Multiple sequence alignment - TraesCS5D01G398600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G398600 chr5D 100.000 3558 0 0 1 3558 464664874 464661317 0.000000e+00 6571.0
1 TraesCS5D01G398600 chr5D 75.600 250 44 16 38 276 490610671 490610914 1.350000e-19 108.0
2 TraesCS5D01G398600 chr5B 93.788 2769 123 20 822 3558 571634585 571637336 0.000000e+00 4115.0
3 TraesCS5D01G398600 chr5B 86.232 276 22 7 380 644 571632555 571632825 5.810000e-73 285.0
4 TraesCS5D01G398600 chr5B 87.045 247 20 5 826 1067 571627268 571627507 5.850000e-68 268.0
5 TraesCS5D01G398600 chr5B 94.872 39 1 1 171 208 655609654 655609616 3.840000e-05 60.2
6 TraesCS5D01G398600 chr5A 95.178 788 34 3 966 1752 585086700 585085916 0.000000e+00 1242.0
7 TraesCS5D01G398600 chr5A 90.985 721 30 18 1747 2433 585080841 585080122 0.000000e+00 939.0
8 TraesCS5D01G398600 chr5A 95.686 510 22 0 3049 3558 585080121 585079612 0.000000e+00 821.0
9 TraesCS5D01G398600 chr5A 85.375 253 19 9 699 941 585088159 585087915 2.740000e-61 246.0
10 TraesCS5D01G398600 chrUn 74.373 558 122 18 1969 2516 91331193 91331739 5.980000e-53 219.0
11 TraesCS5D01G398600 chr7A 74.000 550 119 18 1969 2507 91300419 91299883 6.020000e-48 202.0
12 TraesCS5D01G398600 chr1D 75.600 250 41 19 39 276 346652585 346652826 4.860000e-19 106.0
13 TraesCS5D01G398600 chr1D 84.884 86 5 4 657 739 441750427 441750347 2.940000e-11 80.5
14 TraesCS5D01G398600 chr1D 78.030 132 23 6 38 165 106830651 106830522 1.060000e-10 78.7
15 TraesCS5D01G398600 chr6D 75.099 253 45 18 38 278 241500408 241500162 6.280000e-18 102.0
16 TraesCS5D01G398600 chr2B 75.000 252 44 17 38 276 407902897 407902652 8.130000e-17 99.0
17 TraesCS5D01G398600 chr1B 84.615 91 13 1 40 129 401000987 401001077 4.890000e-14 89.8
18 TraesCS5D01G398600 chr1B 86.585 82 3 4 657 735 600022995 600022919 2.280000e-12 84.2
19 TraesCS5D01G398600 chr1A 85.393 89 5 4 654 739 536614899 536614982 6.330000e-13 86.1
20 TraesCS5D01G398600 chr2D 81.308 107 17 2 38 141 230906079 230905973 2.280000e-12 84.2
21 TraesCS5D01G398600 chr2D 84.706 85 5 6 658 739 16557994 16558073 1.060000e-10 78.7
22 TraesCS5D01G398600 chr7D 84.706 85 5 4 658 739 23480666 23480587 1.060000e-10 78.7
23 TraesCS5D01G398600 chr3A 73.016 252 47 19 38 276 97890955 97891198 6.370000e-08 69.4
24 TraesCS5D01G398600 chr3D 73.543 223 40 15 38 249 482873382 482873168 2.290000e-07 67.6
25 TraesCS5D01G398600 chr3B 90.385 52 3 2 1467 1517 771623320 771623270 2.290000e-07 67.6
26 TraesCS5D01G398600 chr3B 87.500 56 5 2 1463 1517 771634001 771633947 2.970000e-06 63.9
27 TraesCS5D01G398600 chr6B 97.143 35 1 0 2327 2361 80839819 80839785 3.840000e-05 60.2
28 TraesCS5D01G398600 chr4A 97.143 35 1 0 2327 2361 647321264 647321298 3.840000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G398600 chr5D 464661317 464664874 3557 True 6571 6571 100.0000 1 3558 1 chr5D.!!$R1 3557
1 TraesCS5D01G398600 chr5B 571632555 571637336 4781 False 2200 4115 90.0100 380 3558 2 chr5B.!!$F2 3178
2 TraesCS5D01G398600 chr5A 585079612 585080841 1229 True 880 939 93.3355 1747 3558 2 chr5A.!!$R1 1811
3 TraesCS5D01G398600 chr5A 585085916 585088159 2243 True 744 1242 90.2765 699 1752 2 chr5A.!!$R2 1053
4 TraesCS5D01G398600 chrUn 91331193 91331739 546 False 219 219 74.3730 1969 2516 1 chrUn.!!$F1 547
5 TraesCS5D01G398600 chr7A 91299883 91300419 536 True 202 202 74.0000 1969 2507 1 chr7A.!!$R1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 553 0.031716 CCTCCTCCTGAGATGGACCA 60.032 60.0 0.00 0.0 44.42 4.02 F
786 1365 0.032678 CTAGCTCGGAATGGATGCGT 59.967 55.0 0.00 0.0 44.13 5.24 F
919 2538 0.820891 CGGCCATCCAATCTTCCAGG 60.821 60.0 2.24 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 5051 0.171903 GTCATTGTCATGTGCAGGCC 59.828 55.000 0.0 0.0 0.00 5.19 R
2539 5389 2.795329 CTGGAACTACAGGGCATTTGT 58.205 47.619 0.0 0.0 34.84 2.83 R
2761 5611 3.695060 ACGTGTGGTAACCAAACAATGAA 59.305 39.130 0.0 0.0 41.61 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.508461 CTCTCTCAGGATGCTATGTCAG 57.492 50.000 0.00 0.00 34.76 3.51
40 41 4.978083 CTATGTCAGCAAATCCAAGCTT 57.022 40.909 0.00 0.00 39.50 3.74
41 42 3.863142 ATGTCAGCAAATCCAAGCTTC 57.137 42.857 0.00 0.00 39.50 3.86
42 43 2.867624 TGTCAGCAAATCCAAGCTTCT 58.132 42.857 0.00 0.00 39.50 2.85
43 44 2.555325 TGTCAGCAAATCCAAGCTTCTG 59.445 45.455 0.00 0.00 39.50 3.02
44 45 1.542915 TCAGCAAATCCAAGCTTCTGC 59.457 47.619 0.00 0.86 39.50 4.26
45 46 0.893447 AGCAAATCCAAGCTTCTGCC 59.107 50.000 0.00 0.00 38.01 4.85
46 47 0.108472 GCAAATCCAAGCTTCTGCCC 60.108 55.000 0.00 0.00 40.80 5.36
47 48 1.259609 CAAATCCAAGCTTCTGCCCA 58.740 50.000 0.00 0.00 40.80 5.36
48 49 1.203994 CAAATCCAAGCTTCTGCCCAG 59.796 52.381 0.00 0.00 40.80 4.45
49 50 0.324091 AATCCAAGCTTCTGCCCAGG 60.324 55.000 0.00 0.00 40.80 4.45
50 51 1.504275 ATCCAAGCTTCTGCCCAGGT 61.504 55.000 0.00 0.00 40.80 4.00
51 52 1.228675 CCAAGCTTCTGCCCAGGTT 60.229 57.895 0.00 0.00 40.80 3.50
52 53 1.246737 CCAAGCTTCTGCCCAGGTTC 61.247 60.000 0.00 0.00 40.80 3.62
53 54 1.075659 AAGCTTCTGCCCAGGTTCC 59.924 57.895 0.00 0.00 40.80 3.62
54 55 2.747855 GCTTCTGCCCAGGTTCCG 60.748 66.667 0.00 0.00 0.00 4.30
55 56 2.747855 CTTCTGCCCAGGTTCCGC 60.748 66.667 0.00 0.00 0.00 5.54
56 57 4.344865 TTCTGCCCAGGTTCCGCC 62.345 66.667 0.00 0.00 37.58 6.13
58 59 4.785453 CTGCCCAGGTTCCGCCTC 62.785 72.222 0.00 0.00 46.96 4.70
61 62 4.148825 CCCAGGTTCCGCCTCGAG 62.149 72.222 5.13 5.13 46.96 4.04
62 63 3.068691 CCAGGTTCCGCCTCGAGA 61.069 66.667 15.71 0.00 46.96 4.04
