Multiple sequence alignment - TraesCS5D01G398700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G398700 chr5D 100.000 3971 0 0 1 3971 464694390 464690420 0.000000e+00 7334.0
1 TraesCS5D01G398700 chr5A 94.915 3992 176 16 1 3971 585098849 585094864 0.000000e+00 6222.0
2 TraesCS5D01G398700 chr5B 96.033 3176 98 14 807 3971 571613878 571617036 0.000000e+00 5142.0
3 TraesCS5D01G398700 chr4D 80.139 287 51 6 237 520 15434717 15434434 4.020000e-50 209.0
4 TraesCS5D01G398700 chr4D 83.221 149 23 2 274 421 445505297 445505150 6.920000e-28 135.0
5 TraesCS5D01G398700 chr4A 75.758 429 78 19 95 514 449406372 449406783 4.050000e-45 193.0
6 TraesCS5D01G398700 chr4A 81.609 174 29 3 367 538 725484634 725484462 1.490000e-29 141.0
7 TraesCS5D01G398700 chr3A 80.247 243 38 10 207 444 713709292 713709529 1.470000e-39 174.0
8 TraesCS5D01G398700 chr3A 90.625 64 2 2 3668 3731 477794537 477794478 9.150000e-12 82.4
9 TraesCS5D01G398700 chr6B 76.696 339 62 13 64 398 705390744 705390419 5.280000e-39 172.0
10 TraesCS5D01G398700 chr6B 92.188 64 4 1 3668 3731 46425165 46425103 5.470000e-14 89.8
11 TraesCS5D01G398700 chr7D 75.728 309 61 10 101 404 576609795 576610094 4.140000e-30 143.0
12 TraesCS5D01G398700 chr7D 94.000 50 3 0 3666 3715 252548125 252548076 4.260000e-10 76.8
13 TraesCS5D01G398700 chr2B 77.823 248 40 10 95 339 233554784 233555019 5.350000e-29 139.0
14 TraesCS5D01G398700 chr2D 83.916 143 22 1 204 346 481454071 481453930 6.920000e-28 135.0
15 TraesCS5D01G398700 chr1A 95.833 48 2 0 3661 3708 129728206 129728253 1.180000e-10 78.7
16 TraesCS5D01G398700 chr1A 95.833 48 2 0 3668 3715 247339067 247339020 1.180000e-10 78.7
17 TraesCS5D01G398700 chr3B 90.323 62 1 1 3669 3730 508706820 508706876 4.260000e-10 76.8
18 TraesCS5D01G398700 chr1D 92.453 53 2 2 3656 3707 484026234 484026285 1.530000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G398700 chr5D 464690420 464694390 3970 True 7334 7334 100.000 1 3971 1 chr5D.!!$R1 3970
1 TraesCS5D01G398700 chr5A 585094864 585098849 3985 True 6222 6222 94.915 1 3971 1 chr5A.!!$R1 3970
2 TraesCS5D01G398700 chr5B 571613878 571617036 3158 False 5142 5142 96.033 807 3971 1 chr5B.!!$F1 3164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 465 0.104671 GGCAAGCTGGTTTTTGCTCA 59.895 50.0 5.83 0.0 46.69 4.26 F
979 995 0.533755 AGGCAGATACAGCGGATTGC 60.534 55.0 0.00 0.0 46.98 3.56 F
