Multiple sequence alignment - TraesCS5D01G395900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G395900 chr5D 100.000 2534 0 0 1 2534 463404630 463402097 0.000000e+00 4680.0
1 TraesCS5D01G395900 chr5D 88.921 686 61 11 860 1539 463375346 463374670 0.000000e+00 832.0
2 TraesCS5D01G395900 chr5D 91.333 450 34 3 1091 1539 463357569 463357124 5.990000e-171 610.0
3 TraesCS5D01G395900 chr5B 87.879 1947 157 34 611 2534 570175873 570173983 0.000000e+00 2215.0
4 TraesCS5D01G395900 chr5B 88.399 681 61 13 864 1539 570152681 570152014 0.000000e+00 804.0
5 TraesCS5D01G395900 chr5B 86.047 258 28 5 16 271 616159668 616159919 1.160000e-68 270.0
6 TraesCS5D01G395900 chr5A 91.537 1217 72 18 549 1741 583628220 583627011 0.000000e+00 1648.0
7 TraesCS5D01G395900 chr5A 90.962 686 50 11 860 1539 583615746 583615067 0.000000e+00 913.0
8 TraesCS5D01G395900 chr5A 88.559 708 65 8 837 1539 583608715 583608019 0.000000e+00 845.0
9 TraesCS5D01G395900 chrUn 88.399 681 61 13 864 1539 295600362 295599695 0.000000e+00 804.0
10 TraesCS5D01G395900 chrUn 88.399 681 61 14 864 1539 310497148 310497815 0.000000e+00 804.0
11 TraesCS5D01G395900 chrUn 80.296 203 32 6 1738 1935 30267214 30267413 2.030000e-31 147.0
12 TraesCS5D01G395900 chr3A 86.822 258 26 4 16 271 79191797 79191546 5.340000e-72 281.0
13 TraesCS5D01G395900 chr3A 78.082 219 41 6 1811 2025 190584706 190584491 5.690000e-27 132.0
14 TraesCS5D01G395900 chr6D 86.047 258 28 4 16 271 4356981 4356730 1.160000e-68 270.0
15 TraesCS5D01G395900 chr3D 85.938 256 28 4 18 271 113268869 113269118 1.490000e-67 267.0
16 TraesCS5D01G395900 chr3D 78.261 253 50 2 1778 2025 161678534 161678282 9.380000e-35 158.0
17 TraesCS5D01G395900 chr2D 85.938 256 28 4 18 271 516416804 516417053 1.490000e-67 267.0
18 TraesCS5D01G395900 chr2D 80.296 203 32 6 1738 1935 606156734 606156933 2.030000e-31 147.0
19 TraesCS5D01G395900 chr2D 73.968 315 67 9 1737 2047 554304845 554304542 2.060000e-21 113.0
20 TraesCS5D01G395900 chr4A 85.659 258 29 4 16 271 42169446 42169697 5.380000e-67 265.0
21 TraesCS5D01G395900 chr4A 85.882 255 26 6 16 267 683608979 683609226 1.930000e-66 263.0
22 TraesCS5D01G395900 chr2B 85.938 256 26 7 18 270 776136299 776136051 5.380000e-67 265.0
23 TraesCS5D01G395900 chr2B 85.475 179 21 5 1737 1912 775107686 775107862 5.570000e-42 182.0
24 TraesCS5D01G395900 chr7A 85.385 260 27 7 14 271 231101325 231101075 2.500000e-65 259.0
25 TraesCS5D01G395900 chr3B 80.184 217 40 3 1811 2025 238116909 238116694 2.610000e-35 159.0
26 TraesCS5D01G395900 chr4B 76.836 177 38 3 1737 1911 252023717 252023542 2.070000e-16 97.1
27 TraesCS5D01G395900 chr7B 73.684 266 49 11 1783 2047 591068830 591068585 1.620000e-12 84.2
28 TraesCS5D01G395900 chr7B 85.294 68 8 2 1984 2050 607190833 607190899 4.520000e-08 69.4
29 TraesCS5D01G395900 chr2A 95.000 40 1 1 1737 1775 678003227 678003188 7.570000e-06 62.1
30 TraesCS5D01G395900 chr1A 100.000 30 0 0 1778 1807 544195513 544195484 3.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G395900 chr5D 463402097 463404630 2533 True 4680 4680 100.000 1 2534 1 chr5D.!!$R3 2533
1 TraesCS5D01G395900 chr5D 463374670 463375346 676 True 832 832 88.921 860 1539 1 chr5D.!!$R2 679