63 64 2.182030 CAGGTTCCGCCTCGAGAC 59.818 66.667 15.71 0.00 46.96 3.36
64 65 3.441290 AGGTTCCGCCTCGAGACG 61.441 66.667 15.71 15.17 46.96 4.18
69 70 4.477975 CCGCCTCGAGACGGTGAC 62.478 72.222 29.46 2.36 44.46 3.67
117 118 4.335400 TTTTTCCTGGGCAAATGACTTC 57.665 40.909 0.00 0.00 0.00 3.01
118 119 2.673775 TTCCTGGGCAAATGACTTCA 57.326 45.000 0.00 0.00 0.00 3.02
119 120 2.905415 TCCTGGGCAAATGACTTCAT 57.095 45.000 0.00 0.00 38.41 2.57
120 121 4.314522 TTCCTGGGCAAATGACTTCATA 57.685 40.909 0.00 0.00 35.10 2.15
121 122 4.524802 TCCTGGGCAAATGACTTCATAT 57.475 40.909 0.00 0.00 35.10 1.78
122 123 5.645056 TCCTGGGCAAATGACTTCATATA 57.355 39.130 0.00 0.00 35.10 0.86
123 124 5.624159 TCCTGGGCAAATGACTTCATATAG 58.376 41.667 0.00 0.00 35.10 1.31
124 125 4.217118 CCTGGGCAAATGACTTCATATAGC 59.783 45.833 0.00 0.00 35.10 2.97
125 126 4.790937 TGGGCAAATGACTTCATATAGCA 58.209 39.130 10.66 0.00 35.10 3.49
126 127 4.823442 TGGGCAAATGACTTCATATAGCAG 59.177 41.667 10.66 0.00 35.10 4.24
127 128 5.065914 GGGCAAATGACTTCATATAGCAGA 58.934 41.667 10.66 0.00 35.10 4.26
128 129 5.532406 GGGCAAATGACTTCATATAGCAGAA 59.468 40.000 10.66 0.00 35.10 3.02
129 130 6.433766 GGCAAATGACTTCATATAGCAGAAC 58.566 40.000 10.66 0.00 35.10 3.01
130 131 6.038603 GGCAAATGACTTCATATAGCAGAACA 59.961 38.462 10.66 0.00 35.10 3.18
131 132 7.255381 GGCAAATGACTTCATATAGCAGAACAT 60.255 37.037 10.66 0.00 35.10 2.71
132 133 7.802251 GCAAATGACTTCATATAGCAGAACATC 59.198 37.037 0.00 0.00 35.10 3.06
133 134 8.833493 CAAATGACTTCATATAGCAGAACATCA 58.167 33.333 0.00 0.00 35.10 3.07
134 135 8.604640 AATGACTTCATATAGCAGAACATCAG 57.395 34.615 0.00 0.00 35.10 2.90
135 136 5.987953 TGACTTCATATAGCAGAACATCAGC 59.012 40.000 0.00 0.00 0.00 4.26
136 137 5.922053 ACTTCATATAGCAGAACATCAGCA 58.078 37.500 0.00 0.00 30.69 4.41
137 138 6.531923 ACTTCATATAGCAGAACATCAGCAT 58.468 36.000 0.00 0.00 30.69 3.79
138 139 6.649973 ACTTCATATAGCAGAACATCAGCATC 59.350 38.462 0.00 0.00 30.69 3.91
139 140 6.105397 TCATATAGCAGAACATCAGCATCA 57.895 37.500 0.00 0.00 30.69 3.07
140 141 6.164176 TCATATAGCAGAACATCAGCATCAG 58.836 40.000 0.00 0.00 30.69 2.90
141 142 2.783609 AGCAGAACATCAGCATCAGT 57.216 45.000 0.00 0.00 30.69 3.41
142 143 2.357075 AGCAGAACATCAGCATCAGTG 58.643 47.619 0.00 0.00 30.69 3.66
153 154 2.850439 CATCAGTGCACCTCTGTGG 58.150 57.895 14.63 0.00 42.99 4.17
154 155 1.002868 ATCAGTGCACCTCTGTGGC 60.003 57.895 14.63 0.00 42.99 5.01
155 156 2.475371 ATCAGTGCACCTCTGTGGCC 62.475 60.000 14.63 0.00 42.99 5.36
156 157 3.958860 AGTGCACCTCTGTGGCCC 61.959 66.667 14.63 0.00 42.99 5.80
157 158 3.958860 GTGCACCTCTGTGGCCCT 61.959 66.667 5.22 0.00 42.99 5.19
158 159 2.203922 TGCACCTCTGTGGCCCTA 60.204 61.111 0.00 0.00 42.99 3.53
159 160 2.269241 GCACCTCTGTGGCCCTAC 59.731 66.667 0.00 0.00 42.99 3.18
160 161 2.592993 GCACCTCTGTGGCCCTACA 61.593 63.158 0.00 0.00 42.99 2.74
161 162 2.066340 CACCTCTGTGGCCCTACAA 58.934 57.895 0.00 0.00 38.90 2.41
162 163 0.036010 CACCTCTGTGGCCCTACAAG 60.036 60.000 0.00 0.00 38.90 3.16
163 164 1.078143 CCTCTGTGGCCCTACAAGC 60.078 63.158 0.00 0.00 0.00 4.01
170 171 2.439156 GCCCTACAAGCCTGCCTG 60.439 66.667 0.00 0.00 0.00 4.85
171 172 2.273449 CCCTACAAGCCTGCCTGG 59.727 66.667 0.00 0.00 39.35 4.45
172 173 2.273449 CCTACAAGCCTGCCTGGG 59.727 66.667 0.00 0.00 36.00 4.45
197 198 3.339093 GGCTTGTGGGCCCTAGGT 61.339 66.667 25.70 0.00 45.92 3.08
198 199 2.044946 GCTTGTGGGCCCTAGGTG 60.045 66.667 25.70 10.55 0.00 4.00
199 200 2.677228 CTTGTGGGCCCTAGGTGG 59.323 66.667 25.70 4.46 0.00 4.61
207 208 2.446802 CCCTAGGTGGCTCCCCTC 60.447 72.222 8.29 0.00 36.75 4.30
208 209 2.840102 CCTAGGTGGCTCCCCTCG 60.840 72.222 0.00 0.00 36.75 4.63
209 210 2.840102 CTAGGTGGCTCCCCTCGG 60.840 72.222 1.14 0.00 36.75 4.63
210 211 4.475444 TAGGTGGCTCCCCTCGGG 62.475 72.222 1.14 0.00 46.11 5.14
212 213 4.791069 GGTGGCTCCCCTCGGGTA 62.791 72.222 0.55 0.00 44.74 3.69
213 214 2.446036 GTGGCTCCCCTCGGGTAT 60.446 66.667 0.55 0.00 44.74 2.73
214 215 2.070650 GTGGCTCCCCTCGGGTATT 61.071 63.158 0.55 0.00 44.74 1.89
215 216 1.307517 TGGCTCCCCTCGGGTATTT 60.308 57.895 0.55 0.00 44.74 1.40
216 217 0.917333 TGGCTCCCCTCGGGTATTTT 60.917 55.000 0.55 0.00 44.74 1.82
217 218 0.257905 GGCTCCCCTCGGGTATTTTT 59.742 55.000 0.55 0.00 44.74 1.94
218 219 1.676746 GCTCCCCTCGGGTATTTTTC 58.323 55.000 0.55 0.00 44.74 2.29
219 220 1.749635 GCTCCCCTCGGGTATTTTTCC 60.750 57.143 0.55 0.00 44.74 3.13
220 221 1.844497 CTCCCCTCGGGTATTTTTCCT 59.156 52.381 0.55 0.00 44.74 3.36
221 222 2.241430 CTCCCCTCGGGTATTTTTCCTT 59.759 50.000 0.55 0.00 44.74 3.36
222 223 2.240414 TCCCCTCGGGTATTTTTCCTTC 59.760 50.000 0.55 0.00 44.74 3.46
223 224 2.651455 CCCTCGGGTATTTTTCCTTCC 58.349 52.381 0.00 0.00 0.00 3.46
224 225 2.025699 CCCTCGGGTATTTTTCCTTCCA 60.026 50.000 0.00 0.00 0.00 3.53
225 226 3.279434 CCTCGGGTATTTTTCCTTCCAG 58.721 50.000 0.00 0.00 0.00 3.86
226 227 3.308188 CCTCGGGTATTTTTCCTTCCAGT 60.308 47.826 0.00 0.00 0.00 4.00
227 228 4.080751 CCTCGGGTATTTTTCCTTCCAGTA 60.081 45.833 0.00 0.00 0.00 2.74
228 229 5.397559 CCTCGGGTATTTTTCCTTCCAGTAT 60.398 44.000 0.00 0.00 0.00 2.12
229 230 5.677567 TCGGGTATTTTTCCTTCCAGTATC 58.322 41.667 0.00 0.00 0.00 2.24
230 231 5.427481 TCGGGTATTTTTCCTTCCAGTATCT 59.573 40.000 0.00 0.00 0.00 1.98
231 232 6.069847 TCGGGTATTTTTCCTTCCAGTATCTT 60.070 38.462 0.00 0.00 0.00 2.40
232 233 6.602009 CGGGTATTTTTCCTTCCAGTATCTTT 59.398 38.462 0.00 0.00 0.00 2.52
233 234 7.771826 CGGGTATTTTTCCTTCCAGTATCTTTA 59.228 37.037 0.00 0.00 0.00 1.85
