Multiple sequence alignment - TraesCS5D01G398200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G398200 chr5D 100.000 3401 0 0 1 3401 464456540 464459940 0.000000e+00 6281
1 TraesCS5D01G398200 chr5D 92.143 140 10 1 1045 1183 464450211 464450350 2.680000e-46 196
2 TraesCS5D01G398200 chr5B 92.787 2357 112 29 327 2668 571534904 571537217 0.000000e+00 3358
3 TraesCS5D01G398200 chr5B 80.669 538 98 4 1319 1854 682538447 682537914 2.440000e-111 412
4 TraesCS5D01G398200 chr5B 87.987 308 31 5 3098 3401 571537765 571538070 3.230000e-95 359
5 TraesCS5D01G398200 chr5B 86.325 117 16 0 2661 2777 571537263 571537379 9.910000e-26 128
6 TraesCS5D01G398200 chr5A 92.876 2330 112 26 364 2670 584905960 584908258 0.000000e+00 3334
7 TraesCS5D01G398200 chr5A 84.169 638 86 10 2774 3401 584908794 584909426 3.750000e-169 604
8 TraesCS5D01G398200 chr3A 78.131 1006 181 31 1329 2325 631728857 631727882 1.350000e-168 603
9 TraesCS5D01G398200 chr3A 81.871 695 117 9 1329 2020 631776197 631776885 8.180000e-161 577
10 TraesCS5D01G398200 chr3A 84.348 230 34 2 1012 1240 599386113 599385885 1.230000e-54 224
11 TraesCS5D01G398200 chr3D 81.259 731 128 9 1329 2056 488118874 488118150 1.760000e-162 582
12 TraesCS5D01G398200 chr3D 80.842 736 131 10 1329 2061 488235088 488235816 1.370000e-158 569
13 TraesCS5D01G398200 chr3B 81.267 726 127 9 1334 2056 650954085 650953366 2.280000e-161 579
14 TraesCS5D01G398200 chr3B 80.848 731 131 9 1329 2056 651257483 651258207 1.770000e-157 566


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G398200 chr5D 464456540 464459940 3400 False 6281.000000 6281 100.0000 1 3401 1 chr5D.!!$F2 3400
1 TraesCS5D01G398200 chr5B 571534904 571538070 3166 False 1281.666667 3358 89.0330 327 3401 3 chr5B.!!$F1 3074
2 TraesCS5D01G398200 chr5B 682537914 682538447 533 True 412.000000 412 80.6690 1319 1854 1 chr5B.!!$R1 535
3 TraesCS5D01G398200 chr5A 584905960 584909426 3466 False 1969.000000 3334 88.5225 364 3401 2 chr5A.!!$F1 3037
4 TraesCS5D01G398200 chr3A 631727882 631728857 975 True 603.000000 603 78.1310 1329 2325 1 chr3A.!!$R2 996
5 TraesCS5D01G398200 chr3A 631776197 631776885 688 False 577.000000 577 81.8710 1329 2020 1 chr3A.!!$F1 691
6 TraesCS5D01G398200 chr3D 488118150 488118874 724 True 582.000000 582 81.2590 1329 2056 1 chr3D.!!$R1 727
7 TraesCS5D01G398200 chr3D 488235088 488235816 728 False 569.000000 569 80.8420 1329 2061 1 chr3D.!!$F1 732
8 TraesCS5D01G398200 chr3B 650953366 650954085 719 True 579.000000 579 81.2670 1334 2056 1 chr3B.!!$R1 722
9 TraesCS5D01G398200 chr3B 651257483 651258207 724 False 566.000000 566 80.8480 1329 2056 1 chr3B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 444 0.036952 CGATTAGCCGGCTGATCCAT 60.037 55.0 40.04 24.61 36.19 3.41 F
688 699 0.318445 ACGCTAATTACGCTAGGCCG 60.318 55.0 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1405 0.107214 TCCATGCCCGGAAGTTCATC 60.107 55.0 0.73 0.0 29.93 2.92 R
2482 2508 0.762418 TGGACATTCGTTGGTGGACT 59.238 50.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.675063 ATCCCAGGACCAAAATTGTAGT 57.325 40.909 0.00 0.00 0.00 2.73
23 24 3.761897 TCCCAGGACCAAAATTGTAGTG 58.238 45.455 0.00 0.00 0.00 2.74
24 25 2.231235 CCCAGGACCAAAATTGTAGTGC 59.769 50.000 0.00 0.00 0.00 4.40
25 26 2.890311 CCAGGACCAAAATTGTAGTGCA 59.110 45.455 0.00 0.00 0.00 4.57
26 27 3.057315 CCAGGACCAAAATTGTAGTGCAG 60.057 47.826 0.00 0.00 0.00 4.41
27 28 2.558359 AGGACCAAAATTGTAGTGCAGC 59.442 45.455 0.00 0.00 0.00 5.25
28 29 2.558359 GGACCAAAATTGTAGTGCAGCT 59.442 45.455 0.00 0.00 0.00 4.24
29 30 3.005791 GGACCAAAATTGTAGTGCAGCTT 59.994 43.478 0.00 0.00 0.00 3.74
30 31 3.981211 ACCAAAATTGTAGTGCAGCTTG 58.019 40.909 0.00 0.00 0.00 4.01
31 32 2.733026 CCAAAATTGTAGTGCAGCTTGC 59.267 45.455 0.00 1.70 45.29 4.01
40 41 4.800355 GCAGCTTGCATTGGTAGC 57.200 55.556 0.00 0.00 44.26 3.58
41 42 2.187073 GCAGCTTGCATTGGTAGCT 58.813 52.632 3.98 3.98 45.64 3.32
42 43 0.529378 GCAGCTTGCATTGGTAGCTT 59.471 50.000 7.11 0.00 42.30 3.74
43 44 1.734707 GCAGCTTGCATTGGTAGCTTG 60.735 52.381 7.11 5.11 42.30 4.01
44 45 1.814394 CAGCTTGCATTGGTAGCTTGA 59.186 47.619 7.11 0.00 42.30 3.02
45 46 2.089980 AGCTTGCATTGGTAGCTTGAG 58.910 47.619 3.98 0.00 42.30 3.02
46 47 1.468736 GCTTGCATTGGTAGCTTGAGC 60.469 52.381 0.00 0.00 42.49 4.26
47 48 1.814394 CTTGCATTGGTAGCTTGAGCA 59.186 47.619 5.70 0.00 45.16 4.26
48 49 1.456296 TGCATTGGTAGCTTGAGCAG 58.544 50.000 5.70 0.00 45.16 4.24
66 67 4.047834 CACGCTTGCAGTTCCAGA 57.952 55.556 0.00 0.00 0.00 3.86
67 68 1.864862 CACGCTTGCAGTTCCAGAG 59.135 57.895 0.00 0.00 0.00 3.35
68 69 1.963338 ACGCTTGCAGTTCCAGAGC 60.963 57.895 0.00 0.00 0.00 4.09
69 70 1.962822 CGCTTGCAGTTCCAGAGCA 60.963 57.895 5.25 0.00 36.32 4.26
70 71 1.303799 CGCTTGCAGTTCCAGAGCAT 61.304 55.000 5.25 0.00 38.19 3.79
71 72 1.742761 GCTTGCAGTTCCAGAGCATA 58.257 50.000 0.00 0.00 38.19 3.14
72 73 1.399791 GCTTGCAGTTCCAGAGCATAC 59.600 52.381 0.00 0.00 38.19 2.39
73 74 2.703416 CTTGCAGTTCCAGAGCATACA 58.297 47.619 0.00 0.00 38.19 2.29
74 75 2.391616 TGCAGTTCCAGAGCATACAG 57.608 50.000 0.00 0.00 32.55 2.74
75 76 1.901833 TGCAGTTCCAGAGCATACAGA 59.098 47.619 0.00 0.00 32.55 3.41
76 77 2.502947 TGCAGTTCCAGAGCATACAGAT 59.497 45.455 0.00 0.00 32.55 2.90
77 78 3.706086 TGCAGTTCCAGAGCATACAGATA 59.294 43.478 0.00 0.00 32.55 1.98
78 79 4.054671 GCAGTTCCAGAGCATACAGATAC 58.945 47.826 0.00 0.00 0.00 2.24
79 80 4.442052 GCAGTTCCAGAGCATACAGATACA 60.442 45.833 0.00 0.00 0.00 2.29
80 81 5.288015 CAGTTCCAGAGCATACAGATACAG 58.712 45.833 0.00 0.00 0.00 2.74
81 82 4.959210 AGTTCCAGAGCATACAGATACAGT 59.041 41.667 0.00 0.00 0.00 3.55
82 83 4.926140 TCCAGAGCATACAGATACAGTG 57.074 45.455 0.00 0.00 0.00 3.66
83 84 4.281657 TCCAGAGCATACAGATACAGTGT 58.718 43.478 0.00 0.00 0.00 3.55
84 85 4.098501 TCCAGAGCATACAGATACAGTGTG 59.901 45.833 5.88 0.00 0.00 3.82
92 93 7.170240 CATACAGATACAGTGTGCACTTATG 57.830 40.000 19.41 15.54 40.20 1.90
