Multiple sequence alignment - TraesCS5D01G397400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G397400 chr5D 100.000 5638 0 0 718 6355 464134047 464128410 0.000000e+00 10412.0
1 TraesCS5D01G397400 chr5D 100.000 379 0 0 1 379 464134764 464134386 0.000000e+00 701.0
2 TraesCS5D01G397400 chr5D 88.158 76 5 4 5024 5097 499408643 499408716 3.160000e-13 87.9
3 TraesCS5D01G397400 chr5A 91.536 3438 234 30 1518 4931 584617919 584614515 0.000000e+00 4684.0
4 TraesCS5D01G397400 chr5A 91.664 3299 209 44 1750 5018 43538839 43542101 0.000000e+00 4508.0
5 TraesCS5D01G397400 chr5A 92.086 2502 170 16 1742 4228 584577160 584574672 0.000000e+00 3498.0
6 TraesCS5D01G397400 chr5A 88.780 713 55 13 5063 5768 43542085 43542779 0.000000e+00 850.0
7 TraesCS5D01G397400 chr5A 90.985 599 46 6 5119 5713 584614517 584613923 0.000000e+00 800.0
8 TraesCS5D01G397400 chr5A 85.997 657 43 21 772 1386 584618713 584618064 0.000000e+00 658.0
9 TraesCS5D01G397400 chr5A 84.082 534 46 25 763 1264 43533293 43533819 4.460000e-131 479.0
10 TraesCS5D01G397400 chr5A 83.398 512 45 24 785 1263 43532184 43532688 7.560000e-119 438.0
11 TraesCS5D01G397400 chr5A 83.333 492 39 21 5807 6292 584613921 584613467 1.270000e-111 414.0
12 TraesCS5D01G397400 chr5A 81.925 509 48 19 912 1387 43535832 43536329 2.150000e-104 390.0
13 TraesCS5D01G397400 chr5A 83.846 260 20 6 6031 6289 43543643 43543881 1.780000e-55 228.0
14 TraesCS5D01G397400 chr5A 84.416 231 25 6 5807 6036 43542772 43542992 3.860000e-52 217.0
15 TraesCS5D01G397400 chr5A 95.506 89 1 3 6216 6302 599771116 599771029 8.590000e-29 139.0
16 TraesCS5D01G397400 chr5A 95.349 86 4 0 6202 6287 584520914 584520829 3.090000e-28 137.0
17 TraesCS5D01G397400 chr5A 85.526 76 3 6 5024 5097 259640619 259640550 8.840000e-09 73.1
18 TraesCS5D01G397400 chr5B 91.192 3497 228 51 1551 5018 57700351 57703796 0.000000e+00 4678.0
19 TraesCS5D01G397400 chr5B 92.142 2685 146 33 1504 4177 571235164 571232534 0.000000e+00 3729.0
20 TraesCS5D01G397400 chr5B 90.224 849 58 18 4171 4997 571232424 571231579 0.000000e+00 1085.0
21 TraesCS5D01G397400 chr5B 88.499 713 56 14 5063 5768 57703780 57704473 0.000000e+00 839.0
22 TraesCS5D01G397400 chr5B 88.095 714 54 18 5062 5768 571231580 571230891 0.000000e+00 819.0
23 TraesCS5D01G397400 chr5B 87.246 690 37 20 726 1382 571235968 571235297 0.000000e+00 739.0
24 TraesCS5D01G397400 chr5B 90.488 410 28 9 5943 6349 571230827 571230426 1.210000e-146 531.0
25 TraesCS5D01G397400 chr5B 83.832 501 43 20 912 1387 57699803 57700290 5.850000e-120 442.0
26 TraesCS5D01G397400 chr5B 83.421 380 31 14 5913 6289 57704508 57704858 2.210000e-84 324.0
27 TraesCS5D01G397400 chr5B 97.619 84 0 2 6205 6288 571190405 571190324 6.640000e-30 143.0
28 TraesCS5D01G397400 chr5B 94.737 76 3 1 5807 5882 571230898 571230824 4.030000e-22 117.0
29 TraesCS5D01G397400 chr5B 96.429 56 1 1 5762 5816 636601231 636601176 2.440000e-14 91.6
30 TraesCS5D01G397400 chrUn 96.278 403 14 1 2414 2816 478497178 478496777 0.000000e+00 660.0
31 TraesCS5D01G397400 chrUn 91.935 62 1 4 5052 5111 132121190 132121131 4.080000e-12 84.2
32 TraesCS5D01G397400 chr2D 98.540 274 3 1 1 274 346097724 346097452 3.450000e-132 483.0
33 TraesCS5D01G397400 chr2D 97.436 273 6 1 1 273 448652177 448651906 1.250000e-126 464.0
34 TraesCS5D01G397400 chr2D 97.091 275 7 1 1 275 156823226 156823499 4.490000e-126 462.0
35 TraesCS5D01G397400 chr6D 97.810 274 5 1 1 274 328353158 328353430 7.460000e-129 472.0
36 TraesCS5D01G397400 chr4D 97.802 273 5 1 2 274 333462441 333462712 2.680000e-128 470.0
37 TraesCS5D01G397400 chr7D 97.080 274 5 3 1 274 192142585 192142315 5.810000e-125 459.0
38 TraesCS5D01G397400 chr7D 98.780 82 0 1 6207 6288 553851074 553851154 1.850000e-30 145.0
39 TraesCS5D01G397400 chr7D 96.491 57 1 1 5761 5816 634069548 634069492 6.780000e-15 93.5
40 TraesCS5D01G397400 chr1A 96.403 278 9 1 1 278 554093296 554093572 2.090000e-124 457.0
41 TraesCS5D01G397400 chr7A 96.350 274 9 1 1 274 735617465 735617737 3.490000e-122 449.0
42 TraesCS5D01G397400 chr7A 96.364 55 2 0 5762 5816 646081413 646081359 2.440000e-14 91.6
43 TraesCS5D01G397400 chr6A 96.000 275 10 1 1 275 158309651 158309924 4.520000e-121 446.0
44 TraesCS5D01G397400 chr1B 93.204 103 6 1 6187 6289 603214297 603214196 3.970000e-32 150.0
45 TraesCS5D01G397400 chr1B 93.182 44 3 0 4963 5006 481710715 481710758 1.480000e-06 65.8
46 TraesCS5D01G397400 chr7B 98.113 53 1 0 5763 5815 652980504 652980452 6.780000e-15 93.5
47 TraesCS5D01G397400 chr7B 96.429 56 1 1 5761 5815 479326988 479326933 2.440000e-14 91.6
48 TraesCS5D01G397400 chr7B 90.625 64 4 1 5748 5811 245982758 245982819 4.080000e-12 84.2
49 TraesCS5D01G397400 chr7B 90.769 65 3 2 5031 5094 385504285 385504223 4.080000e-12 84.2
50 TraesCS5D01G397400 chr2B 95.000 60 1 2 5759 5816 357917548 357917607 6.780000e-15 93.5
51 TraesCS5D01G397400 chr2B 96.429 56 1 1 5761 5815 77856057 77856112 2.440000e-14 91.6
52 TraesCS5D01G397400 chr6B 91.304 69 3 1 5758 5823 18260052 18260120 2.440000e-14 91.6
53 TraesCS5D01G397400 chr3B 87.342 79 2 7 5024 5096 10116406 10116482 4.080000e-12 84.2
54 TraesCS5D01G397400 chr2A 90.323 62 4 2 5052 5112 243760142 243760202 5.280000e-11 80.5
55 TraesCS5D01G397400 chr1D 100.000 33 0 0 4963 4995 470409323 470409291 1.910000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G397400 chr5D 464128410 464134764 6354 True 5556.500000 10412 100.000000 1 6355 2 chr5D.!!$R1 6354
1 TraesCS5D01G397400 chr5A 584574672 584577160 2488 True 3498.000000 3498 92.086000 1742 4228 1 chr5A.!!$R3 2486
2 TraesCS5D01G397400 chr5A 584613467 584618713 5246 True 1639.000000 4684 87.962750 772 6292 4 chr5A.!!$R5 5520
3 TraesCS5D01G397400 chr5A 43532184 43543881 11697 False 1015.714286 4508 85.444429 763 6289 7 chr5A.!!$F1 5526
4 TraesCS5D01G397400 chr5B 57699803 57704858 5055 False 1570.750000 4678 86.736000 912 6289 4 chr5B.!!$F1 5377
5 TraesCS5D01G397400 chr5B 571230426 571235968 5542 True 1170.000000 3729 90.488667 726 6349 6 chr5B.!!$R3 5623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.034896 AACAGTAGAGCCGGTGTTGG 59.965 55.000 1.90 0.00 31.94 3.77 F
151 152 0.035056 AAGTCCCTCTTCGGCCAATG 60.035 55.000 2.24 0.00 0.00 2.82 F
185 186 0.035630 CCCTCTTCAGCCAACAGGAG 60.036 60.000 0.00 0.00 0.00 3.69 F
186 187 0.035630 CCTCTTCAGCCAACAGGAGG 60.036 60.000 0.00 0.00 35.16 4.30 F
1477 5101 0.179000 CTGAAGGGGATTGAGTCGGG 59.821 60.000 0.00 0.00 0.00 5.14 F
1532 5195 0.613777 CCAGTCAGTGGTACCCTTCC 59.386 60.000 10.07 0.00 42.17 3.46 F
1536 5199 1.065418 GTCAGTGGTACCCTTCCATGG 60.065 57.143 10.07 4.97 37.30 3.66 F
2013 7945 1.594331 GTCAAACCTCTGCCGAAGTT 58.406 50.000 0.00 0.00 0.00 2.66 F
3351 9298 2.286418 CGCTTTCTTGTGACCAAGTGTC 60.286 50.000 2.69 0.00 46.70 3.67 F
4069 10022 0.810031 CTCGGGTGGTTATGCGGAAG 60.810 60.000 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 7813 0.104855 TGGCGCCTGATACTAAGCTG 59.895 55.000 29.70 0.00 0.00 4.24 R
1958 7890 0.248949 GCAGGTAGATCGTTCCGGTC 60.249 60.000 0.00 0.00 37.24 4.79 R
2002 7934 4.607293 ATGCATCTATAACTTCGGCAGA 57.393 40.909 0.00 0.00 32.84 4.26 R
2006 7938 5.237127 TGCAGAAATGCATCTATAACTTCGG 59.763 40.000 0.00 0.08 40.23 4.30 R
2674 8609 1.361668 CGCCCATCGACTTGAACAGG 61.362 60.000 0.00 0.00 41.67 4.00 R
2791 8726 3.945285 GACTGGTTCCAACTTCTTTGTCA 59.055 43.478 0.00 0.00 32.71 3.58 R
3267 9209 5.238650 GTCACCAGAAAATTGTATATCCCGG 59.761 44.000 0.00 0.00 0.00 5.73 R
3783 9731 2.945008 CGGAACATCATGCATACAAGGT 59.055 45.455 0.00 0.00 0.00 3.50 R
4717 10796 0.607489 ATGGACACAACCTGCAGCTC 60.607 55.000 8.66 0.00 0.00 4.09 R
5631 11734 0.370273 CTGACGCGGGAAAAAGATCG 59.630 55.000 12.47 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.129109 TGAATTTTCTAAAACAGTAGAGCCG 57.871 36.000 0.00 0.00 31.80 5.52
61 62 6.148811 TGAATTTTCTAAAACAGTAGAGCCGG 59.851 38.462 0.00 0.00 31.80 6.13
62 63 4.612264 TTTCTAAAACAGTAGAGCCGGT 57.388 40.909 1.90 0.00 31.80 5.28
63 64 3.587797 TCTAAAACAGTAGAGCCGGTG 57.412 47.619 1.90 0.00 0.00 4.94
64 65 2.895404 TCTAAAACAGTAGAGCCGGTGT 59.105 45.455 1.90 0.00 0.00 4.16
65 66 2.632987 AAAACAGTAGAGCCGGTGTT 57.367 45.000 1.90 0.95 34.60 3.32
66 67 1.878953 AAACAGTAGAGCCGGTGTTG 58.121 50.000 1.90 0.00 33.45 3.33
67 68 0.034896 AACAGTAGAGCCGGTGTTGG 59.965 55.000 1.90 0.00 31.94 3.77
77 78 2.359975 GGTGTTGGCCGAAGAGGG 60.360 66.667 0.00 0.00 41.48 4.30
78 79 2.747686 GTGTTGGCCGAAGAGGGA 59.252 61.111 0.00 0.00 41.48 4.20
79 80 1.671379 GTGTTGGCCGAAGAGGGAC 60.671 63.158 0.00 0.00 41.48 4.46
94 95 3.421567 GGACTCTTTGGCCAACTGT 57.578 52.632 20.35 16.85 45.54 3.55