2 TraesCS5D01G395900 chr5B 570173983 570175873 1890 True 2215 2215 87.879 611 2534 1 chr5B.!!$R2 1923
3 TraesCS5D01G395900 chr5B 570152014 570152681 667 True 804 804 88.399 864 1539 1 chr5B.!!$R1 675
4 TraesCS5D01G395900 chr5A 583627011 583628220 1209 True 1648 1648 91.537 549 1741 1 chr5A.!!$R3 1192
5 TraesCS5D01G395900 chr5A 583615067 583615746 679 True 913 913 90.962 860 1539 1 chr5A.!!$R2 679
6 TraesCS5D01G395900 chr5A 583608019 583608715 696 True 845 845 88.559 837 1539 1 chr5A.!!$R1 702
7 TraesCS5D01G395900 chrUn 295599695 295600362 667 True 804 804 88.399 864 1539 1 chrUn.!!$R1 675
8 TraesCS5D01G395900 chrUn 310497148 310497815 667 False 804 804 88.399 864 1539 1 chrUn.!!$F2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 431 0.032952 CGCGCCCCAATACTAGCTAA 59.967 55.0 0.0 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1824 0.023732 CGTGCGTGCGTTCATAAGAG 59.976 55.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.577805 AGTGATGGTATTGGGTTAGGC 57.422 47.619 0.00 0.00 0.00 3.93
21 22 3.123273 AGTGATGGTATTGGGTTAGGCT 58.877 45.455 0.00 0.00 0.00 4.58
22 23 4.303794 AGTGATGGTATTGGGTTAGGCTA 58.696 43.478 0.00 0.00 0.00 3.93
23 24 4.348168 AGTGATGGTATTGGGTTAGGCTAG 59.652 45.833 0.00 0.00 0.00 3.42
24 25 4.102681 GTGATGGTATTGGGTTAGGCTAGT 59.897 45.833 0.00 0.00 0.00 2.57
25 26 4.347000 TGATGGTATTGGGTTAGGCTAGTC 59.653 45.833 0.00 0.00 0.00 2.59
26 27 3.726790 TGGTATTGGGTTAGGCTAGTCA 58.273 45.455 0.00 0.00 0.00 3.41
27 28 4.303794 TGGTATTGGGTTAGGCTAGTCAT 58.696 43.478 0.00 0.00 0.00 3.06
28 29 5.469579 TGGTATTGGGTTAGGCTAGTCATA 58.530 41.667 0.00 0.00 0.00 2.15
29 30 5.542635 TGGTATTGGGTTAGGCTAGTCATAG 59.457 44.000 0.00 0.00 0.00 2.23
30 31 5.543020 GGTATTGGGTTAGGCTAGTCATAGT 59.457 44.000 0.00 0.00 0.00 2.12
31 32 5.552870 ATTGGGTTAGGCTAGTCATAGTG 57.447 43.478 0.00 0.00 0.00 2.74
32 33 3.305720 TGGGTTAGGCTAGTCATAGTGG 58.694 50.000 0.00 0.00 0.00 4.00
33 34 2.633481 GGGTTAGGCTAGTCATAGTGGG 59.367 54.545 0.00 0.00 0.00 4.61
34 35 2.633481 GGTTAGGCTAGTCATAGTGGGG 59.367 54.545 0.00 0.00 0.00 4.96
35 36 3.573695 GTTAGGCTAGTCATAGTGGGGA 58.426 50.000 0.00 0.00 0.00 4.81
36 37 2.390225 AGGCTAGTCATAGTGGGGAG 57.610 55.000 0.00 0.00 0.00 4.30
37 38 1.576272 AGGCTAGTCATAGTGGGGAGT 59.424 52.381 0.00 0.00 0.00 3.85
38 39 2.789992 AGGCTAGTCATAGTGGGGAGTA 59.210 50.000 0.00 0.00 0.00 2.59
39 40 3.206866 AGGCTAGTCATAGTGGGGAGTAA 59.793 47.826 0.00 0.00 0.00 2.24
40 41 3.321396 GGCTAGTCATAGTGGGGAGTAAC 59.679 52.174 0.00 0.00 0.00 2.50
41 42 4.216708 GCTAGTCATAGTGGGGAGTAACT 58.783 47.826 0.00 0.00 0.00 2.24
42 43 4.650131 GCTAGTCATAGTGGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
43 44 5.832060 GCTAGTCATAGTGGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
44 45 6.016108 GCTAGTCATAGTGGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
45 46 5.209659 AGTCATAGTGGGGAGTAACTTAGG 58.790 45.833 0.00 0.00 0.00 2.69
46 47 3.965347 TCATAGTGGGGAGTAACTTAGGC 59.035 47.826 0.00 0.00 0.00 3.93
47 48 2.644060 AGTGGGGAGTAACTTAGGCT 57.356 50.000 0.00 0.00 0.00 4.58
48 49 3.771071 AGTGGGGAGTAACTTAGGCTA 57.229 47.619 0.00 0.00 0.00 3.93
49 50 3.644335 AGTGGGGAGTAACTTAGGCTAG 58.356 50.000 0.00 0.00 0.00 3.42
50 51 3.012616 AGTGGGGAGTAACTTAGGCTAGT 59.987 47.826 0.00 0.00 0.00 2.57