234 235 9.642343 GGGTATTTTTCCTTCCAGTATCTTTAT 57.358 33.333 0.00 0.00 0.00 1.40
279 280 9.522804 TTGTAAATTTTTACGACATTTTGAGCT 57.477 25.926 0.00 0.00 44.52 4.09
280 281 9.522804 TGTAAATTTTTACGACATTTTGAGCTT 57.477 25.926 0.00 0.00 44.52 3.74
281 282 9.989394 GTAAATTTTTACGACATTTTGAGCTTC 57.011 29.630 0.00 0.00 34.37 3.86
282 283 8.641499 AAATTTTTACGACATTTTGAGCTTCA 57.359 26.923 0.00 0.00 0.00 3.02
283 284 8.641499 AATTTTTACGACATTTTGAGCTTCAA 57.359 26.923 0.00 0.00 34.03 2.69
284 285 8.641499 ATTTTTACGACATTTTGAGCTTCAAA 57.359 26.923 7.09 7.09 43.84 2.69
285 286 7.678194 TTTTACGACATTTTGAGCTTCAAAG 57.322 32.000 10.02 4.76 45.77 2.77
286 287 6.612247 TTACGACATTTTGAGCTTCAAAGA 57.388 33.333 10.02 4.72 45.77 2.52
287 288 5.499139 ACGACATTTTGAGCTTCAAAGAA 57.501 34.783 10.02 0.66 45.77 2.52
288 289 6.076981 ACGACATTTTGAGCTTCAAAGAAT 57.923 33.333 10.02 2.48 45.77 2.40
289 290 6.507023 ACGACATTTTGAGCTTCAAAGAATT 58.493 32.000 10.02 0.00 45.77 2.17
290 291 6.418819 ACGACATTTTGAGCTTCAAAGAATTG 59.581 34.615 10.02 9.46 45.77 2.32
291 292 6.535274 ACATTTTGAGCTTCAAAGAATTGC 57.465 33.333 10.02 0.00 45.77 3.56
292 293 6.285990 ACATTTTGAGCTTCAAAGAATTGCT 58.714 32.000 10.02 0.00 45.77 3.91
293 294 7.436118 ACATTTTGAGCTTCAAAGAATTGCTA 58.564 30.769 10.02 0.00 45.77 3.49
294 295 8.092687 ACATTTTGAGCTTCAAAGAATTGCTAT 58.907 29.630 10.02 0.00 45.77 2.97
295 296 8.592998 CATTTTGAGCTTCAAAGAATTGCTATC 58.407 33.333 10.02 0.00 45.77 2.08
296 297 7.458409 TTTGAGCTTCAAAGAATTGCTATCT 57.542 32.000 7.09 0.00 41.02 1.98
297 298 6.674694 TGAGCTTCAAAGAATTGCTATCTC 57.325 37.500 0.00 0.00 36.45 2.75
298 299 6.413052 TGAGCTTCAAAGAATTGCTATCTCT 58.587 36.000 0.00 0.00 36.45 3.10
299 300 6.883217 TGAGCTTCAAAGAATTGCTATCTCTT 59.117 34.615 0.00 0.00 36.45 2.85
300 301 7.392673 TGAGCTTCAAAGAATTGCTATCTCTTT 59.607 33.333 10.23 10.23 39.42 2.52
301 302 8.120140 AGCTTCAAAGAATTGCTATCTCTTTT 57.880 30.769 12.10 1.51 37.31 2.27
302 303 8.583296 AGCTTCAAAGAATTGCTATCTCTTTTT 58.417 29.630 12.10 0.00 37.31 1.94
303 304 8.645487 GCTTCAAAGAATTGCTATCTCTTTTTG 58.355 33.333 12.10 3.33 37.31 2.44
304 305 8.524870 TTCAAAGAATTGCTATCTCTTTTTGC 57.475 30.769 12.10 0.00 37.31 3.68
305 306 6.803320 TCAAAGAATTGCTATCTCTTTTTGCG 59.197 34.615 12.10 5.71 37.31 4.85
306 307 5.240713 AGAATTGCTATCTCTTTTTGCGG 57.759 39.130 0.00 0.00 0.00 5.69
307 308 4.096984 AGAATTGCTATCTCTTTTTGCGGG 59.903 41.667 0.00 0.00 0.00 6.13
308 309 2.489938 TGCTATCTCTTTTTGCGGGT 57.510 45.000 0.00 0.00 0.00 5.28
309 310 2.356135 TGCTATCTCTTTTTGCGGGTC 58.644 47.619 0.00 0.00 0.00 4.46
310 311 2.290008 TGCTATCTCTTTTTGCGGGTCA 60.290 45.455 0.00 0.00 0.00 4.02
311 312 2.352960 GCTATCTCTTTTTGCGGGTCAG 59.647 50.000 0.00 0.00 0.00 3.51
312 313 2.859165 ATCTCTTTTTGCGGGTCAGA 57.141 45.000 0.00 0.00 0.00 3.27
313 314 2.859165 TCTCTTTTTGCGGGTCAGAT 57.141 45.000 0.00 0.00 0.00 2.90
314 315 3.140325 TCTCTTTTTGCGGGTCAGATT 57.860 42.857 0.00 0.00 0.00 2.40
315 316 3.486383 TCTCTTTTTGCGGGTCAGATTT 58.514 40.909 0.00 0.00 0.00 2.17
316 317 3.502211 TCTCTTTTTGCGGGTCAGATTTC 59.498 43.478 0.00 0.00 0.00 2.17
317 318 3.486383 TCTTTTTGCGGGTCAGATTTCT 58.514 40.909 0.00 0.00 0.00 2.52
318 319 4.647611 TCTTTTTGCGGGTCAGATTTCTA 58.352 39.130 0.00 0.00 0.00 2.10
319 320 4.695455 TCTTTTTGCGGGTCAGATTTCTAG 59.305 41.667 0.00 0.00 0.00 2.43
320 321 2.024176 TTGCGGGTCAGATTTCTAGC 57.976 50.000 0.00 0.00 0.00 3.42
321 322 1.195115 TGCGGGTCAGATTTCTAGCT 58.805 50.000 0.00 0.00 0.00 3.32
322 323 1.134699 TGCGGGTCAGATTTCTAGCTG 60.135 52.381 0.00 0.00 39.15 4.24
323 324 1.576356 CGGGTCAGATTTCTAGCTGC 58.424 55.000 0.00 0.00 37.70 5.25
324 325 1.137872 CGGGTCAGATTTCTAGCTGCT 59.862 52.381 7.57 7.57 37.70 4.24
325 326 2.559440 GGGTCAGATTTCTAGCTGCTG 58.441 52.381 13.43 2.51 37.70 4.41
326 327 2.559440 GGTCAGATTTCTAGCTGCTGG 58.441 52.381 13.43 9.98 37.70 4.85
327 328 2.093235 GGTCAGATTTCTAGCTGCTGGT 60.093 50.000 13.43 0.00 37.70 4.00
328 329 3.133003 GGTCAGATTTCTAGCTGCTGGTA 59.867 47.826 13.43 0.00 37.70 3.25
329 330 4.383118 GGTCAGATTTCTAGCTGCTGGTAA 60.383 45.833 13.43 10.08 37.70 2.85
330 331 5.363939 GTCAGATTTCTAGCTGCTGGTAAT 58.636 41.667 15.64 15.64 37.70 1.89
331 332 5.465056 GTCAGATTTCTAGCTGCTGGTAATC 59.535 44.000 26.54 26.54 37.70 1.75
332 333 4.754114 CAGATTTCTAGCTGCTGGTAATCC 59.246 45.833 28.56 17.46 32.36 3.01
333 334 3.560636 TTTCTAGCTGCTGGTAATCCC 57.439 47.619 13.43 0.00 0.00 3.85
334 335 2.478872 TCTAGCTGCTGGTAATCCCT 57.521 50.000 13.43 0.00 0.00 4.20
335 336 2.764269 TCTAGCTGCTGGTAATCCCTT 58.236 47.619 13.43 0.00 0.00 3.95
336 337 2.700897 TCTAGCTGCTGGTAATCCCTTC 59.299 50.000 13.43 0.00 0.00 3.46
337 338 1.589414 AGCTGCTGGTAATCCCTTCT 58.411 50.000 0.00 0.00 0.00 2.85
338 339 1.488393 AGCTGCTGGTAATCCCTTCTC 59.512 52.381 0.00 0.00 0.00 2.87
339 340 1.488393 GCTGCTGGTAATCCCTTCTCT 59.512 52.381 0.00 0.00 0.00 3.10
340 341 2.092699 GCTGCTGGTAATCCCTTCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
341 342 3.623453 GCTGCTGGTAATCCCTTCTCTTT 60.623 47.826 0.00 0.00 0.00 2.52
342 343 4.593956 CTGCTGGTAATCCCTTCTCTTTT 58.406 43.478 0.00 0.00 0.00 2.27
343 344 5.745227 CTGCTGGTAATCCCTTCTCTTTTA 58.255 41.667 0.00 0.00 0.00 1.52
344 345 6.327386 TGCTGGTAATCCCTTCTCTTTTAT 57.673 37.500 0.00 0.00 0.00 1.40
345 346 6.731467 TGCTGGTAATCCCTTCTCTTTTATT 58.269 36.000 0.00 0.00 0.00 1.40
346 347 6.603201 TGCTGGTAATCCCTTCTCTTTTATTG 59.397 38.462 0.00 0.00 0.00 1.90
347 348 6.603599 GCTGGTAATCCCTTCTCTTTTATTGT 59.396 38.462 0.00 0.00 0.00 2.71