95 96 1.692411 GGACTCTTTGGCCAACTGTT 58.308 50.000 20.35 2.67 45.54 3.16
96 97 1.338020 GGACTCTTTGGCCAACTGTTG 59.662 52.381 20.35 13.50 45.54 3.33
105 106 3.568093 CCAACTGTTGGCCGAAAAG 57.432 52.632 25.21 0.00 45.17 2.27
106 107 0.744281 CCAACTGTTGGCCGAAAAGT 59.256 50.000 25.21 0.00 45.17 2.66
107 108 1.269051 CCAACTGTTGGCCGAAAAGTC 60.269 52.381 25.21 0.00 45.17 3.01
108 109 1.029681 AACTGTTGGCCGAAAAGTCC 58.970 50.000 9.54 0.00 0.00 3.85
109 110 0.182775 ACTGTTGGCCGAAAAGTCCT 59.817 50.000 0.00 0.00 0.00 3.85
110 111 1.318576 CTGTTGGCCGAAAAGTCCTT 58.681 50.000 0.00 0.00 0.00 3.36
111 112 1.681264 CTGTTGGCCGAAAAGTCCTTT 59.319 47.619 0.00 0.00 0.00 3.11
112 113 2.100749 CTGTTGGCCGAAAAGTCCTTTT 59.899 45.455 4.75 4.75 44.59 2.27
113 114 2.498078 TGTTGGCCGAAAAGTCCTTTTT 59.502 40.909 6.48 0.00 42.26 1.94
114 115 2.863740 GTTGGCCGAAAAGTCCTTTTTG 59.136 45.455 11.29 11.29 42.26 2.44
118 119 2.880963 CGAAAAGTCCTTTTTGGCCA 57.119 45.000 0.00 0.00 42.26 5.36
119 120 2.742774 CGAAAAGTCCTTTTTGGCCAG 58.257 47.619 5.11 0.00 42.26 4.85
120 121 2.483876 GAAAAGTCCTTTTTGGCCAGC 58.516 47.619 5.11 0.00 42.26 4.85
121 122 0.389025 AAAGTCCTTTTTGGCCAGCG 59.611 50.000 5.11 0.00 35.26 5.18
122 123 1.463553 AAGTCCTTTTTGGCCAGCGG 61.464 55.000 5.11 5.41 35.26 5.52
123 124 2.197324 TCCTTTTTGGCCAGCGGT 59.803 55.556 5.11 0.00 35.26 5.68
124 125 1.456705 TCCTTTTTGGCCAGCGGTT 60.457 52.632 5.11 0.00 35.26 4.44
125 126 1.300853 CCTTTTTGGCCAGCGGTTG 60.301 57.895 5.11 0.00 0.00 3.77
138 139 3.362262 GGTTGGCCGAAAAGTCCC 58.638 61.111 0.00 0.00 0.00 4.46
139 140 1.228459 GGTTGGCCGAAAAGTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
140 141 1.241990 GGTTGGCCGAAAAGTCCCTC 61.242 60.000 0.00 0.00 0.00 4.30
141 142 0.250770 GTTGGCCGAAAAGTCCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
142 143 0.476771 TTGGCCGAAAAGTCCCTCTT 59.523 50.000 0.00 0.00 38.10 2.85
143 144 0.036306 TGGCCGAAAAGTCCCTCTTC 59.964 55.000 0.00 0.00 35.02 2.87
144 145 1.019805 GGCCGAAAAGTCCCTCTTCG 61.020 60.000 0.00 0.00 41.18 3.79
146 147 2.457080 CGAAAAGTCCCTCTTCGGC 58.543 57.895 0.00 0.00 38.57 5.54
147 148 1.019805 CGAAAAGTCCCTCTTCGGCC 61.020 60.000 0.00 0.00 38.57 6.13
148 149 0.036306 GAAAAGTCCCTCTTCGGCCA 59.964 55.000 2.24 0.00 35.02 5.36
149 150 0.476771 AAAAGTCCCTCTTCGGCCAA 59.523 50.000 2.24 0.00 35.02 4.52
150 151 0.698818 AAAGTCCCTCTTCGGCCAAT 59.301 50.000 2.24 0.00 35.02 3.16
151 152 0.035056 AAGTCCCTCTTCGGCCAATG 60.035 55.000 2.24 0.00 0.00 2.82
152 153 1.452108 GTCCCTCTTCGGCCAATGG 60.452 63.158 2.24 0.00 0.00 3.16
153 154 1.923395 TCCCTCTTCGGCCAATGGT 60.923 57.895 2.24 0.00 0.00 3.55
154 155 0.619255 TCCCTCTTCGGCCAATGGTA 60.619 55.000 2.24 0.00 0.00 3.25
155 156 0.179045 CCCTCTTCGGCCAATGGTAG 60.179 60.000 2.24 0.00 0.00 3.18
156 157 0.179045 CCTCTTCGGCCAATGGTAGG 60.179 60.000 2.24 0.00 0.00 3.18
162 163 4.329831 GCCAATGGTAGGCCGAAA 57.670 55.556 0.00 0.00 46.50 3.46
163 164 2.573920 GCCAATGGTAGGCCGAAAA 58.426 52.632 0.00 0.00 46.50 2.29
164 165 0.455815 GCCAATGGTAGGCCGAAAAG 59.544 55.000 0.00 0.00 46.50 2.27
165 166 1.834188 CCAATGGTAGGCCGAAAAGT 58.166 50.000 0.00 0.00 37.67 2.66
166 167 1.743394 CCAATGGTAGGCCGAAAAGTC 59.257 52.381 0.00 0.00 37.67 3.01
167 168 1.743394 CAATGGTAGGCCGAAAAGTCC 59.257 52.381 0.00 0.00 37.67 3.85
168 169 0.255033 ATGGTAGGCCGAAAAGTCCC 59.745 55.000 0.00 0.00 37.67 4.46
169 170 0.838987 TGGTAGGCCGAAAAGTCCCT 60.839 55.000 0.00 0.00 37.67 4.20
170 171 0.107800 GGTAGGCCGAAAAGTCCCTC 60.108 60.000 0.00 0.00 0.00 4.30
171 172 0.903236 GTAGGCCGAAAAGTCCCTCT 59.097 55.000 0.00 0.00 0.00 3.69
172 173 1.278413 GTAGGCCGAAAAGTCCCTCTT 59.722 52.381 0.00 0.00 38.10 2.85
173 174 0.325272 AGGCCGAAAAGTCCCTCTTC 59.675 55.000 0.00 0.00 35.02 2.87
174 175 0.036306 GGCCGAAAAGTCCCTCTTCA 59.964 55.000 0.00 0.00 35.02 3.02
175 176 1.443802 GCCGAAAAGTCCCTCTTCAG 58.556 55.000 0.00 0.00 35.02 3.02
176 177 1.443802 CCGAAAAGTCCCTCTTCAGC 58.556 55.000 0.00 0.00 35.02 4.26
177 178 1.443802 CGAAAAGTCCCTCTTCAGCC 58.556 55.000 0.00 0.00 35.02 4.85
178 179 1.270839 CGAAAAGTCCCTCTTCAGCCA 60.271 52.381 0.00 0.00 35.02 4.75
179 180 2.810400 CGAAAAGTCCCTCTTCAGCCAA 60.810 50.000 0.00 0.00 35.02 4.52
180 181 2.278332 AAAGTCCCTCTTCAGCCAAC 57.722 50.000 0.00 0.00 35.02 3.77
181 182 1.140312 AAGTCCCTCTTCAGCCAACA 58.860 50.000 0.00 0.00 0.00 3.33
182 183 0.689623 AGTCCCTCTTCAGCCAACAG 59.310 55.000 0.00 0.00 0.00 3.16
183 184 0.322008 GTCCCTCTTCAGCCAACAGG 60.322 60.000 0.00 0.00 0.00 4.00
184 185 0.473694 TCCCTCTTCAGCCAACAGGA 60.474 55.000 0.00 0.00 0.00 3.86
185 186 0.035630 CCCTCTTCAGCCAACAGGAG 60.036 60.000 0.00 0.00 0.00 3.69
186 187 0.035630 CCTCTTCAGCCAACAGGAGG 60.036 60.000 0.00 0.00 35.16 4.30
192 193 4.329545 GCCAACAGGAGGCCGACA 62.330 66.667 0.00 0.00 46.50 4.35
193 194 2.046892 CCAACAGGAGGCCGACAG 60.047 66.667 0.00 0.00 0.00 3.51
194 195 2.046892 CAACAGGAGGCCGACAGG 60.047 66.667 0.00 0.00 41.62 4.00
195 196 3.322466 AACAGGAGGCCGACAGGG 61.322 66.667 0.00 0.00 38.20 4.45
196 197 4.640690 ACAGGAGGCCGACAGGGT 62.641 66.667 0.00 0.00 38.44 4.34
197 198 4.087892 CAGGAGGCCGACAGGGTG 62.088 72.222 0.00 0.00 38.44 4.61
198 199 4.316823 AGGAGGCCGACAGGGTGA 62.317 66.667 0.00 0.00 38.44 4.02
199 200 3.083997 GGAGGCCGACAGGGTGAT 61.084 66.667 0.00 0.00 38.44 3.06
200 201 1.760875 GGAGGCCGACAGGGTGATA 60.761 63.158 0.00 0.00 38.44 2.15
201 202 1.442148 GAGGCCGACAGGGTGATAC 59.558 63.158 0.00 0.00 38.44 2.24
202 203 1.001760 AGGCCGACAGGGTGATACT 59.998 57.895 0.00 0.00 38.44 2.12
203 204 0.617820 AGGCCGACAGGGTGATACTT 60.618 55.000 0.00 0.00 38.44 2.24
204 205 0.252197 GGCCGACAGGGTGATACTTT 59.748 55.000 0.00 0.00 38.44 2.66
205 206 1.339727 GGCCGACAGGGTGATACTTTT 60.340 52.381 0.00 0.00 38.44 2.27
206 207 1.737793 GCCGACAGGGTGATACTTTTG 59.262 52.381 0.00 0.00 38.44 2.44
207 208 2.614481 GCCGACAGGGTGATACTTTTGA 60.614 50.000 0.00 0.00 38.44 2.69
208 209 3.873910 CCGACAGGGTGATACTTTTGAT 58.126 45.455 0.00 0.00 0.00 2.57
209 210 4.261801 CCGACAGGGTGATACTTTTGATT 58.738 43.478 0.00 0.00 0.00 2.57
210 211 4.700213 CCGACAGGGTGATACTTTTGATTT 59.300 41.667 0.00 0.00 0.00 2.17
211 212 5.183140 CCGACAGGGTGATACTTTTGATTTT 59.817 40.000 0.00 0.00 0.00 1.82
212 213 6.294508 CCGACAGGGTGATACTTTTGATTTTT 60.295 38.462 0.00 0.00 0.00 1.94
213 214 6.801862 CGACAGGGTGATACTTTTGATTTTTC 59.198 38.462 0.00 0.00 0.00 2.29
214 215 7.308589 CGACAGGGTGATACTTTTGATTTTTCT 60.309 37.037 0.00 0.00 0.00 2.52
215 216 7.661040 ACAGGGTGATACTTTTGATTTTTCTG 58.339 34.615 0.00 0.00 0.00 3.02
216 217 6.587608 CAGGGTGATACTTTTGATTTTTCTGC 59.412 38.462 0.00 0.00 0.00 4.26
217 218 6.267471 AGGGTGATACTTTTGATTTTTCTGCA 59.733 34.615 0.00 0.00 0.00 4.41
218 219 7.038799 AGGGTGATACTTTTGATTTTTCTGCAT 60.039 33.333 0.00 0.00 0.00 3.96
219 220 7.603784 GGGTGATACTTTTGATTTTTCTGCATT 59.396 33.333 0.00 0.00 0.00 3.56
220 221 9.638239 GGTGATACTTTTGATTTTTCTGCATTA 57.362 29.630 0.00 0.00 0.00 1.90
222 223 9.859427 TGATACTTTTGATTTTTCTGCATTAGG 57.141 29.630 0.00 0.00 0.00 2.69
223 224 9.305925 GATACTTTTGATTTTTCTGCATTAGGG 57.694 33.333 0.00 0.00 0.00 3.53
224 225 7.066307 ACTTTTGATTTTTCTGCATTAGGGT 57.934 32.000 0.00 0.00 0.00 4.34
225 226 6.930722 ACTTTTGATTTTTCTGCATTAGGGTG 59.069 34.615 0.00 0.00 0.00 4.61
226 227 6.418057 TTTGATTTTTCTGCATTAGGGTGT 57.582 33.333 0.00 0.00 0.00 4.16
227 228 7.531857 TTTGATTTTTCTGCATTAGGGTGTA 57.468 32.000 0.00 0.00 0.00 2.90
228 229 7.716799 TTGATTTTTCTGCATTAGGGTGTAT 57.283 32.000 0.00 0.00 0.00 2.29
229 230 8.815565 TTGATTTTTCTGCATTAGGGTGTATA 57.184 30.769 0.00 0.00 0.00 1.47
230 231 8.450578 TGATTTTTCTGCATTAGGGTGTATAG 57.549 34.615 0.00 0.00 0.00 1.31
231 232 8.052748 TGATTTTTCTGCATTAGGGTGTATAGT 58.947 33.333 0.00 0.00 0.00 2.12
232 233 8.823220 ATTTTTCTGCATTAGGGTGTATAGTT 57.177 30.769 0.00 0.00 0.00 2.24
233 234 8.644374 TTTTTCTGCATTAGGGTGTATAGTTT 57.356 30.769 0.00 0.00 0.00 2.66
234 235 7.859325 TTTCTGCATTAGGGTGTATAGTTTC 57.141 36.000 0.00 0.00 0.00 2.78
235 236 5.925509 TCTGCATTAGGGTGTATAGTTTCC 58.074 41.667 0.00 0.00 0.00 3.13
236 237 4.699637 TGCATTAGGGTGTATAGTTTCCG 58.300 43.478 0.00 0.00 0.00 4.30
237 238 4.406326 TGCATTAGGGTGTATAGTTTCCGA 59.594 41.667 0.00 0.00 0.00 4.55
238 239 5.104859 TGCATTAGGGTGTATAGTTTCCGAA 60.105 40.000 0.00 0.00 0.00 4.30
239 240 5.995897 GCATTAGGGTGTATAGTTTCCGAAT 59.004 40.000 0.00 0.00 0.00 3.34
240 241 6.485648 GCATTAGGGTGTATAGTTTCCGAATT 59.514 38.462 0.00 0.00 0.00 2.17
241 242 7.012989 GCATTAGGGTGTATAGTTTCCGAATTT 59.987 37.037 0.00 0.00 0.00 1.82
242 243 7.852971 TTAGGGTGTATAGTTTCCGAATTTG 57.147 36.000 0.00 0.00 0.00 2.32