51 52 3.132467 GTGGGGAGTAACTTAGGCTAGTG 59.868 52.174 0.00 0.00 0.00 2.74
52 53 3.245875 TGGGGAGTAACTTAGGCTAGTGT 60.246 47.826 0.00 0.00 0.00 3.55
53 54 3.384146 GGGGAGTAACTTAGGCTAGTGTC 59.616 52.174 0.00 0.00 0.00 3.67
54 55 4.021916 GGGAGTAACTTAGGCTAGTGTCA 58.978 47.826 0.00 0.00 0.00 3.58
55 56 4.650131 GGGAGTAACTTAGGCTAGTGTCAT 59.350 45.833 0.00 0.00 0.00 3.06
56 57 5.452077 GGGAGTAACTTAGGCTAGTGTCATG 60.452 48.000 0.00 0.00 0.00 3.07
57 58 5.127356 GGAGTAACTTAGGCTAGTGTCATGT 59.873 44.000 0.00 0.00 0.00 3.21
58 59 5.967088 AGTAACTTAGGCTAGTGTCATGTG 58.033 41.667 0.00 0.00 0.00 3.21
59 60 4.891992 AACTTAGGCTAGTGTCATGTGT 57.108 40.909 0.00 0.00 0.00 3.72
60 61 5.995565 AACTTAGGCTAGTGTCATGTGTA 57.004 39.130 0.00 0.00 0.00 2.90
61 62 6.546428 AACTTAGGCTAGTGTCATGTGTAT 57.454 37.500 0.00 0.00 0.00 2.29
62 63 5.907207 ACTTAGGCTAGTGTCATGTGTATG 58.093 41.667 0.00 0.00 35.57 2.39
63 64 5.656859 ACTTAGGCTAGTGTCATGTGTATGA 59.343 40.000 0.00 0.00 40.92 2.15
87 88 9.511272 TGACACTAGTCTATGTTACTAACTTCA 57.489 33.333 0.00 0.00 45.20 3.02
130 131 9.836864 AAAAGTAGTGTATCATAGATGATTGCA 57.163 29.630 10.18 7.59 44.70 4.08
167 168 9.778741 TGTAGACTCATTTTAATTGAGTTGAGT 57.221 29.630 19.26 13.50 44.64 3.41
204 205 7.875327 ACATATTATGTTACCTCAAACACCC 57.125 36.000 3.40 0.00 41.63 4.61
205 206 7.639378 ACATATTATGTTACCTCAAACACCCT 58.361 34.615 3.40 0.00 41.63 4.34
206 207 7.773690 ACATATTATGTTACCTCAAACACCCTC 59.226 37.037 3.40 0.00 41.63 4.30
207 208 5.836024 TTATGTTACCTCAAACACCCTCT 57.164 39.130 0.00 0.00 41.89 3.69
208 209 3.764237 TGTTACCTCAAACACCCTCTC 57.236 47.619 0.00 0.00 34.50 3.20
209 210 3.314693 TGTTACCTCAAACACCCTCTCT 58.685 45.455 0.00 0.00 34.50 3.10
210 211 3.714798 TGTTACCTCAAACACCCTCTCTT 59.285 43.478 0.00 0.00 34.50 2.85
211 212 4.202326 TGTTACCTCAAACACCCTCTCTTC 60.202 45.833 0.00 0.00 34.50 2.87
212 213 2.408565 ACCTCAAACACCCTCTCTTCA 58.591 47.619 0.00 0.00 0.00 3.02
213 214 2.982488 ACCTCAAACACCCTCTCTTCAT 59.018 45.455 0.00 0.00 0.00 2.57
214 215 3.395941 ACCTCAAACACCCTCTCTTCATT 59.604 43.478 0.00 0.00 0.00 2.57
215 216 4.597507 ACCTCAAACACCCTCTCTTCATTA 59.402 41.667 0.00 0.00 0.00 1.90
216 217 5.073144 ACCTCAAACACCCTCTCTTCATTAA 59.927 40.000 0.00 0.00 0.00 1.40
217 218 6.183347 CCTCAAACACCCTCTCTTCATTAAT 58.817 40.000 0.00 0.00 0.00 1.40
218 219 6.660949 CCTCAAACACCCTCTCTTCATTAATT 59.339 38.462 0.00 0.00 0.00 1.40
219 220 7.829211 CCTCAAACACCCTCTCTTCATTAATTA 59.171 37.037 0.00 0.00 0.00 1.40
220 221 8.561738 TCAAACACCCTCTCTTCATTAATTAC 57.438 34.615 0.00 0.00 0.00 1.89
221 222 8.160765 TCAAACACCCTCTCTTCATTAATTACA 58.839 33.333 0.00 0.00 0.00 2.41
222 223 8.960591 CAAACACCCTCTCTTCATTAATTACAT 58.039 33.333 0.00 0.00 0.00 2.29
223 224 8.511604 AACACCCTCTCTTCATTAATTACATG 57.488 34.615 0.00 0.00 0.00 3.21
224 225 6.543831 ACACCCTCTCTTCATTAATTACATGC 59.456 38.462 0.00 0.00 0.00 4.06
225 226 6.016777 CACCCTCTCTTCATTAATTACATGCC 60.017 42.308 0.00 0.00 0.00 4.40
226 227 6.064060 CCCTCTCTTCATTAATTACATGCCA 58.936 40.000 0.00 0.00 0.00 4.92
227 228 6.016777 CCCTCTCTTCATTAATTACATGCCAC 60.017 42.308 0.00 0.00 0.00 5.01
228 229 6.543465 CCTCTCTTCATTAATTACATGCCACA 59.457 38.462 0.00 0.00 0.00 4.17
229 230 7.230108 CCTCTCTTCATTAATTACATGCCACAT 59.770 37.037 0.00 0.00 0.00 3.21