2121 2137 0.837691 ACATGCCTGAGAGGGACACA 60.838 55.0 0.00 0.0 39.03 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1543 0.187117 TGGCCACAATGAGAAACCCA 59.813 50.0 0.0 0.0 0.0 4.51 R
2259 2275 0.379669 GCTCCAATGTGCCAGAATCG 59.620 55.0 0.0 0.0 0.0 3.34 R
3847 3869 0.700564 AGCAGCCAATTCTTCCCTCA 59.299 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 2.932614 CTGGCTGAAGGTGAACTATTCG 59.067 50.000 0.00 0.00 0.00 3.34
98 99 2.565391 TGGCTGAAGGTGAACTATTCGA 59.435 45.455 0.00 0.00 0.00 3.71
109 110 2.402640 ACTATTCGACGATCTTCCGC 57.597 50.000 0.00 0.00 0.00 5.54
112 113 2.001361 ATTCGACGATCTTCCGCGGT 62.001 55.000 27.15 5.04 32.84 5.68
146 147 4.995487 CCTAGTTTTGTCCTTCGTAGCTTT 59.005 41.667 0.00 0.00 0.00 3.51
154 155 0.992802 CTTCGTAGCTTTGTCGGAGC 59.007 55.000 0.00 0.00 40.43 4.70
196 197 2.105466 GCTGGCTGAGCTGTAGCAC 61.105 63.158 18.29 10.12 45.21 4.40
220 221 1.134401 TCGGGATCTTCATGCAACTCC 60.134 52.381 0.00 0.00 0.00 3.85
236 237 4.019174 CAACTCCCTGATGCCTTTACAAT 58.981 43.478 0.00 0.00 0.00 2.71
248 249 3.057526 GCCTTTACAATGTGGGTTGAGTC 60.058 47.826 0.00 0.00 33.37 3.36
251 252 2.169832 ACAATGTGGGTTGAGTCGAG 57.830 50.000 0.00 0.00 33.37 4.04
301 302 1.808133 GCTCAGGGTTTAGAGATGGCG 60.808 57.143 0.00 0.00 33.74 5.69
305 306 2.103094 CAGGGTTTAGAGATGGCGATGA 59.897 50.000 0.00 0.00 0.00 2.92
307 308 2.158957 GGGTTTAGAGATGGCGATGACA 60.159 50.000 0.00 0.00 0.00 3.58
313 314 2.026822 AGAGATGGCGATGACACCTTTT 60.027 45.455 0.00 0.00 0.00 2.27
316 317 3.197766 AGATGGCGATGACACCTTTTAGA 59.802 43.478 0.00 0.00 0.00 2.10
332 333 2.350057 TAGAGGAGGAGTGATGACGG 57.650 55.000 0.00 0.00 0.00 4.79
354 355 4.357947 GCCCGTGTGCTGTCTCGA 62.358 66.667 0.00 0.00 0.00 4.04
355 356 2.573869 CCCGTGTGCTGTCTCGAT 59.426 61.111 0.00 0.00 0.00 3.59
358 359 1.550065 CCGTGTGCTGTCTCGATAAG 58.450 55.000 0.00 0.00 0.00 1.73
369 370 2.097036 TCTCGATAAGACCCGCTTTGA 58.903 47.619 0.00 0.00 38.05 2.69
381 382 1.727467 GCTTTGAAGTGGTGTGCGT 59.273 52.632 0.00 0.00 0.00 5.24
403 404 0.528684 GGTATCTGAGTGTGCCGCTC 60.529 60.000 8.34 8.34 40.91 5.03
433 434 2.281970 GGTTTCGCCCGGGTTTCT 60.282 61.111 24.63 0.00 0.00 2.52
436 437 1.456296 GTTTCGCCCGGGTTTCTATT 58.544 50.000 24.63 0.00 0.00 1.73
437 438 2.631267 GTTTCGCCCGGGTTTCTATTA 58.369 47.619 24.63 0.00 0.00 0.98
453 454 8.560374 GGTTTCTATTAATAACTAGGCAAGCTG 58.440 37.037 0.00 0.00 0.00 4.24
455 456 7.374975 TCTATTAATAACTAGGCAAGCTGGT 57.625 36.000 0.00 0.00 0.00 4.00
464 465 0.104671 GGCAAGCTGGTTTTTGCTCA 59.895 50.000 5.83 0.00 46.69 4.26