243 244 4.638865 AGGGTGTATAGTTTCCGAATTTGC 59.361 41.667 0.00 0.00 0.00 3.68
244 245 4.638865 GGGTGTATAGTTTCCGAATTTGCT 59.361 41.667 0.00 0.00 0.00 3.91
245 246 5.818857 GGGTGTATAGTTTCCGAATTTGCTA 59.181 40.000 0.00 0.00 0.00 3.49
246 247 6.485648 GGGTGTATAGTTTCCGAATTTGCTAT 59.514 38.462 0.00 0.00 0.00 2.97
247 248 7.658575 GGGTGTATAGTTTCCGAATTTGCTATA 59.341 37.037 0.00 0.00 0.00 1.31
248 249 9.048446 GGTGTATAGTTTCCGAATTTGCTATAA 57.952 33.333 0.00 0.00 0.00 0.98
254 255 8.614994 AGTTTCCGAATTTGCTATAAAAATCG 57.385 30.769 1.90 1.90 40.47 3.34
255 256 8.455682 AGTTTCCGAATTTGCTATAAAAATCGA 58.544 29.630 8.32 0.00 42.36 3.59
256 257 9.233232 GTTTCCGAATTTGCTATAAAAATCGAT 57.767 29.630 8.32 0.00 42.36 3.59
257 258 9.445786 TTTCCGAATTTGCTATAAAAATCGATC 57.554 29.630 0.00 0.00 42.36 3.69
258 259 8.148807 TCCGAATTTGCTATAAAAATCGATCA 57.851 30.769 0.00 0.00 42.36 2.92
259 260 8.783093 TCCGAATTTGCTATAAAAATCGATCAT 58.217 29.630 0.00 0.00 42.36 2.45
292 293 2.832672 AAATCGAAAATCTGAGCGCC 57.167 45.000 2.29 0.00 0.00 6.53
293 294 1.017387 AATCGAAAATCTGAGCGCCC 58.983 50.000 2.29 0.00 0.00 6.13
294 295 0.815615 ATCGAAAATCTGAGCGCCCC 60.816 55.000 2.29 0.00 0.00 5.80
295 296 2.472909 CGAAAATCTGAGCGCCCCC 61.473 63.158 2.29 0.00 0.00 5.40
309 310 4.718143 CCCCCTTCTCTCCTCTCC 57.282 66.667 0.00 0.00 0.00 3.71
310 311 1.456705 CCCCCTTCTCTCCTCTCCG 60.457 68.421 0.00 0.00 0.00 4.63
311 312 2.131067 CCCCTTCTCTCCTCTCCGC 61.131 68.421 0.00 0.00 0.00 5.54
312 313 2.485795 CCCTTCTCTCCTCTCCGCG 61.486 68.421 0.00 0.00 0.00 6.46
313 314 1.452289 CCTTCTCTCCTCTCCGCGA 60.452 63.158 8.23 0.00 0.00 5.87
314 315 1.720694 CCTTCTCTCCTCTCCGCGAC 61.721 65.000 8.23 0.00 0.00 5.19
315 316 1.720694 CTTCTCTCCTCTCCGCGACC 61.721 65.000 8.23 0.00 0.00 4.79
316 317 2.124487 CTCTCCTCTCCGCGACCT 60.124 66.667 8.23 0.00 0.00 3.85
317 318 2.438614 TCTCCTCTCCGCGACCTG 60.439 66.667 8.23 0.00 0.00 4.00
318 319 2.752238 CTCCTCTCCGCGACCTGT 60.752 66.667 8.23 0.00 0.00 4.00
319 320 3.057547 CTCCTCTCCGCGACCTGTG 62.058 68.421 8.23 0.00 0.00 3.66
320 321 4.803426 CCTCTCCGCGACCTGTGC 62.803 72.222 8.23 0.00 0.00 4.57
321 322 4.803426 CTCTCCGCGACCTGTGCC 62.803 72.222 8.23 0.00 0.00 5.01
329 330 4.035102 GACCTGTGCCCCCACCTC 62.035 72.222 0.00 0.00 41.35 3.85
337 338 2.689034 CCCCCACCTCCCTCACTC 60.689 72.222 0.00 0.00 0.00 3.51
338 339 2.452114 CCCCACCTCCCTCACTCT 59.548 66.667 0.00 0.00 0.00 3.24
339 340 1.687493 CCCCACCTCCCTCACTCTC 60.687 68.421 0.00 0.00 0.00 3.20
340 341 1.687493 CCCACCTCCCTCACTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
341 342 1.687493 CCACCTCCCTCACTCTCCC 60.687 68.421 0.00 0.00 0.00 4.30
342 343 1.687493 CACCTCCCTCACTCTCCCC 60.687 68.421 0.00 0.00 0.00 4.81
343 344 2.041405 CCTCCCTCACTCTCCCCC 60.041 72.222 0.00 0.00 0.00 5.40
344 345 2.443016 CTCCCTCACTCTCCCCCG 60.443 72.222 0.00 0.00 0.00 5.73
345 346 4.779733 TCCCTCACTCTCCCCCGC 62.780 72.222 0.00 0.00 0.00 6.13
348 349 4.787280 CTCACTCTCCCCCGCCCT 62.787 72.222 0.00 0.00 0.00 5.19
349 350 4.779733 TCACTCTCCCCCGCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
350 351 4.787280 CACTCTCCCCCGCCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
351 352 4.467107 ACTCTCCCCCGCCCTCTC 62.467 72.222 0.00 0.00 0.00 3.20
362 363 3.522731 CCCTCTCCGGCGACTGAG 61.523 72.222 9.30 12.32 42.48 3.35
363 364 4.200283 CCTCTCCGGCGACTGAGC 62.200 72.222 9.30 0.00 41.06 4.26
364 365 3.443925 CTCTCCGGCGACTGAGCA 61.444 66.667 9.30 0.00 41.06 4.26
365 366 2.755876 TCTCCGGCGACTGAGCAT 60.756 61.111 9.30 0.00 41.06 3.79
366 367 2.279120 CTCCGGCGACTGAGCATC 60.279 66.667 9.30 0.00 34.83 3.91
367 368 4.193334 TCCGGCGACTGAGCATCG 62.193 66.667 9.30 0.00 42.55 3.84
373 374 2.951745 GACTGAGCATCGCGTCGG 60.952 66.667 5.77 3.54 38.61 4.79
374 375 3.396911 GACTGAGCATCGCGTCGGA 62.397 63.158 5.77 0.00 38.61 4.55
375 376 2.951745 CTGAGCATCGCGTCGGAC 60.952 66.667 5.77 0.00 38.61 4.79
376 377 4.829518 TGAGCATCGCGTCGGACG 62.830 66.667 25.18 25.18 45.88 4.79
752 753 3.357166 ACGCCTCGTTATTTGCAAAAA 57.643 38.095 17.19 9.09 36.35 1.94
907 3202 2.704572 CCAAGAAGAAGAGCACGGATT 58.295 47.619 0.00 0.00 0.00 3.01
918 4457 1.809207 CACGGATTGCCCATTGACC 59.191 57.895 0.00 0.00 34.14 4.02
953 4495 2.825836 GCCTCATTCCACAGGCGG 60.826 66.667 0.00 0.00 45.80 6.13
954 4496 2.989639 CCTCATTCCACAGGCGGA 59.010 61.111 0.00 0.00 0.00 5.54
1215 4797 2.202756 CCGCCCTGCTCTTCGTAC 60.203 66.667 0.00 0.00 0.00 3.67
1264 4847 3.112709 GCACGCGGTCTGAGTTCC 61.113 66.667 12.47 0.00 0.00 3.62
1299 4917 0.598065 GGTGATGCGCCATTAATCCC 59.402 55.000 4.18 0.86 33.65 3.85
1303 4921 4.025401 GCGCCATTAATCCCCGCG 62.025 66.667 0.00 0.00 45.35 6.46
1308 4926 1.448985 CCATTAATCCCCGCGGTATG 58.551 55.000 26.12 15.68 0.00 2.39
1309 4927 1.002659 CCATTAATCCCCGCGGTATGA 59.997 52.381 26.12 17.73 0.00 2.15
1310 4928 2.355716 CCATTAATCCCCGCGGTATGAT 60.356 50.000 26.12 19.22 0.00 2.45
1311 4929 3.118555 CCATTAATCCCCGCGGTATGATA 60.119 47.826 26.12 9.18 0.00 2.15
1316 4934 3.880047 TCCCCGCGGTATGATAATAAG 57.120 47.619 26.12 3.25 0.00 1.73
1318 4936 3.194116 TCCCCGCGGTATGATAATAAGAC 59.806 47.826 26.12 0.00 0.00 3.01
1319 4937 3.194968 CCCCGCGGTATGATAATAAGACT 59.805 47.826 26.12 0.00 0.00 3.24
1321 4939 5.338365 CCCGCGGTATGATAATAAGACTAC 58.662 45.833 26.12 0.00 0.00 2.73
1340 4958 6.885376 AGACTACTAGAAAGGATGAGAAACGA 59.115 38.462 0.00 0.00 0.00 3.85
1349 4967 0.824109 ATGAGAAACGATGAGCGGGA 59.176 50.000 0.00 0.00 46.49 5.14
1382 5006 4.072131 TGTCCTGCTGTTTGGTTATCTTC 58.928 43.478 0.00 0.00 0.00 2.87
1388 5012 4.764823 TGCTGTTTGGTTATCTTCGGAATT 59.235 37.500 0.00 0.00 0.00 2.17
1391 5015 6.494893 TGTTTGGTTATCTTCGGAATTGAG 57.505 37.500 0.00 0.00 0.00 3.02
1392 5016 5.106317 TGTTTGGTTATCTTCGGAATTGAGC 60.106 40.000 0.00 0.00 0.00 4.26
1394 5018 4.843728 TGGTTATCTTCGGAATTGAGCTT 58.156 39.130 0.00 0.00 0.00 3.74
1395 5019 5.984725 TGGTTATCTTCGGAATTGAGCTTA 58.015 37.500 0.00 0.00 0.00 3.09
1398 5022 3.543680 TCTTCGGAATTGAGCTTAGGG 57.456 47.619 0.00 0.00 0.00 3.53
1399 5023 1.943340 CTTCGGAATTGAGCTTAGGGC 59.057 52.381 0.00 0.00 42.19 5.19
1409 5033 3.478540 GCTTAGGGCTTGTTCGGAT 57.521 52.632 0.00 0.00 38.06 4.18
1410 5034 2.614829 GCTTAGGGCTTGTTCGGATA 57.385 50.000 0.00 0.00 38.06 2.59
1411 5035 3.127425 GCTTAGGGCTTGTTCGGATAT 57.873 47.619 0.00 0.00 38.06 1.63
1412 5036 4.267349 GCTTAGGGCTTGTTCGGATATA 57.733 45.455 0.00 0.00 38.06 0.86
1413 5037 4.833390 GCTTAGGGCTTGTTCGGATATAT 58.167 43.478 0.00 0.00 38.06 0.86
1414 5038 5.246307 GCTTAGGGCTTGTTCGGATATATT 58.754 41.667 0.00 0.00 38.06 1.28
1415 5039 5.351740 GCTTAGGGCTTGTTCGGATATATTC 59.648 44.000 0.00 0.00 38.06 1.75
1416 5040 4.287766 AGGGCTTGTTCGGATATATTCC 57.712 45.455 0.00 0.00 41.59 3.01
1417 5041 3.009143 AGGGCTTGTTCGGATATATTCCC 59.991 47.826 0.00 0.00 42.06 3.97
1418 5042 3.244770 GGGCTTGTTCGGATATATTCCCA 60.245 47.826 0.00 0.00 42.06 4.37
1419 5043 4.567747 GGGCTTGTTCGGATATATTCCCAT 60.568 45.833 0.00 0.00 42.06 4.00
1420 5044 4.636206 GGCTTGTTCGGATATATTCCCATC 59.364 45.833 0.00 0.00 42.06 3.51
1421 5045 4.330074 GCTTGTTCGGATATATTCCCATCG 59.670 45.833 0.00 0.00 42.06 3.84
1422 5046 4.465632 TGTTCGGATATATTCCCATCGG 57.534 45.455 0.00 0.00 42.06 4.18
1423 5047 4.090819 TGTTCGGATATATTCCCATCGGA 58.909 43.478 0.00 0.00 42.06 4.55
1424 5048 4.714802 TGTTCGGATATATTCCCATCGGAT 59.285 41.667 0.00 0.00 42.06 4.18
1425 5049 5.188948 TGTTCGGATATATTCCCATCGGATT 59.811 40.000 0.00 0.00 42.06 3.01
1426 5050 5.531122 TCGGATATATTCCCATCGGATTC 57.469 43.478 0.00 0.00 42.06 2.52
1427 5051 4.959839 TCGGATATATTCCCATCGGATTCA 59.040 41.667 0.00 0.00 42.06 2.57
1428 5052 5.069119 TCGGATATATTCCCATCGGATTCAG 59.931 44.000 0.00 0.00 42.06 3.02
1451 5075 4.519906 TGGAATTCCAGTTCTAATCCCC 57.480 45.455 23.63 0.00 42.01 4.81
1477 5101 0.179000 CTGAAGGGGATTGAGTCGGG 59.821 60.000 0.00 0.00 0.00 5.14
1489 5122 5.820947 GGATTGAGTCGGGTTATACAAACAT 59.179 40.000 0.00 0.00 0.00 2.71
1500 5133 5.297278 GGTTATACAAACATGCCCGTATTCA 59.703 40.000 6.77 0.00 0.00 2.57
1503 5136 4.370364 ACAAACATGCCCGTATTCATTC 57.630 40.909 0.00 0.00 0.00 2.67
1504 5137 3.761218 ACAAACATGCCCGTATTCATTCA 59.239 39.130 0.00 0.00 0.00 2.57
1506 5139 5.592282 ACAAACATGCCCGTATTCATTCATA 59.408 36.000 0.00 0.00 0.00 2.15
1508 5171 3.753272 ACATGCCCGTATTCATTCATAGC 59.247 43.478 0.00 0.00 0.00 2.97
1511 5174 3.181445 TGCCCGTATTCATTCATAGCCTT 60.181 43.478 0.00 0.00 0.00 4.35
1516 5179 4.083643 CGTATTCATTCATAGCCTTGCCAG 60.084 45.833 0.00 0.00 0.00 4.85
1522 5185 1.065926 TCATAGCCTTGCCAGTCAGTG 60.066 52.381 0.00 0.00 0.00 3.66