230 231 9.276590 CTCTCTTCATTAATTACATGCCACATA 57.723 33.333 0.00 0.00 0.00 2.29
231 232 9.625747 TCTCTTCATTAATTACATGCCACATAA 57.374 29.630 0.00 0.00 0.00 1.90
241 242 9.835389 AATTACATGCCACATAATTAAGCAAAT 57.165 25.926 0.00 1.98 36.95 2.32
242 243 9.835389 ATTACATGCCACATAATTAAGCAAATT 57.165 25.926 0.00 3.02 40.87 1.82
244 245 8.876275 ACATGCCACATAATTAAGCAAATTAG 57.124 30.769 9.33 5.54 42.03 1.73
245 246 8.477256 ACATGCCACATAATTAAGCAAATTAGT 58.523 29.630 9.33 5.98 42.03 2.24
246 247 8.971321 CATGCCACATAATTAAGCAAATTAGTC 58.029 33.333 9.33 0.69 42.03 2.59
247 248 7.488322 TGCCACATAATTAAGCAAATTAGTCC 58.512 34.615 9.33 4.19 42.03 3.85
248 249 7.341769 TGCCACATAATTAAGCAAATTAGTCCT 59.658 33.333 9.33 0.00 42.03 3.85
249 250 7.649306 GCCACATAATTAAGCAAATTAGTCCTG 59.351 37.037 9.33 6.12 42.03 3.86
250 251 8.902806 CCACATAATTAAGCAAATTAGTCCTGA 58.097 33.333 9.33 0.00 42.03 3.86
256 257 9.643693 AATTAAGCAAATTAGTCCTGAAATGTG 57.356 29.630 0.00 0.00 35.98 3.21
257 258 5.064441 AGCAAATTAGTCCTGAAATGTGC 57.936 39.130 2.65 2.65 43.65 4.57
258 259 4.768968 AGCAAATTAGTCCTGAAATGTGCT 59.231 37.500 6.86 6.86 46.85 4.40
259 260 6.194796 GCAAATTAGTCCTGAAATGTGCTA 57.805 37.500 3.52 0.00 41.26 3.49
260 261 6.799512 GCAAATTAGTCCTGAAATGTGCTAT 58.200 36.000 3.52 0.00 41.26 2.97
261 262 6.694411 GCAAATTAGTCCTGAAATGTGCTATG 59.306 38.462 3.52 0.00 41.26 2.23
262 263 7.629222 GCAAATTAGTCCTGAAATGTGCTATGT 60.629 37.037 3.52 0.00 41.26 2.29
263 264 7.944729 AATTAGTCCTGAAATGTGCTATGTT 57.055 32.000 0.00 0.00 0.00 2.71
264 265 9.461312 AAATTAGTCCTGAAATGTGCTATGTTA 57.539 29.630 0.00 0.00 0.00 2.41
265 266 7.843490 TTAGTCCTGAAATGTGCTATGTTAC 57.157 36.000 0.00 0.00 0.00 2.50
266 267 6.054860 AGTCCTGAAATGTGCTATGTTACT 57.945 37.500 0.00 0.00 0.00 2.24
267 268 7.182817 AGTCCTGAAATGTGCTATGTTACTA 57.817 36.000 0.00 0.00 0.00 1.82
268 269 7.268586 AGTCCTGAAATGTGCTATGTTACTAG 58.731 38.462 0.00 0.00 0.00 2.57
269 270 6.018669 GTCCTGAAATGTGCTATGTTACTAGC 60.019 42.308 6.81 6.81 43.61 3.42
270 271 6.051717 CCTGAAATGTGCTATGTTACTAGCT 58.948 40.000 12.43 0.00 43.68 3.32
271 272 6.540189 CCTGAAATGTGCTATGTTACTAGCTT 59.460 38.462 0.00 2.52 43.68 3.74
272 273 7.710907 CCTGAAATGTGCTATGTTACTAGCTTA 59.289 37.037 0.00 5.07 43.68 3.09
273 274 9.098355 CTGAAATGTGCTATGTTACTAGCTTAA 57.902 33.333 0.00 0.00 43.68 1.85
274 275 9.443323 TGAAATGTGCTATGTTACTAGCTTAAA 57.557 29.630 0.00 0.00 43.68 1.52
275 276 9.922305 GAAATGTGCTATGTTACTAGCTTAAAG 57.078 33.333 0.00 0.00 43.68 1.85
276 277 6.903883 TGTGCTATGTTACTAGCTTAAAGC 57.096 37.500 0.00 0.00 43.68 3.51
287 288 2.808157 GCTTAAAGCGGTGCTCTAAC 57.192 50.000 0.00 0.00 38.25 2.34
288 289 1.060698 GCTTAAAGCGGTGCTCTAACG 59.939 52.381 0.00 0.00 38.25 3.18
289 290 1.659098 CTTAAAGCGGTGCTCTAACGG 59.341 52.381 0.00 0.00 38.25 4.44
290 291 0.889994 TAAAGCGGTGCTCTAACGGA 59.110 50.000 0.00 0.00 38.25 4.69
291 292 0.389948 AAAGCGGTGCTCTAACGGAG 60.390 55.000 0.00 0.00 38.25 4.63
299 300 3.906660 CTCTAACGGAGCACACCAA 57.093 52.632 0.00 0.00 35.08 3.67
300 301 2.163818 CTCTAACGGAGCACACCAAA 57.836 50.000 0.00 0.00 35.08 3.28
301 302 2.489971 CTCTAACGGAGCACACCAAAA 58.510 47.619 0.00 0.00 35.08 2.44
302 303 3.074412 CTCTAACGGAGCACACCAAAAT 58.926 45.455 0.00 0.00 35.08 1.82