93 94 5.152623 ACAGATACAGTGTGCACTTATGT 57.847 39.130 19.41 20.08 40.20 2.29
94 95 4.931601 ACAGATACAGTGTGCACTTATGTG 59.068 41.667 23.50 19.82 46.37 3.21
95 96 4.931601 CAGATACAGTGTGCACTTATGTGT 59.068 41.667 23.50 19.38 45.44 3.72
96 97 5.409520 CAGATACAGTGTGCACTTATGTGTT 59.590 40.000 23.50 14.90 45.44 3.32
97 98 3.969117 ACAGTGTGCACTTATGTGTTG 57.031 42.857 19.41 7.08 45.44 3.33
98 99 3.278574 ACAGTGTGCACTTATGTGTTGT 58.721 40.909 19.41 7.67 45.44 3.32
99 100 3.312421 ACAGTGTGCACTTATGTGTTGTC 59.688 43.478 19.41 0.91 45.44 3.18
100 101 3.312146 CAGTGTGCACTTATGTGTTGTCA 59.688 43.478 19.41 0.00 45.44 3.58
101 102 3.944650 AGTGTGCACTTATGTGTTGTCAA 59.055 39.130 19.41 0.00 45.44 3.18
102 103 4.397730 AGTGTGCACTTATGTGTTGTCAAA 59.602 37.500 19.41 0.00 45.44 2.69
103 104 4.499040 GTGTGCACTTATGTGTTGTCAAAC 59.501 41.667 19.41 0.00 45.44 2.93
104 105 4.156739 TGTGCACTTATGTGTTGTCAAACA 59.843 37.500 19.41 0.00 45.44 2.83
105 106 9.234361 AGTGTGCACTTATGTGTTGTCAAACAT 62.234 37.037 19.41 13.98 42.74 2.71
114 115 7.744087 ATGTGTTGTCAAACATAGTACACAT 57.256 32.000 16.65 16.65 44.71 3.21
115 116 8.840833 ATGTGTTGTCAAACATAGTACACATA 57.159 30.769 19.16 3.88 46.46 2.29
116 117 9.278978 ATGTGTTGTCAAACATAGTACACATAA 57.721 29.630 19.16 2.09 46.46 1.90
119 120 9.719355 TGTTGTCAAACATAGTACACATAAGAT 57.281 29.630 0.00 0.00 41.41 2.40
120 121 9.973246 GTTGTCAAACATAGTACACATAAGATG 57.027 33.333 0.00 0.00 36.24 2.90
121 122 8.716646 TGTCAAACATAGTACACATAAGATGG 57.283 34.615 0.00 0.00 33.60 3.51
122 123 8.536175 TGTCAAACATAGTACACATAAGATGGA 58.464 33.333 0.00 0.00 33.60 3.41
123 124 9.547753 GTCAAACATAGTACACATAAGATGGAT 57.452 33.333 0.00 0.00 33.60 3.41
124 125 9.764363 TCAAACATAGTACACATAAGATGGATC 57.236 33.333 0.00 0.00 33.60 3.36
125 126 9.546428 CAAACATAGTACACATAAGATGGATCA 57.454 33.333 0.00 0.00 33.60 2.92
153 154 9.851686 TTGATCTCAATTATTAATACCTGCTGT 57.148 29.630 0.00 0.00 0.00 4.40
159 160 8.836413 TCAATTATTAATACCTGCTGTAGTTGC 58.164 33.333 0.00 0.00 31.61 4.17
160 161 8.840321 CAATTATTAATACCTGCTGTAGTTGCT 58.160 33.333 0.00 0.00 31.61 3.91
161 162 8.980481 ATTATTAATACCTGCTGTAGTTGCTT 57.020 30.769 0.00 0.00 31.61 3.91
162 163 6.683974 ATTAATACCTGCTGTAGTTGCTTG 57.316 37.500 0.00 0.00 31.61 4.01
163 164 2.472695 TACCTGCTGTAGTTGCTTGG 57.527 50.000 0.00 0.00 0.00 3.61
164 165 0.890996 ACCTGCTGTAGTTGCTTGGC 60.891 55.000 0.00 0.00 0.00 4.52
165 166 1.589716 CCTGCTGTAGTTGCTTGGCC 61.590 60.000 0.00 0.00 0.00 5.36
166 167 0.890542 CTGCTGTAGTTGCTTGGCCA 60.891 55.000 0.00 0.00 0.00 5.36
167 168 0.890542 TGCTGTAGTTGCTTGGCCAG 60.891 55.000 5.11 1.08 0.00 4.85
168 169 0.606401 GCTGTAGTTGCTTGGCCAGA 60.606 55.000 5.11 0.00 0.00 3.86
169 170 1.896220 CTGTAGTTGCTTGGCCAGAA 58.104 50.000 5.11 0.00 0.00 3.02
170 171 2.229792 CTGTAGTTGCTTGGCCAGAAA 58.770 47.619 5.11 0.00 0.00 2.52
171 172 2.622942 CTGTAGTTGCTTGGCCAGAAAA 59.377 45.455 5.11 0.00 0.00 2.29
172 173 2.622942 TGTAGTTGCTTGGCCAGAAAAG 59.377 45.455 5.11 0.61 0.00 2.27
173 174 1.043022 AGTTGCTTGGCCAGAAAAGG 58.957 50.000 5.11 0.00 0.00 3.11
182 183 1.593265 CCAGAAAAGGCACATGGGC 59.407 57.895 12.85 12.85 43.80 5.36
183 184 1.186917 CCAGAAAAGGCACATGGGCA 61.187 55.000 23.88 0.00 46.44 5.36
184 185 0.037975 CAGAAAAGGCACATGGGCAC 60.038 55.000 23.88 11.41 46.44 5.01
185 186 0.178953 AGAAAAGGCACATGGGCACT 60.179 50.000 23.88 13.73 46.44 4.40
186 187 0.681175 GAAAAGGCACATGGGCACTT 59.319 50.000 23.88 18.93 46.44 3.16
187 188 0.681175 AAAAGGCACATGGGCACTTC 59.319 50.000 23.88 3.70 46.44 3.01
188 189 0.178953 AAAGGCACATGGGCACTTCT 60.179 50.000 23.88 6.43 46.44 2.85
189 190 0.178953 AAGGCACATGGGCACTTCTT 60.179 50.000 23.88 12.83 46.44 2.52
190 191 0.178953 AGGCACATGGGCACTTCTTT 60.179 50.000 23.88 0.00 46.44 2.52
191 192 0.037975 GGCACATGGGCACTTCTTTG 60.038 55.000 23.88 0.00 42.77 2.77
192 193 0.961019 GCACATGGGCACTTCTTTGA 59.039 50.000 16.99 0.00 0.00 2.69
193 194 1.336240 GCACATGGGCACTTCTTTGAC 60.336 52.381 16.99 0.00 0.00 3.18
194 195 1.955778 CACATGGGCACTTCTTTGACA 59.044 47.619 0.00 0.00 0.00 3.58
195 196 2.361757 CACATGGGCACTTCTTTGACAA 59.638 45.455 0.00 0.00 0.00 3.18
196 197 2.624838 ACATGGGCACTTCTTTGACAAG 59.375 45.455 0.00 0.00 0.00 3.16
197 198 2.727123 TGGGCACTTCTTTGACAAGA 57.273 45.000 0.00 0.00 37.24 3.02
198 199 3.228188 TGGGCACTTCTTTGACAAGAT 57.772 42.857 0.00 0.00 38.89 2.40
199 200 3.565307 TGGGCACTTCTTTGACAAGATT 58.435 40.909 0.00 0.00 38.89 2.40
200 201 3.318839 TGGGCACTTCTTTGACAAGATTG 59.681 43.478 0.00 0.00 38.89 2.67
201 202 3.569701 GGGCACTTCTTTGACAAGATTGA 59.430 43.478 0.00 0.00 38.89 2.57
202 203 4.540824 GGCACTTCTTTGACAAGATTGAC 58.459 43.478 0.00 0.00 38.89 3.18
203 204 4.036734 GGCACTTCTTTGACAAGATTGACA 59.963 41.667 0.00 0.00 38.89 3.58
204 205 4.972440 GCACTTCTTTGACAAGATTGACAC 59.028 41.667 0.00 0.00 38.89 3.67
205 206 5.449041 GCACTTCTTTGACAAGATTGACACA 60.449 40.000 0.00 0.00 38.89 3.72
206 207 6.554419 CACTTCTTTGACAAGATTGACACAA 58.446 36.000 0.00 0.00 38.89 3.33
207 208 7.028962 CACTTCTTTGACAAGATTGACACAAA 58.971 34.615 0.00 7.93 38.89 2.83
208 209 7.703621 CACTTCTTTGACAAGATTGACACAAAT 59.296 33.333 0.00 0.00 38.89 2.32
209 210 8.253113 ACTTCTTTGACAAGATTGACACAAATT 58.747 29.630 0.00 0.00 38.89 1.82
210 211 9.734620 CTTCTTTGACAAGATTGACACAAATTA 57.265 29.630 0.00 0.11 38.89 1.40
211 212 9.515020 TTCTTTGACAAGATTGACACAAATTAC 57.485 29.630 0.00 0.00 38.89 1.89
212 213 8.681806 TCTTTGACAAGATTGACACAAATTACA 58.318 29.630 0.00 0.00 33.80 2.41
213 214 8.627487 TTTGACAAGATTGACACAAATTACAC 57.373 30.769 0.00 0.00 32.94 2.90
214 215 6.426327 TGACAAGATTGACACAAATTACACG 58.574 36.000 0.00 0.00 0.00 4.49
215 216 6.258947 TGACAAGATTGACACAAATTACACGA 59.741 34.615 0.00 0.00 0.00 4.35
216 217 7.022055 ACAAGATTGACACAAATTACACGAA 57.978 32.000 0.00 0.00 0.00 3.85
217 218 7.476667 ACAAGATTGACACAAATTACACGAAA 58.523 30.769 0.00 0.00 0.00 3.46