348 349 7.773690 GCTGGTAATCCCTTCTCTTTTATTGTA 59.226 37.037 0.00 0.00 0.00 2.41
349 350 9.853177 CTGGTAATCCCTTCTCTTTTATTGTAT 57.147 33.333 0.00 0.00 0.00 2.29
350 351 9.847224 TGGTAATCCCTTCTCTTTTATTGTATC 57.153 33.333 0.00 0.00 0.00 2.24
354 355 7.865706 TCCCTTCTCTTTTATTGTATCTTGC 57.134 36.000 0.00 0.00 0.00 4.01
355 356 7.402054 TCCCTTCTCTTTTATTGTATCTTGCA 58.598 34.615 0.00 0.00 0.00 4.08
356 357 8.055181 TCCCTTCTCTTTTATTGTATCTTGCAT 58.945 33.333 0.00 0.00 0.00 3.96
357 358 8.689972 CCCTTCTCTTTTATTGTATCTTGCATT 58.310 33.333 0.00 0.00 0.00 3.56
370 371 9.725019 TTGTATCTTGCATTTTAAGAGAGAAGA 57.275 29.630 0.00 0.00 37.56 2.87
371 372 9.376075 TGTATCTTGCATTTTAAGAGAGAAGAG 57.624 33.333 0.00 0.00 37.56 2.85
372 373 9.593134 GTATCTTGCATTTTAAGAGAGAAGAGA 57.407 33.333 0.00 0.00 37.56 3.10
373 374 7.897575 TCTTGCATTTTAAGAGAGAAGAGAC 57.102 36.000 0.00 0.00 31.04 3.36
374 375 7.445121 TCTTGCATTTTAAGAGAGAAGAGACA 58.555 34.615 0.00 0.00 31.04 3.41
375 376 8.099537 TCTTGCATTTTAAGAGAGAAGAGACAT 58.900 33.333 0.00 0.00 31.04 3.06
376 377 8.627208 TTGCATTTTAAGAGAGAAGAGACATT 57.373 30.769 0.00 0.00 0.00 2.71
377 378 9.725019 TTGCATTTTAAGAGAGAAGAGACATTA 57.275 29.630 0.00 0.00 0.00 1.90
378 379 9.376075 TGCATTTTAAGAGAGAAGAGACATTAG 57.624 33.333 0.00 0.00 0.00 1.73
480 486 3.144285 GGTCGAACACCCTGTCCA 58.856 61.111 0.00 0.00 39.69 4.02
491 499 0.037232 CCCTGTCCACGAAGAGGTTC 60.037 60.000 0.00 0.00 39.94 3.62
504 512 0.875059 GAGGTTCGCTCCTTTGTTGG 59.125 55.000 0.16 0.00 38.02 3.77
514 522 2.880890 CTCCTTTGTTGGTCCTGAACAG 59.119 50.000 0.00 0.00 34.85 3.16
533 545 2.588989 GCAAGCCCTCCTCCTGAG 59.411 66.667 0.00 0.00 41.07 3.35
537 549 0.693767 AAGCCCTCCTCCTGAGATGG 60.694 60.000 0.00 0.00 44.42 3.51
540 552 0.762461 CCCTCCTCCTGAGATGGACC 60.762 65.000 0.00 0.00 44.42 4.46
541 553 0.031716 CCTCCTCCTGAGATGGACCA 60.032 60.000 0.00 0.00 44.42 4.02
542 554 1.623557 CCTCCTCCTGAGATGGACCAA 60.624 57.143 0.00 0.00 44.42 3.67
543 555 1.761784 CTCCTCCTGAGATGGACCAAG 59.238 57.143 0.00 0.00 44.42 3.61
582 594 4.916041 ATTCAGAACCCAGTCAAGATCA 57.084 40.909 0.00 0.00 0.00 2.92
593 605 5.521735 CCCAGTCAAGATCATTAGAGAAACG 59.478 44.000 0.00 0.00 0.00 3.60
608 620 2.053627 GAAACGCAATTGTGGAGCTTG 58.946 47.619 22.27 0.00 0.00 4.01
650 662 4.957954 AGACTGATCTCTGAATCTGAAGCT 59.042 41.667 0.00 0.00 0.00 3.74
651 663 5.068198 AGACTGATCTCTGAATCTGAAGCTC 59.932 44.000 0.00 0.00 0.00 4.09
653 665 3.067883 TGATCTCTGAATCTGAAGCTCGG 59.932 47.826 0.00 0.00 0.00 4.63
655 667 1.480137 CTCTGAATCTGAAGCTCGGGT 59.520 52.381 0.00 0.00 0.00 5.28
657 669 0.173481 TGAATCTGAAGCTCGGGTCG 59.827 55.000 0.00 0.00 0.00 4.79
658 670 0.173708 GAATCTGAAGCTCGGGTCGT 59.826 55.000 0.00 0.00 0.00 4.34
659 671 0.173708 AATCTGAAGCTCGGGTCGTC 59.826 55.000 0.00 0.00 0.00 4.20
663 1195 1.446272 GAAGCTCGGGTCGTCCTTG 60.446 63.158 0.00 0.00 0.00 3.61
665 1197 1.469335 AAGCTCGGGTCGTCCTTGAA 61.469 55.000 0.00 0.00 0.00 2.69
674 1206 2.233922 GGTCGTCCTTGAAGATGGAGAA 59.766 50.000 0.00 0.00 32.36 2.87
675 1207 3.516615 GTCGTCCTTGAAGATGGAGAAG 58.483 50.000 0.00 0.00 32.36 2.85
676 1208 3.056465 GTCGTCCTTGAAGATGGAGAAGT 60.056 47.826 0.00 0.00 32.36 3.01
693 1269 0.886490 AGTTGGGCTTCTTGTGCTCG 60.886 55.000 0.00 0.00 32.72 5.03
706 1282 2.485582 GCTCGTGCAGCGTCTCTA 59.514 61.111 4.26 0.00 38.76 2.43
707 1283 1.870016 GCTCGTGCAGCGTCTCTAC 60.870 63.158 4.26 0.00 38.76 2.59
708 1284 1.797441 CTCGTGCAGCGTCTCTACT 59.203 57.895 8.22 0.00 42.13 2.57
764 1340 0.249699 TTGTGTCGACAATCGGCTGT 60.250 50.000 21.95 0.00 45.98 4.40
773 1352 1.067821 ACAATCGGCTGTAGCTAGCTC 59.932 52.381 23.26 13.51 43.22 4.09
786 1365 0.032678 CTAGCTCGGAATGGATGCGT 59.967 55.000 0.00 0.00 44.13 5.24
789 1368 1.889105 CTCGGAATGGATGCGTGGG 60.889 63.158 0.00 0.00 44.13 4.61
790 1369 2.124736 CGGAATGGATGCGTGGGT 60.125 61.111 0.00 0.00 38.18 4.51
791 1370 2.472059 CGGAATGGATGCGTGGGTG 61.472 63.158 0.00 0.00 38.18 4.61
792 1371 2.774799 GGAATGGATGCGTGGGTGC 61.775 63.158 0.00 0.00 0.00 5.01
827 1406 6.183360 TGGTCGCGTACAGGAGTATAATTAAA 60.183 38.462 5.77 0.00 31.84 1.52
877 2496 1.452833 GCTGGTGCTCAATCCTCCC 60.453 63.158 0.00 0.00 36.03 4.30
885 2504 2.027385 GCTCAATCCTCCCAACCAATC 58.973 52.381 0.00 0.00 0.00 2.67
919 2538 0.820891 CGGCCATCCAATCTTCCAGG 60.821 60.000 2.24 0.00 0.00 4.45
966 2585 2.887738 ATCTCGCCTTCCCAGCTCCT 62.888 60.000 0.00 0.00 0.00 3.69
1059 3875 2.499205 GACGGTCGGCATGGATCA 59.501 61.111 0.00 0.00 0.00 2.92
1361 4177 2.202987 GCCTCCTCCTGATGTGCG 60.203 66.667 0.00 0.00 0.00 5.34
1525 4341 4.332819 GTGTTCTTGATCCCTAACATTCCG 59.667 45.833 7.00 0.00 34.62 4.30
1636 4452 1.170290 TCGTGCACGTCTTCTCCTCA 61.170 55.000 35.74 12.39 40.80 3.86
1663 4479 3.745723 TTGCTGGAAGGAAAGACCC 57.254 52.632 0.00 0.00 43.05 4.46
1792 4608 2.736721 TCGTTGCGAAGAGGAATTTCTG 59.263 45.455 0.00 0.00 31.06 3.02
1793 4609 2.736721 CGTTGCGAAGAGGAATTTCTGA 59.263 45.455 0.00 0.00 31.33 3.27
1801 4617 5.751028 CGAAGAGGAATTTCTGATGAGGTAC 59.249 44.000 0.00 0.00 0.00 3.34
1838 4656 1.492176 CCCATCTTAGGCACCAGATGT 59.508 52.381 15.37 0.00 42.14 3.06
2010 4860 1.459450 GGGTGTATTGTGCATTCCGT 58.541 50.000 0.00 0.00 0.00 4.69
2053 4903 4.641989 AGATTTGGTTCCTTGATGAATCGG 59.358 41.667 0.00 0.00 0.00 4.18
2172 5022 2.246469 CAGTCGGAGGATCAGATGGAT 58.754 52.381 0.00 0.00 42.36 3.41
2189 5039 3.689347 TGGATCTGGTGTTGAAGAATGG 58.311 45.455 0.00 0.00 0.00 3.16
2539 5389 9.566432 ACCCTTTGATTATATTTTTGTTTGCAA 57.434 25.926 0.00 0.00 0.00 4.08