465 466 1.494824 GCAAGCTGGTTTTTGCTCAG 58.505 50.000 0.00 0.00 44.70 3.35
471 472 3.067320 AGCTGGTTTTTGCTCAGTTTCTC 59.933 43.478 0.00 0.00 33.90 2.87
472 473 3.621794 CTGGTTTTTGCTCAGTTTCTCG 58.378 45.455 0.00 0.00 0.00 4.04
482 483 6.569228 TGCTCAGTTTCTCGTAATTAATCG 57.431 37.500 0.00 0.00 0.00 3.34
489 490 6.183324 GTTTCTCGTAATTAATCGAGCAACC 58.817 40.000 20.95 10.51 46.12 3.77
493 494 7.459394 CTCGTAATTAATCGAGCAACCTTTA 57.541 36.000 12.08 0.00 44.82 1.85
505 506 8.506168 TCGAGCAACCTTTATCTTTTTGATAT 57.494 30.769 0.00 0.00 37.48 1.63
538 539 9.791820 AAATTCTGCCATTTTGAAAAGAAAAAG 57.208 25.926 0.00 0.00 30.52 2.27
539 540 8.735692 ATTCTGCCATTTTGAAAAGAAAAAGA 57.264 26.923 0.00 0.00 30.52 2.52
542 543 8.450180 TCTGCCATTTTGAAAAGAAAAAGAAAC 58.550 29.630 0.00 0.00 30.52 2.78
560 563 2.927856 TGACGGGCACAGGACCAT 60.928 61.111 0.00 0.00 45.55 3.55
562 565 4.722700 ACGGGCACAGGACCATGC 62.723 66.667 11.41 11.41 45.55 4.06
566 569 2.282391 GCACAGGACCATGCCACA 60.282 61.111 9.14 0.00 35.73 4.17
586 589 2.440796 ATCCATGCTGCAACCGGG 60.441 61.111 6.36 6.55 0.00 5.73
625 629 2.209273 GGCAAACCAAAAAGTTGCGAT 58.791 42.857 0.00 0.00 35.26 4.58
626 630 2.611751 GGCAAACCAAAAAGTTGCGATT 59.388 40.909 0.00 0.00 35.26 3.34
727 731 9.772973 TCTAGATGTACTTTAGCAAAACTGAAA 57.227 29.630 0.00 0.00 0.00 2.69
979 995 0.533755 AGGCAGATACAGCGGATTGC 60.534 55.000 0.00 0.00 46.98 3.56
990 1006 2.405191 GGATTGCCGCGAAGAAGC 59.595 61.111 8.23 1.50 0.00 3.86
1033 1049 2.756283 CCCCTCTCGCCGTCTTCT 60.756 66.667 0.00 0.00 0.00 2.85
1212 1228 1.871039 CACCACCTGTTCGACGAAATT 59.129 47.619 12.67 0.00 0.00 1.82
1345 1361 1.211190 GTCTCGTACACCACCGTCC 59.789 63.158 0.00 0.00 0.00 4.79
1447 1463 3.825160 GAGGTGACACTTGCGGGCA 62.825 63.158 5.39 0.00 0.00 5.36
1733 1749 1.153349 GGGATGCGGTCTCTTGGTC 60.153 63.158 0.00 0.00 0.00 4.02
1830 1846 2.359850 GACACGAGGGGCAATGCA 60.360 61.111 7.79 0.00 0.00 3.96
1904 1920 1.576421 GGCAGCAACTACACACAGC 59.424 57.895 0.00 0.00 0.00 4.40
2019 2035 7.488792 CGGATGCAATTCAAATTATCAGACAAA 59.511 33.333 0.00 0.00 0.00 2.83
2064 2080 4.036262 GCTCTCATGTCTGGTCTACTACAG 59.964 50.000 0.00 0.00 36.07 2.74
2070 2086 5.194473 TGTCTGGTCTACTACAGAGGAAT 57.806 43.478 0.00 0.00 43.75 3.01
2078 2094 6.265649 GGTCTACTACAGAGGAATCTAATGCA 59.734 42.308 0.00 0.00 32.51 3.96
2121 2137 0.837691 ACATGCCTGAGAGGGACACA 60.838 55.000 0.00 0.00 39.03 3.72
2200 2216 5.295292 GCTTTGCAGCTATTCTACTTGATGA 59.705 40.000 0.00 0.00 43.51 2.92