218 219 8.134895 ACAAGATTGACACAAATTACACGAAAT 58.865 29.630 0.00 0.00 0.00 2.17
219 220 8.967218 CAAGATTGACACAAATTACACGAAATT 58.033 29.630 0.00 0.00 0.00 1.82
220 221 8.506140 AGATTGACACAAATTACACGAAATTG 57.494 30.769 0.00 0.00 0.00 2.32
221 222 7.594758 AGATTGACACAAATTACACGAAATTGG 59.405 33.333 0.00 0.00 0.00 3.16
222 223 6.137794 TGACACAAATTACACGAAATTGGT 57.862 33.333 0.00 0.00 34.04 3.67
223 224 7.260558 TGACACAAATTACACGAAATTGGTA 57.739 32.000 0.00 0.00 32.38 3.25
224 225 7.356540 TGACACAAATTACACGAAATTGGTAG 58.643 34.615 0.00 0.00 32.38 3.18
225 226 6.674066 ACACAAATTACACGAAATTGGTAGG 58.326 36.000 0.00 0.00 32.38 3.18
226 227 6.487331 ACACAAATTACACGAAATTGGTAGGA 59.513 34.615 0.00 0.00 32.38 2.94
227 228 7.021196 CACAAATTACACGAAATTGGTAGGAG 58.979 38.462 0.00 0.00 32.38 3.69
228 229 6.938030 ACAAATTACACGAAATTGGTAGGAGA 59.062 34.615 0.00 0.00 32.38 3.71
229 230 7.119262 ACAAATTACACGAAATTGGTAGGAGAG 59.881 37.037 0.00 0.00 32.38 3.20
230 231 5.733620 TTACACGAAATTGGTAGGAGAGT 57.266 39.130 0.00 0.00 0.00 3.24
231 232 6.839124 TTACACGAAATTGGTAGGAGAGTA 57.161 37.500 0.00 0.00 0.00 2.59
232 233 5.733620 ACACGAAATTGGTAGGAGAGTAA 57.266 39.130 0.00 0.00 0.00 2.24
233 234 6.105397 ACACGAAATTGGTAGGAGAGTAAA 57.895 37.500 0.00 0.00 0.00 2.01
234 235 6.164176 ACACGAAATTGGTAGGAGAGTAAAG 58.836 40.000 0.00 0.00 0.00 1.85
235 236 5.581085 CACGAAATTGGTAGGAGAGTAAAGG 59.419 44.000 0.00 0.00 0.00 3.11
236 237 5.247792 ACGAAATTGGTAGGAGAGTAAAGGT 59.752 40.000 0.00 0.00 0.00 3.50
237 238 5.581085 CGAAATTGGTAGGAGAGTAAAGGTG 59.419 44.000 0.00 0.00 0.00 4.00
238 239 3.975168 TTGGTAGGAGAGTAAAGGTGC 57.025 47.619 0.00 0.00 0.00 5.01
239 240 3.185880 TGGTAGGAGAGTAAAGGTGCT 57.814 47.619 0.00 0.00 0.00 4.40
240 241 2.832129 TGGTAGGAGAGTAAAGGTGCTG 59.168 50.000 0.00 0.00 0.00 4.41
241 242 2.832733 GGTAGGAGAGTAAAGGTGCTGT 59.167 50.000 0.00 0.00 0.00 4.40
242 243 3.261137 GGTAGGAGAGTAAAGGTGCTGTT 59.739 47.826 0.00 0.00 0.00 3.16
243 244 4.262938 GGTAGGAGAGTAAAGGTGCTGTTT 60.263 45.833 0.00 0.00 0.00 2.83
244 245 4.439253 AGGAGAGTAAAGGTGCTGTTTT 57.561 40.909 0.00 0.00 0.00 2.43
245 246 4.793201 AGGAGAGTAAAGGTGCTGTTTTT 58.207 39.130 0.00 0.00 0.00 1.94
246 247 4.580580 AGGAGAGTAAAGGTGCTGTTTTTG 59.419 41.667 0.00 0.00 0.00 2.44
247 248 4.338400 GGAGAGTAAAGGTGCTGTTTTTGT 59.662 41.667 0.00 0.00 0.00 2.83
248 249 5.500645 AGAGTAAAGGTGCTGTTTTTGTC 57.499 39.130 0.00 0.00 0.00 3.18
249 250 4.035208 AGAGTAAAGGTGCTGTTTTTGTCG 59.965 41.667 0.00 0.00 0.00 4.35
250 251 3.692593 AGTAAAGGTGCTGTTTTTGTCGT 59.307 39.130 0.00 0.00 0.00 4.34
251 252 2.844122 AAGGTGCTGTTTTTGTCGTC 57.156 45.000 0.00 0.00 0.00 4.20
252 253 1.745232 AGGTGCTGTTTTTGTCGTCA 58.255 45.000 0.00 0.00 0.00 4.35
253 254 2.297701 AGGTGCTGTTTTTGTCGTCAT 58.702 42.857 0.00 0.00 0.00 3.06
254 255 2.033299 AGGTGCTGTTTTTGTCGTCATG 59.967 45.455 0.00 0.00 0.00 3.07
255 256 2.032799 GGTGCTGTTTTTGTCGTCATGA 59.967 45.455 0.00 0.00 0.00 3.07
256 257 3.488384 GGTGCTGTTTTTGTCGTCATGAA 60.488 43.478 0.00 0.00 0.00 2.57
257 258 4.101942 GTGCTGTTTTTGTCGTCATGAAA 58.898 39.130 0.00 0.00 0.00 2.69
258 259 4.560819 GTGCTGTTTTTGTCGTCATGAAAA 59.439 37.500 0.00 0.00 0.00 2.29
259 260 4.797868 TGCTGTTTTTGTCGTCATGAAAAG 59.202 37.500 0.00 0.00 0.00 2.27
260 261 5.034152 GCTGTTTTTGTCGTCATGAAAAGA 58.966 37.500 0.00 0.00 0.00 2.52
261 262 5.052370 GCTGTTTTTGTCGTCATGAAAAGAC 60.052 40.000 16.02 16.02 0.00 3.01
262 263 5.944013 TGTTTTTGTCGTCATGAAAAGACA 58.056 33.333 19.63 19.63 41.24 3.41
267 268 6.912203 TTGTCGTCATGAAAAGACAAGTAA 57.088 33.333 25.75 13.20 45.21 2.24
268 269 6.525121 TGTCGTCATGAAAAGACAAGTAAG 57.475 37.500 20.64 0.00 40.19 2.34
269 270 5.050363 TGTCGTCATGAAAAGACAAGTAAGC 60.050 40.000 20.64 0.00 40.19 3.09
270 271 5.050363 GTCGTCATGAAAAGACAAGTAAGCA 60.050 40.000 17.28 0.00 35.77 3.91
271 272 5.050363 TCGTCATGAAAAGACAAGTAAGCAC 60.050 40.000 0.00 0.00 35.77 4.40
272 273 5.452777 GTCATGAAAAGACAAGTAAGCACC 58.547 41.667 0.00 0.00 36.06 5.01
273 274 5.239525 GTCATGAAAAGACAAGTAAGCACCT 59.760 40.000 0.00 0.00 36.06 4.00
274 275 5.239306 TCATGAAAAGACAAGTAAGCACCTG 59.761 40.000 0.00 0.00 0.00 4.00
275 276 3.315191 TGAAAAGACAAGTAAGCACCTGC 59.685 43.478 0.00 0.00 42.49 4.85
306 307 5.461032 TTTTACCACAAGTTGCCCTATTG 57.539 39.130 1.81 0.00 0.00 1.90
307 308 2.675658 ACCACAAGTTGCCCTATTGT 57.324 45.000 1.81 0.00 37.64 2.71
308 309 2.957474 ACCACAAGTTGCCCTATTGTT 58.043 42.857 1.81 0.00 35.04 2.83
309 310 4.107127 ACCACAAGTTGCCCTATTGTTA 57.893 40.909 1.81 0.00 35.04 2.41
310 311 4.475345 ACCACAAGTTGCCCTATTGTTAA 58.525 39.130 1.81 0.00 35.04 2.01
311 312 5.083821 ACCACAAGTTGCCCTATTGTTAAT 58.916 37.500 1.81 0.00 35.04 1.40
312 313 5.542251 ACCACAAGTTGCCCTATTGTTAATT 59.458 36.000 1.81 0.00 35.04 1.40
313 314 6.042666 ACCACAAGTTGCCCTATTGTTAATTT 59.957 34.615 1.81 0.00 35.04 1.82
314 315 6.368516 CCACAAGTTGCCCTATTGTTAATTTG 59.631 38.462 1.81 0.00 35.04 2.32
315 316 5.931724 ACAAGTTGCCCTATTGTTAATTTGC 59.068 36.000 1.81 0.00 33.49 3.68
316 317 5.736951 AGTTGCCCTATTGTTAATTTGCA 57.263 34.783 0.00 0.00 0.00 4.08
317 318 5.723295 AGTTGCCCTATTGTTAATTTGCAG 58.277 37.500 0.00 0.00 0.00 4.41
318 319 5.245977 AGTTGCCCTATTGTTAATTTGCAGT 59.754 36.000 0.00 0.00 0.00 4.40
319 320 6.435904 AGTTGCCCTATTGTTAATTTGCAGTA 59.564 34.615 0.00 0.00 0.00 2.74
320 321 6.202516 TGCCCTATTGTTAATTTGCAGTAC 57.797 37.500 0.00 0.00 0.00 2.73
321 322 5.712446 TGCCCTATTGTTAATTTGCAGTACA 59.288 36.000 0.00 0.00 0.00 2.90
322 323 6.209589 TGCCCTATTGTTAATTTGCAGTACAA 59.790 34.615 0.00 0.00 36.13 2.41
323 324 7.093552 TGCCCTATTGTTAATTTGCAGTACAAT 60.094 33.333 14.18 14.18 41.06 2.71
324 325 8.410141 GCCCTATTGTTAATTTGCAGTACAATA 58.590 33.333 14.65 14.65 39.42 1.90
371 372 4.854173 TGAGCCTTTATGCTTATGTTGGA 58.146 39.130 0.00 0.00 42.95 3.53
415 416 4.394729 TGGTGTTTGACTAAATCCACCTC 58.605 43.478 7.98 0.00 40.72 3.85