303 304 4.250464 CTCTAACGGAGCACACCAAAATA 58.750 43.478 0.00 0.00 35.08 1.40
304 305 4.250464 TCTAACGGAGCACACCAAAATAG 58.750 43.478 0.00 0.00 0.00 1.73
305 306 1.821216 ACGGAGCACACCAAAATAGG 58.179 50.000 0.00 0.00 0.00 2.57
306 307 1.073284 ACGGAGCACACCAAAATAGGT 59.927 47.619 0.00 0.00 44.48 3.08
307 308 1.737793 CGGAGCACACCAAAATAGGTC 59.262 52.381 0.00 0.00 40.77 3.85
308 309 2.790433 GGAGCACACCAAAATAGGTCA 58.210 47.619 0.00 0.00 40.77 4.02
309 310 2.749621 GGAGCACACCAAAATAGGTCAG 59.250 50.000 0.00 0.00 40.77 3.51
310 311 3.559171 GGAGCACACCAAAATAGGTCAGA 60.559 47.826 0.00 0.00 40.77 3.27
311 312 4.265073 GAGCACACCAAAATAGGTCAGAT 58.735 43.478 0.00 0.00 40.77 2.90
312 313 4.012374 AGCACACCAAAATAGGTCAGATG 58.988 43.478 0.00 0.00 40.77 2.90
313 314 3.129287 GCACACCAAAATAGGTCAGATGG 59.871 47.826 0.00 0.00 40.77 3.51
314 315 3.129287 CACACCAAAATAGGTCAGATGGC 59.871 47.826 0.00 0.00 40.77 4.40
315 316 2.355756 CACCAAAATAGGTCAGATGGCG 59.644 50.000 0.00 0.00 40.77 5.69
316 317 2.238646 ACCAAAATAGGTCAGATGGCGA 59.761 45.455 0.00 0.00 37.28 5.54
317 318 2.614057 CCAAAATAGGTCAGATGGCGAC 59.386 50.000 0.00 0.00 0.00 5.19
318 319 6.384686 ACCAAAATAGGTCAGATGGCGACA 62.385 45.833 0.00 0.00 41.50 4.35
328 329 3.654201 TGGCGACAGATTGTGCAC 58.346 55.556 10.75 10.75 35.01 4.57
329 330 1.071299 TGGCGACAGATTGTGCACT 59.929 52.632 19.41 0.00 35.01 4.40
330 331 0.320050 TGGCGACAGATTGTGCACTA 59.680 50.000 19.41 11.52 35.01 2.74
331 332 0.721718 GGCGACAGATTGTGCACTAC 59.278 55.000 19.41 9.21 0.00 2.73
332 333 1.673033 GGCGACAGATTGTGCACTACT 60.673 52.381 19.41 11.37 0.00 2.57
333 334 1.391485 GCGACAGATTGTGCACTACTG 59.609 52.381 24.89 24.89 35.14 2.74
334 335 1.391485 CGACAGATTGTGCACTACTGC 59.609 52.381 25.75 19.96 44.52 4.40
377 378 5.134202 CCAATGGTTAAGGTTTGGTTCTC 57.866 43.478 0.00 0.00 35.07 2.87
378 379 4.586841 CCAATGGTTAAGGTTTGGTTCTCA 59.413 41.667 0.00 0.00 35.07 3.27
379 380 5.245977 CCAATGGTTAAGGTTTGGTTCTCAT 59.754 40.000 0.00 0.00 35.07 2.90
380 381 6.435904 CCAATGGTTAAGGTTTGGTTCTCATA 59.564 38.462 0.00 0.00 35.07 2.15
381 382 7.039363 CCAATGGTTAAGGTTTGGTTCTCATAA 60.039 37.037 0.00 0.00 35.07 1.90
382 383 8.531146 CAATGGTTAAGGTTTGGTTCTCATAAT 58.469 33.333 0.00 0.00 0.00 1.28
383 384 7.461182 TGGTTAAGGTTTGGTTCTCATAATG 57.539 36.000 0.00 0.00 0.00 1.90
384 385 6.435904 TGGTTAAGGTTTGGTTCTCATAATGG 59.564 38.462 0.00 0.00 0.00 3.16
385 386 6.127451 GGTTAAGGTTTGGTTCTCATAATGGG 60.127 42.308 0.00 0.00 0.00 4.00
386 387 4.946160 AGGTTTGGTTCTCATAATGGGA 57.054 40.909 0.00 0.00 0.00 4.37
387 388 4.860022 AGGTTTGGTTCTCATAATGGGAG 58.140 43.478 0.00 0.00 0.00 4.30
388 389 3.954258 GGTTTGGTTCTCATAATGGGAGG 59.046 47.826 0.00 0.00 33.18 4.30
389 390 4.325030 GGTTTGGTTCTCATAATGGGAGGA 60.325 45.833 0.00 0.00 33.18 3.71
390 391 4.778213 TTGGTTCTCATAATGGGAGGAG 57.222 45.455 0.00 0.00 33.18 3.69
391 392 3.736094 TGGTTCTCATAATGGGAGGAGT 58.264 45.455 0.00 0.00 33.18 3.85
392 393 4.890988 TGGTTCTCATAATGGGAGGAGTA 58.109 43.478 0.00 0.00 33.18 2.59
393 394 5.285401 TGGTTCTCATAATGGGAGGAGTAA 58.715 41.667 0.00 0.00 33.18 2.24
394 395 5.130477 TGGTTCTCATAATGGGAGGAGTAAC 59.870 44.000 0.00 0.00 33.18 2.50
395 396 5.367060 GGTTCTCATAATGGGAGGAGTAACT 59.633 44.000 0.00 0.00 33.18 2.24