2746 5596 4.853196 CCTTTGCATTGTAGTTCATTCACG 59.147 41.667 0.00 0.00 0.00 4.35
2761 5611 7.664318 AGTTCATTCACGGAATTTAGGTACTTT 59.336 33.333 0.00 0.00 32.29 2.66
2777 5627 7.046292 AGGTACTTTTCATTGTTTGGTTACC 57.954 36.000 0.00 0.00 27.25 2.85
2843 5693 5.001237 TCTTTATCGCTCGTTATGACCAA 57.999 39.130 0.00 0.00 0.00 3.67
2853 5703 5.179555 GCTCGTTATGACCAATTTATCCTCC 59.820 44.000 0.00 0.00 0.00 4.30
2862 5712 3.381272 CCAATTTATCCTCCACGTGCAAT 59.619 43.478 10.91 2.85 0.00 3.56
2863 5713 4.142182 CCAATTTATCCTCCACGTGCAATT 60.142 41.667 10.91 2.76 0.00 2.32
2864 5714 5.410067 CAATTTATCCTCCACGTGCAATTT 58.590 37.500 10.91 0.00 0.00 1.82
2865 5715 5.659440 ATTTATCCTCCACGTGCAATTTT 57.341 34.783 10.91 0.00 0.00 1.82
2866 5716 5.461032 TTTATCCTCCACGTGCAATTTTT 57.539 34.783 10.91 0.00 0.00 1.94
2903 5753 6.956299 AACATATTTGAGCACAAGAAATGC 57.044 33.333 12.00 0.00 43.74 3.56
3044 5894 4.466015 ACAAGGCTTCCAAGAAACAAAGAA 59.534 37.500 0.00 0.00 0.00 2.52
3131 5981 9.342308 CTAATATCTCAAGCTTGGATGGTTTTA 57.658 33.333 27.19 19.93 0.00 1.52
3243 6093 2.079925 GGGATTCACAGCTGAGACAAC 58.920 52.381 23.35 11.22 0.00 3.32
3247 6097 4.937620 GGATTCACAGCTGAGACAACATAA 59.062 41.667 23.35 0.79 0.00 1.90
3292 6142 6.830324 TCACATCTATTTTGCTTAGCTCCATT 59.170 34.615 5.60 0.00 0.00 3.16
3356 6206 6.437928 TCAAAAGTTTCTGTTGATTCCATCG 58.562 36.000 0.00 0.00 33.33 3.84
3429 6279 8.627208 ACTTGATAGAAAATGTCTGTTCATGT 57.373 30.769 0.00 2.84 37.12 3.21
3454 6304 5.405935 ACTAATGGGATCTTTTTGGTTGC 57.594 39.130 0.00 0.00 0.00 4.17
3553 6403 9.900710 TTTTATTTTCGACTGCAGCTTTTAATA 57.099 25.926 15.27 9.94 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.090831 ACATAGCATCCTGAGAGAGGGT 60.091 50.000 0.00 0.00 43.06 4.34
5 6 3.229293 TGACATAGCATCCTGAGAGAGG 58.771 50.000 0.00 0.00 44.45 3.69
19 20 4.639310 AGAAGCTTGGATTTGCTGACATAG 59.361 41.667 2.10 0.00 39.71 2.23
20 21 4.397103 CAGAAGCTTGGATTTGCTGACATA 59.603 41.667 2.10 0.00 39.71 2.29
21 22 3.192844 CAGAAGCTTGGATTTGCTGACAT 59.807 43.478 2.10 0.00 39.71 3.06
22 23 2.555325 CAGAAGCTTGGATTTGCTGACA 59.445 45.455 2.10 0.00 39.71 3.58
23 24 2.670509 GCAGAAGCTTGGATTTGCTGAC 60.671 50.000 2.10 0.00 39.71 3.51
24 25 1.542915 GCAGAAGCTTGGATTTGCTGA 59.457 47.619 2.10 0.00 39.71 4.26
25 26 1.403780 GGCAGAAGCTTGGATTTGCTG 60.404 52.381 2.10 4.01 39.71 4.41
26 27 0.893447 GGCAGAAGCTTGGATTTGCT 59.107 50.000 2.10 0.00 41.82 3.91
27 28 0.108472 GGGCAGAAGCTTGGATTTGC 60.108 55.000 2.10 5.84 41.70 3.68
28 29 1.203994 CTGGGCAGAAGCTTGGATTTG 59.796 52.381 2.10 0.00 41.70 2.32
29 30 1.553706 CTGGGCAGAAGCTTGGATTT 58.446 50.000 2.10 0.00 41.70 2.17
30 31 0.324091 CCTGGGCAGAAGCTTGGATT 60.324 55.000 2.10 0.00 41.70 3.01
31 32 1.305623 CCTGGGCAGAAGCTTGGAT 59.694 57.895 2.10 0.00 41.70 3.41
32 33 1.719063 AACCTGGGCAGAAGCTTGGA 61.719 55.000 2.10 0.00 41.70 3.53
33 34 1.228675 AACCTGGGCAGAAGCTTGG 60.229 57.895 2.10 0.00 41.70 3.61
34 35 1.246737 GGAACCTGGGCAGAAGCTTG 61.247 60.000 2.10 0.00 41.70 4.01
35 36 1.075659 GGAACCTGGGCAGAAGCTT 59.924 57.895 0.00 0.00 41.70 3.74
36 37 2.759795 GGAACCTGGGCAGAAGCT 59.240 61.111 0.00 0.00 41.70 3.74
37 38 2.747855 CGGAACCTGGGCAGAAGC 60.748 66.667 0.00 0.00 41.10 3.86
38 39 2.747855 GCGGAACCTGGGCAGAAG 60.748 66.667 0.00 0.00 0.00 2.85
39 40 4.344865 GGCGGAACCTGGGCAGAA 62.345 66.667 0.00 0.00 34.51 3.02
53 54 4.813526 CGTCACCGTCTCGAGGCG 62.814 72.222 31.52 31.52 0.00 5.52
54 55 4.477975 CCGTCACCGTCTCGAGGC 62.478 72.222 13.56 10.43 0.00 4.70
55 56 4.477975 GCCGTCACCGTCTCGAGG 62.478 72.222 13.56 0.00 0.00 4.63
56 57 3.384014 GAGCCGTCACCGTCTCGAG 62.384 68.421 5.93 5.93 28.59 4.04
57 58 3.429141 GAGCCGTCACCGTCTCGA 61.429 66.667 0.00 0.00 28.59 4.04
58 59 2.473664 AAAGAGCCGTCACCGTCTCG 62.474 60.000 0.00 0.00 43.50 4.04
59 60 0.733223 GAAAGAGCCGTCACCGTCTC 60.733 60.000 0.00 0.00 39.29 3.36
60 61 1.289380 GAAAGAGCCGTCACCGTCT 59.711 57.895 0.00 0.00 0.00 4.18
61 62 1.737008 GGAAAGAGCCGTCACCGTC 60.737 63.158 0.00 0.00 0.00 4.79
62 63 2.342648 GGAAAGAGCCGTCACCGT 59.657 61.111 0.00 0.00 0.00 4.83
63 64 2.809601 CGGAAAGAGCCGTCACCG 60.810 66.667 0.00 0.00 46.07 4.94
70 71 1.002011 AGGCCTTTCGGAAAGAGCC 60.002 57.895 32.99 32.99 46.41 4.70
71 72 0.035915 AGAGGCCTTTCGGAAAGAGC 60.036 55.000 27.56 25.46 41.02 4.09
72 73 1.406205 GGAGAGGCCTTTCGGAAAGAG 60.406 57.143 27.56 19.03 41.02 2.85
73 74 0.613777 GGAGAGGCCTTTCGGAAAGA 59.386 55.000 27.56 0.00 41.02 2.52
74 75 3.160872 GGAGAGGCCTTTCGGAAAG 57.839 57.895 20.91 20.91 38.24 2.62
96 97 3.708631 TGAAGTCATTTGCCCAGGAAAAA 59.291 39.130 0.00 0.00 0.00 1.94
97 98 3.303938 TGAAGTCATTTGCCCAGGAAAA 58.696 40.909 0.00 0.00 0.00 2.29
98 99 2.956132 TGAAGTCATTTGCCCAGGAAA 58.044 42.857 0.00 0.00 0.00 3.13
99 100 2.673775 TGAAGTCATTTGCCCAGGAA 57.326 45.000 0.00 0.00 0.00 3.36
100 101 2.905415 ATGAAGTCATTTGCCCAGGA 57.095 45.000 0.00 0.00 31.37 3.86
101 102 4.217118 GCTATATGAAGTCATTTGCCCAGG 59.783 45.833 0.00 0.00 37.76 4.45
102 103 4.823442 TGCTATATGAAGTCATTTGCCCAG 59.177 41.667 0.00 0.00 37.76 4.45
103 104 4.790937 TGCTATATGAAGTCATTTGCCCA 58.209 39.130 0.00 0.00 37.76 5.36
104 105 5.065914 TCTGCTATATGAAGTCATTTGCCC 58.934 41.667 0.00 0.00 37.76 5.36
105 106 6.038603 TGTTCTGCTATATGAAGTCATTTGCC 59.961 38.462 0.00 0.00 37.76 4.52
106 107 7.019774 TGTTCTGCTATATGAAGTCATTTGC 57.980 36.000 0.00 3.15 37.76 3.68
107 108 8.833493 TGATGTTCTGCTATATGAAGTCATTTG 58.167 33.333 0.00 0.00 37.76 2.32
108 109 8.969260 TGATGTTCTGCTATATGAAGTCATTT 57.031 30.769 0.00 0.00 37.76 2.32