440 441 4.268687 CCGATTAGCCGGCTGATC 57.731 61.111 38.34 38.34 43.25 2.92
441 442 1.374758 CCGATTAGCCGGCTGATCC 60.375 63.158 40.04 27.76 43.25 3.36
442 443 1.367471 CGATTAGCCGGCTGATCCA 59.633 57.895 40.04 21.78 36.19 3.41
443 444 0.036952 CGATTAGCCGGCTGATCCAT 60.037 55.000 40.04 24.61 36.19 3.41
444 445 1.446907 GATTAGCCGGCTGATCCATG 58.553 55.000 38.35 0.00 34.29 3.66
445 446 1.002430 GATTAGCCGGCTGATCCATGA 59.998 52.381 38.35 17.64 34.29 3.07
446 447 1.059098 TTAGCCGGCTGATCCATGAT 58.941 50.000 38.98 11.29 34.01 2.45
447 448 0.322648 TAGCCGGCTGATCCATGATG 59.677 55.000 38.98 0.00 34.01 3.07
448 449 2.623915 GCCGGCTGATCCATGATGC 61.624 63.158 22.15 0.00 34.01 3.91
449 450 1.228033 CCGGCTGATCCATGATGCA 60.228 57.895 0.00 0.00 34.01 3.96
450 451 1.512996 CCGGCTGATCCATGATGCAC 61.513 60.000 0.00 0.00 34.01 4.57
451 452 1.838568 CGGCTGATCCATGATGCACG 61.839 60.000 0.00 0.00 34.01 5.34
472 473 3.426695 CGCATGATTCCAAAACTGGAGAC 60.427 47.826 0.00 0.00 39.43 3.36
504 505 0.909610 TGAAGGACCGGGAATGCTCT 60.910 55.000 6.32 0.00 0.00 4.09
505 506 0.462759 GAAGGACCGGGAATGCTCTG 60.463 60.000 6.32 0.00 0.00 3.35
507 508 0.692419 AGGACCGGGAATGCTCTGAT 60.692 55.000 6.32 0.00 0.00 2.90
508 509 0.533755 GGACCGGGAATGCTCTGATG 60.534 60.000 6.32 0.00 0.00 3.07
509 510 1.153086 ACCGGGAATGCTCTGATGC 60.153 57.895 6.32 0.00 0.00 3.91
517 518 4.504514 GGGAATGCTCTGATGCTCATAAGA 60.505 45.833 0.00 0.00 0.00 2.10
534 535 5.652014 TCATAAGAAAGTCCGCCATTTGATT 59.348 36.000 0.00 0.00 0.00 2.57
536 537 5.975693 AAGAAAGTCCGCCATTTGATTTA 57.024 34.783 0.00 0.00 0.00 1.40
537 538 5.975693 AGAAAGTCCGCCATTTGATTTAA 57.024 34.783 0.00 0.00 0.00 1.52
538 539 6.530019 AGAAAGTCCGCCATTTGATTTAAT 57.470 33.333 0.00 0.00 0.00 1.40
540 541 6.813152 AGAAAGTCCGCCATTTGATTTAATTG 59.187 34.615 0.00 0.00 0.00 2.32
541 542 5.009854 AGTCCGCCATTTGATTTAATTGG 57.990 39.130 0.00 0.00 40.93 3.16
544 545 3.803778 CCGCCATTTGATTTAATTGGAGC 59.196 43.478 6.35 0.00 40.60 4.70
545 546 4.441913 CCGCCATTTGATTTAATTGGAGCT 60.442 41.667 6.35 0.00 40.60 4.09
546 547 5.111293 CGCCATTTGATTTAATTGGAGCTT 58.889 37.500 6.35 0.00 40.60 3.74
548 549 5.876460 GCCATTTGATTTAATTGGAGCTTGT 59.124 36.000 6.35 0.00 40.60 3.16
549 550 6.183360 GCCATTTGATTTAATTGGAGCTTGTG 60.183 38.462 6.35 0.00 40.60 3.33
555 556 2.299326 AATTGGAGCTTGTGCCTTCT 57.701 45.000 0.00 0.00 40.80 2.85
567 568 3.674997 TGTGCCTTCTGATTTGTACTCC 58.325 45.455 0.00 0.00 0.00 3.85
569 570 4.202461 TGTGCCTTCTGATTTGTACTCCTT 60.202 41.667 0.00 0.00 0.00 3.36
572 573 5.241506 TGCCTTCTGATTTGTACTCCTTTTG 59.758 40.000 0.00 0.00 0.00 2.44
586 587 9.616156 TGTACTCCTTTTGTTTATAACACAAGA 57.384 29.630 16.07 8.39 46.80 3.02
621 632 0.996462 TCGTTAGATTCTTTGCGCCG 59.004 50.000 4.18 0.00 0.00 6.46
681 692 0.853419 GGCTCAGACGCTAATTACGC 59.147 55.000 7.18 3.12 0.00 4.42
687 698 1.000496 AGACGCTAATTACGCTAGGCC 60.000 52.381 0.00 0.00 0.00 5.19
688 699 0.318445 ACGCTAATTACGCTAGGCCG 60.318 55.000 0.00 0.00 0.00 6.13
726 737 2.096218 GCAAAGTGCAGACGTAGAAAGG 60.096 50.000 0.00 0.00 44.26 3.11
745 757 4.368565 AGGAACTAACTCCCCAGAAAAC 57.631 45.455 0.00 0.00 36.02 2.43
928 940 2.949678 CGACGCCGGATCTTGTCG 60.950 66.667 5.05 12.30 46.57 4.35
953 965 2.772189 GCACACACTCGCATCGTC 59.228 61.111 0.00 0.00 0.00 4.20
991 1004 3.962421 CGGCCGGCGAGTAGGTAG 61.962 72.222 22.54 0.00 0.00 3.18
992 1005 2.517875 GGCCGGCGAGTAGGTAGA 60.518 66.667 22.54 0.00 0.00 2.59
993 1006 1.902432 GGCCGGCGAGTAGGTAGAT 60.902 63.158 22.54 0.00 0.00 1.98
994 1007 1.461911 GGCCGGCGAGTAGGTAGATT 61.462 60.000 22.54 0.00 0.00 2.40
995 1008 1.242076 GCCGGCGAGTAGGTAGATTA 58.758 55.000 12.58 0.00 0.00 1.75
1629 1642 1.308069 CGCCCAACAACATCCTCCTG 61.308 60.000 0.00 0.00 0.00 3.86
1632 1645 1.352352 CCCAACAACATCCTCCTGACT 59.648 52.381 0.00 0.00 0.00 3.41
1998 2011 4.082523 ATCCTCCACACGCACGGG 62.083 66.667 0.00 0.00 0.00 5.28
2370 2383 0.970427 ACCAAATGACGGCCAATCCC 60.970 55.000 2.24 0.00 0.00 3.85
2451 2465 5.643777 ACTAGTGCATTGTGGAGTATGTTTC 59.356 40.000 0.00 0.00 0.00 2.78
2508 2537 2.884639 ACCAACGAATGTCCAAGGAAAG 59.115 45.455 0.00 0.00 0.00 2.62
2521 2550 3.339141 CAAGGAAAGTAGGAACAGCCTC 58.661 50.000 0.00 0.00 46.97 4.70
2618 2648 4.582656 ACATATAGCTAGCGATCCTCATCC 59.417 45.833 14.04 0.00 0.00 3.51
2619 2649 1.840737 TAGCTAGCGATCCTCATCCC 58.159 55.000 9.55 0.00 0.00 3.85
2621 2651 1.188219 GCTAGCGATCCTCATCCCCA 61.188 60.000 0.00 0.00 0.00 4.96
2622 2652 1.342074 CTAGCGATCCTCATCCCCAA 58.658 55.000 0.00 0.00 0.00 4.12
2623 2653 1.274728 CTAGCGATCCTCATCCCCAAG 59.725 57.143 0.00 0.00 0.00 3.61
2670 2705 4.076394 TGTGTCTAGGGTAACAAATTGGC 58.924 43.478 0.00 0.00 39.74 4.52
2672 2707 4.076394 TGTCTAGGGTAACAAATTGGCAC 58.924 43.478 0.00 0.00 39.74 5.01
2673 2708 3.442625 GTCTAGGGTAACAAATTGGCACC 59.557 47.826 9.05 9.05 39.74 5.01
2676 2711 1.967779 GGGTAACAAATTGGCACCAGT 59.032 47.619 16.53 0.00 39.74 4.00
2683 2788 0.749649 AATTGGCACCAGTTTTCGCA 59.250 45.000 0.00 0.00 0.00 5.10
2765 2870 3.365520 GTGTTTGAACCGGTTTTGACAAC 59.634 43.478 23.22 18.28 0.00 3.32
2782 3249 1.458064 CAACGGAACTAATGACGCGTT 59.542 47.619 15.53 0.00 0.00 4.84
2814 3296 5.128008 TGTTCTTTTGTAGAAAACCCCCTTG 59.872 40.000 0.00 0.00 44.25 3.61
2817 3299 2.579410 TGTAGAAAACCCCCTTGCTC 57.421 50.000 0.00 0.00 0.00 4.26
2837 3319 1.452025 CTATATTTGACTCGTGGCGCG 59.548 52.381 15.42 15.42 43.01 6.86
2839 3321 1.074319 TATTTGACTCGTGGCGCGTC 61.074 55.000 20.88 2.29 41.18 5.19
2862 3344 2.264794 GAGTGCACCCCCACGTAG 59.735 66.667 14.63 0.00 40.59 3.51
2883 3365 1.078759 CACGAATCTCACACGAGCCC 61.079 60.000 0.00 0.00 39.30 5.19
2919 3401 9.918630 AATGAGGTGCATGATTAAATATAAAGC 57.081 29.630 0.00 0.00 37.28 3.51
2922 3404 9.918630 GAGGTGCATGATTAAATATAAAGCAAT 57.081 29.630 0.00 0.00 0.00 3.56
2925 3407 9.695526 GTGCATGATTAAATATAAAGCAATGGA 57.304 29.630 0.00 0.00 0.00 3.41
3023 3511 1.871039 ACCGGTTCAAACGTGAATCAG 59.129 47.619 0.00 0.00 43.96 2.90
