAACC 59.892 55.000 0.00 0.00 45.35 3.27
900 919 2.650116 CCTGGTGGAGTGGAGACGG 61.650 68.421 0.00 0.00 34.57 4.79
901 920 2.650116 CCCTGGTGGAGTGGAGACG 61.650 68.421 0.00 0.00 35.39 4.18
902 921 1.229209 TCCCTGGTGGAGTGGAGAC 60.229 63.158 0.00 0.00 38.61 3.36
912 931 2.239400 TGCTCGTATCTATCCCTGGTG 58.761 52.381 0.00 0.00 0.00 4.17
913 932 2.677542 TGCTCGTATCTATCCCTGGT 57.322 50.000 0.00 0.00 0.00 4.00
915 934 5.139435 TGATTTGCTCGTATCTATCCCTG 57.861 43.478 0.00 0.00 0.00 4.45
916 935 6.169094 CAATGATTTGCTCGTATCTATCCCT 58.831 40.000 0.00 0.00 0.00 4.20
917 936 5.934625 ACAATGATTTGCTCGTATCTATCCC 59.065 40.000 0.00 0.00 36.22 3.85
918 937 7.201478 GCTACAATGATTTGCTCGTATCTATCC 60.201 40.741 0.00 0.00 36.22 2.59
923 942 5.914085 AGCTACAATGATTTGCTCGTATC 57.086 39.130 0.00 0.00 36.22 2.24
927 946 3.062639 ACGAAGCTACAATGATTTGCTCG 59.937 43.478 0.00 0.00 36.22 5.03
973 992 2.159099 TCTTCCTCTGTCACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
974 993 2.101415 CTCTTCCTCTGTCACACACACA 59.899 50.000 0.00 0.00 0.00 3.72
990 1031 1.018148 TCGACGGCATCTCTCTCTTC 58.982 55.000 0.00 0.00 0.00 2.87
991 1032 0.736053 GTCGACGGCATCTCTCTCTT 59.264 55.000 0.00 0.00 0.00 2.85
992 1033 1.433053 CGTCGACGGCATCTCTCTCT 61.433 60.000 29.70 0.00 35.37 3.10
1527 1574 4.075682 ACAGACGAGACTGATGAAGAAGA 58.924 43.478 9.33 0.00 40.63 2.87
1539 1586 3.433615 CCAGGAAATTGAACAGACGAGAC 59.566 47.826 0.00 0.00 0.00 3.36
1546 1593 3.194116 CCATGGTCCAGGAAATTGAACAG 59.806 47.826 4.74 0.00 0.00 3.16
1547 1594 3.164268 CCATGGTCCAGGAAATTGAACA 58.836 45.455 4.74 0.00 0.00 3.18
1571 1621 5.109210 TCGATTCTGTGAATGACGCTAATT 58.891 37.500 0.00 0.00 0.00 1.40
1572 1622 4.682787 TCGATTCTGTGAATGACGCTAAT 58.317 39.130 0.00 0.00 0.00 1.73
1634 1686 2.415168 GCGTATGCTAGCAACTTGTTGA 59.585 45.455 23.54 0.00 38.39 3.18
1635 1687 2.159430 TGCGTATGCTAGCAACTTGTTG 59.841 45.455 23.54 8.62 43.34 3.33
1636 1688 2.422597 TGCGTATGCTAGCAACTTGTT 58.577 42.857 23.54 6.49 43.34 2.83
1637 1689 2.093306 TGCGTATGCTAGCAACTTGT 57.907 45.000 23.54 7.31 43.34 3.16
1647 1699 3.313526 GTCAATTCCTTGATGCGTATGCT 59.686 43.478 8.69 0.00 43.08 3.79
1875 1927 2.439507 TCTTAGGGCCATGGATTCTCAC 59.560 50.000 18.40 0.00 0.00 3.51
1894 1946 5.888161 AGAACAGAATTCCGCCAATTATTCT 59.112 36.000 0.65 0.00 37.72 2.40
1946 1998 4.389374 AGTTGACCACGATGAAATTCACT 58.611 39.130 0.00 0.00 0.00 3.41
1956 2012 5.299279 ACAGAATTTCAAAGTTGACCACGAT 59.701 36.000 0.00 0.00 36.83 3.73
2034 2093 7.173735 TGACAGTGCATCCATGATGTAATATTC 59.826 37.037 0.00 2.50 41.60 1.75
2039 2098 4.219264 TGACAGTGCATCCATGATGTAA 57.781 40.909 0.00 0.00 41.60 2.41
2095 2154 8.573035 TGAGTAAAAACACAGACACTTTTCTTT 58.427 29.630 0.00 0.00 0.00 2.52
2130 2201 8.306680 TCTAGTGTTTGCTTTTGTATGTACTC 57.693 34.615 0.00 0.00 0.00 2.59
2131 2202 8.148351 TCTCTAGTGTTTGCTTTTGTATGTACT 58.852 33.333 0.00 0.00 0.00 2.73