109 110 7.172875 GCTGATGTTCTGCTATATGAAGTCATT 59.827 37.037 0.00 0.00 38.17 2.57
110 111 6.649973 GCTGATGTTCTGCTATATGAAGTCAT 59.350 38.462 0.00 0.00 38.17 3.06
111 112 5.987953 GCTGATGTTCTGCTATATGAAGTCA 59.012 40.000 0.00 0.00 38.17 3.41
112 113 5.987953 TGCTGATGTTCTGCTATATGAAGTC 59.012 40.000 7.70 0.00 41.21 3.01
113 114 5.922053 TGCTGATGTTCTGCTATATGAAGT 58.078 37.500 7.70 0.00 41.21 3.01
114 115 6.649557 TGATGCTGATGTTCTGCTATATGAAG 59.350 38.462 7.70 0.00 41.21 3.02
115 116 6.527423 TGATGCTGATGTTCTGCTATATGAA 58.473 36.000 7.70 0.00 41.21 2.57
116 117 6.105397 TGATGCTGATGTTCTGCTATATGA 57.895 37.500 7.70 0.00 41.21 2.15
117 118 5.932883 ACTGATGCTGATGTTCTGCTATATG 59.067 40.000 7.70 0.00 41.21 1.78
118 119 5.932883 CACTGATGCTGATGTTCTGCTATAT 59.067 40.000 7.70 0.00 41.21 0.86
119 120 5.295152 CACTGATGCTGATGTTCTGCTATA 58.705 41.667 7.70 0.00 41.21 1.31
120 121 4.127907 CACTGATGCTGATGTTCTGCTAT 58.872 43.478 7.70 1.19 41.21 2.97
121 122 3.528532 CACTGATGCTGATGTTCTGCTA 58.471 45.455 7.70 0.00 41.21 3.49
122 123 2.357075 CACTGATGCTGATGTTCTGCT 58.643 47.619 7.70 0.00 41.21 4.24
123 124 2.826979 CACTGATGCTGATGTTCTGC 57.173 50.000 0.03 0.03 41.04 4.26
135 136 1.303799 GCCACAGAGGTGCACTGATG 61.304 60.000 17.98 14.50 43.88 3.07
136 137 1.002868 GCCACAGAGGTGCACTGAT 60.003 57.895 17.98 2.87 43.88 2.90
137 138 2.427320 GCCACAGAGGTGCACTGA 59.573 61.111 17.98 0.00 43.88 3.41
138 139 2.670934 GGCCACAGAGGTGCACTG 60.671 66.667 17.98 10.00 43.88 3.66
139 140 3.958860 GGGCCACAGAGGTGCACT 61.959 66.667 17.98 2.27 43.88 4.40
140 141 2.592993 TAGGGCCACAGAGGTGCAC 61.593 63.158 8.80 8.80 43.88 4.57
141 142 2.203922 TAGGGCCACAGAGGTGCA 60.204 61.111 6.18 0.00 43.88 4.57
142 143 2.124507 TTGTAGGGCCACAGAGGTGC 62.125 60.000 6.18 0.00 43.88 5.01
143 144 0.036010 CTTGTAGGGCCACAGAGGTG 60.036 60.000 6.18 0.00 44.85 4.00
144 145 1.842381 GCTTGTAGGGCCACAGAGGT 61.842 60.000 6.18 0.00 40.61 3.85
145 146 1.078143 GCTTGTAGGGCCACAGAGG 60.078 63.158 6.18 4.30 41.84 3.69
146 147 4.625800 GCTTGTAGGGCCACAGAG 57.374 61.111 6.18 9.41 0.00 3.35
153 154 2.439156 CAGGCAGGCTTGTAGGGC 60.439 66.667 0.00 0.00 0.00 5.19
154 155 2.273449 CCAGGCAGGCTTGTAGGG 59.727 66.667 0.00 0.00 0.00 3.53
155 156 2.273449 CCCAGGCAGGCTTGTAGG 59.727 66.667 0.00 0.00 35.39 3.18
181 182 2.044946 CACCTAGGGCCCACAAGC 60.045 66.667 27.56 0.00 0.00 4.01
182 183 2.677228 CCACCTAGGGCCCACAAG 59.323 66.667 27.56 17.95 0.00 3.16
190 191 2.446802 GAGGGGAGCCACCTAGGG 60.447 72.222 14.81 1.73 38.79 3.53
191 192 2.840102 CGAGGGGAGCCACCTAGG 60.840 72.222 7.41 7.41 38.79 3.02
192 193 2.840102 CCGAGGGGAGCCACCTAG 60.840 72.222 0.00 0.00 38.79 3.02
203 204 2.025699 TGGAAGGAAAAATACCCGAGGG 60.026 50.000 6.63 6.63 42.03 4.30
204 205 3.279434 CTGGAAGGAAAAATACCCGAGG 58.721 50.000 0.00 0.00 0.00 4.63
205 206 3.951663 ACTGGAAGGAAAAATACCCGAG 58.048 45.455 0.00 0.00 39.30 4.63
206 207 5.427481 AGATACTGGAAGGAAAAATACCCGA 59.573 40.000 0.00 0.00 39.30 5.14
207 208 5.681639 AGATACTGGAAGGAAAAATACCCG 58.318 41.667 0.00 0.00 39.30 5.28
208 209 7.956328 AAAGATACTGGAAGGAAAAATACCC 57.044 36.000 0.00 0.00 39.30 3.69
253 254 9.522804 AGCTCAAAATGTCGTAAAAATTTACAA 57.477 25.926 14.46 0.00 42.34 2.41
254 255 9.522804 AAGCTCAAAATGTCGTAAAAATTTACA 57.477 25.926 14.46 0.00 42.34 2.41
255 256 9.989394 GAAGCTCAAAATGTCGTAAAAATTTAC 57.011 29.630 6.07 6.07 39.62 2.01
256 257 9.737427 TGAAGCTCAAAATGTCGTAAAAATTTA 57.263 25.926 0.00 0.00 0.00 1.40
257 258 8.641499 TGAAGCTCAAAATGTCGTAAAAATTT 57.359 26.923 0.00 0.00 0.00 1.82
258 259 8.641499 TTGAAGCTCAAAATGTCGTAAAAATT 57.359 26.923 0.00 0.00 32.71 1.82
259 260 8.641499 TTTGAAGCTCAAAATGTCGTAAAAAT 57.359 26.923 8.34 0.00 42.72 1.82
260 261 7.971168 TCTTTGAAGCTCAAAATGTCGTAAAAA 59.029 29.630 10.97 0.00 44.69 1.94
261 262 7.476667 TCTTTGAAGCTCAAAATGTCGTAAAA 58.523 30.769 10.97 0.00 44.69 1.52
262 263 7.022055 TCTTTGAAGCTCAAAATGTCGTAAA 57.978 32.000 10.97 0.00 44.69 2.01
263 264 6.612247 TCTTTGAAGCTCAAAATGTCGTAA 57.388 33.333 10.97 0.00 44.69 3.18
264 265 6.612247 TTCTTTGAAGCTCAAAATGTCGTA 57.388 33.333 10.97 0.00 44.69 3.43
265 266 5.499139 TTCTTTGAAGCTCAAAATGTCGT 57.501 34.783 10.97 0.00 44.69 4.34
266 267 6.614999 GCAATTCTTTGAAGCTCAAAATGTCG 60.615 38.462 10.97 2.49 44.69 4.35
267 268 6.423001 AGCAATTCTTTGAAGCTCAAAATGTC 59.577 34.615 10.97 0.00 44.69 3.06
268 269 6.285990 AGCAATTCTTTGAAGCTCAAAATGT 58.714 32.000 10.97 0.87 44.69 2.71
269 270 6.780706 AGCAATTCTTTGAAGCTCAAAATG 57.219 33.333 10.97 9.19 44.69 2.32
270 271 8.529476 AGATAGCAATTCTTTGAAGCTCAAAAT 58.471 29.630 10.97 2.96 44.69 1.82
271 272 7.889469 AGATAGCAATTCTTTGAAGCTCAAAA 58.111 30.769 10.97 3.91 44.69 2.44
272 273 7.392673 AGAGATAGCAATTCTTTGAAGCTCAAA 59.607 33.333 9.84 9.84 43.37 2.69
273 274 6.883217 AGAGATAGCAATTCTTTGAAGCTCAA 59.117 34.615 0.00 0.00 36.25 3.02
274 275 6.413052 AGAGATAGCAATTCTTTGAAGCTCA 58.587 36.000 0.00 0.00 36.25 4.26
275 276 6.923928 AGAGATAGCAATTCTTTGAAGCTC 57.076 37.500 0.00 0.00 35.08 4.09
276 277 7.700022 AAAGAGATAGCAATTCTTTGAAGCT 57.300 32.000 0.00 0.00 39.12 3.74
277 278 8.645487 CAAAAAGAGATAGCAATTCTTTGAAGC 58.355 33.333 6.36 0.00 40.12 3.86
278 279 8.645487 GCAAAAAGAGATAGCAATTCTTTGAAG 58.355 33.333 6.36 0.00 40.12 3.02
279 280 7.326789 CGCAAAAAGAGATAGCAATTCTTTGAA 59.673 33.333 6.36 0.00 40.12 2.69
280 281 6.803320 CGCAAAAAGAGATAGCAATTCTTTGA 59.197 34.615 6.36 0.00 40.12 2.69
281 282 6.034256 CCGCAAAAAGAGATAGCAATTCTTTG 59.966 38.462 6.36 0.00 40.12 2.77