3038 3526 3.563390 TGAATCAGTGCGATTTGTTGTGA 59.437 39.130 0.00 0.00 44.65 3.58
3053 3541 1.150536 GTGACCTGCCCCAAACTCA 59.849 57.895 0.00 0.00 0.00 3.41
3064 3552 4.473196 TGCCCCAAACTCAATACTGATCTA 59.527 41.667 0.00 0.00 0.00 1.98
3137 3665 6.535150 TGTACTTGTATGCAATTAGCTCTCAC 59.465 38.462 0.00 0.00 45.94 3.51
3142 3670 2.191400 TGCAATTAGCTCTCACCTCCT 58.809 47.619 0.00 0.00 45.94 3.69
3161 3690 3.961408 TCCTAGGGCTTCTACTGTGAATC 59.039 47.826 9.46 0.00 0.00 2.52
3174 3703 1.336517 TGTGAATCGGTTCGTCTGTCC 60.337 52.381 3.55 0.00 37.15 4.02
3188 3717 2.093658 GTCTGTCCGATTCCCTGCTAAA 60.094 50.000 0.00 0.00 0.00 1.85
3195 3724 2.860735 CGATTCCCTGCTAAACTCTTCG 59.139 50.000 0.00 0.00 0.00 3.79
3267 3796 2.740826 GCGGCTTGCGGTCTTGTA 60.741 61.111 0.00 0.00 0.00 2.41
3278 3807 1.067071 CGGTCTTGTAGTTCCCTCCAC 60.067 57.143 0.00 0.00 0.00 4.02
3386 3916 1.802960 CGCTCAACAACAGAATCAGCT 59.197 47.619 0.00 0.00 0.00 4.24
3389 3919 3.405831 CTCAACAACAGAATCAGCTGGA 58.594 45.455 15.13 0.57 40.20 3.86
3390 3920 3.141398 TCAACAACAGAATCAGCTGGAC 58.859 45.455 15.13 5.76 40.20 4.02
3391 3921 2.880268 CAACAACAGAATCAGCTGGACA 59.120 45.455 15.13 0.00 40.20 4.02
3394 3924 3.316308 ACAACAGAATCAGCTGGACAAAC 59.684 43.478 15.13 0.30 40.20 2.93
3397 3927 1.425066 AGAATCAGCTGGACAAACCCA 59.575 47.619 15.13 0.00 38.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.344104 CACTACAATTTTGGTCCTGGGAT 58.656 43.478 0.00 0.00 0.00 3.85
3 4 2.231235 GCACTACAATTTTGGTCCTGGG 59.769 50.000 0.00 0.00 0.00 4.45
5 6 3.612479 GCTGCACTACAATTTTGGTCCTG 60.612 47.826 0.00 0.00 0.00 3.86
6 7 2.558359 GCTGCACTACAATTTTGGTCCT 59.442 45.455 0.00 0.00 0.00 3.85
7 8 2.558359 AGCTGCACTACAATTTTGGTCC 59.442 45.455 1.02 0.00 0.00 4.46
8 9 3.923017 AGCTGCACTACAATTTTGGTC 57.077 42.857 1.02 0.00 0.00 4.02
9 10 3.799917 GCAAGCTGCACTACAATTTTGGT 60.800 43.478 1.02 0.00 44.26 3.67
10 11 2.733026 GCAAGCTGCACTACAATTTTGG 59.267 45.455 1.02 0.00 44.26 3.28
23 24 0.529378 AAGCTACCAATGCAAGCTGC 59.471 50.000 10.49 1.58 45.61 5.25
24 25 1.814394 TCAAGCTACCAATGCAAGCTG 59.186 47.619 10.49 5.73 45.61 4.24
26 27 1.468736 GCTCAAGCTACCAATGCAAGC 60.469 52.381 0.00 0.00 38.21 4.01
27 28 1.814394 TGCTCAAGCTACCAATGCAAG 59.186 47.619 3.32 0.00 42.66 4.01
28 29 1.814394 CTGCTCAAGCTACCAATGCAA 59.186 47.619 3.32 0.00 42.66 4.08
29 30 1.456296 CTGCTCAAGCTACCAATGCA 58.544 50.000 3.32 0.00 42.66 3.96
49 50 1.864862 CTCTGGAACTGCAAGCGTG 59.135 57.895 0.00 0.00 37.60 5.34
50 51 1.963338 GCTCTGGAACTGCAAGCGT 60.963 57.895 0.00 0.00 37.60 5.07
51 52 1.303799 ATGCTCTGGAACTGCAAGCG 61.304 55.000 0.27 0.00 40.24 4.68
52 53 1.399791 GTATGCTCTGGAACTGCAAGC 59.600 52.381 0.00 0.00 40.24 4.01
53 54 2.676839 CTGTATGCTCTGGAACTGCAAG 59.323 50.000 0.00 0.00 40.24 4.01
54 55 2.302733 TCTGTATGCTCTGGAACTGCAA 59.697 45.455 0.00 0.00 40.24 4.08
55 56 1.901833 TCTGTATGCTCTGGAACTGCA 59.098 47.619 0.00 0.00 41.13 4.41
56 57 2.680312 TCTGTATGCTCTGGAACTGC 57.320 50.000 0.00 0.00 0.00 4.40
57 58 5.163468 ACTGTATCTGTATGCTCTGGAACTG 60.163 44.000 0.00 0.00 0.00 3.16
58 59 4.959210 ACTGTATCTGTATGCTCTGGAACT 59.041 41.667 0.00 0.00 0.00 3.01
59 60 5.046529 CACTGTATCTGTATGCTCTGGAAC 58.953 45.833 0.00 0.00 0.00 3.62
60 61 4.711846 ACACTGTATCTGTATGCTCTGGAA 59.288 41.667 0.00 0.00 0.00 3.53
61 62 4.098501 CACACTGTATCTGTATGCTCTGGA 59.901 45.833 0.00 0.00 0.00 3.86
62 63 4.366586 CACACTGTATCTGTATGCTCTGG 58.633 47.826 0.00 0.00 0.00 3.86
63 64 3.801050 GCACACTGTATCTGTATGCTCTG 59.199 47.826 3.52 0.00 33.95 3.35
64 65 3.448660 TGCACACTGTATCTGTATGCTCT 59.551 43.478 10.28 0.00 36.83 4.09
65 66 3.553511 GTGCACACTGTATCTGTATGCTC 59.446 47.826 13.17 4.64 36.83 4.26
66 67 3.196469 AGTGCACACTGTATCTGTATGCT 59.804 43.478 21.04 0.00 40.75 3.79
67 68 3.525537 AGTGCACACTGTATCTGTATGC 58.474 45.455 21.04 3.74 40.75 3.14
68 69 6.758416 ACATAAGTGCACACTGTATCTGTATG 59.242 38.462 21.04 8.96 41.58 2.39
69 70 6.758416 CACATAAGTGCACACTGTATCTGTAT 59.242 38.462 21.04 0.00 41.58 2.29
70 71 6.099341 CACATAAGTGCACACTGTATCTGTA 58.901 40.000 21.04 0.00 41.58 2.74
71 72 4.931601 CACATAAGTGCACACTGTATCTGT 59.068 41.667 21.04 7.67 41.58 3.41
72 73 5.460571 CACATAAGTGCACACTGTATCTG 57.539 43.478 21.04 7.06 41.58 2.90
85 86 8.769891 TGTACTATGTTTGACAACACATAAGTG 58.230 33.333 16.77 0.00 45.88 3.16
86 87 8.770828 GTGTACTATGTTTGACAACACATAAGT 58.229 33.333 16.77 16.94 45.88 2.24
87 88 8.769891 TGTGTACTATGTTTGACAACACATAAG 58.230 33.333 16.77 14.21 45.88 1.73
88 89 8.664211 TGTGTACTATGTTTGACAACACATAA 57.336 30.769 16.77 7.27 45.88 1.90
90 91 7.744087 ATGTGTACTATGTTTGACAACACAT 57.256 32.000 17.12 17.12 45.88 3.21
91 92 8.664211 TTATGTGTACTATGTTTGACAACACA 57.336 30.769 14.89 14.89 45.88 3.72
92 93 8.984764 TCTTATGTGTACTATGTTTGACAACAC 58.015 33.333 6.75 6.75 45.88 3.32
94 95 9.973246 CATCTTATGTGTACTATGTTTGACAAC 57.027 33.333 0.00 0.00 0.00 3.32
95 96 9.161629 CCATCTTATGTGTACTATGTTTGACAA 57.838 33.333 0.00 0.00 0.00 3.18
96 97 8.536175 TCCATCTTATGTGTACTATGTTTGACA 58.464 33.333 0.00 0.00 0.00 3.58
97 98 8.942338 TCCATCTTATGTGTACTATGTTTGAC 57.058 34.615 0.00 0.00 0.00 3.18
98 99 9.764363 GATCCATCTTATGTGTACTATGTTTGA 57.236 33.333 0.00 0.00 0.00 2.69
99 100 9.546428 TGATCCATCTTATGTGTACTATGTTTG 57.454 33.333 0.00 0.00 0.00 2.93
106 107 9.499479 GATCAAATGATCCATCTTATGTGTACT 57.501 33.333 11.54 0.00 43.85 2.73
127 128 9.851686 ACAGCAGGTATTAATAATTGAGATCAA 57.148 29.630 10.23 0.00 40.51 2.57
133 134 8.836413 GCAACTACAGCAGGTATTAATAATTGA 58.164 33.333 10.23 0.00 0.00 2.57
134 135 8.840321 AGCAACTACAGCAGGTATTAATAATTG 58.160 33.333 0.00 0.44 0.00 2.32
135 136 8.980481 AGCAACTACAGCAGGTATTAATAATT 57.020 30.769 0.00 0.00 0.00 1.40
136 137 8.840321 CAAGCAACTACAGCAGGTATTAATAAT 58.160 33.333 0.00 0.00 0.00 1.28
137 138 7.282224 CCAAGCAACTACAGCAGGTATTAATAA 59.718 37.037 0.00 0.00 0.00 1.40
138 139 6.765989 CCAAGCAACTACAGCAGGTATTAATA 59.234 38.462 0.00 0.00 0.00 0.98