396 397 6.126739 GGTTCTCATAATGGGAGGAGTAACTT 60.127 42.308 0.00 0.00 33.18 2.66
397 398 7.070821 GGTTCTCATAATGGGAGGAGTAACTTA 59.929 40.741 0.00 0.00 33.18 2.24
398 399 7.841282 TCTCATAATGGGAGGAGTAACTTAG 57.159 40.000 0.00 0.00 33.18 2.18
399 400 6.267928 TCTCATAATGGGAGGAGTAACTTAGC 59.732 42.308 0.00 0.00 33.18 3.09
400 401 3.821421 AATGGGAGGAGTAACTTAGCG 57.179 47.619 0.00 0.00 0.00 4.26
401 402 2.519771 TGGGAGGAGTAACTTAGCGA 57.480 50.000 0.00 0.00 0.00 4.93
402 403 2.376109 TGGGAGGAGTAACTTAGCGAG 58.624 52.381 0.00 0.00 0.00 5.03
403 404 2.291411 TGGGAGGAGTAACTTAGCGAGT 60.291 50.000 0.00 0.00 41.47 4.18
404 405 3.054139 TGGGAGGAGTAACTTAGCGAGTA 60.054 47.826 0.00 0.00 37.72 2.59
405 406 3.950395 GGGAGGAGTAACTTAGCGAGTAA 59.050 47.826 0.00 0.00 37.72 2.24
406 407 4.583907 GGGAGGAGTAACTTAGCGAGTAAT 59.416 45.833 0.00 0.00 37.72 1.89
407 408 5.767168 GGGAGGAGTAACTTAGCGAGTAATA 59.233 44.000 0.00 0.00 37.72 0.98
408 409 6.433716 GGGAGGAGTAACTTAGCGAGTAATAT 59.566 42.308 0.00 0.00 37.72 1.28
409 410 7.609532 GGGAGGAGTAACTTAGCGAGTAATATA 59.390 40.741 0.00 0.00 37.72 0.86
410 411 9.007901 GGAGGAGTAACTTAGCGAGTAATATAA 57.992 37.037 0.00 0.00 37.72 0.98
411 412 9.824534 GAGGAGTAACTTAGCGAGTAATATAAC 57.175 37.037 0.00 0.00 37.72 1.89
412 413 8.502387 AGGAGTAACTTAGCGAGTAATATAACG 58.498 37.037 0.00 0.00 37.72 3.18
418 419 1.343506 CGAGTAATATAACGCGCCCC 58.656 55.000 5.73 0.00 35.95 5.80
419 420 1.336148 CGAGTAATATAACGCGCCCCA 60.336 52.381 5.73 0.00 35.95 4.96
420 421 2.758009 GAGTAATATAACGCGCCCCAA 58.242 47.619 5.73 0.00 0.00 4.12
421 422 3.332034 GAGTAATATAACGCGCCCCAAT 58.668 45.455 5.73 0.00 0.00 3.16
422 423 4.497300 GAGTAATATAACGCGCCCCAATA 58.503 43.478 5.73 0.00 0.00 1.90
423 424 4.248058 AGTAATATAACGCGCCCCAATAC 58.752 43.478 5.73 3.68 0.00 1.89
424 425 3.412237 AATATAACGCGCCCCAATACT 57.588 42.857 5.73 0.00 0.00 2.12
425 426 4.540359 AATATAACGCGCCCCAATACTA 57.460 40.909 5.73 0.00 0.00 1.82
426 427 2.450609 ATAACGCGCCCCAATACTAG 57.549 50.000 5.73 0.00 0.00 2.57
427 428 0.249573 TAACGCGCCCCAATACTAGC 60.250 55.000 5.73 0.00 0.00 3.42
428 429 1.968050 AACGCGCCCCAATACTAGCT 61.968 55.000 5.73 0.00 0.00 3.32
429 430 1.111116 ACGCGCCCCAATACTAGCTA 61.111 55.000 5.73 0.00 0.00 3.32
430 431 0.032952 CGCGCCCCAATACTAGCTAA 59.967 55.000 0.00 0.00 0.00 3.09
431 432 1.539496 CGCGCCCCAATACTAGCTAAA 60.539 52.381 0.00 0.00 0.00 1.85
432 433 2.567985 GCGCCCCAATACTAGCTAAAA 58.432 47.619 0.00 0.00 0.00 1.52
433 434 2.548480 GCGCCCCAATACTAGCTAAAAG 59.452 50.000 0.00 0.00 0.00 2.27
434 435 2.548480 CGCCCCAATACTAGCTAAAAGC 59.452 50.000 0.00 0.00 42.84 3.51
453 454 3.813529 GCGTGTGCTATGTTTTCTTCT 57.186 42.857 0.00 0.00 38.39 2.85
454 455 3.482786 GCGTGTGCTATGTTTTCTTCTG 58.517 45.455 0.00 0.00 38.39 3.02
455 456 3.058914 GCGTGTGCTATGTTTTCTTCTGT 60.059 43.478 0.00 0.00 38.39 3.41
456 457 4.702392 CGTGTGCTATGTTTTCTTCTGTC 58.298 43.478 0.00 0.00 0.00 3.51
457 458 4.664139 CGTGTGCTATGTTTTCTTCTGTCG 60.664 45.833 0.00 0.00 0.00 4.35
458 459 3.186409 TGTGCTATGTTTTCTTCTGTCGC 59.814 43.478 0.00 0.00 0.00 5.19
459 460 3.186409 GTGCTATGTTTTCTTCTGTCGCA 59.814 43.478 0.00 0.00 0.00 5.10
460 461 3.812609 TGCTATGTTTTCTTCTGTCGCAA 59.187 39.130 0.00 0.00 0.00 4.85