1532 5195 0.613777 CCAGTCAGTGGTACCCTTCC 59.386 60.000 10.07 0.00 42.17 3.46
1533 5196 1.348064 CAGTCAGTGGTACCCTTCCA 58.652 55.000 10.07 0.00 0.00 3.53
1534 5197 1.909302 CAGTCAGTGGTACCCTTCCAT 59.091 52.381 10.07 0.00 37.30 3.41
1536 5199 1.065418 GTCAGTGGTACCCTTCCATGG 60.065 57.143 10.07 4.97 37.30 3.66
1538 5201 1.633432 CAGTGGTACCCTTCCATGGAA 59.367 52.381 25.53 25.53 37.30 3.53
1539 5202 2.041081 CAGTGGTACCCTTCCATGGAAA 59.959 50.000 26.87 10.50 37.30 3.13
1540 5203 2.041216 AGTGGTACCCTTCCATGGAAAC 59.959 50.000 26.87 20.87 37.30 2.78
1541 5204 2.041216 GTGGTACCCTTCCATGGAAACT 59.959 50.000 26.87 14.52 37.30 2.66
1597 5261 9.313118 CCAAAGAGCCATGGTATTTTATTTTAC 57.687 33.333 14.67 0.00 31.84 2.01
1601 5265 9.474313 AGAGCCATGGTATTTTATTTTACTTCA 57.526 29.630 14.67 0.00 0.00 3.02
1651 5315 4.510038 ACCAAGCTAAAAGTTCAGCATG 57.490 40.909 10.96 9.09 40.36 4.06
1673 5337 5.500234 TGAGCTATTAGGCACAAACAGAAT 58.500 37.500 0.00 0.00 30.61 2.40
1679 5343 3.228188 AGGCACAAACAGAATGGAAGA 57.772 42.857 0.00 0.00 43.62 2.87
1691 5355 4.022589 CAGAATGGAAGACAAAGTGTGCAT 60.023 41.667 0.00 0.00 0.00 3.96
1692 5356 4.586001 AGAATGGAAGACAAAGTGTGCATT 59.414 37.500 0.00 0.00 0.00 3.56
1694 5358 2.361757 TGGAAGACAAAGTGTGCATTGG 59.638 45.455 3.04 0.00 0.00 3.16
1729 5393 1.691196 TTGGTTTCTCCCAGCTTGTG 58.309 50.000 0.00 0.00 35.49 3.33
1788 7717 7.210718 TCAAATCATCAGCTAGGCAAATATG 57.789 36.000 0.00 0.00 0.00 1.78
1854 7786 1.659098 GTCCTGGTGCTTACGATTTCG 59.341 52.381 0.00 0.00 46.33 3.46
1874 7806 9.543018 GATTTCGTTCTTATTTACAACTTCCTG 57.457 33.333 0.00 0.00 0.00 3.86
1875 7807 8.441312 TTTCGTTCTTATTTACAACTTCCTGT 57.559 30.769 0.00 0.00 0.00 4.00
1876 7808 7.416154 TCGTTCTTATTTACAACTTCCTGTG 57.584 36.000 0.00 0.00 0.00 3.66
1877 7809 7.211573 TCGTTCTTATTTACAACTTCCTGTGA 58.788 34.615 0.00 0.00 0.00 3.58
1878 7810 7.384115 TCGTTCTTATTTACAACTTCCTGTGAG 59.616 37.037 0.00 0.00 0.00 3.51
1881 7813 6.874134 TCTTATTTACAACTTCCTGTGAGCTC 59.126 38.462 6.82 6.82 0.00 4.09
1891 7823 3.636679 TCCTGTGAGCTCAGCTTAGTAT 58.363 45.455 18.89 0.00 39.88 2.12
1929 7861 7.905604 TGTGTTGACTTATTAATCTGTCCTG 57.094 36.000 14.34 0.00 0.00 3.86
2006 7938 2.024414 ACAACTTGGTCAAACCTCTGC 58.976 47.619 0.00 0.00 39.58 4.26
2013 7945 1.594331 GTCAAACCTCTGCCGAAGTT 58.406 50.000 0.00 0.00 0.00 2.66
2014 7946 2.549349 GGTCAAACCTCTGCCGAAGTTA 60.549 50.000 0.00 0.00 34.73 2.24
2469 8404 5.237996 GTCAAGAGCATCATTAGCTGCATTA 59.762 40.000 1.02 0.00 43.58 1.90
2499 8434 6.483640 GTCTTTCTCAGTCACAGGTATTTGTT 59.516 38.462 0.00 0.00 0.00 2.83
2565 8500 4.352887 ACGGTGTTTTGTAATGTTTTCCG 58.647 39.130 0.00 0.00 40.00 4.30
2759 8694 7.406553 CCTAATTGAAGCATGCAATGAATTTG 58.593 34.615 21.98 18.17 45.83 2.32
2785 8720 6.144078 TCACGCTATAAGCTGAGTCAATTA 57.856 37.500 0.00 0.00 39.60 1.40
2791 8726 8.240682 CGCTATAAGCTGAGTCAATTATCTAGT 58.759 37.037 11.63 0.00 39.60 2.57
2899 8834 7.837863 TGCTACTATGCAGTTTCCTATATACC 58.162 38.462 0.00 0.00 38.12 2.73
3131 9066 8.017418 AGTGATTTTCCCTAGTTCTAGATCTG 57.983 38.462 12.72 4.12 0.00 2.90
3198 9135 3.780804 TCCTCTTGTCCGAAATTGGAA 57.219 42.857 0.00 0.00 40.44 3.53
3267 9209 9.740239 ATCATGCAAGTATATTTCATGACAAAC 57.260 29.630 17.20 0.00 43.99 2.93
3314 9261 6.648192 ACCAGTCCAAATTATCTTGAGAGAG 58.352 40.000 0.00 0.00 34.85 3.20
3315 9262 6.054295 CCAGTCCAAATTATCTTGAGAGAGG 58.946 44.000 0.00 0.00 34.85 3.69
3321 9268 7.050377 CCAAATTATCTTGAGAGAGGCTTACA 58.950 38.462 0.00 0.00 34.85 2.41
3351 9298 2.286418 CGCTTTCTTGTGACCAAGTGTC 60.286 50.000 2.69 0.00 46.70 3.67
3353 9300 4.127171 GCTTTCTTGTGACCAAGTGTCTA 58.873 43.478 2.69 0.00 46.70 2.59
3363 9310 6.210584 TGTGACCAAGTGTCTATGACATTAGA 59.789 38.462 3.65 0.00 44.63 2.10
3413 9360 4.400251 TCTCCATTTGCTGAATTGGATGAC 59.600 41.667 0.00 0.00 39.68 3.06
3677 9625 3.302365 TTATTTCCTGCAGTTGCTTGC 57.698 42.857 13.81 2.14 44.33 4.01
3693 9641 5.219226 TGCTTGCATGTTTTGAAAAACTG 57.781 34.783 17.08 13.61 46.37 3.16
3783 9731 4.041567 TCTCCTTTGGACAGATTGTAAGCA 59.958 41.667 0.00 0.00 0.00 3.91
3794 9742 4.395854 CAGATTGTAAGCACCTTGTATGCA 59.604 41.667 0.00 0.00 45.92 3.96
3809 9757 0.815213 ATGCATGATGTTCCGTCCCG 60.815 55.000 0.00 0.00 0.00 5.14
3991 9944 5.690409 TCTGAGAATTCACGTGTACTTTCAC 59.310 40.000 16.51 12.50 35.28 3.18
4069 10022 0.810031 CTCGGGTGGTTATGCGGAAG 60.810 60.000 0.00 0.00 0.00 3.46
4094 10047 1.194547 CTTTCGTTATGCAGCACGTGT 59.805 47.619 18.38 0.68 37.66 4.49
4333 10407 6.861065 TCAGAAACCTACAGAACATTGTTC 57.139 37.500 19.64 19.64 32.56 3.18
4429 10505 3.300667 CTGCTGCACGGTCGCTTTC 62.301 63.158 0.00 0.00 0.00 2.62
4488 10564 6.600032 CCCTCTACTATACACTGATTATCGCT 59.400 42.308 0.00 0.00 0.00 4.93
4556 10632 3.436180 GCCAATCTCCCAAGGATCTCATT 60.436 47.826 0.00 0.00 0.00 2.57
4574 10650 5.778241 TCTCATTCAACAACTAGAGGGTGTA 59.222 40.000 0.00 0.00 46.43 2.90
4643 10721 1.271379 TGTAGGGCCTTGCTTCTGTTC 60.271 52.381 13.45 0.00 0.00 3.18
4688 10767 5.391312 ACTGACCCATTCAAGTTTTATGC 57.609 39.130 0.00 0.00 32.21 3.14
4691 10770 2.837591 ACCCATTCAAGTTTTATGCCCC 59.162 45.455 0.00 0.00 0.00 5.80
4693 10772 3.262915 CCCATTCAAGTTTTATGCCCCAA 59.737 43.478 0.00 0.00 0.00 4.12
4736 10816 0.607489 GAGCTGCAGGTTGTGTCCAT 60.607 55.000 21.18 0.00 0.00 3.41
4740 10820 2.746269 CTGCAGGTTGTGTCCATTTTG 58.254 47.619 5.57 0.00 0.00 2.44
4759 10839 1.821332 GGCCCAGCATGCTACTGAC 60.821 63.158 22.19 10.24 37.32 3.51
4778 10858 7.492352 ACTGACACAGTACTTTTTACCATTC 57.508 36.000 2.43 0.00 43.46 2.67
4795 10875 9.816354 TTTACCATTCAAGAAAAAGAGAAAAGG 57.184 29.630 0.00 0.00 0.00 3.11
4820 10912 7.769044 GGATGTTGAACTCTTAGTGCCTATTAA 59.231 37.037 0.00 0.00 0.00 1.40
4881 10976 5.809001 TCTGAACTCACTAGCCATTGATTT 58.191 37.500 0.00 0.00 0.00 2.17
4883 10978 6.716628 TCTGAACTCACTAGCCATTGATTTTT 59.283 34.615 0.00 0.00 0.00 1.94
4918 11013 3.365364 GCTCCAGTTTGCTGACATTGTAC 60.365 47.826 0.00 0.00 45.28 2.90
4931 11026 6.096846 GCTGACATTGTACATTCCCCTTAATT 59.903 38.462 0.00 0.00 0.00 1.40
4946 11041 8.499288 TCCCCTTAATTAAGTGGAAAACAATT 57.501 30.769 22.61 0.00 37.00 2.32
4966 11062 6.435277 ACAATTACTCGAGTTGGTTCCTACTA 59.565 38.462 25.44 0.00 0.00 1.82
4971 11067 3.009916 TCGAGTTGGTTCCTACTACCTCT 59.990 47.826 5.99 0.00 36.60 3.69
4974 11070 3.833070 AGTTGGTTCCTACTACCTCTGTG 59.167 47.826 4.30 0.00 36.60 3.66
4975 11071 3.820195 TGGTTCCTACTACCTCTGTGA 57.180 47.619 0.00 0.00 36.60 3.58
4976 11072 4.122337 TGGTTCCTACTACCTCTGTGAA 57.878 45.455 0.00 0.00 36.60 3.18
4977 11073 3.830755 TGGTTCCTACTACCTCTGTGAAC 59.169 47.826 0.00 0.00 36.60 3.18
4989 11085 8.838365 ACTACCTCTGTGAACTAATATAAGACG 58.162 37.037 0.00 0.00 0.00 4.18
4990 11086 7.642082 ACCTCTGTGAACTAATATAAGACGT 57.358 36.000 0.00 0.00 0.00 4.34
5102 11198 7.838884 AGTTTACAGAGGGAGTACTTCATAAC 58.161 38.462 2.92 0.00 0.00 1.89
5104 11200 5.923733 ACAGAGGGAGTACTTCATAACTG 57.076 43.478 2.92 3.33 0.00 3.16
5115 11211 7.376615 AGTACTTCATAACTGTCACTTACCAC 58.623 38.462 0.00 0.00 0.00 4.16
5133 11229 2.089201 CACAGAATCTTGCTGCCATCA 58.911 47.619 0.00 0.00 36.86 3.07
5141 11237 1.180456 TTGCTGCCATCACCACAAGG 61.180 55.000 0.00 0.00 42.21 3.61
5362 11458 1.376424 AGAACTGGTGATGCTGGCG 60.376 57.895 0.00 0.00 0.00 5.69
5374 11470 1.447838 GCTGGCGAAGATCGGTTCA 60.448 57.895 1.64 0.00 40.84 3.18
5378 11474 0.527817 GGCGAAGATCGGTTCATCGT 60.528 55.000 13.20 0.00 45.02 3.73
5464 11564 4.701765 ACACAGAAGATACAGGCATCATC 58.298 43.478 0.00 0.00 0.00 2.92
5473 11573 1.848388 ACAGGCATCATCATGAAGGGA 59.152 47.619 0.00 0.00 30.57 4.20
5482 11582 3.448301 TCATCATGAAGGGATGTTTTGCC 59.552 43.478 0.00 0.00 42.16 4.52
5483 11583 2.178580 TCATGAAGGGATGTTTTGCCC 58.821 47.619 0.00 0.00 45.04 5.36
5550 11653 7.066163 TGCTTATCTTGGTGATCTTGTGTAATG 59.934 37.037 0.00 0.00 36.65 1.90
5556 11659 3.758554 GGTGATCTTGTGTAATGTTGCCT 59.241 43.478 0.00 0.00 0.00 4.75
5561 11664 3.563808 TCTTGTGTAATGTTGCCTCACAC 59.436 43.478 0.00 0.00 38.46 3.82
5579 11682 4.447724 TCACACGAGAGATAAACAAACAGC 59.552 41.667 0.00 0.00 0.00 4.40
5631 11734 6.919721 TGTAAAGATGAACAAAATAGGTGGC 58.080 36.000 0.00 0.00 0.00 5.01
5652 11756 0.323629 ATCTTTTTCCCGCGTCAGGA 59.676 50.000 4.92 0.95 0.00 3.86
5727 11831 4.201871 TGTTCCTTGTTTGACACAATCGTC 60.202 41.667 0.00 0.00 44.72 4.20
5768 11872 2.409975 TCAACGGCTTGCAACTACTAC 58.590 47.619 0.00 0.00 0.00 2.73
5769 11873 2.036733 TCAACGGCTTGCAACTACTACT 59.963 45.455 0.00 0.00 0.00 2.57
5770 11874 2.806244 CAACGGCTTGCAACTACTACTT 59.194 45.455 0.00 0.00 0.00 2.24
5771 11875 2.685100 ACGGCTTGCAACTACTACTTC 58.315 47.619 0.00 0.00 0.00 3.01
5772 11876 2.000447 CGGCTTGCAACTACTACTTCC 59.000 52.381 0.00 0.00 0.00 3.46