2204 2220 5.070847 TGCAGCTATTCTACTTGATGATGGA 59.929 40.000 0.00 0.00 0.00 3.41
2232 2248 2.428890 TGTTGAACCAAACCATGTCACC 59.571 45.455 0.00 0.00 0.00 4.02
2259 2275 1.409427 AGTACTCTATCCGCAGTTGCC 59.591 52.381 0.00 0.00 37.91 4.52
2469 2485 3.117776 TCATCTGCAGTTTAGCCATCCAT 60.118 43.478 14.67 0.00 0.00 3.41
2535 2551 3.954258 GCACCAATATTAAGCCCAACTCT 59.046 43.478 0.00 0.00 0.00 3.24
2692 2708 1.112916 TGGTCGAGCTGGACACTTGA 61.113 55.000 27.22 5.62 38.70 3.02
2996 3012 5.888161 AGGTCATTACATTTCCTGATTGGAC 59.112 40.000 0.00 0.00 46.14 4.02
3064 3080 6.978080 GTGATTATTCATTTGGTTTGCCGTAT 59.022 34.615 0.00 0.00 33.80 3.06
3419 3437 8.698854 GCTATGAGAAATATCAGTCTTTCTTCG 58.301 37.037 0.00 0.00 40.77 3.79
3572 3591 5.724328 TCTGTAGAGATTTTTCATGCTCGT 58.276 37.500 0.00 0.00 32.80 4.18
3575 3594 7.173218 TCTGTAGAGATTTTTCATGCTCGTTTT 59.827 33.333 0.00 0.00 32.80 2.43
3745 3764 5.012871 AGGGAGTACTGATCATGATTCATGG 59.987 44.000 23.07 11.67 41.66 3.66
3830 3849 4.647853 ACATTGTGGCAATCTAGCATTCAT 59.352 37.500 0.00 0.00 35.83 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 3.255379 GCACCGCGGAAGATCGTC 61.255 66.667 35.90 6.66 0.00 4.20
98 99 4.814294 GGCACCGCGGAAGATCGT 62.814 66.667 35.90 3.57 0.00 3.73
109 110 3.989698 CTAGGCACGTCTGGCACCG 62.990 68.421 2.43 0.65 45.63 4.94
112 113 0.107831 AAAACTAGGCACGTCTGGCA 59.892 50.000 2.43 0.00 45.63 4.92
146 147 2.343758 GCAACTCTGGCTCCGACA 59.656 61.111 0.00 0.00 0.00 4.35
154 155 0.738389 ACCAAACAACGCAACTCTGG 59.262 50.000 0.00 0.00 0.00 3.86
196 197 0.033920 TGCATGAAGATCCCGATCCG 59.966 55.000 0.00 0.00 38.58 4.18
220 221 2.428171 CCCACATTGTAAAGGCATCAGG 59.572 50.000 0.00 0.00 0.00 3.86
236 237 0.895530 GATCCTCGACTCAACCCACA 59.104 55.000 0.00 0.00 0.00 4.17
256 257 3.140225 CTCCGACTTCGCCCTAGGC 62.140 68.421 2.05 0.00 46.75 3.93
261 262 2.760387 AAACGACTCCGACTTCGCCC 62.760 60.000 0.00 0.00 38.88 6.13
265 266 1.061485 GAGCAAACGACTCCGACTTC 58.939 55.000 0.00 0.00 39.50 3.01
301 302 4.468153 ACTCCTCCTCTAAAAGGTGTCATC 59.532 45.833 0.00 0.00 46.32 2.92
305 306 3.858135 TCACTCCTCCTCTAAAAGGTGT 58.142 45.455 0.00 0.00 46.32 4.16
307 308 4.468153 GTCATCACTCCTCCTCTAAAAGGT 59.532 45.833 0.00 0.00 46.32 3.50
313 314 1.564818 ACCGTCATCACTCCTCCTCTA 59.435 52.381 0.00 0.00 0.00 2.43
316 317 0.039764 TCACCGTCATCACTCCTCCT 59.960 55.000 0.00 0.00 0.00 3.69
354 355 2.039879 ACCACTTCAAAGCGGGTCTTAT 59.960 45.455 2.14 0.00 33.29 1.73
355 356 1.418637 ACCACTTCAAAGCGGGTCTTA 59.581 47.619 2.14 0.00 33.29 2.10