461 462 4.151798 GCTATGTTTTCTTCTGTCGCAAC 58.848 43.478 0.00 0.00 0.00 4.17
462 463 2.730183 TGTTTTCTTCTGTCGCAACG 57.270 45.000 0.00 0.00 0.00 4.10
463 464 1.267832 TGTTTTCTTCTGTCGCAACGC 60.268 47.619 0.00 0.00 0.00 4.84
464 465 1.010580 TTTTCTTCTGTCGCAACGCA 58.989 45.000 0.00 0.00 0.00 5.24
465 466 0.303493 TTTCTTCTGTCGCAACGCAC 59.697 50.000 0.00 0.00 0.00 5.34
466 467 0.808060 TTCTTCTGTCGCAACGCACA 60.808 50.000 0.00 0.00 0.00 4.57
467 468 1.202568 CTTCTGTCGCAACGCACAG 59.797 57.895 11.00 11.00 38.25 3.66
468 469 1.215014 CTTCTGTCGCAACGCACAGA 61.215 55.000 14.07 14.07 41.23 3.41
469 470 1.487452 TTCTGTCGCAACGCACAGAC 61.487 55.000 16.29 3.98 41.95 3.51
470 471 1.951130 CTGTCGCAACGCACAGACT 60.951 57.895 11.53 0.00 38.75 3.24
471 472 1.880601 CTGTCGCAACGCACAGACTC 61.881 60.000 11.53 0.00 38.75 3.36
472 473 1.661821 GTCGCAACGCACAGACTCT 60.662 57.895 0.00 0.00 0.00 3.24
473 474 1.067416 TCGCAACGCACAGACTCTT 59.933 52.632 0.00 0.00 0.00 2.85
474 475 0.529773 TCGCAACGCACAGACTCTTT 60.530 50.000 0.00 0.00 0.00 2.52
475 476 0.111089 CGCAACGCACAGACTCTTTC 60.111 55.000 0.00 0.00 0.00 2.62
476 477 0.111089 GCAACGCACAGACTCTTTCG 60.111 55.000 0.00 0.00 0.00 3.46
477 478 1.209128 CAACGCACAGACTCTTTCGT 58.791 50.000 0.00 0.00 0.00 3.85
478 479 1.593006 CAACGCACAGACTCTTTCGTT 59.407 47.619 0.00 0.00 40.19 3.85
479 480 2.787601 ACGCACAGACTCTTTCGTTA 57.212 45.000 0.00 0.00 0.00 3.18
480 481 3.088194 ACGCACAGACTCTTTCGTTAA 57.912 42.857 0.00 0.00 0.00 2.01
481 482 3.650139 ACGCACAGACTCTTTCGTTAAT 58.350 40.909 0.00 0.00 0.00 1.40
482 483 4.801891 ACGCACAGACTCTTTCGTTAATA 58.198 39.130 0.00 0.00 0.00 0.98
483 484 5.224888 ACGCACAGACTCTTTCGTTAATAA 58.775 37.500 0.00 0.00 0.00 1.40
484 485 5.693104 ACGCACAGACTCTTTCGTTAATAAA 59.307 36.000 0.00 0.00 0.00 1.40
485 486 6.367969 ACGCACAGACTCTTTCGTTAATAAAT 59.632 34.615 0.00 0.00 0.00 1.40
486 487 7.543172 ACGCACAGACTCTTTCGTTAATAAATA 59.457 33.333 0.00 0.00 0.00 1.40
487 488 8.377681 CGCACAGACTCTTTCGTTAATAAATAA 58.622 33.333 0.00 0.00 0.00 1.40
488 489 9.474249 GCACAGACTCTTTCGTTAATAAATAAC 57.526 33.333 0.00 0.00 40.47 1.89
489 490 9.968743 CACAGACTCTTTCGTTAATAAATAACC 57.031 33.333 0.00 0.00 40.73 2.85
490 491 9.715121 ACAGACTCTTTCGTTAATAAATAACCA 57.285 29.630 0.00 0.00 40.73 3.67
512 513 2.271821 AAATAACCGCGGTCAATTGC 57.728 45.000 34.29 0.00 0.00 3.56
513 514 0.454196 AATAACCGCGGTCAATTGCC 59.546 50.000 34.29 4.73 0.00 4.52
520 521 4.759205 GGTCAATTGCCGCCCCCT 62.759 66.667 0.00 0.00 0.00 4.79
521 522 2.274104 GTCAATTGCCGCCCCCTA 59.726 61.111 0.00 0.00 0.00 3.53
522 523 1.152756 GTCAATTGCCGCCCCCTAT 60.153 57.895 0.00 0.00 0.00 2.57
523 524 0.755327 GTCAATTGCCGCCCCCTATT 60.755 55.000 0.00 0.00 0.00 1.73
524 525 0.754957 TCAATTGCCGCCCCCTATTG 60.755 55.000 0.00 0.00 0.00 1.90
525 526 2.133641 AATTGCCGCCCCCTATTGC 61.134 57.895 0.00 0.00 0.00 3.56
526 527 4.832088 TTGCCGCCCCCTATTGCC 62.832 66.667 0.00 0.00 0.00 4.52
530 531 4.169696 CGCCCCCTATTGCCACGA 62.170 66.667 0.00 0.00 0.00 4.35
531 532 2.203209 GCCCCCTATTGCCACGAG 60.203 66.667 0.00 0.00 0.00 4.18
532 533 3.043999 GCCCCCTATTGCCACGAGT 62.044 63.158 0.00 0.00 0.00 4.18
533 534 1.146263 CCCCCTATTGCCACGAGTC 59.854 63.158 0.00 0.00 0.00 3.36
534 535 1.146263 CCCCTATTGCCACGAGTCC 59.854 63.158 0.00 0.00 0.00 3.85