2132 2203 8.306680 TCTCTAGTGTTTGCTTTTGTATGTAC 57.693 34.615 0.00 0.00 0.00 2.90
2134 2205 7.801716 TTCTCTAGTGTTTGCTTTTGTATGT 57.198 32.000 0.00 0.00 0.00 2.29
2135 2206 8.345565 ACTTTCTCTAGTGTTTGCTTTTGTATG 58.654 33.333 0.00 0.00 0.00 2.39
2169 2250 8.044908 AGTACACTTTCTCCAGTTACTCAAAAA 58.955 33.333 0.00 0.00 0.00 1.94
2170 2251 7.494625 CAGTACACTTTCTCCAGTTACTCAAAA 59.505 37.037 0.00 0.00 0.00 2.44
2171 2252 6.984474 CAGTACACTTTCTCCAGTTACTCAAA 59.016 38.462 0.00 0.00 0.00 2.69
2172 2253 6.322969 TCAGTACACTTTCTCCAGTTACTCAA 59.677 38.462 0.00 0.00 0.00 3.02
2173 2254 5.831525 TCAGTACACTTTCTCCAGTTACTCA 59.168 40.000 0.00 0.00 0.00 3.41
2174 2255 6.016108 AGTCAGTACACTTTCTCCAGTTACTC 60.016 42.308 0.00 0.00 0.00 2.59
2175 2256 5.834204 AGTCAGTACACTTTCTCCAGTTACT 59.166 40.000 0.00 0.00 0.00 2.24
2176 2257 6.086785 AGTCAGTACACTTTCTCCAGTTAC 57.913 41.667 0.00 0.00 0.00 2.50
2177 2258 6.097839 ACAAGTCAGTACACTTTCTCCAGTTA 59.902 38.462 0.00 0.00 34.17 2.24
2178 2259 5.104900 ACAAGTCAGTACACTTTCTCCAGTT 60.105 40.000 0.00 0.00 34.17 3.16
2211 2292 2.488528 CCATAGCCCAGAATCTGCATGT 60.489 50.000 4.40 0.00 0.00 3.21
2290 2371 1.144936 GGAGACCTGGGCGAGATTG 59.855 63.158 0.00 0.00 0.00 2.67
2323 2404 2.627945 TCCTCGCGTTGCAAAGATTAT 58.372 42.857 16.93 0.00 0.00 1.28
2324 2405 2.087501 TCCTCGCGTTGCAAAGATTA 57.912 45.000 16.93 0.00 0.00 1.75
2372 2456 6.204882 AGCACCAACTAACAGTGTATTTTCTC 59.795 38.462 0.00 0.00 33.96 2.87
2379 2463 6.104146 TGATTAGCACCAACTAACAGTGTA 57.896 37.500 0.00 0.00 35.05 2.90
2395 2479 0.778815 CCGACGATCGCTTGATTAGC 59.221 55.000 16.60 0.00 46.83 3.09
2396 2480 2.401017 TCCGACGATCGCTTGATTAG 57.599 50.000 16.60 0.00 38.82 1.73
2398 2482 1.860950 CATTCCGACGATCGCTTGATT 59.139 47.619 16.60 2.71 38.82 2.57
2399 2483 1.491670 CATTCCGACGATCGCTTGAT 58.508 50.000 16.60 0.00 38.82 2.57
2400 2484 1.145759 GCATTCCGACGATCGCTTGA 61.146 55.000 16.60 5.97 38.82 3.02
2401 2485 1.273887 GCATTCCGACGATCGCTTG 59.726 57.895 16.60 4.86 38.82 4.01
2402 2486 1.148157 CTGCATTCCGACGATCGCTT 61.148 55.000 16.60 0.00 38.82 4.68
2404 2488 2.589492 CCTGCATTCCGACGATCGC 61.589 63.158 16.60 7.26 38.82 4.58
2405 2489 1.951130 CCCTGCATTCCGACGATCG 60.951 63.158 14.88 14.88 40.07 3.69
2406 2490 2.247437 GCCCTGCATTCCGACGATC 61.247 63.158 0.00 0.00 0.00 3.69
2471 2561 0.835941 ATGAGGAAGAAGCGCATCCT 59.164 50.000 19.71 19.71 46.14 3.24
3271 3361 4.586001 AGAACAAGAAGAACCATGCACATT 59.414 37.500 0.00 0.00 0.00 2.71
3274 3364 4.036734 TGAAGAACAAGAAGAACCATGCAC 59.963 41.667 0.00 0.00 0.00 4.57
3275 3365 4.206375 TGAAGAACAAGAAGAACCATGCA 58.794 39.130 0.00 0.00 0.00 3.96
3276 3366 4.276926 ACTGAAGAACAAGAAGAACCATGC 59.723 41.667 0.00 0.00 0.00 4.06
3280 3370 5.007136 CAGACACTGAAGAACAAGAAGAACC 59.993 44.000 0.00 0.00 32.44 3.62