282 283 6.095377 CCGCAAAAAGAGATAGCAATTCTTT 58.905 36.000 0.00 0.00 41.53 2.52
283 284 5.393461 CCCGCAAAAAGAGATAGCAATTCTT 60.393 40.000 0.00 0.00 32.80 2.52
284 285 4.096984 CCCGCAAAAAGAGATAGCAATTCT 59.903 41.667 0.00 0.00 0.00 2.40
285 286 4.142381 ACCCGCAAAAAGAGATAGCAATTC 60.142 41.667 0.00 0.00 0.00 2.17
286 287 3.763897 ACCCGCAAAAAGAGATAGCAATT 59.236 39.130 0.00 0.00 0.00 2.32
287 288 3.356290 ACCCGCAAAAAGAGATAGCAAT 58.644 40.909 0.00 0.00 0.00 3.56
288 289 2.747446 GACCCGCAAAAAGAGATAGCAA 59.253 45.455 0.00 0.00 0.00 3.91
289 290 2.290008 TGACCCGCAAAAAGAGATAGCA 60.290 45.455 0.00 0.00 0.00 3.49
290 291 2.352960 CTGACCCGCAAAAAGAGATAGC 59.647 50.000 0.00 0.00 0.00 2.97
291 292 3.861840 TCTGACCCGCAAAAAGAGATAG 58.138 45.455 0.00 0.00 0.00 2.08
292 293 3.973206 TCTGACCCGCAAAAAGAGATA 57.027 42.857 0.00 0.00 0.00 1.98
293 294 2.859165 TCTGACCCGCAAAAAGAGAT 57.141 45.000 0.00 0.00 0.00 2.75
294 295 2.859165 ATCTGACCCGCAAAAAGAGA 57.141 45.000 0.00 0.00 0.00 3.10
295 296 3.503748 AGAAATCTGACCCGCAAAAAGAG 59.496 43.478 0.00 0.00 0.00 2.85
296 297 3.486383 AGAAATCTGACCCGCAAAAAGA 58.514 40.909 0.00 0.00 0.00 2.52
297 298 3.923017 AGAAATCTGACCCGCAAAAAG 57.077 42.857 0.00 0.00 0.00 2.27
298 299 3.190535 GCTAGAAATCTGACCCGCAAAAA 59.809 43.478 0.00 0.00 0.00 1.94
299 300 2.747446 GCTAGAAATCTGACCCGCAAAA 59.253 45.455 0.00 0.00 0.00 2.44
300 301 2.027192 AGCTAGAAATCTGACCCGCAAA 60.027 45.455 0.00 0.00 0.00 3.68
301 302 1.555075 AGCTAGAAATCTGACCCGCAA 59.445 47.619 0.00 0.00 0.00 4.85
302 303 1.134699 CAGCTAGAAATCTGACCCGCA 60.135 52.381 0.00 0.00 32.26 5.69
303 304 1.576356 CAGCTAGAAATCTGACCCGC 58.424 55.000 0.00 0.00 32.26 6.13
304 305 1.137872 AGCAGCTAGAAATCTGACCCG 59.862 52.381 0.00 0.00 32.26 5.28
305 306 2.559440 CAGCAGCTAGAAATCTGACCC 58.441 52.381 0.00 0.00 32.26 4.46
306 307 2.093235 ACCAGCAGCTAGAAATCTGACC 60.093 50.000 0.00 0.00 32.26 4.02
307 308 3.258971 ACCAGCAGCTAGAAATCTGAC 57.741 47.619 0.00 0.00 32.26 3.51
308 309 5.453903 GGATTACCAGCAGCTAGAAATCTGA 60.454 44.000 16.53 0.00 35.97 3.27
309 310 4.754114 GGATTACCAGCAGCTAGAAATCTG 59.246 45.833 16.53 0.00 35.97 2.90
310 311 4.202409 GGGATTACCAGCAGCTAGAAATCT 60.202 45.833 16.53 0.00 39.85 2.40
311 312 4.068599 GGGATTACCAGCAGCTAGAAATC 58.931 47.826 0.00 4.52 39.85 2.17
312 313 3.718956 AGGGATTACCAGCAGCTAGAAAT 59.281 43.478 0.00 0.00 43.89 2.17
313 314 3.115390 AGGGATTACCAGCAGCTAGAAA 58.885 45.455 0.00 0.00 43.89 2.52
314 315 2.764269 AGGGATTACCAGCAGCTAGAA 58.236 47.619 0.00 0.00 43.89 2.10
315 316 2.478872 AGGGATTACCAGCAGCTAGA 57.521 50.000 0.00 0.00 43.89 2.43
316 317 2.703007 AGAAGGGATTACCAGCAGCTAG 59.297 50.000 0.00 0.00 43.89 3.42
317 318 2.700897 GAGAAGGGATTACCAGCAGCTA 59.299 50.000 0.00 0.00 43.89 3.32
318 319 1.488393 GAGAAGGGATTACCAGCAGCT 59.512 52.381 0.00 0.00 43.89 4.24
319 320 1.488393 AGAGAAGGGATTACCAGCAGC 59.512 52.381 0.00 0.00 43.89 5.25
320 321 3.922171 AAGAGAAGGGATTACCAGCAG 57.078 47.619 0.00 0.00 43.89 4.24
321 322 4.657814 AAAAGAGAAGGGATTACCAGCA 57.342 40.909 0.00 0.00 43.89 4.41
322 323 6.603599 ACAATAAAAGAGAAGGGATTACCAGC 59.396 38.462 0.00 0.00 43.89 4.85
323 324 9.853177 ATACAATAAAAGAGAAGGGATTACCAG 57.147 33.333 0.00 0.00 43.89 4.00
324 325 9.847224 GATACAATAAAAGAGAAGGGATTACCA 57.153 33.333 0.00 0.00 43.89 3.25
328 329 8.907885 GCAAGATACAATAAAAGAGAAGGGATT 58.092 33.333 0.00 0.00 0.00 3.01
329 330 8.055181 TGCAAGATACAATAAAAGAGAAGGGAT 58.945 33.333 0.00 0.00 0.00 3.85
330 331 7.402054 TGCAAGATACAATAAAAGAGAAGGGA 58.598 34.615 0.00 0.00 0.00 4.20
331 332 7.630242 TGCAAGATACAATAAAAGAGAAGGG 57.370 36.000 0.00 0.00 0.00 3.95
344 345 9.725019 TCTTCTCTCTTAAAATGCAAGATACAA 57.275 29.630 0.00 0.00 31.82 2.41
345 346 9.376075 CTCTTCTCTCTTAAAATGCAAGATACA 57.624 33.333 0.00 0.00 31.82 2.29
346 347 9.593134 TCTCTTCTCTCTTAAAATGCAAGATAC 57.407 33.333 0.00 0.00 31.82 2.24
347 348 9.593134 GTCTCTTCTCTCTTAAAATGCAAGATA 57.407 33.333 0.00 0.00 31.82 1.98
348 349 8.099537 TGTCTCTTCTCTCTTAAAATGCAAGAT 58.900 33.333 0.00 0.00 31.82 2.40
349 350 7.445121 TGTCTCTTCTCTCTTAAAATGCAAGA 58.555 34.615 0.00 0.00 0.00 3.02
350 351 7.664082 TGTCTCTTCTCTCTTAAAATGCAAG 57.336 36.000 0.00 0.00 0.00 4.01
351 352 8.627208 AATGTCTCTTCTCTCTTAAAATGCAA 57.373 30.769 0.00 0.00 0.00 4.08
352 353 9.376075 CTAATGTCTCTTCTCTCTTAAAATGCA 57.624 33.333 0.00 0.00 0.00 3.96
353 354 9.593134 TCTAATGTCTCTTCTCTCTTAAAATGC 57.407 33.333 0.00 0.00 0.00 3.56
359 360 9.634021 TGCTATTCTAATGTCTCTTCTCTCTTA 57.366 33.333 0.00 0.00 0.00 2.10
360 361 8.413229 GTGCTATTCTAATGTCTCTTCTCTCTT 58.587 37.037 0.00 0.00 0.00 2.85
361 362 7.014230 GGTGCTATTCTAATGTCTCTTCTCTCT 59.986 40.741 0.00 0.00 0.00 3.10
362 363 7.145323 GGTGCTATTCTAATGTCTCTTCTCTC 58.855 42.308 0.00 0.00 0.00 3.20
363 364 6.609212 TGGTGCTATTCTAATGTCTCTTCTCT 59.391 38.462 0.00 0.00 0.00 3.10
364 365 6.810911 TGGTGCTATTCTAATGTCTCTTCTC 58.189 40.000 0.00 0.00 0.00 2.87
365 366 6.798427 TGGTGCTATTCTAATGTCTCTTCT 57.202 37.500 0.00 0.00 0.00 2.85
366 367 9.717942 ATTATGGTGCTATTCTAATGTCTCTTC 57.282 33.333 0.00 0.00 0.00 2.87
447 448 5.878116 TGTTCGACCTCTTCTTCTTCAAAAA 59.122 36.000 0.00 0.00 0.00 1.94
448 449 5.293569 GTGTTCGACCTCTTCTTCTTCAAAA 59.706 40.000 0.00 0.00 0.00 2.44
449 450 4.809426 GTGTTCGACCTCTTCTTCTTCAAA 59.191 41.667 0.00 0.00 0.00 2.69
451 452 3.243771 GGTGTTCGACCTCTTCTTCTTCA 60.244 47.826 0.00 0.00 42.25 3.02
452 453 3.318886 GGTGTTCGACCTCTTCTTCTTC 58.681 50.000 0.00 0.00 42.25 2.87
454 455 1.619332 GGGTGTTCGACCTCTTCTTCT 59.381 52.381 0.00 0.00 45.33 2.85