358 359 0.818040 ACACCACTTCAAAGCGGGTC 60.818 55.000 2.14 0.00 35.55 4.46
363 364 0.592247 CACGCACACCACTTCAAAGC 60.592 55.000 0.00 0.00 0.00 3.51
367 368 1.817520 CCACACGCACACCACTTCA 60.818 57.895 0.00 0.00 0.00 3.02
369 370 0.107831 ATACCACACGCACACCACTT 59.892 50.000 0.00 0.00 0.00 3.16
374 375 1.336887 ACTCAGATACCACACGCACAC 60.337 52.381 0.00 0.00 0.00 3.82
381 382 0.246360 CGGCACACTCAGATACCACA 59.754 55.000 0.00 0.00 0.00 4.17
403 404 2.163826 CGAAACCATCACAATCGCTG 57.836 50.000 0.00 0.00 0.00 5.18
433 434 8.817092 AAAACCAGCTTGCCTAGTTATTAATA 57.183 30.769 0.00 0.00 0.00 0.98
436 437 6.571537 GCAAAAACCAGCTTGCCTAGTTATTA 60.572 38.462 0.00 0.00 41.69 0.98
437 438 5.783111 CAAAAACCAGCTTGCCTAGTTATT 58.217 37.500 0.00 0.00 0.00 1.40
453 454 3.692791 ACGAGAAACTGAGCAAAAACC 57.307 42.857 0.00 0.00 0.00 3.27
455 456 9.607285 GATTAATTACGAGAAACTGAGCAAAAA 57.393 29.630 0.00 0.00 0.00 1.94
471 472 8.073355 AGATAAAGGTTGCTCGATTAATTACG 57.927 34.615 0.00 0.00 0.00 3.18
538 539 1.070786 TCCTGTGCCCGTCAGTTTC 59.929 57.895 0.00 0.00 0.00 2.78
539 540 1.227853 GTCCTGTGCCCGTCAGTTT 60.228 57.895 0.00 0.00 0.00 2.66
542 543 2.959484 ATGGTCCTGTGCCCGTCAG 61.959 63.158 0.00 0.00 0.00 3.51
560 563 2.765279 AGCATGGATGGTGTGGCA 59.235 55.556 0.00 0.00 37.10 4.92
566 569 2.048023 CGGTTGCAGCATGGATGGT 61.048 57.895 2.05 0.00 35.22 3.55
586 589 1.826709 GTAGAGGCTTCCTGCTCCC 59.173 63.158 0.00 0.00 42.39 4.30
625 629 6.146510 GCTGATTGCATCTTTTGATTTGTCAA 59.853 34.615 0.00 0.00 42.31 3.18
626 630 5.636121 GCTGATTGCATCTTTTGATTTGTCA 59.364 36.000 0.00 0.00 42.31 3.58
660 664 4.240096 GCACATCTAAATAATGGCATGGC 58.760 43.478 13.29 13.29 0.00 4.40
700 704 9.944376 TTCAGTTTTGCTAAAGTACATCTAGAT 57.056 29.630 0.00 0.00 0.00 1.98
701 705 9.772973 TTTCAGTTTTGCTAAAGTACATCTAGA 57.227 29.630 0.00 0.00 0.00 2.43
741 745 8.047413 ACCCAAAAATAATACTTACTCCAACG 57.953 34.615 0.00 0.00 0.00 4.10
743 747 9.165035 CGTACCCAAAAATAATACTTACTCCAA 57.835 33.333 0.00 0.00 0.00 3.53
744 748 8.320617 ACGTACCCAAAAATAATACTTACTCCA 58.679 33.333 0.00 0.00 0.00 3.86
981 997 1.154395 GTGCTTTCCGCTTCTTCGC 60.154 57.895 0.00 0.00 40.11 4.70
990 1006 2.879907 CTGGGCATGTGCTTTCCG 59.120 61.111 4.84 0.00 41.70 4.30
1033 1049 0.879765 GACTTGAGGGACGAGACGAA 59.120 55.000 0.00 0.00 34.31 3.85
1437 1453 3.058160 GTGAGCATGCCCGCAAGT 61.058 61.111 15.66 0.00 0.00 3.16
1497 1513 2.048222 CGCACGGTGACTCCATGT 60.048 61.111 13.29 0.00 31.28 3.21