139 140 5.590259 CCAAGCAACTACAGCAGGTATTAAT 59.410 40.000 0.00 0.00 0.00 1.40
140 141 4.941263 CCAAGCAACTACAGCAGGTATTAA 59.059 41.667 0.00 0.00 0.00 1.40
141 142 4.513442 CCAAGCAACTACAGCAGGTATTA 58.487 43.478 0.00 0.00 0.00 0.98
142 143 3.347216 CCAAGCAACTACAGCAGGTATT 58.653 45.455 0.00 0.00 0.00 1.89
143 144 2.941415 GCCAAGCAACTACAGCAGGTAT 60.941 50.000 0.00 0.00 33.60 2.73
144 145 1.610624 GCCAAGCAACTACAGCAGGTA 60.611 52.381 0.00 0.00 33.60 3.08
145 146 0.890996 GCCAAGCAACTACAGCAGGT 60.891 55.000 0.00 0.00 33.60 4.00
146 147 1.589716 GGCCAAGCAACTACAGCAGG 61.590 60.000 0.00 0.00 34.02 4.85
147 148 0.890542 TGGCCAAGCAACTACAGCAG 60.891 55.000 0.61 0.00 0.00 4.24
148 149 0.890542 CTGGCCAAGCAACTACAGCA 60.891 55.000 7.01 0.00 0.00 4.41
149 150 0.606401 TCTGGCCAAGCAACTACAGC 60.606 55.000 7.01 0.00 0.00 4.40
150 151 1.896220 TTCTGGCCAAGCAACTACAG 58.104 50.000 7.01 0.00 0.00 2.74
151 152 2.356665 TTTCTGGCCAAGCAACTACA 57.643 45.000 7.01 0.00 0.00 2.74
152 153 2.029918 CCTTTTCTGGCCAAGCAACTAC 60.030 50.000 7.01 0.00 0.00 2.73
153 154 2.238521 CCTTTTCTGGCCAAGCAACTA 58.761 47.619 7.01 0.00 0.00 2.24
154 155 1.043022 CCTTTTCTGGCCAAGCAACT 58.957 50.000 7.01 0.00 0.00 3.16
155 156 0.601046 GCCTTTTCTGGCCAAGCAAC 60.601 55.000 7.01 0.00 46.82 4.17
156 157 1.747774 GCCTTTTCTGGCCAAGCAA 59.252 52.632 7.01 0.00 46.82 3.91
157 158 3.458653 GCCTTTTCTGGCCAAGCA 58.541 55.556 7.01 0.00 46.82 3.91
164 165 1.186917 TGCCCATGTGCCTTTTCTGG 61.187 55.000 0.00 0.00 0.00 3.86
165 166 0.037975 GTGCCCATGTGCCTTTTCTG 60.038 55.000 0.00 0.00 0.00 3.02
166 167 0.178953 AGTGCCCATGTGCCTTTTCT 60.179 50.000 0.00 0.00 0.00 2.52
167 168 0.681175 AAGTGCCCATGTGCCTTTTC 59.319 50.000 0.00 0.00 0.00 2.29
168 169 0.681175 GAAGTGCCCATGTGCCTTTT 59.319 50.000 0.00 0.00 0.00 2.27
169 170 0.178953 AGAAGTGCCCATGTGCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
170 171 0.178953 AAGAAGTGCCCATGTGCCTT 60.179 50.000 0.00 0.68 0.00 4.35
171 172 0.178953 AAAGAAGTGCCCATGTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
172 173 0.037975 CAAAGAAGTGCCCATGTGCC 60.038 55.000 0.00 0.00 0.00 5.01
173 174 0.961019 TCAAAGAAGTGCCCATGTGC 59.039 50.000 0.00 0.00 0.00 4.57
174 175 1.955778 TGTCAAAGAAGTGCCCATGTG 59.044 47.619 0.00 0.00 0.00 3.21
175 176 2.363306 TGTCAAAGAAGTGCCCATGT 57.637 45.000 0.00 0.00 0.00 3.21
176 177 2.886523 TCTTGTCAAAGAAGTGCCCATG 59.113 45.455 0.00 0.00 39.52 3.66
177 178 3.228188 TCTTGTCAAAGAAGTGCCCAT 57.772 42.857 0.00 0.00 39.52 4.00
178 179 2.727123 TCTTGTCAAAGAAGTGCCCA 57.273 45.000 0.00 0.00 39.52 5.36
179 180 3.569701 TCAATCTTGTCAAAGAAGTGCCC 59.430 43.478 0.00 0.00 45.44 5.36
180 181 4.036734 TGTCAATCTTGTCAAAGAAGTGCC 59.963 41.667 0.00 0.00 45.44 5.01
181 182 4.972440 GTGTCAATCTTGTCAAAGAAGTGC 59.028 41.667 0.00 0.00 45.44 4.40
182 183 6.122850 TGTGTCAATCTTGTCAAAGAAGTG 57.877 37.500 0.00 0.00 45.44 3.16
183 184 6.757897 TTGTGTCAATCTTGTCAAAGAAGT 57.242 33.333 0.00 0.00 45.44 3.01
184 185 8.638685 AATTTGTGTCAATCTTGTCAAAGAAG 57.361 30.769 0.00 0.00 45.44 2.85
185 186 9.515020 GTAATTTGTGTCAATCTTGTCAAAGAA 57.485 29.630 0.00 2.75 45.44 2.52
186 187 8.681806 TGTAATTTGTGTCAATCTTGTCAAAGA 58.318 29.630 0.00 0.00 46.33 2.52
187 188 8.745837 GTGTAATTTGTGTCAATCTTGTCAAAG 58.254 33.333 0.00 0.00 32.91 2.77
188 189 7.430793 CGTGTAATTTGTGTCAATCTTGTCAAA 59.569 33.333 0.00 0.00 33.39 2.69
189 190 6.909895 CGTGTAATTTGTGTCAATCTTGTCAA 59.090 34.615 0.00 0.00 0.00 3.18
190 191 6.258947 TCGTGTAATTTGTGTCAATCTTGTCA 59.741 34.615 0.00 0.00 0.00 3.58
191 192 6.655062 TCGTGTAATTTGTGTCAATCTTGTC 58.345 36.000 0.00 0.00 0.00 3.18
192 193 6.612247 TCGTGTAATTTGTGTCAATCTTGT 57.388 33.333 0.00 0.00 0.00 3.16
193 194 7.906611 TTTCGTGTAATTTGTGTCAATCTTG 57.093 32.000 0.00 0.00 0.00 3.02
194 195 8.967218 CAATTTCGTGTAATTTGTGTCAATCTT 58.033 29.630 0.00 0.00 0.00 2.40
195 196 7.594758 CCAATTTCGTGTAATTTGTGTCAATCT 59.405 33.333 0.00 0.00 30.03 2.40
196 197 7.381139 ACCAATTTCGTGTAATTTGTGTCAATC 59.619 33.333 0.00 0.00 30.03 2.67
197 198 7.206687 ACCAATTTCGTGTAATTTGTGTCAAT 58.793 30.769 0.00 0.00 30.03 2.57
198 199 6.565234 ACCAATTTCGTGTAATTTGTGTCAA 58.435 32.000 0.00 0.00 30.03 3.18
199 200 6.137794 ACCAATTTCGTGTAATTTGTGTCA 57.862 33.333 0.00 0.00 30.03 3.58
200 201 6.799925 CCTACCAATTTCGTGTAATTTGTGTC 59.200 38.462 0.00 0.00 29.44 3.67
201 202 6.487331 TCCTACCAATTTCGTGTAATTTGTGT 59.513 34.615 0.00 0.00 29.44 3.72
202 203 6.904498 TCCTACCAATTTCGTGTAATTTGTG 58.096 36.000 0.00 0.00 29.44 3.33
203 204 6.938030 TCTCCTACCAATTTCGTGTAATTTGT 59.062 34.615 0.00 0.00 31.01 2.83
204 205 7.119262 ACTCTCCTACCAATTTCGTGTAATTTG 59.881 37.037 0.00 0.00 0.00 2.32
205 206 7.166167 ACTCTCCTACCAATTTCGTGTAATTT 58.834 34.615 0.00 0.00 0.00 1.82
206 207 6.708285 ACTCTCCTACCAATTTCGTGTAATT 58.292 36.000 0.00 0.00 0.00 1.40
207 208 6.295719 ACTCTCCTACCAATTTCGTGTAAT 57.704 37.500 0.00 0.00 0.00 1.89
208 209 5.733620 ACTCTCCTACCAATTTCGTGTAA 57.266 39.130 0.00 0.00 0.00 2.41
209 210 6.839124 TTACTCTCCTACCAATTTCGTGTA 57.161 37.500 0.00 0.00 0.00 2.90
210 211 5.733620 TTACTCTCCTACCAATTTCGTGT 57.266 39.130 0.00 0.00 0.00 4.49
211 212 5.581085 CCTTTACTCTCCTACCAATTTCGTG 59.419 44.000 0.00 0.00 0.00 4.35
212 213 5.247792 ACCTTTACTCTCCTACCAATTTCGT 59.752 40.000 0.00 0.00 0.00 3.85
213 214 5.581085 CACCTTTACTCTCCTACCAATTTCG 59.419 44.000 0.00 0.00 0.00 3.46
214 215 5.354513 GCACCTTTACTCTCCTACCAATTTC 59.645 44.000 0.00 0.00 0.00 2.17
215 216 5.014228 AGCACCTTTACTCTCCTACCAATTT 59.986 40.000 0.00 0.00 0.00 1.82
216 217 4.536489 AGCACCTTTACTCTCCTACCAATT 59.464 41.667 0.00 0.00 0.00 2.32
217 218 4.080863 CAGCACCTTTACTCTCCTACCAAT 60.081 45.833 0.00 0.00 0.00 3.16
218 219 3.260884 CAGCACCTTTACTCTCCTACCAA 59.739 47.826 0.00 0.00 0.00 3.67
219 220 2.832129 CAGCACCTTTACTCTCCTACCA 59.168 50.000 0.00 0.00 0.00 3.25
220 221 2.832733 ACAGCACCTTTACTCTCCTACC 59.167 50.000 0.00 0.00 0.00 3.18