491 499 0.250295 TCAGGACCAACAAAGGAGCG 60.250 55.000 0.00 0.00 0.00 5.03
504 512 1.973812 GGCTTGCCCTGTTCAGGAC 60.974 63.158 19.12 9.18 0.00 3.85
514 522 4.120755 CAGGAGGAGGGCTTGCCC 62.121 72.222 22.29 22.29 0.00 5.36
533 545 0.603065 GGTTGGTTGCTTGGTCCATC 59.397 55.000 0.00 0.00 0.00 3.51
537 549 0.104120 GGTTGGTTGGTTGCTTGGTC 59.896 55.000 0.00 0.00 0.00 4.02
540 552 0.534412 TGTGGTTGGTTGGTTGCTTG 59.466 50.000 0.00 0.00 0.00 4.01
541 553 1.270907 TTGTGGTTGGTTGGTTGCTT 58.729 45.000 0.00 0.00 0.00 3.91
542 554 1.270907 TTTGTGGTTGGTTGGTTGCT 58.729 45.000 0.00 0.00 0.00 3.91
543 555 2.323968 ATTTGTGGTTGGTTGGTTGC 57.676 45.000 0.00 0.00 0.00 4.17
582 594 4.142600 GCTCCACAATTGCGTTTCTCTAAT 60.143 41.667 5.05 0.00 0.00 1.73
593 605 3.413522 GCTCAAGCTCCACAATTGC 57.586 52.632 5.05 0.00 38.21 3.56
644 656 1.906824 AAGGACGACCCGAGCTTCA 60.907 57.895 0.00 0.00 40.87 3.02
647 659 1.878656 CTTCAAGGACGACCCGAGCT 61.879 60.000 0.00 0.00 40.87 4.09
650 662 0.530744 CATCTTCAAGGACGACCCGA 59.469 55.000 0.00 0.00 40.87 5.14
651 663 0.460284 CCATCTTCAAGGACGACCCG 60.460 60.000 0.00 0.00 40.87 5.28
653 665 1.825474 TCTCCATCTTCAAGGACGACC 59.175 52.381 0.00 0.00 0.00 4.79
655 667 3.165875 ACTTCTCCATCTTCAAGGACGA 58.834 45.455 0.00 0.00 0.00 4.20
657 669 4.006319 CCAACTTCTCCATCTTCAAGGAC 58.994 47.826 0.00 0.00 0.00 3.85
658 670 3.009473 CCCAACTTCTCCATCTTCAAGGA 59.991 47.826 0.00 0.00 0.00 3.36
659 671 3.350833 CCCAACTTCTCCATCTTCAAGG 58.649 50.000 0.00 0.00 0.00 3.61
663 1195 2.797177 AGCCCAACTTCTCCATCTTC 57.203 50.000 0.00 0.00 0.00 2.87
674 1206 0.886490 CGAGCACAAGAAGCCCAACT 60.886 55.000 0.00 0.00 0.00 3.16
675 1207 1.166531 ACGAGCACAAGAAGCCCAAC 61.167 55.000 0.00 0.00 0.00 3.77
676 1208 1.148273 ACGAGCACAAGAAGCCCAA 59.852 52.632 0.00 0.00 0.00 4.12
693 1269 0.456995 GTGGAGTAGAGACGCTGCAC 60.457 60.000 0.00 0.00 44.29 4.57
698 1274 1.025647 ACGAGGTGGAGTAGAGACGC 61.026 60.000 0.00 0.00 0.00 5.19
701 1277 2.434428 GTGAACGAGGTGGAGTAGAGA 58.566 52.381 0.00 0.00 0.00 3.10
735 1311 1.668751 TGTCGACACAAGTTTGCCTTC 59.331 47.619 15.76 0.00 0.00 3.46
764 1340 1.273606 GCATCCATTCCGAGCTAGCTA 59.726 52.381 19.38 1.43 0.00 3.32
773 1352 2.124736 ACCCACGCATCCATTCCG 60.125 61.111 0.00 0.00 0.00 4.30
789 1368 4.660938 GACCACCCCACCCAGCAC 62.661 72.222 0.00 0.00 0.00 4.40
827 1406 9.956720 GATCTCCAAACATTTAATTCATCGAAT 57.043 29.630 0.00 0.00 33.25 3.34
895 2514 4.875713 GATTGGATGGCCGCCGGT 62.876 66.667 4.45 0.00 36.79 5.28
1009 3825 0.652592 CTTGCTAGTACATGCGGTGC 59.347 55.000 0.00 0.00 0.00 5.01
1199 4015 0.376152 TCGTAGAAGATGCCGTCGAC 59.624 55.000 5.18 5.18 0.00 4.20
1361 4177 4.296265 GGGGTTGACCACGTGATC 57.704 61.111 19.30 10.93 42.91 2.92
1483 4299 4.771356 TCGTAGTGCGGCGACAGC 62.771 66.667 12.98 3.67 41.72 4.40
1525 4341 2.033194 CCCCGTCGGAAGCTTGAAC 61.033 63.158 14.39 0.00 0.00 3.18
1566 4382 4.321718 GGACACCGATTCATCATCATCAT 58.678 43.478 0.00 0.00 0.00 2.45
1567 4383 3.732212 GGACACCGATTCATCATCATCA 58.268 45.455 0.00 0.00 0.00 3.07
1636 4452 0.537371 CCTTCCAGCAACCGGTCTTT 60.537 55.000 8.04 0.00 0.00 2.52
1718 4534 7.095607 GGCGTAGAGGAAAAATGATACAGTATG 60.096 40.741 0.00 0.00 46.00 2.39
1838 4656 8.536175 GGGGAAAATAAACTGAACATCCAATTA 58.464 33.333 0.00 0.00 0.00 1.40
2010 4860 0.584396 GAAATGTGTTGCGGTCGACA 59.416 50.000 18.91 0.00 34.31 4.35
2053 4903 0.179034 GCCCACTCCATCTGACCATC 60.179 60.000 0.00 0.00 0.00 3.51
2172 5022 2.655090 TGCCATTCTTCAACACCAGA 57.345 45.000 0.00 0.00 0.00 3.86
2189 5039 1.358046 GCAGGCCGAAGATTGATGC 59.642 57.895 0.00 0.00 0.00 3.91
2201 5051 0.171903 GTCATTGTCATGTGCAGGCC 59.828 55.000 0.00 0.00 0.00 5.19
2539 5389 2.795329 CTGGAACTACAGGGCATTTGT 58.205 47.619 0.00 0.00 34.84 2.83
2746 5596 9.203421 CCAAACAATGAAAAGTACCTAAATTCC 57.797 33.333 0.00 0.00 0.00 3.01
2761 5611 3.695060 ACGTGTGGTAACCAAACAATGAA 59.305 39.130 0.00 0.00 41.61 2.57
2812 5662 4.618965 ACGAGCGATAAAGATCCCTAAAC 58.381 43.478 0.00 0.00 0.00 2.01
2831 5681 6.053005 GTGGAGGATAAATTGGTCATAACGA 58.947 40.000 0.00 0.00 0.00 3.85
2843 5693 5.659440 AAAATTGCACGTGGAGGATAAAT 57.341 34.783 18.88 0.13 0.00 1.40
2870 5720 9.719355 TTGTGCTCAAATATGTTTAGTTAGAGA 57.281 29.630 0.00 0.00 0.00 3.10
2871 5721 9.979270 CTTGTGCTCAAATATGTTTAGTTAGAG 57.021 33.333 2.44 0.00 32.87 2.43
2872 5722 9.719355 TCTTGTGCTCAAATATGTTTAGTTAGA 57.281 29.630 2.44 0.00 32.87 2.10
2876 5726 9.630098 CATTTCTTGTGCTCAAATATGTTTAGT 57.370 29.630 2.44 0.00 32.87 2.24
2877 5727 8.589629 GCATTTCTTGTGCTCAAATATGTTTAG 58.410 33.333 2.44 0.00 39.45 1.85
2878 5728 8.464770 GCATTTCTTGTGCTCAAATATGTTTA 57.535 30.769 2.44 0.00 39.45 2.01
2879 5729 7.355332 GCATTTCTTGTGCTCAAATATGTTT 57.645 32.000 2.44 0.00 39.45 2.83
2880 5730 6.956299 GCATTTCTTGTGCTCAAATATGTT 57.044 33.333 2.44 0.00 39.45 2.71
3018 5868 5.923733 TTGTTTCTTGGAAGCCTTGTTAA 57.076 34.783 0.00 0.00 0.00 2.01
3044 5894 7.361438 TCCATTAGAATTCCCCACATGTATTT 58.639 34.615 0.00 0.00 0.00 1.40
3131 5981 3.614870 GCATTGTGGCGATTCTCCTTTTT 60.615 43.478 0.00 0.00 0.00 1.94
3274 6124 4.339247 GGAGCAATGGAGCTAAGCAAAATA 59.661 41.667 0.00 0.00 46.75 1.40
3356 6206 8.567948 TCAACTACATCTTCAATGAACCTTTTC 58.432 33.333 0.00 0.00 0.00 2.29
3390 6240 9.970553 TTTTCTATCAAGTCTACTACTCCACTA 57.029 33.333 0.00 0.00 37.50 2.74
3429 6279 6.071616 GCAACCAAAAAGATCCCATTAGTACA 60.072 38.462 0.00 0.00 0.00 2.90
3454 6304 3.795041 CCAGGGAGAGCTGCTGGG 61.795 72.222 7.01 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.