5773 11877 2.353803 CGGCTTGCAACTACTACTTCCT 60.354 50.000 0.00 0.00 0.00 3.36
5774 11878 3.263261 GGCTTGCAACTACTACTTCCTC 58.737 50.000 0.00 0.00 0.00 3.71
5775 11879 3.263261 GCTTGCAACTACTACTTCCTCC 58.737 50.000 0.00 0.00 0.00 4.30
5776 11880 3.512680 CTTGCAACTACTACTTCCTCCG 58.487 50.000 0.00 0.00 0.00 4.63
5777 11881 2.522185 TGCAACTACTACTTCCTCCGT 58.478 47.619 0.00 0.00 0.00 4.69
5778 11882 2.895404 TGCAACTACTACTTCCTCCGTT 59.105 45.455 0.00 0.00 0.00 4.44
5779 11883 3.057033 TGCAACTACTACTTCCTCCGTTC 60.057 47.826 0.00 0.00 0.00 3.95
5780 11884 3.675502 GCAACTACTACTTCCTCCGTTCC 60.676 52.174 0.00 0.00 0.00 3.62
5781 11885 3.446442 ACTACTACTTCCTCCGTTCCA 57.554 47.619 0.00 0.00 0.00 3.53
5782 11886 3.771216 ACTACTACTTCCTCCGTTCCAA 58.229 45.455 0.00 0.00 0.00 3.53
5783 11887 4.154942 ACTACTACTTCCTCCGTTCCAAA 58.845 43.478 0.00 0.00 0.00 3.28
5784 11888 4.590222 ACTACTACTTCCTCCGTTCCAAAA 59.410 41.667 0.00 0.00 0.00 2.44
5785 11889 4.635699 ACTACTTCCTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
5786 11890 5.750352 ACTACTTCCTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
5787 11891 5.731591 ACTACTTCCTCCGTTCCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
5788 11892 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
5789 11893 5.437191 ACTTCCTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
5790 11894 5.186198 ACTTCCTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
5791 11895 5.045869 ACTTCCTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
5792 11896 4.766375 TCCTCCGTTCCAAAATAGATGAC 58.234 43.478 0.00 0.00 0.00 3.06
5793 11897 4.469945 TCCTCCGTTCCAAAATAGATGACT 59.530 41.667 0.00 0.00 0.00 3.41
5794 11898 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5795 11899 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5796 11900 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5797 11901 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5798 11902 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5799 11903 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5800 11904 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5801 11905 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
5802 11906 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
5803 11907 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5804 11908 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
5805 11909 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
5812 11916 9.915629 AGATGACTCAACTTTGTACTAACTTAG 57.084 33.333 0.00 0.00 0.00 2.18
5813 11917 9.694137 GATGACTCAACTTTGTACTAACTTAGT 57.306 33.333 6.68 6.68 42.68 2.24
5888 11993 2.559668 AGAGCACCACAATCATTGGTTG 59.440 45.455 8.12 8.12 45.62 3.77
5897 12002 6.213195 ACCACAATCATTGGTTGGTTATGAAT 59.787 34.615 13.95 0.00 45.62 2.57
5935 12040 3.003689 CGTTGGCATTTATCTGATGGGAC 59.996 47.826 0.00 0.00 0.00 4.46
5940 12045 3.499918 GCATTTATCTGATGGGACGAAGG 59.500 47.826 0.00 0.00 0.00 3.46
6026 12132 0.909610 AGCAGACGAATTCCTCCCCA 60.910 55.000 0.00 0.00 0.00 4.96
6293 13055 1.144936 AGCTAGGTCGGCTCATTGC 59.855 57.895 0.00 0.00 34.70 3.56
6295 13057 0.744414 GCTAGGTCGGCTCATTGCAA 60.744 55.000 0.00 0.00 45.15 4.08
6324 13086 5.182760 GCAGGAGATTATGCCTTTATTCCAG 59.817 44.000 0.00 0.00 36.41 3.86
6325 13087 6.537355 CAGGAGATTATGCCTTTATTCCAGA 58.463 40.000 0.00 0.00 30.41 3.86
6328 13090 5.635120 AGATTATGCCTTTATTCCAGACCC 58.365 41.667 0.00 0.00 0.00 4.46
6339 13101 1.847968 CCAGACCCACCACTCCCTT 60.848 63.158 0.00 0.00 0.00 3.95
6341 13103 1.913762 AGACCCACCACTCCCTTCG 60.914 63.158 0.00 0.00 0.00 3.79
6344 13106 1.221840 CCCACCACTCCCTTCGATG 59.778 63.158 0.00 0.00 0.00 3.84
6345 13107 1.450312 CCACCACTCCCTTCGATGC 60.450 63.158 0.00 0.00 0.00 3.91
6346 13108 1.599047 CACCACTCCCTTCGATGCT 59.401 57.895 0.00 0.00 0.00 3.79
6347 13109 0.824109 CACCACTCCCTTCGATGCTA 59.176 55.000 0.00 0.00 0.00 3.49
6348 13110 1.414181 CACCACTCCCTTCGATGCTAT 59.586 52.381 0.00 0.00 0.00 2.97
6349 13111 2.628178 CACCACTCCCTTCGATGCTATA 59.372 50.000 0.00 0.00 0.00 1.31
6350 13112 3.069586 CACCACTCCCTTCGATGCTATAA 59.930 47.826 0.00 0.00 0.00 0.98
6351 13113 3.904339 ACCACTCCCTTCGATGCTATAAT 59.096 43.478 0.00 0.00 0.00 1.28
6352 13114 5.047306 CACCACTCCCTTCGATGCTATAATA 60.047 44.000 0.00 0.00 0.00 0.98
6353 13115 5.721960 ACCACTCCCTTCGATGCTATAATAT 59.278 40.000 0.00 0.00 0.00 1.28
6354 13116 6.045318 CCACTCCCTTCGATGCTATAATATG 58.955 44.000 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.879759 CGGCTCTACTGTTTTAGAAAATTCATA 58.120 33.333 0.00 0.00 0.00 2.15
35 36 7.148239 CCGGCTCTACTGTTTTAGAAAATTCAT 60.148 37.037 0.00 0.00 0.00 2.57
36 37 6.148811 CCGGCTCTACTGTTTTAGAAAATTCA 59.851 38.462 0.00 0.00 0.00 2.57
37 38 6.148976 ACCGGCTCTACTGTTTTAGAAAATTC 59.851 38.462 0.00 0.00 0.00 2.17
38 39 6.002082 ACCGGCTCTACTGTTTTAGAAAATT 58.998 36.000 0.00 0.00 0.00 1.82
39 40 5.411669 CACCGGCTCTACTGTTTTAGAAAAT 59.588 40.000 0.00 0.00 0.00 1.82
40 41 4.753107 CACCGGCTCTACTGTTTTAGAAAA 59.247 41.667 0.00 0.00 0.00 2.29
41 42 4.202284 ACACCGGCTCTACTGTTTTAGAAA 60.202 41.667 0.00 0.00 0.00 2.52
42 43 3.322828 ACACCGGCTCTACTGTTTTAGAA 59.677 43.478 0.00 0.00 0.00 2.10
43 44 2.895404 ACACCGGCTCTACTGTTTTAGA 59.105 45.455 0.00 0.00 0.00 2.10
44 45 3.314541 ACACCGGCTCTACTGTTTTAG 57.685 47.619 0.00 0.00 0.00 1.85
45 46 3.395639 CAACACCGGCTCTACTGTTTTA 58.604 45.455 0.00 0.00 0.00 1.52
46 47 2.218603 CAACACCGGCTCTACTGTTTT 58.781 47.619 0.00 0.00 0.00 2.43
47 48 1.542547 CCAACACCGGCTCTACTGTTT 60.543 52.381 0.00 0.00 0.00 2.83
48 49 0.034896 CCAACACCGGCTCTACTGTT 59.965 55.000 0.00 0.00 0.00 3.16
49 50 1.671742 CCAACACCGGCTCTACTGT 59.328 57.895 0.00 0.00 0.00 3.55
50 51 4.598257 CCAACACCGGCTCTACTG 57.402 61.111 0.00 0.00 0.00 2.74
60 61 2.359975 CCCTCTTCGGCCAACACC 60.360 66.667 2.24 0.00 0.00 4.16
61 62 1.671379 GTCCCTCTTCGGCCAACAC 60.671 63.158 2.24 0.00 0.00 3.32
62 63 1.827399 GAGTCCCTCTTCGGCCAACA 61.827 60.000 2.24 0.00 0.00 3.33
63 64 1.079057 GAGTCCCTCTTCGGCCAAC 60.079 63.158 2.24 0.00 0.00 3.77
64 65 0.836400 AAGAGTCCCTCTTCGGCCAA 60.836 55.000 2.24 0.00 46.42 4.52
65 66 1.229209 AAGAGTCCCTCTTCGGCCA 60.229 57.895 2.24 0.00 46.42 5.36
66 67 3.715015 AAGAGTCCCTCTTCGGCC 58.285 61.111 0.00 0.00 46.42 6.13
72 73 0.402121 GTTGGCCAAAGAGTCCCTCT 59.598 55.000 22.47 0.00 43.37 3.69
73 74 0.402121 AGTTGGCCAAAGAGTCCCTC 59.598 55.000 22.47 4.06 0.00 4.30
74 75 0.111253 CAGTTGGCCAAAGAGTCCCT 59.889 55.000 22.47 8.35 0.00 4.20
75 76 0.178990 ACAGTTGGCCAAAGAGTCCC 60.179 55.000 22.47 5.74 0.00 4.46
76 77 1.338020 CAACAGTTGGCCAAAGAGTCC 59.662 52.381 22.47 6.57 0.00 3.85
77 78 1.338020 CCAACAGTTGGCCAAAGAGTC 59.662 52.381 22.47 7.42 45.17 3.36
78 79 1.402787 CCAACAGTTGGCCAAAGAGT 58.597 50.000 22.47 16.01 45.17 3.24
88 89 1.269051 GGACTTTTCGGCCAACAGTTG 60.269 52.381 2.24 6.28 0.00 3.16
89 90 1.029681 GGACTTTTCGGCCAACAGTT 58.970 50.000 2.24 0.00 0.00 3.16
90 91 0.182775 AGGACTTTTCGGCCAACAGT 59.817 50.000 2.24 4.99 0.00 3.55
91 92 1.318576 AAGGACTTTTCGGCCAACAG 58.681 50.000 2.24 1.51 0.00 3.16
92 93 1.770294 AAAGGACTTTTCGGCCAACA 58.230 45.000 2.24 0.00 0.00 3.33
93 94 2.863740 CAAAAAGGACTTTTCGGCCAAC 59.136 45.455 10.18 0.00 41.45 3.77
94 95 2.159028 CCAAAAAGGACTTTTCGGCCAA 60.159 45.455 10.18 0.00 41.45 4.52
95 96 1.410882 CCAAAAAGGACTTTTCGGCCA 59.589 47.619 10.18 0.00 41.45 5.36
96 97 1.872237 GCCAAAAAGGACTTTTCGGCC 60.872 52.381 22.71 9.61 41.45 6.13
97 98 1.497991 GCCAAAAAGGACTTTTCGGC 58.502 50.000 19.99 19.99 41.45 5.54
98 99 2.148916 GGCCAAAAAGGACTTTTCGG 57.851 50.000 9.59 9.59 44.70 4.30
106 107 1.456705 AACCGCTGGCCAAAAAGGA 60.457 52.632 18.65 0.00 41.22 3.36
107 108 1.300853 CAACCGCTGGCCAAAAAGG 60.301 57.895 7.01 10.40 41.84 3.11
108 109 1.300853 CCAACCGCTGGCCAAAAAG 60.301 57.895 7.01 0.00 38.76 2.27
109 110 2.818132 CCAACCGCTGGCCAAAAA 59.182 55.556 7.01 0.00 38.76 1.94
121 122 1.228459 AGGGACTTTTCGGCCAACC 60.228 57.895 2.24 0.00 27.25 3.77
122 123 0.250770 AGAGGGACTTTTCGGCCAAC 60.251 55.000 2.24 0.00 41.55 3.77
123 124 0.476771 AAGAGGGACTTTTCGGCCAA 59.523 50.000 2.24 0.00 41.55 4.52
124 125 0.036306 GAAGAGGGACTTTTCGGCCA 59.964 55.000 2.24 0.00 39.71 5.36
125 126 2.855887 GAAGAGGGACTTTTCGGCC 58.144 57.895 0.00 0.00 39.71 6.13
129 130 0.036306 TGGCCGAAGAGGGACTTTTC 59.964 55.000 0.00 0.00 44.82 2.29
130 131 0.476771 TTGGCCGAAGAGGGACTTTT 59.523 50.000 0.00 0.00 41.55 2.27
131 132 0.698818 ATTGGCCGAAGAGGGACTTT 59.301 50.000 0.00 0.00 41.55 2.66
132 133 0.035056 CATTGGCCGAAGAGGGACTT 60.035 55.000 0.00 0.00 41.55 3.01
134 135 1.452108 CCATTGGCCGAAGAGGGAC 60.452 63.158 0.00 0.00 41.48 4.46