3281 3371 5.503194 GCAGACACTGAAGAACAAGAAGAAC 60.503 44.000 2.81 0.00 32.44 3.01
3282 3372 4.572389 GCAGACACTGAAGAACAAGAAGAA 59.428 41.667 2.81 0.00 32.44 2.52
3283 3373 4.122776 GCAGACACTGAAGAACAAGAAGA 58.877 43.478 2.81 0.00 32.44 2.87
3284 3374 3.060003 CGCAGACACTGAAGAACAAGAAG 60.060 47.826 2.81 0.00 32.44 2.85
3286 3376 2.473816 CGCAGACACTGAAGAACAAGA 58.526 47.619 2.81 0.00 32.44 3.02
3287 3377 1.070309 GCGCAGACACTGAAGAACAAG 60.070 52.381 0.30 0.00 32.44 3.16
3289 3379 0.104855 AGCGCAGACACTGAAGAACA 59.895 50.000 11.47 0.00 32.44 3.18
3290 3380 0.510359 CAGCGCAGACACTGAAGAAC 59.490 55.000 11.47 0.00 35.90 3.01
3291 3381 1.224069 GCAGCGCAGACACTGAAGAA 61.224 55.000 11.47 0.00 35.90 2.52
3292 3382 1.665916 GCAGCGCAGACACTGAAGA 60.666 57.895 11.47 0.00 35.90 2.87
3294 3384 2.108771 TGCAGCGCAGACACTGAA 59.891 55.556 11.47 0.00 35.90 3.02
3295 3385 2.662857 GTGCAGCGCAGACACTGA 60.663 61.111 11.47 0.00 40.08 3.41
3296 3386 2.664185 AGTGCAGCGCAGACACTG 60.664 61.111 23.57 8.28 42.83 3.66
3297 3387 2.446142 ATCAGTGCAGCGCAGACACT 62.446 55.000 20.11 20.11 45.25 3.55
3298 3388 1.964290 GATCAGTGCAGCGCAGACAC 61.964 60.000 11.47 14.80 40.08 3.67
3299 3389 1.739196 GATCAGTGCAGCGCAGACA 60.739 57.895 11.47 0.49 40.08 3.41
3300 3390 1.088340 ATGATCAGTGCAGCGCAGAC 61.088 55.000 11.47 2.23 40.08 3.51
3301 3391 0.808847 GATGATCAGTGCAGCGCAGA 60.809 55.000 11.47 6.06 40.08 4.26
3302 3392 1.087771 TGATGATCAGTGCAGCGCAG 61.088 55.000 11.47 1.31 40.08 5.18
3304 3394 0.247974 GTTGATGATCAGTGCAGCGC 60.248 55.000 0.00 0.00 0.00 5.92
3554 3670 2.244486 TTGTGGAGGCTGAGAGATCT 57.756 50.000 0.00 0.00 0.00 2.75
3667 3790 3.640407 AGCATCCACCACGCCACT 61.640 61.111 0.00 0.00 0.00 4.00
3817 3940 2.918802 TTCCGGTACAGCCCGTGT 60.919 61.111 0.00 0.00 46.66 4.49
4248 4371 4.094684 CTCCGGCGAGCTTAGTTG 57.905 61.111 9.30 0.00 0.00 3.16
4309 4432 1.819288 TCCTCTGTCAATCCAGACGAC 59.181 52.381 0.00 0.00 41.41 4.34
4322 4445 3.726557 TGAATTCATGGCTTCCTCTGT 57.273 42.857 3.38 0.00 0.00 3.41
4378 4505 2.849942 TGTTCACAATGTGACTCAGGG 58.150 47.619 16.50 0.00 42.60 4.45
4471 4603 1.270550 GTGAAGGGTGTGATTTGCCTG 59.729 52.381 0.00 0.00 0.00 4.85
4578 4710 7.548780 GCTCTGTTCTTATCATTCTCTTCTGTT 59.451 37.037 0.00 0.00 0.00 3.16
4839 4992 3.333980 TCCTGAGAGGACAAGGAGTTCTA 59.666 47.826 0.00 0.00 40.06 2.10
4851 5004 2.103373 CTCGTGGATTTCCTGAGAGGA 58.897 52.381 11.66 0.00 44.10 3.71
4908 5061 4.722700 AGGAACAGCGGCGCCAAT 62.723 61.111 30.40 14.98 0.00 3.16
4986 5145 2.640302 GCACCTGCTCGACTCCTCA 61.640 63.158 0.00 0.00 38.21 3.86
5046 5205 1.296867 CGGCGCACATTTCATCGTC 60.297 57.895 10.83 0.00 0.00 4.20
5082 5241 4.080969 GAGCAAGTTCATGAAGCTCTTG 57.919 45.455 28.05 25.68 46.06 3.02
5157 5316 0.760567 TGGTGGAGGATCAGATCGGG 60.761 60.000 4.23 0.00 36.25 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.