221 222 4.538746 AACAGCACCTTTACTCTCCTAC 57.461 45.455 0.00 0.00 0.00 3.18
222 223 5.562298 AAAACAGCACCTTTACTCTCCTA 57.438 39.130 0.00 0.00 0.00 2.94
223 224 4.439253 AAAACAGCACCTTTACTCTCCT 57.561 40.909 0.00 0.00 0.00 3.69
224 225 4.338400 ACAAAAACAGCACCTTTACTCTCC 59.662 41.667 0.00 0.00 0.00 3.71
225 226 5.500645 ACAAAAACAGCACCTTTACTCTC 57.499 39.130 0.00 0.00 0.00 3.20
226 227 4.035208 CGACAAAAACAGCACCTTTACTCT 59.965 41.667 0.00 0.00 0.00 3.24
227 228 4.201881 ACGACAAAAACAGCACCTTTACTC 60.202 41.667 0.00 0.00 0.00 2.59
228 229 3.692593 ACGACAAAAACAGCACCTTTACT 59.307 39.130 0.00 0.00 0.00 2.24
229 230 4.023739 ACGACAAAAACAGCACCTTTAC 57.976 40.909 0.00 0.00 0.00 2.01
230 231 3.690139 TGACGACAAAAACAGCACCTTTA 59.310 39.130 0.00 0.00 0.00 1.85
231 232 2.490115 TGACGACAAAAACAGCACCTTT 59.510 40.909 0.00 0.00 0.00 3.11
232 233 2.088423 TGACGACAAAAACAGCACCTT 58.912 42.857 0.00 0.00 0.00 3.50
233 234 1.745232 TGACGACAAAAACAGCACCT 58.255 45.000 0.00 0.00 0.00 4.00
234 235 2.032799 TCATGACGACAAAAACAGCACC 59.967 45.455 0.00 0.00 0.00 5.01
235 236 3.332761 TCATGACGACAAAAACAGCAC 57.667 42.857 0.00 0.00 0.00 4.40
236 237 4.362932 TTTCATGACGACAAAAACAGCA 57.637 36.364 0.00 0.00 0.00 4.41
237 238 5.034152 TCTTTTCATGACGACAAAAACAGC 58.966 37.500 0.00 0.00 0.00 4.40
238 239 6.027131 TGTCTTTTCATGACGACAAAAACAG 58.973 36.000 15.47 0.00 37.26 3.16
239 240 5.944013 TGTCTTTTCATGACGACAAAAACA 58.056 33.333 15.47 6.08 37.26 2.83
240 241 6.526674 ACTTGTCTTTTCATGACGACAAAAAC 59.473 34.615 23.57 10.03 43.35 2.43
241 242 6.616947 ACTTGTCTTTTCATGACGACAAAAA 58.383 32.000 23.57 10.34 43.35 1.94
242 243 6.189677 ACTTGTCTTTTCATGACGACAAAA 57.810 33.333 23.57 10.89 43.35 2.44
243 244 5.811399 ACTTGTCTTTTCATGACGACAAA 57.189 34.783 23.57 11.17 43.35 2.83
244 245 6.511121 GCTTACTTGTCTTTTCATGACGACAA 60.511 38.462 22.71 22.71 42.23 3.18
245 246 5.050363 GCTTACTTGTCTTTTCATGACGACA 60.050 40.000 14.38 14.38 37.26 4.35
246 247 5.050363 TGCTTACTTGTCTTTTCATGACGAC 60.050 40.000 0.00 3.47 37.26 4.34
247 248 5.050363 GTGCTTACTTGTCTTTTCATGACGA 60.050 40.000 0.00 0.00 37.26 4.20
248 249 5.140177 GTGCTTACTTGTCTTTTCATGACG 58.860 41.667 0.00 0.00 37.26 4.35
249 250 5.239525 AGGTGCTTACTTGTCTTTTCATGAC 59.760 40.000 0.00 0.00 35.21 3.06
250 251 5.239306 CAGGTGCTTACTTGTCTTTTCATGA 59.761 40.000 0.00 0.00 0.00 3.07
251 252 5.455392 CAGGTGCTTACTTGTCTTTTCATG 58.545 41.667 0.00 0.00 0.00 3.07
252 253 4.022849 GCAGGTGCTTACTTGTCTTTTCAT 60.023 41.667 0.00 0.00 38.21 2.57
253 254 3.315191 GCAGGTGCTTACTTGTCTTTTCA 59.685 43.478 0.00 0.00 38.21 2.69
254 255 3.607078 CGCAGGTGCTTACTTGTCTTTTC 60.607 47.826 0.00 0.00 39.32 2.29
255 256 2.290641 CGCAGGTGCTTACTTGTCTTTT 59.709 45.455 0.00 0.00 39.32 2.27
256 257 1.873591 CGCAGGTGCTTACTTGTCTTT 59.126 47.619 0.00 0.00 39.32 2.52
257 258 1.202651 ACGCAGGTGCTTACTTGTCTT 60.203 47.619 0.00 0.00 39.32 3.01
258 259 0.393077 ACGCAGGTGCTTACTTGTCT 59.607 50.000 0.00 0.00 39.32 3.41
259 260 2.074547 TACGCAGGTGCTTACTTGTC 57.925 50.000 0.00 0.00 39.32 3.18
260 261 2.762535 ATACGCAGGTGCTTACTTGT 57.237 45.000 0.00 0.00 39.32 3.16
261 262 4.419522 AAAATACGCAGGTGCTTACTTG 57.580 40.909 0.00 0.00 39.32 3.16
283 284 5.364157 ACAATAGGGCAACTTGTGGTAAAAA 59.636 36.000 0.00 0.00 32.16 1.94
284 285 4.896482 ACAATAGGGCAACTTGTGGTAAAA 59.104 37.500 0.00 0.00 32.16 1.52
285 286 4.475345 ACAATAGGGCAACTTGTGGTAAA 58.525 39.130 0.00 0.00 32.16 2.01
286 287 4.107127 ACAATAGGGCAACTTGTGGTAA 57.893 40.909 0.00 0.00 32.16 2.85
287 288 3.799432 ACAATAGGGCAACTTGTGGTA 57.201 42.857 0.00 0.00 32.16 3.25
288 289 2.675658 ACAATAGGGCAACTTGTGGT 57.324 45.000 0.00 0.00 32.16 4.16
289 290 5.659440 ATTAACAATAGGGCAACTTGTGG 57.341 39.130 0.00 0.00 33.60 4.17
290 291 6.128580 GCAAATTAACAATAGGGCAACTTGTG 60.129 38.462 0.00 0.00 33.60 3.33
291 292 5.931724 GCAAATTAACAATAGGGCAACTTGT 59.068 36.000 0.00 0.00 34.71 3.16
292 293 5.931146 TGCAAATTAACAATAGGGCAACTTG 59.069 36.000 0.00 0.00 0.00 3.16
293 294 6.107901 TGCAAATTAACAATAGGGCAACTT 57.892 33.333 0.00 0.00 0.00 2.66
294 295 5.245977 ACTGCAAATTAACAATAGGGCAACT 59.754 36.000 0.00 0.00 0.00 3.16
295 296 5.478407 ACTGCAAATTAACAATAGGGCAAC 58.522 37.500 0.00 0.00 0.00 4.17
296 297 5.736951 ACTGCAAATTAACAATAGGGCAA 57.263 34.783 0.00 0.00 0.00 4.52
297 298 5.712446 TGTACTGCAAATTAACAATAGGGCA 59.288 36.000 0.00 0.00 0.00 5.36
298 299 6.202516 TGTACTGCAAATTAACAATAGGGC 57.797 37.500 0.00 0.00 0.00 5.19
335 336 8.860128 GCATAAAGGCTCAATACAAAACTAAAC 58.140 33.333 0.00 0.00 0.00 2.01
340 341 9.023967 CATAAGCATAAAGGCTCAATACAAAAC 57.976 33.333 0.00 0.00 45.07 2.43
348 349 5.260424 TCCAACATAAGCATAAAGGCTCAA 58.740 37.500 0.00 0.00 45.07 3.02
349 350 4.854173 TCCAACATAAGCATAAAGGCTCA 58.146 39.130 0.00 0.00 45.07 4.26
350 351 6.486657 TGTATCCAACATAAGCATAAAGGCTC 59.513 38.462 0.00 0.00 36.69 4.70
356 357 7.432869 GCCATTTGTATCCAACATAAGCATAA 58.567 34.615 0.00 0.00 38.10 1.90
358 359 5.507817 CGCCATTTGTATCCAACATAAGCAT 60.508 40.000 0.00 0.00 38.10 3.79
371 372 1.271934 TGTTGCAAGCGCCATTTGTAT 59.728 42.857 2.29 0.00 37.32 2.29
415 416 1.567504 CCGGCTAATCGGTTACAGTG 58.432 55.000 0.00 0.00 44.60 3.66
437 438 1.232119 TCATGCGTGCATCATGGATC 58.768 50.000 23.16 0.00 41.11 3.36
438 439 1.905637 ATCATGCGTGCATCATGGAT 58.094 45.000 23.16 15.63 41.11 3.41
439 440 1.605232 GAATCATGCGTGCATCATGGA 59.395 47.619 23.16 14.54 41.11 3.41
440 441 1.335597 GGAATCATGCGTGCATCATGG 60.336 52.381 23.16 11.09 41.11 3.66
441 442 1.335496 TGGAATCATGCGTGCATCATG 59.665 47.619 19.74 19.74 41.87 3.07
442 443 1.682740 TGGAATCATGCGTGCATCAT 58.317 45.000 3.96 0.00 33.90 2.45
443 444 1.461559 TTGGAATCATGCGTGCATCA 58.538 45.000 3.96 0.00 33.90 3.07
444 445 2.565210 TTTGGAATCATGCGTGCATC 57.435 45.000 3.96 1.63 33.90 3.91
445 446 2.231964 AGTTTTGGAATCATGCGTGCAT 59.768 40.909 0.51 0.51 37.08 3.96
446 447 1.612950 AGTTTTGGAATCATGCGTGCA 59.387 42.857 0.00 0.00 0.00 4.57