135 136 0.619255 TACCATTGGCCGAAGAGGGA 60.619 55.000 1.54 2.88 41.48 4.20
136 137 0.179045 CTACCATTGGCCGAAGAGGG 60.179 60.000 1.54 7.81 41.48 4.30
137 138 0.179045 CCTACCATTGGCCGAAGAGG 60.179 60.000 1.54 1.95 44.97 3.69
138 139 0.815615 GCCTACCATTGGCCGAAGAG 60.816 60.000 1.54 0.00 44.32 2.85
139 140 1.223487 GCCTACCATTGGCCGAAGA 59.777 57.895 1.54 0.00 44.32 2.87
140 141 3.827634 GCCTACCATTGGCCGAAG 58.172 61.111 1.54 0.00 44.32 3.79
146 147 1.743394 GACTTTTCGGCCTACCATTGG 59.257 52.381 0.00 0.00 34.57 3.16
147 148 1.743394 GGACTTTTCGGCCTACCATTG 59.257 52.381 0.00 0.00 34.57 2.82
148 149 1.340697 GGGACTTTTCGGCCTACCATT 60.341 52.381 0.00 0.00 34.57 3.16
149 150 0.255033 GGGACTTTTCGGCCTACCAT 59.745 55.000 0.00 0.00 34.57 3.55
150 151 0.838987 AGGGACTTTTCGGCCTACCA 60.839 55.000 0.00 0.00 27.25 3.25
151 152 0.107800 GAGGGACTTTTCGGCCTACC 60.108 60.000 0.00 0.00 41.55 3.18
152 153 0.903236 AGAGGGACTTTTCGGCCTAC 59.097 55.000 0.00 0.00 41.55 3.18
153 154 1.553704 GAAGAGGGACTTTTCGGCCTA 59.446 52.381 0.00 0.00 39.71 3.93
154 155 0.325272 GAAGAGGGACTTTTCGGCCT 59.675 55.000 0.00 0.00 39.71 5.19
155 156 2.855887 GAAGAGGGACTTTTCGGCC 58.144 57.895 0.00 0.00 39.71 6.13
160 161 2.091885 TGTTGGCTGAAGAGGGACTTTT 60.092 45.455 0.00 0.00 41.55 2.27
161 162 1.494721 TGTTGGCTGAAGAGGGACTTT 59.505 47.619 0.00 0.00 41.55 2.66
162 163 1.072965 CTGTTGGCTGAAGAGGGACTT 59.927 52.381 0.00 0.00 41.55 3.01
163 164 2.727343 CCTGTTGGCTGAAGAGGGACT 61.727 57.143 4.80 0.00 40.77 3.85
164 165 0.322008 CCTGTTGGCTGAAGAGGGAC 60.322 60.000 4.80 0.00 40.77 4.46
165 166 0.473694 TCCTGTTGGCTGAAGAGGGA 60.474 55.000 10.84 0.00 43.99 4.20
166 167 0.035630 CTCCTGTTGGCTGAAGAGGG 60.036 60.000 10.84 1.44 43.99 4.30
167 168 0.035630 CCTCCTGTTGGCTGAAGAGG 60.036 60.000 6.02 6.02 45.00 3.69
168 169 0.676151 GCCTCCTGTTGGCTGAAGAG 60.676 60.000 0.00 0.00 46.38 2.85
169 170 1.376466 GCCTCCTGTTGGCTGAAGA 59.624 57.895 0.00 0.00 46.38 2.87
170 171 3.993535 GCCTCCTGTTGGCTGAAG 58.006 61.111 0.00 0.00 46.38 3.02
176 177 2.046892 CTGTCGGCCTCCTGTTGG 60.047 66.667 0.00 0.00 0.00 3.77
177 178 2.046892 CCTGTCGGCCTCCTGTTG 60.047 66.667 0.00 0.00 0.00 3.33
178 179 3.322466 CCCTGTCGGCCTCCTGTT 61.322 66.667 0.00 0.00 0.00 3.16
179 180 4.640690 ACCCTGTCGGCCTCCTGT 62.641 66.667 0.00 0.00 33.26 4.00
180 181 4.087892 CACCCTGTCGGCCTCCTG 62.088 72.222 0.00 0.00 33.26 3.86
181 182 2.238319 TATCACCCTGTCGGCCTCCT 62.238 60.000 0.00 0.00 33.26 3.69
182 183 1.760875 TATCACCCTGTCGGCCTCC 60.761 63.158 0.00 0.00 33.26 4.30
183 184 1.043673 AGTATCACCCTGTCGGCCTC 61.044 60.000 0.00 0.00 33.26 4.70
184 185 0.617820 AAGTATCACCCTGTCGGCCT 60.618 55.000 0.00 0.00 33.26 5.19
185 186 0.252197 AAAGTATCACCCTGTCGGCC 59.748 55.000 0.00 0.00 33.26 6.13
186 187 1.737793 CAAAAGTATCACCCTGTCGGC 59.262 52.381 0.00 0.00 33.26 5.54
187 188 3.328382 TCAAAAGTATCACCCTGTCGG 57.672 47.619 0.00 0.00 37.81 4.79
188 189 5.880054 AAATCAAAAGTATCACCCTGTCG 57.120 39.130 0.00 0.00 0.00 4.35
189 190 7.809806 CAGAAAAATCAAAAGTATCACCCTGTC 59.190 37.037 0.00 0.00 0.00 3.51
190 191 7.661040 CAGAAAAATCAAAAGTATCACCCTGT 58.339 34.615 0.00 0.00 0.00 4.00
191 192 6.587608 GCAGAAAAATCAAAAGTATCACCCTG 59.412 38.462 0.00 0.00 0.00 4.45
192 193 6.267471 TGCAGAAAAATCAAAAGTATCACCCT 59.733 34.615 0.00 0.00 0.00 4.34
193 194 6.454795 TGCAGAAAAATCAAAAGTATCACCC 58.545 36.000 0.00 0.00 0.00 4.61
194 195 8.538409 AATGCAGAAAAATCAAAAGTATCACC 57.462 30.769 0.00 0.00 0.00 4.02
196 197 9.859427 CCTAATGCAGAAAAATCAAAAGTATCA 57.141 29.630 0.00 0.00 0.00 2.15
197 198 9.305925 CCCTAATGCAGAAAAATCAAAAGTATC 57.694 33.333 0.00 0.00 0.00 2.24
198 199 8.815912 ACCCTAATGCAGAAAAATCAAAAGTAT 58.184 29.630 0.00 0.00 0.00 2.12
199 200 8.087750 CACCCTAATGCAGAAAAATCAAAAGTA 58.912 33.333 0.00 0.00 0.00 2.24
200 201 6.930722 CACCCTAATGCAGAAAAATCAAAAGT 59.069 34.615 0.00 0.00 0.00 2.66
201 202 6.930722 ACACCCTAATGCAGAAAAATCAAAAG 59.069 34.615 0.00 0.00 0.00 2.27
202 203 6.825610 ACACCCTAATGCAGAAAAATCAAAA 58.174 32.000 0.00 0.00 0.00 2.44
203 204 6.418057 ACACCCTAATGCAGAAAAATCAAA 57.582 33.333 0.00 0.00 0.00 2.69
204 205 7.716799 ATACACCCTAATGCAGAAAAATCAA 57.283 32.000 0.00 0.00 0.00 2.57
205 206 8.052748 ACTATACACCCTAATGCAGAAAAATCA 58.947 33.333 0.00 0.00 0.00 2.57
206 207 8.451908 ACTATACACCCTAATGCAGAAAAATC 57.548 34.615 0.00 0.00 0.00 2.17
207 208 8.823220 AACTATACACCCTAATGCAGAAAAAT 57.177 30.769 0.00 0.00 0.00 1.82
208 209 8.644374 AAACTATACACCCTAATGCAGAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
209 210 7.338449 GGAAACTATACACCCTAATGCAGAAAA 59.662 37.037 0.00 0.00 0.00 2.29
210 211 6.826741 GGAAACTATACACCCTAATGCAGAAA 59.173 38.462 0.00 0.00 0.00 2.52
211 212 6.354130 GGAAACTATACACCCTAATGCAGAA 58.646 40.000 0.00 0.00 0.00 3.02
212 213 5.452776 CGGAAACTATACACCCTAATGCAGA 60.453 44.000 0.00 0.00 0.00 4.26
213 214 4.750098 CGGAAACTATACACCCTAATGCAG 59.250 45.833 0.00 0.00 0.00 4.41
214 215 4.406326 TCGGAAACTATACACCCTAATGCA 59.594 41.667 0.00 0.00 0.00 3.96
215 216 4.952460 TCGGAAACTATACACCCTAATGC 58.048 43.478 0.00 0.00 0.00 3.56
216 217 8.342634 CAAATTCGGAAACTATACACCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
217 218 7.012989 GCAAATTCGGAAACTATACACCCTAAT 59.987 37.037 0.00 0.00 0.00 1.73
218 219 6.316890 GCAAATTCGGAAACTATACACCCTAA 59.683 38.462 0.00 0.00 0.00 2.69
219 220 5.818857 GCAAATTCGGAAACTATACACCCTA 59.181 40.000 0.00 0.00 0.00 3.53
220 221 4.638865 GCAAATTCGGAAACTATACACCCT 59.361 41.667 0.00 0.00 0.00 4.34
221 222 4.638865 AGCAAATTCGGAAACTATACACCC 59.361 41.667 0.00 0.00 0.00 4.61
222 223 5.813080 AGCAAATTCGGAAACTATACACC 57.187 39.130 0.00 0.00 0.00 4.16
228 229 9.710979 CGATTTTTATAGCAAATTCGGAAACTA 57.289 29.630 0.00 0.00 36.53 2.24
229 230 8.455682 TCGATTTTTATAGCAAATTCGGAAACT 58.544 29.630 11.40 0.00 38.85 2.66
230 231 8.609478 TCGATTTTTATAGCAAATTCGGAAAC 57.391 30.769 11.40 0.00 38.85 2.78
231 232 9.445786 GATCGATTTTTATAGCAAATTCGGAAA 57.554 29.630 0.00 0.00 38.85 3.13
232 233 8.616942 TGATCGATTTTTATAGCAAATTCGGAA 58.383 29.630 0.00 0.00 38.85 4.30
233 234 8.148807 TGATCGATTTTTATAGCAAATTCGGA 57.851 30.769 0.00 4.31 38.85 4.55
234 235 8.955061 ATGATCGATTTTTATAGCAAATTCGG 57.045 30.769 0.00 0.63 38.85 4.30
271 272 3.501950 GGCGCTCAGATTTTCGATTTTT 58.498 40.909 7.64 0.00 0.00 1.94
272 273 2.159379 GGGCGCTCAGATTTTCGATTTT 60.159 45.455 7.64 0.00 0.00 1.82
273 274 1.401905 GGGCGCTCAGATTTTCGATTT 59.598 47.619 7.64 0.00 0.00 2.17
274 275 1.017387 GGGCGCTCAGATTTTCGATT 58.983 50.000 7.64 0.00 0.00 3.34
275 276 0.815615 GGGGCGCTCAGATTTTCGAT 60.816 55.000 10.74 0.00 0.00 3.59
276 277 1.449601 GGGGCGCTCAGATTTTCGA 60.450 57.895 10.74 0.00 0.00 3.71
277 278 2.472909 GGGGGCGCTCAGATTTTCG 61.473 63.158 10.74 0.00 0.00 3.46
278 279 3.514417 GGGGGCGCTCAGATTTTC 58.486 61.111 10.74 0.00 0.00 2.29
292 293 1.456705 CGGAGAGGAGAGAAGGGGG 60.457 68.421 0.00 0.00 0.00 5.40
293 294 2.131067 GCGGAGAGGAGAGAAGGGG 61.131 68.421 0.00 0.00 0.00 4.79
294 295 2.485795 CGCGGAGAGGAGAGAAGGG 61.486 68.421 0.00 0.00 0.00 3.95
295 296 1.452289 TCGCGGAGAGGAGAGAAGG 60.452 63.158 6.13 0.00 0.00 3.46
296 297 1.720694 GGTCGCGGAGAGGAGAGAAG 61.721 65.000 6.13 0.00 0.00 2.85
297 298 1.749638 GGTCGCGGAGAGGAGAGAA 60.750 63.158 6.13 0.00 0.00 2.87
298 299 2.124653 GGTCGCGGAGAGGAGAGA 60.125 66.667 6.13 0.00 0.00 3.10
299 300 2.124487 AGGTCGCGGAGAGGAGAG 60.124 66.667 6.13 0.00 0.00 3.20
300 301 2.438614 CAGGTCGCGGAGAGGAGA 60.439 66.667 6.13 0.00 0.00 3.71
301 302 2.752238 ACAGGTCGCGGAGAGGAG 60.752 66.667 6.13 0.00 0.00 3.69
302 303 3.062466 CACAGGTCGCGGAGAGGA 61.062 66.667 6.13 0.00 0.00 3.71
303 304 4.803426 GCACAGGTCGCGGAGAGG 62.803 72.222 6.13 0.00 0.00 3.69
304 305 4.803426 GGCACAGGTCGCGGAGAG 62.803 72.222 6.13 0.00 0.00 3.20
312 313 4.035102 GAGGTGGGGGCACAGGTC 62.035 72.222 0.00 0.00 0.00 3.85
320 321 2.689034 GAGTGAGGGAGGTGGGGG 60.689 72.222 0.00 0.00 0.00 5.40
321 322 1.687493 GAGAGTGAGGGAGGTGGGG 60.687 68.421 0.00 0.00 0.00 4.96
322 323 1.687493 GGAGAGTGAGGGAGGTGGG 60.687 68.421 0.00 0.00 0.00 4.61
323 324 1.687493 GGGAGAGTGAGGGAGGTGG 60.687 68.421 0.00 0.00 0.00 4.61
324 325 1.687493 GGGGAGAGTGAGGGAGGTG 60.687 68.421 0.00 0.00 0.00 4.00
325 326 2.781406 GGGGAGAGTGAGGGAGGT 59.219 66.667 0.00 0.00 0.00 3.85
326 327 2.041405 GGGGGAGAGTGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
327 328 2.443016 CGGGGGAGAGTGAGGGAG 60.443 72.222 0.00 0.00 0.00 4.30
328 329 4.779733 GCGGGGGAGAGTGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
331 332 4.787280 AGGGCGGGGGAGAGTGAG 62.787 72.222 0.00 0.00 0.00 3.51