1518 1534 0.322456 TGAGAAACCCATCAAGCCCG 60.322 55.000 0.00 0.00 0.00 6.13
1524 1540 2.170166 GCCACAATGAGAAACCCATCA 58.830 47.619 0.00 0.00 0.00 3.07
1527 1543 0.187117 TGGCCACAATGAGAAACCCA 59.813 50.000 0.00 0.00 0.00 4.51
1733 1749 5.334182 CGGATATACCCATCTATCATCGTCG 60.334 48.000 0.00 0.00 34.64 5.12
1830 1846 0.953727 TCAAATCAACAAGCAGCGCT 59.046 45.000 2.64 2.64 42.56 5.92
1904 1920 5.657474 CATCAAAACCATCCTTCAGAATGG 58.343 41.667 0.32 0.32 39.93 3.16
1976 1992 2.027625 CGGGCAAGGTCAAGACGAC 61.028 63.158 0.00 0.00 44.57 4.34
2019 2035 5.006153 CATTCCAAGATGCAATGTGTGAT 57.994 39.130 0.00 0.00 0.00 3.06
2078 2094 2.694628 TCAAACAGTTGCCTTGCTTCAT 59.305 40.909 0.00 0.00 34.50 2.57
2121 2137 8.960591 CCAGATAACAAAGTACTCCATGAAATT 58.039 33.333 0.00 0.00 0.00 1.82
2200 2216 1.549203 GGTTCAACACCAGCATCCAT 58.451 50.000 0.00 0.00 46.42 3.41
2224 2240 2.744202 GAGTACTTGCCAAGGTGACATG 59.256 50.000 9.64 0.00 0.00 3.21
2226 2242 2.047061 AGAGTACTTGCCAAGGTGACA 58.953 47.619 9.64 0.00 0.00 3.58
2232 2248 2.159099 TGCGGATAGAGTACTTGCCAAG 60.159 50.000 2.11 2.11 0.00 3.61
2259 2275 0.379669 GCTCCAATGTGCCAGAATCG 59.620 55.000 0.00 0.00 0.00 3.34
2469 2485 2.977456 GACGTGTGTGCATGGCCA 60.977 61.111 8.56 8.56 33.54 5.36
2535 2551 7.574779 GCATTTAAGACACCAATGTATGTGACA 60.575 37.037 0.00 0.00 39.95 3.58
2692 2708 6.725364 TCTGGATAAGATTTTCTGCCTCTTT 58.275 36.000 0.00 0.00 31.89 2.52
2996 3012 7.642978 GCTATCATAATTGTTGCACAAGAAGAG 59.357 37.037 7.58 3.98 41.94 2.85
3064 3080 9.701098 AGTTCTTTAACGAATCATAACTGTACA 57.299 29.630 0.00 0.00 40.73 2.90
3248 3266 7.555914 TGCACATGTGACATAATGGTAAGTAAT 59.444 33.333 29.80 0.00 0.00 1.89
3443 3461 7.108847 CCATTTAGAAGGCCTATATCTGAAGG 58.891 42.308 14.63 13.56 35.86 3.46
3575 3594 5.283876 AGATTGGTAAATGGGAGGGAAAA 57.716 39.130 0.00 0.00 0.00 2.29
3579 3598 5.646692 TTCTAGATTGGTAAATGGGAGGG 57.353 43.478 0.00 0.00 0.00 4.30
3580 3599 7.290061 TGAATTCTAGATTGGTAAATGGGAGG 58.710 38.462 7.05 0.00 0.00 4.30
3581 3600 8.930846 ATGAATTCTAGATTGGTAAATGGGAG 57.069 34.615 7.05 0.00 0.00 4.30
3583 3602 9.754382 CAAATGAATTCTAGATTGGTAAATGGG 57.246 33.333 7.05 0.00 0.00 4.00
3840 3862 3.885901 GCCAATTCTTCCCTCATAAGGAC 59.114 47.826 0.00 0.00 46.67 3.85
3847 3869 0.700564 AGCAGCCAATTCTTCCCTCA 59.299 50.000 0.00 0.00 0.00 3.86
3900 3922 2.158726 ACTTAGGTGCCCGTTTGAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
3922 3944 4.142337 TGGCGTTCTAATACAATGACGAGA 60.142 41.667 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.