447 448 1.987770 CAGTTTTGGAATCATGCGTGC 59.012 47.619 0.00 0.00 0.00 5.34
472 473 2.939103 GGTCCTTCAATTGTCTGATCGG 59.061 50.000 5.13 0.00 0.00 4.18
505 506 2.545946 GGCGGACTTTCTTATGAGCATC 59.454 50.000 0.00 0.00 0.00 3.91
507 508 1.277842 TGGCGGACTTTCTTATGAGCA 59.722 47.619 0.00 0.00 0.00 4.26
508 509 2.024176 TGGCGGACTTTCTTATGAGC 57.976 50.000 0.00 0.00 0.00 4.26
509 510 4.635765 TCAAATGGCGGACTTTCTTATGAG 59.364 41.667 0.00 0.00 0.00 2.90
517 518 5.874261 CCAATTAAATCAAATGGCGGACTTT 59.126 36.000 0.00 0.00 0.00 2.66
534 535 3.507233 CAGAAGGCACAAGCTCCAATTAA 59.493 43.478 0.00 0.00 41.70 1.40
536 537 1.891150 CAGAAGGCACAAGCTCCAATT 59.109 47.619 0.00 0.00 41.70 2.32
537 538 1.074405 TCAGAAGGCACAAGCTCCAAT 59.926 47.619 0.00 0.00 41.70 3.16
538 539 0.473755 TCAGAAGGCACAAGCTCCAA 59.526 50.000 0.00 0.00 41.70 3.53
540 541 1.831580 AATCAGAAGGCACAAGCTCC 58.168 50.000 0.00 0.00 41.70 4.70
541 542 2.555757 ACAAATCAGAAGGCACAAGCTC 59.444 45.455 0.00 0.00 41.70 4.09
544 545 4.154918 GGAGTACAAATCAGAAGGCACAAG 59.845 45.833 0.00 0.00 0.00 3.16
545 546 4.072131 GGAGTACAAATCAGAAGGCACAA 58.928 43.478 0.00 0.00 0.00 3.33
546 547 3.327757 AGGAGTACAAATCAGAAGGCACA 59.672 43.478 0.00 0.00 0.00 4.57
548 549 4.640771 AAGGAGTACAAATCAGAAGGCA 57.359 40.909 0.00 0.00 0.00 4.75
549 550 5.241728 ACAAAAGGAGTACAAATCAGAAGGC 59.758 40.000 0.00 0.00 0.00 4.35
579 580 9.436957 ACGAAGTTATATGATTTCTTCTTGTGT 57.563 29.630 0.00 0.00 37.78 3.72
600 601 2.534939 CGGCGCAAAGAATCTAACGAAG 60.535 50.000 10.83 0.00 0.00 3.79
604 615 2.158841 TGAACGGCGCAAAGAATCTAAC 59.841 45.455 10.83 0.00 0.00 2.34
611 622 0.028770 CAAACTGAACGGCGCAAAGA 59.971 50.000 10.83 0.00 0.00 2.52
717 728 3.512724 TGGGGAGTTAGTTCCTTTCTACG 59.487 47.826 0.00 0.00 37.40 3.51
726 737 3.502595 GCTGTTTTCTGGGGAGTTAGTTC 59.497 47.826 0.00 0.00 0.00 3.01
730 741 2.708861 TCTGCTGTTTTCTGGGGAGTTA 59.291 45.455 0.00 0.00 0.00 2.24
953 965 2.580470 GATCGATGGCACGCAGTCG 61.580 63.158 0.54 1.17 41.61 4.18
989 1002 3.418047 TCCGTCGCCATGATCTAATCTA 58.582 45.455 0.00 0.00 0.00 1.98
990 1003 2.230025 CTCCGTCGCCATGATCTAATCT 59.770 50.000 0.00 0.00 0.00 2.40
991 1004 2.600731 CTCCGTCGCCATGATCTAATC 58.399 52.381 0.00 0.00 0.00 1.75
992 1005 1.273606 CCTCCGTCGCCATGATCTAAT 59.726 52.381 0.00 0.00 0.00 1.73
993 1006 0.673985 CCTCCGTCGCCATGATCTAA 59.326 55.000 0.00 0.00 0.00 2.10
994 1007 1.806461 GCCTCCGTCGCCATGATCTA 61.806 60.000 0.00 0.00 0.00 1.98
995 1008 3.133014 CCTCCGTCGCCATGATCT 58.867 61.111 0.00 0.00 0.00 2.75
1392 1405 0.107214 TCCATGCCCGGAAGTTCATC 60.107 55.000 0.73 0.00 29.93 2.92
1689 1702 2.202690 TCGATGTTGGCGGCGTAG 60.203 61.111 9.37 0.00 0.00 3.51
1951 1964 2.048127 GTCCACGTGCCTCAGGAC 60.048 66.667 10.91 7.43 43.18 3.85
2052 2065 2.510238 CCGAAGAAGAGCCGGCAG 60.510 66.667 31.54 8.59 36.62 4.85
2165 2178 1.332028 CGTTTAGCGCCACGATGAATC 60.332 52.381 16.95 0.00 38.76 2.52
2340 2353 0.813610 TCATTTGGTATCGCCGGCTG 60.814 55.000 26.68 18.23 41.21 4.85
2370 2383 2.674852 CTCATCAACCTTGGACGACATG 59.325 50.000 0.00 0.00 0.00 3.21
2451 2465 3.074412 ACTCCTAAACAGCAAATCCGTG 58.926 45.455 0.00 0.00 0.00 4.94
2481 2507 1.972075 TGGACATTCGTTGGTGGACTA 59.028 47.619 0.00 0.00 0.00 2.59
2482 2508 0.762418 TGGACATTCGTTGGTGGACT 59.238 50.000 0.00 0.00 0.00 3.85
2483 2509 1.535462 CTTGGACATTCGTTGGTGGAC 59.465 52.381 0.00 0.00 0.00 4.02
2521 2550 1.697432 TGTGGGTTTGACCAGTAGAGG 59.303 52.381 0.00 0.00 42.20 3.69
2644 2679 7.094118 GCCAATTTGTTACCCTAGACACAAATA 60.094 37.037 15.76 0.00 45.03 1.40
2652 2687 3.074687 TGGTGCCAATTTGTTACCCTAGA 59.925 43.478 13.56 0.00 0.00 2.43
2742 2847 2.557056 TGTCAAAACCGGTTCAAACACA 59.443 40.909 22.53 15.62 0.00 3.72
2765 2870 1.065358 ACAACGCGTCATTAGTTCCG 58.935 50.000 14.44 0.00 0.00 4.30
2769 2874 0.511221 GCACACAACGCGTCATTAGT 59.489 50.000 14.44 4.44 0.00 2.24
2770 2875 0.510790 TGCACACAACGCGTCATTAG 59.489 50.000 14.44 4.21 0.00 1.73
2771 2876 1.136113 CATGCACACAACGCGTCATTA 60.136 47.619 14.44 0.00 0.00 1.90
2772 2877 0.385849 CATGCACACAACGCGTCATT 60.386 50.000 14.44 0.00 0.00 2.57
2782 3249 5.826601 TTCTACAAAAGAACATGCACACA 57.173 34.783 0.00 0.00 39.36 3.72
2814 3296 2.726760 CGCCACGAGTCAAATATAGAGC 59.273 50.000 0.00 0.00 0.00 4.09
2837 3319 4.699522 GGGTGCACTCCCCACGAC 62.700 72.222 17.98 0.00 42.15 4.34
2862 3344 0.985549 GCTCGTGTGAGATTCGTGTC 59.014 55.000 0.00 0.00 45.57 3.67
2922 3404 7.384660 GTGCATGTTCATTTGTAGAAAAATCCA 59.615 33.333 0.00 0.00 0.00 3.41
2925 3407 8.714179 CATGTGCATGTTCATTTGTAGAAAAAT 58.286 29.630 4.13 0.00 34.23 1.82
2926 3408 7.924947 TCATGTGCATGTTCATTTGTAGAAAAA 59.075 29.630 11.38 0.00 39.72 1.94
2994 3482 2.190161 GTTTGAACCGGTTTTGACAGC 58.810 47.619 23.22 7.16 0.00 4.40
3023 3511 1.925946 GCAGGTCACAACAAATCGCAC 60.926 52.381 0.00 0.00 0.00 5.34
3038 3526 1.710809 AGTATTGAGTTTGGGGCAGGT 59.289 47.619 0.00 0.00 0.00 4.00
3072 3560 8.769891 GGTAACGAATTGTTTCCATTTTTCAAT 58.230 29.630 4.39 0.00 44.86 2.57
3073 3561 7.224949 GGGTAACGAATTGTTTCCATTTTTCAA 59.775 33.333 10.56 0.00 46.69 2.69
3084 3572 3.754850 GTGGCTAGGGTAACGAATTGTTT 59.245 43.478 0.00 0.00 42.09 2.83
3086 3574 2.303600 TGTGGCTAGGGTAACGAATTGT 59.696 45.455 0.00 0.00 37.60 2.71
3137 3665 2.035632 CACAGTAGAAGCCCTAGGAGG 58.964 57.143 11.48 0.00 34.30 4.30
3142 3670 2.693591 CCGATTCACAGTAGAAGCCCTA 59.306 50.000 0.00 0.00 30.47 3.53
3161 3690 0.801067 GGAATCGGACAGACGAACCG 60.801 60.000 0.00 0.00 46.92 4.44
3174 3703 2.860735 CGAAGAGTTTAGCAGGGAATCG 59.139 50.000 0.00 0.00 0.00 3.34
3176 3705 2.681097 GCCGAAGAGTTTAGCAGGGAAT 60.681 50.000 0.00 0.00 0.00 3.01
3229 3758 1.674057 GAGGAGGTGTGTGTGGGAG 59.326 63.158 0.00 0.00 0.00 4.30
3230 3759 1.841556 GGAGGAGGTGTGTGTGGGA 60.842 63.158 0.00 0.00 0.00 4.37
3231 3760 2.750350 GGAGGAGGTGTGTGTGGG 59.250 66.667 0.00 0.00 0.00 4.61
3278 3807 1.816259 ACCACCAACACAACGACGG 60.816 57.895 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.