332 333 4.779733 GAGGGCGGGGGAGAGTGA 62.780 72.222 0.00 0.00 0.00 3.41
333 334 4.787280 AGAGGGCGGGGGAGAGTG 62.787 72.222 0.00 0.00 0.00 3.51
334 335 4.467107 GAGAGGGCGGGGGAGAGT 62.467 72.222 0.00 0.00 0.00 3.24
345 346 3.522731 CTCAGTCGCCGGAGAGGG 61.523 72.222 8.65 3.67 41.48 4.30
346 347 4.200283 GCTCAGTCGCCGGAGAGG 62.200 72.222 8.65 4.08 44.97 3.69
347 348 2.676016 GATGCTCAGTCGCCGGAGAG 62.676 65.000 8.65 6.05 35.18 3.20
348 349 2.755876 ATGCTCAGTCGCCGGAGA 60.756 61.111 5.05 3.81 35.18 3.71
349 350 2.279120 GATGCTCAGTCGCCGGAG 60.279 66.667 5.05 0.00 36.16 4.63
350 351 4.193334 CGATGCTCAGTCGCCGGA 62.193 66.667 5.05 0.00 31.85 5.14
356 357 2.951745 CCGACGCGATGCTCAGTC 60.952 66.667 15.93 0.00 0.00 3.51
357 358 3.440415 TCCGACGCGATGCTCAGT 61.440 61.111 15.93 0.00 0.00 3.41
358 359 2.951745 GTCCGACGCGATGCTCAG 60.952 66.667 15.93 0.00 0.00 3.35
359 360 4.829518 CGTCCGACGCGATGCTCA 62.830 66.667 15.93 0.00 33.65 4.26
717 718 1.227556 GCGTATCCTGCGGTGGAAT 60.228 57.895 0.00 0.00 39.85 3.01
718 719 2.185867 GCGTATCCTGCGGTGGAA 59.814 61.111 0.00 0.00 39.85 3.53
719 720 3.845259 GGCGTATCCTGCGGTGGA 61.845 66.667 0.00 0.00 40.82 4.02
720 721 3.849951 AGGCGTATCCTGCGGTGG 61.850 66.667 0.00 0.00 45.54 4.61
761 762 9.226606 TGTTTCGAAATAATCAATAGTCAAGGT 57.773 29.630 14.69 0.00 0.00 3.50
790 791 2.492881 TCGTTCCGCCTATTTGTACAGA 59.507 45.455 0.00 0.00 0.00 3.41
907 3202 1.303561 GAGCAGTGGTCAATGGGCA 60.304 57.895 17.32 0.00 0.00 5.36
909 3204 2.401766 GCGAGCAGTGGTCAATGGG 61.402 63.158 21.46 6.48 0.00 4.00
910 3205 1.364626 GAGCGAGCAGTGGTCAATGG 61.365 60.000 21.46 6.84 34.12 3.16
951 4493 0.464554 GGATTCCCTCTTGGCTTCCG 60.465 60.000 0.00 0.00 0.00 4.30
963 4505 0.625849 TTGCTTGGAGGAGGATTCCC 59.374 55.000 0.00 0.00 45.24 3.97
965 4507 1.683319 GGGTTGCTTGGAGGAGGATTC 60.683 57.143 0.00 0.00 0.00 2.52
1264 4847 3.641437 TCACCATCCGAAAGCAAAAAG 57.359 42.857 0.00 0.00 0.00 2.27
1294 4912 4.468510 TCTTATTATCATACCGCGGGGATT 59.531 41.667 31.76 16.29 36.97 3.01
1299 4917 6.192234 AGTAGTCTTATTATCATACCGCGG 57.808 41.667 26.86 26.86 0.00 6.46
1316 4934 7.086230 TCGTTTCTCATCCTTTCTAGTAGTC 57.914 40.000 0.00 0.00 0.00 2.59
1318 4936 7.708051 TCATCGTTTCTCATCCTTTCTAGTAG 58.292 38.462 0.00 0.00 0.00 2.57
1319 4937 7.640597 TCATCGTTTCTCATCCTTTCTAGTA 57.359 36.000 0.00 0.00 0.00 1.82
1321 4939 5.461737 GCTCATCGTTTCTCATCCTTTCTAG 59.538 44.000 0.00 0.00 0.00 2.43
1338 4956 0.531532 AAGCTCAATCCCGCTCATCG 60.532 55.000 0.00 0.00 34.96 3.84
1340 4958 1.211457 AGAAAGCTCAATCCCGCTCAT 59.789 47.619 0.00 0.00 34.96 2.90
1349 4967 2.224719 ACAGCAGGACAGAAAGCTCAAT 60.225 45.455 0.00 0.00 34.61 2.57
1391 5015 2.614829 TATCCGAACAAGCCCTAAGC 57.385 50.000 0.00 0.00 44.25 3.09
1392 5016 5.875359 GGAATATATCCGAACAAGCCCTAAG 59.125 44.000 0.00 0.00 38.79 2.18
1394 5018 5.416271 GGAATATATCCGAACAAGCCCTA 57.584 43.478 0.00 0.00 38.79 3.53
1395 5019 4.287766 GGAATATATCCGAACAAGCCCT 57.712 45.455 0.00 0.00 38.79 5.19
1414 5038 7.901163 GGAATTCCAACTGAATCCGATGGGA 62.901 48.000 20.04 0.00 42.97 4.37
1415 5039 2.418368 TTCCAACTGAATCCGATGGG 57.582 50.000 1.57 0.00 0.00 4.00
1416 5040 3.316308 GGAATTCCAACTGAATCCGATGG 59.684 47.826 20.04 0.00 42.97 3.51
1417 5041 3.947196 TGGAATTCCAACTGAATCCGATG 59.053 43.478 25.13 0.00 42.97 3.84
1418 5042 4.202441 CTGGAATTCCAACTGAATCCGAT 58.798 43.478 26.87 0.00 46.97 4.18
1419 5043 3.009033 ACTGGAATTCCAACTGAATCCGA 59.991 43.478 26.87 0.71 46.97 4.55
1420 5044 3.347216 ACTGGAATTCCAACTGAATCCG 58.653 45.455 26.87 14.57 46.97 4.18
1421 5045 5.012893 AGAACTGGAATTCCAACTGAATCC 58.987 41.667 26.87 10.78 46.97 3.01
1422 5046 7.687941 TTAGAACTGGAATTCCAACTGAATC 57.312 36.000 26.87 17.42 46.97 2.52
1423 5047 7.340487 GGATTAGAACTGGAATTCCAACTGAAT 59.660 37.037 26.87 20.29 46.97 2.57
1424 5048 6.659242 GGATTAGAACTGGAATTCCAACTGAA 59.341 38.462 26.87 17.01 46.97 3.02
1425 5049 6.180472 GGATTAGAACTGGAATTCCAACTGA 58.820 40.000 26.87 20.74 46.97 3.41
1426 5050 5.358160 GGGATTAGAACTGGAATTCCAACTG 59.642 44.000 26.87 18.00 46.97 3.16
1427 5051 5.510430 GGGATTAGAACTGGAATTCCAACT 58.490 41.667 26.87 24.46 46.97 3.16
1428 5052 4.645136 GGGGATTAGAACTGGAATTCCAAC 59.355 45.833 26.87 19.70 46.97 3.77
1444 5068 1.511613 CTTCAGGCTGGAGGGGATTA 58.488 55.000 15.47 0.00 0.00 1.75
1451 5075 0.106819 CAATCCCCTTCAGGCTGGAG 60.107 60.000 16.33 16.33 30.66 3.86
1477 5101 6.366315 TGAATACGGGCATGTTTGTATAAC 57.634 37.500 0.00 0.00 0.00 1.89
1489 5122 2.371841 AGGCTATGAATGAATACGGGCA 59.628 45.455 0.00 0.00 0.00 5.36
1500 5133 2.240667 ACTGACTGGCAAGGCTATGAAT 59.759 45.455 0.00 0.00 29.93 2.57
1503 5136 1.376543 CACTGACTGGCAAGGCTATG 58.623 55.000 0.00 0.00 29.93 2.23
1504 5137 0.254178 CCACTGACTGGCAAGGCTAT 59.746 55.000 0.00 0.00 31.36 2.97
1506 5139 1.127567 TACCACTGACTGGCAAGGCT 61.128 55.000 0.00 0.00 45.32 4.58
1508 5171 0.321653 GGTACCACTGACTGGCAAGG 60.322 60.000 7.15 0.38 45.32 3.61
1526 5189 5.693769 TTCTAGTAGTTTCCATGGAAGGG 57.306 43.478 25.69 12.38 40.85 3.95
1596 5260 5.970317 TGCTGTGAATGAATGAATGAAGT 57.030 34.783 0.00 0.00 0.00 3.01
1597 5261 5.288712 GCTTGCTGTGAATGAATGAATGAAG 59.711 40.000 0.00 0.00 0.00 3.02
1598 5262 5.047590 AGCTTGCTGTGAATGAATGAATGAA 60.048 36.000 0.00 0.00 0.00 2.57
1599 5263 4.461431 AGCTTGCTGTGAATGAATGAATGA 59.539 37.500 0.00 0.00 0.00 2.57
1600 5264 4.744570 AGCTTGCTGTGAATGAATGAATG 58.255 39.130 0.00 0.00 0.00 2.67
1601 5265 4.438336 CGAGCTTGCTGTGAATGAATGAAT 60.438 41.667 0.00 0.00 0.00 2.57
1602 5266 3.120095 CGAGCTTGCTGTGAATGAATGAA 60.120 43.478 0.00 0.00 0.00 2.57
1603 5267 2.417586 CGAGCTTGCTGTGAATGAATGA 59.582 45.455 0.00 0.00 0.00 2.57
1604 5268 2.161012 ACGAGCTTGCTGTGAATGAATG 59.839 45.455 0.00 0.00 0.00 2.67
1605 5269 2.430465 ACGAGCTTGCTGTGAATGAAT 58.570 42.857 0.00 0.00 0.00 2.57
1606 5270 1.882912 ACGAGCTTGCTGTGAATGAA 58.117 45.000 0.00 0.00 0.00 2.57
1607 5271 1.882912 AACGAGCTTGCTGTGAATGA 58.117 45.000 0.00 0.00 0.00 2.57
1608 5272 2.031769 TCAAACGAGCTTGCTGTGAATG 60.032 45.455 0.00 1.20 0.00 2.67
1609 5273 2.221169 TCAAACGAGCTTGCTGTGAAT 58.779 42.857 0.00 0.00 0.00 2.57
1651 5315 5.220931 CCATTCTGTTTGTGCCTAATAGCTC 60.221 44.000 0.00 0.00 0.00 4.09
1673 5337 2.361757 CCAATGCACACTTTGTCTTCCA 59.638 45.455 0.00 0.00 30.83 3.53
1691 5355 3.256383 CCAATGATCTTGTTGAGCACCAA 59.744 43.478 0.00 0.00 44.39 3.67
1692 5356 2.821378 CCAATGATCTTGTTGAGCACCA 59.179 45.455 0.00 0.00 44.39 4.17
1694 5358 4.510038 AACCAATGATCTTGTTGAGCAC 57.490 40.909 0.00 0.00 44.39 4.40
1702 5366 3.129988 GCTGGGAGAAACCAATGATCTTG 59.870 47.826 0.00 0.00 40.68 3.02
1703 5367 3.011032 AGCTGGGAGAAACCAATGATCTT 59.989 43.478 0.00 0.00 40.68 2.40
1788 7717 4.395854 TCAATGTCCAACATCACACATAGC 59.604 41.667 0.00 0.00 37.97 2.97
1790 7719 5.589855 GGATCAATGTCCAACATCACACATA 59.410 40.000 0.00 0.00 37.97 2.29
1793 7722 4.012374 AGGATCAATGTCCAACATCACAC 58.988 43.478 0.00 0.00 37.97 3.82
1834 7766 1.659098 CGAAATCGTAAGCACCAGGAC 59.341 52.381 0.00 0.00 37.18 3.85
1854 7786 7.173390 AGCTCACAGGAAGTTGTAAATAAGAAC 59.827 37.037 0.00 0.00 0.00 3.01
1860 7792 4.973168 TGAGCTCACAGGAAGTTGTAAAT 58.027 39.130 13.74 0.00 0.00 1.40
1874 7806 3.798548 GCCTGATACTAAGCTGAGCTCAC 60.799 52.174 13.74 10.17 38.25 3.51
1875 7807 2.363680 GCCTGATACTAAGCTGAGCTCA 59.636 50.000 17.19 17.19 38.25 4.26
1876 7808 2.606795 CGCCTGATACTAAGCTGAGCTC 60.607 54.545 7.72 6.82 38.25 4.09
1877 7809 1.339610 CGCCTGATACTAAGCTGAGCT 59.660 52.381 0.00 0.00 42.56 4.09
1878 7810 1.777101 CGCCTGATACTAAGCTGAGC 58.223 55.000 0.00 0.00 0.00 4.26
1881 7813 0.104855 TGGCGCCTGATACTAAGCTG 59.895 55.000 29.70 0.00 0.00 4.24
1891 7823 2.591429 CACAAGTGTGGCGCCTGA 60.591 61.111 29.70 11.36 42.10 3.86
1940 7872 5.068198 TCCGGTCATTGAGGTACAATAGTAC 59.932 44.000 0.00 0.00 46.01 2.73
1951 7883 1.137086 AGATCGTTCCGGTCATTGAGG 59.863 52.381 0.00 0.00 39.71 3.86
1958 7890 0.248949 GCAGGTAGATCGTTCCGGTC 60.249 60.000 0.00 0.00 37.24 4.79
2002 7934 4.607293 ATGCATCTATAACTTCGGCAGA 57.393 40.909 0.00 0.00 32.84 4.26
2006 7938 5.237127 TGCAGAAATGCATCTATAACTTCGG 59.763 40.000 0.00 0.08 40.23 4.30
2044 7979 6.696583 TGTTTGTGCTAATGTGAAGTCAATTG 59.303 34.615 0.00 0.00 0.00 2.32
2265 8200 3.746045 ACTTTTACAGTTGAGGCGAGA 57.254 42.857 0.00 0.00 27.32 4.04
2469 8404 4.141390 ACCTGTGACTGAGAAAGACCAAAT 60.141 41.667 0.00 0.00 0.00 2.32
2499 8434 2.418368 AGTGGTCAAGTGAAGCACAA 57.582 45.000 8.01 0.00 45.27 3.33
2573 8508 5.942236 TCATTCAGCTAAAGCAGAAAGACAT 59.058 36.000 12.89 0.00 46.80 3.06
2635 8570 9.685828 CGGAAAACCTGAAGATAACAAAAATTA 57.314 29.630 0.00 0.00 0.00 1.40
2674 8609 1.361668 CGCCCATCGACTTGAACAGG 61.362 60.000 0.00 0.00 41.67 4.00
2785 8720 5.998363 GGTTCCAACTTCTTTGTCACTAGAT 59.002 40.000 0.00 0.00 32.71 1.98
2791 8726 3.945285 GACTGGTTCCAACTTCTTTGTCA 59.055 43.478 0.00 0.00 32.71 3.58
3160 9096 7.550906 ACAAGAGGAAGTACTAATTTCTCATGC 59.449 37.037 8.89 0.00 0.00 4.06
3267 9209 5.238650 GTCACCAGAAAATTGTATATCCCGG 59.761 44.000 0.00 0.00 0.00 5.73
3301 9248 9.520515 AAAAATTGTAAGCCTCTCTCAAGATAA 57.479 29.630 0.00 0.00 0.00 1.75
3351 9298 8.970859 AGACCAGGAAAAATCTAATGTCATAG 57.029 34.615 0.00 0.00 0.00 2.23
3353 9300 8.526147 CAAAGACCAGGAAAAATCTAATGTCAT 58.474 33.333 0.00 0.00 0.00 3.06
3363 9310 5.294734 ACATTGCAAAGACCAGGAAAAAT 57.705 34.783 8.96 0.00 0.00 1.82
3491 9438 6.109156 TGATAAACATCATACGGCCTACAT 57.891 37.500 0.00 0.00 0.00 2.29
3693 9641 5.718649 TGAAAGTGATATAAGCGTCTTGC 57.281 39.130 2.86 0.00 46.98 4.01
3695 9643 6.349300 ACCATGAAAGTGATATAAGCGTCTT 58.651 36.000 0.00 0.00 0.00 3.01
3783 9731 2.945008 CGGAACATCATGCATACAAGGT 59.055 45.455 0.00 0.00 0.00 3.50
3809 9757 4.609691 TTTCGTCCGAATTTTATCCAGC 57.390 40.909 2.62 0.00 33.79 4.85
3874 9822 7.849804 TCAAAGCTTCGCTAAATTCTAGATT 57.150 32.000 0.00 0.00 38.25 2.40
3877 9829 9.643652 CTAAATCAAAGCTTCGCTAAATTCTAG 57.356 33.333 0.00 0.00 38.25 2.43
3903 9855 6.345920 TCTTTCTTTTTCTCGACAGTCAAC 57.654 37.500 0.41 0.00 0.00 3.18
3905 9857 8.657074 TTTATCTTTCTTTTTCTCGACAGTCA 57.343 30.769 0.41 0.00 0.00 3.41
3991 9944 6.696583 TCAACATTTGTTAATCTGTGTTGCAG 59.303 34.615 15.81 0.00 43.52 4.41
4069 10022 1.401552 TGCTGCATAACGAAAGATGGC 59.598 47.619 0.00 0.00 0.00 4.40
4094 10047 6.998673 GCCTTCTATTTCCCTATTAAAGAGCA 59.001 38.462 0.00 0.00 0.00 4.26
4333 10407 4.705023 ACATTTTCCCATCTTAACCTTCCG 59.295 41.667 0.00 0.00 0.00 4.30
4429 10505 8.553459 TCCTAAAGCTCAGAAAGAAGTTATTG 57.447 34.615 0.00 0.00 0.00 1.90
4488 10564 1.608055 CCATTCAGACAACCTGCACA 58.392 50.000 0.00 0.00 42.62 4.57
4556 10632 6.629515 GCATGTATACACCCTCTAGTTGTTGA 60.630 42.308 7.96 0.00 0.00 3.18
4574 10650 7.275183 TGCTAGAACTTACATCTTGCATGTAT 58.725 34.615 8.24 0.00 45.91 2.29
4643 10721 9.755064 CAGTAGGGATATAAAATTAAAATCGCG 57.245 33.333 0.00 0.00 35.40 5.87
4688 10767 5.303971 CAGAAGTATAGCAGAGAATTGGGG 58.696 45.833 0.00 0.00 0.00 4.96
4717 10796 0.607489 ATGGACACAACCTGCAGCTC 60.607 55.000 8.66 0.00 0.00 4.09
4736 10816 1.078166 TAGCATGCTGGGCCCAAAA 59.922 52.632 30.42 17.70 0.00 2.44
4740 10820 2.517875 CAGTAGCATGCTGGGCCC 60.518 66.667 30.42 17.59 45.67 5.80
4759 10839 9.796120 TTTTCTTGAATGGTAAAAAGTACTGTG 57.204 29.630 0.00 0.00 0.00 3.66
4778 10858 8.811378 GTTCAACATCCTTTTCTCTTTTTCTTG 58.189 33.333 0.00 0.00 0.00 3.02
4786 10866 7.659390 CACTAAGAGTTCAACATCCTTTTCTCT 59.341 37.037 0.00 0.00 33.33 3.10
4820 10912 5.701224 TCCCAAAACTACAATGAGAAGGTT 58.299 37.500 0.00 0.00 0.00 3.50
4881 10976 7.362920 GCAAACTGGAGCAGGATAATAGAAAAA 60.363 37.037 0.00 0.00 35.51 1.94
4883 10978 5.590259 GCAAACTGGAGCAGGATAATAGAAA 59.410 40.000 0.00 0.00 35.51 2.52
4885 10980 4.410228 AGCAAACTGGAGCAGGATAATAGA 59.590 41.667 0.00 0.00 35.51 1.98
4886 10981 4.514441 CAGCAAACTGGAGCAGGATAATAG 59.486 45.833 0.00 0.00 40.48 1.73
4931 11026 7.041644 CCAACTCGAGTAATTGTTTTCCACTTA 60.042 37.037 20.39 0.00 0.00 2.24
4946 11041 4.018960 AGGTAGTAGGAACCAACTCGAGTA 60.019 45.833 20.39 0.00 39.64 2.59
4966 11062 7.642082 ACGTCTTATATTAGTTCACAGAGGT 57.358 36.000 0.00 0.00 0.00 3.85
5064 11160 9.584008 TCCCTCTGTAAACTAATATAAGACGAT 57.416 33.333 0.00 0.00 0.00 3.73
5065 11161 8.985315 TCCCTCTGTAAACTAATATAAGACGA 57.015 34.615 0.00 0.00 0.00 4.20
5066 11162 8.848182 ACTCCCTCTGTAAACTAATATAAGACG 58.152 37.037 0.00 0.00 0.00 4.18
5078 11174 7.760340 CAGTTATGAAGTACTCCCTCTGTAAAC 59.240 40.741 0.00 0.00 0.00 2.01
5079 11175 7.453752 ACAGTTATGAAGTACTCCCTCTGTAAA 59.546 37.037 0.00 0.00 32.00 2.01
5080 11176 6.952358 ACAGTTATGAAGTACTCCCTCTGTAA 59.048 38.462 0.00 0.00 32.00 2.41
5081 11177 6.491383 ACAGTTATGAAGTACTCCCTCTGTA 58.509 40.000 0.00 0.00 32.00 2.74
5084 11180 5.419471 GTGACAGTTATGAAGTACTCCCTCT 59.581 44.000 0.00 0.00 0.00 3.69
5097 11193 7.099764 AGATTCTGTGGTAAGTGACAGTTATG 58.900 38.462 6.03 0.00 40.48 1.90
5102 11198 4.153117 GCAAGATTCTGTGGTAAGTGACAG 59.847 45.833 0.00 0.00 40.89 3.51
5104 11200 4.153117 CAGCAAGATTCTGTGGTAAGTGAC 59.847 45.833 0.00 0.00 0.00 3.67
5115 11211 1.404391 GGTGATGGCAGCAAGATTCTG 59.596 52.381 7.17 0.00 42.00 3.02
5141 11237 4.024387 TGACTGGCATCAAGTAAAAACGAC 60.024 41.667 0.00 0.00 0.00 4.34
5142 11238 4.130857 TGACTGGCATCAAGTAAAAACGA 58.869 39.130 0.00 0.00 0.00 3.85
5362 11458 1.846782 CGACACGATGAACCGATCTTC 59.153 52.381 0.00 0.00 0.00 2.87
5374 11470 3.850122 TGACTGAATTCTCGACACGAT 57.150 42.857 7.05 0.00 34.61 3.73
5378 11474 5.360999 AGACCATATGACTGAATTCTCGACA 59.639 40.000 3.65 5.16 0.00 4.35
5464 11564 1.135024 CGGGCAAAACATCCCTTCATG 60.135 52.381 0.00 0.00 40.41 3.07
5482 11582 1.135689 CAAAACTCATTTCGCCCTCGG 60.136 52.381 0.00 0.00 36.13 4.63
5483 11583 1.729149 GCAAAACTCATTTCGCCCTCG 60.729 52.381 0.00 0.00 0.00 4.63
5529 11632 6.349611 GCAACATTACACAAGATCACCAAGAT 60.350 38.462 0.00 0.00 40.48 2.40
5550 11653 2.941453 TATCTCTCGTGTGAGGCAAC 57.059 50.000 0.00 0.00 42.79 4.17
5556 11659 4.447724 GCTGTTTGTTTATCTCTCGTGTGA 59.552 41.667 0.00 0.00 0.00 3.58
5561 11664 3.673338 TGTCGCTGTTTGTTTATCTCTCG 59.327 43.478 0.00 0.00 0.00 4.04
5628 11731 2.395360 CGCGGGAAAAAGATCGCCA 61.395 57.895 0.00 0.00 44.56 5.69
5631 11734 0.370273 CTGACGCGGGAAAAAGATCG 59.630 55.000 12.47 0.00 0.00 3.69
5652 11756 3.567164 CACCAGAGATCAACTGCTGTTTT 59.433 43.478 6.20 0.00 33.52 2.43
5768 11872 5.294552 GTCATCTATTTTGGAACGGAGGAAG 59.705 44.000 0.00 0.00 0.00 3.46
5769 11873 5.045869 AGTCATCTATTTTGGAACGGAGGAA 60.046 40.000 0.00 0.00 0.00 3.36
5770 11874 4.469945 AGTCATCTATTTTGGAACGGAGGA 59.530 41.667 0.00 0.00 0.00 3.71
5771 11875 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5772 11876 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5773 11877 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5774 11878 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5775 11879 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5776 11880 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
5777 11881 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5778 11882 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
5779 11883 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
5786 11890 9.915629 CTAAGTTAGTACAAAGTTGAGTCATCT 57.084 33.333 1.40 0.00 0.00 2.90
5787 11891 9.694137 ACTAAGTTAGTACAAAGTTGAGTCATC 57.306 33.333 14.00 0.00 37.23 2.92
5814 11918 9.659135 TCAGGAAATGAATAATCCCACAATAAT 57.341 29.630 0.00 0.00 34.02 1.28
5824 11928 6.512415 CGCTGTCCTTCAGGAAATGAATAATC 60.512 42.308 0.00 0.00 46.71 1.75
5886 11991 4.764823 GGTGTGTCCAAGATTCATAACCAA 59.235 41.667 0.00 0.00 35.97 3.67
5888 11993 4.396166 CAGGTGTGTCCAAGATTCATAACC 59.604 45.833 0.00 0.00 39.02 2.85
5897 12002 1.978455 AACGCCAGGTGTGTCCAAGA 61.978 55.000 6.36 0.00 36.45 3.02
5935 12040 3.855689 AAGTCCAATTTGATGCCTTCG 57.144 42.857 0.00 0.00 0.00 3.79
5940 12045 3.916761 TCTGCAAAGTCCAATTTGATGC 58.083 40.909 3.74 1.85 41.71 3.91
5999 12105 2.866762 GGAATTCGTCTGCTGTACATCC 59.133 50.000 0.00 0.00 0.00 3.51
6026 12132 2.058798 CGCACGTAACAGAGACACAAT 58.941 47.619 0.00 0.00 0.00 2.71
6059 12819 1.980765 TGGAAACCAGCTGATCTCACT 59.019 47.619 17.39 0.00 0.00 3.41
6119 12880 5.185828 TGCAGCTAATCTCACAGTTTCTCTA 59.814 40.000 0.00 0.00 0.00 2.43
6124 12885 5.972107 AAATGCAGCTAATCTCACAGTTT 57.028 34.783 0.00 0.00 0.00 2.66
6128 12889 6.432162 AGAAAGAAAATGCAGCTAATCTCACA 59.568 34.615 0.00 0.00 0.00 3.58
6136 12897 6.655078 AGGAAAAGAAAGAAAATGCAGCTA 57.345 33.333 0.00 0.00 0.00 3.32
6209 12971 3.487202 CCACGGTCGGCGTTCATG 61.487 66.667 6.85 1.79 0.00 3.07
6295 13057 7.666063 ATAAAGGCATAATCTCCTGCTTTTT 57.334 32.000 9.39 6.43 42.72 1.94
6300 13062 5.072741 TGGAATAAAGGCATAATCTCCTGC 58.927 41.667 0.00 0.00 37.66 4.85
6301 13063 6.429385 GTCTGGAATAAAGGCATAATCTCCTG 59.571 42.308 0.00 0.00 32.00 3.86
6302 13064 6.466470 GGTCTGGAATAAAGGCATAATCTCCT 60.466 42.308 0.00 0.00 0.00 3.69
6303 13065 5.707764 GGTCTGGAATAAAGGCATAATCTCC 59.292 44.000 0.00 0.00 0.00 3.71
6311 13073 1.005450 GGTGGGTCTGGAATAAAGGCA 59.995 52.381 0.00 0.00 0.00 4.75
6314 13076 3.610911 GAGTGGTGGGTCTGGAATAAAG 58.389 50.000 0.00 0.00 0.00 1.85
6324 13086 1.265454 ATCGAAGGGAGTGGTGGGTC 61.265 60.000 0.00 0.00 0.00 4.46
6325 13087 1.229529 ATCGAAGGGAGTGGTGGGT 60.230 57.895 0.00 0.00 0.00 4.51
6328 13090 0.824109 TAGCATCGAAGGGAGTGGTG 59.176 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.