535 536 1.338136 CCCCTATTGCCACGAGTCCT 61.338 60.000 0.00 0.00 0.00 3.85
536 537 0.105039 CCCTATTGCCACGAGTCCTC 59.895 60.000 0.00 0.00 0.00 3.71
545 546 2.432628 CGAGTCCTCGTGCCAACC 60.433 66.667 8.50 0.00 46.99 3.77
546 547 2.932234 CGAGTCCTCGTGCCAACCT 61.932 63.158 8.50 0.00 46.99 3.50
547 548 1.371558 GAGTCCTCGTGCCAACCTT 59.628 57.895 0.00 0.00 0.00 3.50
590 591 3.703001 ATTGGAAGGACTAGTGTGTGG 57.297 47.619 0.00 0.00 0.00 4.17
609 615 2.568090 GGGTGCATGGAAAGTGCG 59.432 61.111 0.00 0.00 45.37 5.34
654 660 3.306166 GTGTTCATTCGGTCATACCTTCG 59.694 47.826 0.00 0.00 35.66 3.79
658 664 1.766494 TTCGGTCATACCTTCGCCTA 58.234 50.000 0.00 0.00 35.66 3.93
659 665 1.027357 TCGGTCATACCTTCGCCTAC 58.973 55.000 0.00 0.00 35.66 3.18
660 666 1.030457 CGGTCATACCTTCGCCTACT 58.970 55.000 0.00 0.00 35.66 2.57
661 667 1.269102 CGGTCATACCTTCGCCTACTG 60.269 57.143 0.00 0.00 35.66 2.74
662 668 1.538419 GGTCATACCTTCGCCTACTGC 60.538 57.143 0.00 0.00 34.73 4.40
727 734 5.449314 CGAAGTCCACGATCAACTATCTCTT 60.449 44.000 0.00 0.00 31.87 2.85
730 737 5.044558 GTCCACGATCAACTATCTCTTTCC 58.955 45.833 0.00 0.00 31.87 3.13
731 738 4.045104 CCACGATCAACTATCTCTTTCCG 58.955 47.826 0.00 0.00 31.87 4.30
757 770 5.442909 CGCATACTACAAGAACAAGACGAAC 60.443 44.000 0.00 0.00 0.00 3.95
774 787 6.384224 AGACGAACGTGAAAGATACACATAA 58.616 36.000 4.19 0.00 38.04 1.90
776 789 7.045725 ACGAACGTGAAAGATACACATAAAG 57.954 36.000 0.00 0.00 38.04 1.85
827 840 6.657966 AGAAATACTAAACTAAACACTGGGGC 59.342 38.462 0.00 0.00 0.00 5.80
830 843 1.699730 AAACTAAACACTGGGGCCAC 58.300 50.000 4.39 0.00 0.00 5.01
929 952 0.538287 GCACAAACCTCCAGCTCCTT 60.538 55.000 0.00 0.00 0.00 3.36
1285 1317 2.055042 CAGGGCCTCTACGTCAGCT 61.055 63.158 0.95 0.00 0.00 4.24
1565 1597 4.973055 TTTCGTGCCCGGTCGGTG 62.973 66.667 8.67 1.52 33.95 4.94
1588 1624 5.912396 TGCTGTGATTGTTAATTCGTTGTTC 59.088 36.000 0.00 0.00 0.00 3.18
1663 1699 5.464389 CCAATAGCTTATTTGCATTTGGAGC 59.536 40.000 12.11 0.00 43.59 4.70
1667 1703 4.157656 AGCTTATTTGCATTTGGAGCGTAA 59.842 37.500 0.00 0.00 34.09 3.18
1726 1762 5.470047 AATAGTGGATTCGCCTAACTAGG 57.530 43.478 0.00 0.00 46.42 3.02
1730 1766 1.343789 GGATTCGCCTAACTAGGGACC 59.656 57.143 4.95 0.00 43.82 4.46
1763 1799 8.450385 TTTTTAAAACAGTACAACCAAAGTCG 57.550 30.769 0.00 0.00 0.00 4.18
1767 1803 2.159014 ACAGTACAACCAAAGTCGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
1788 1824 5.158494 TCACATACACGAACATACACTCAC 58.842 41.667 0.00 0.00 0.00 3.51
1791 1827 5.183331 ACATACACGAACATACACTCACTCT 59.817 40.000 0.00 0.00 0.00 3.24
1792 1828 4.585955 ACACGAACATACACTCACTCTT 57.414 40.909 0.00 0.00 0.00 2.85
1799 1835 6.021390 CGAACATACACTCACTCTTATGAACG 60.021 42.308 0.00 0.00 0.00 3.95
1802 1838 3.318017 ACACTCACTCTTATGAACGCAC 58.682 45.455 0.00 0.00 0.00 5.34
1806 1842 1.068474 ACTCTTATGAACGCACGCAC 58.932 50.000 0.00 0.00 0.00 5.34
1814 1850 2.807895 ACGCACGCACGTACATCC 60.808 61.111 0.96 0.00 46.19 3.51
1829 1866 3.046283 ACATCCTACCCTATGAGCACA 57.954 47.619 0.00 0.00 0.00 4.57
1843 1880 0.969149 AGCACATCCGAGACACTGAA 59.031 50.000 0.00 0.00 0.00 3.02
1856 1893 0.314935 CACTGAACCGGCAAAGCATT 59.685 50.000 0.00 0.00 0.00 3.56
1868 1905 5.163963 CCGGCAAAGCATTTTGAGATTTTAC 60.164 40.000 2.79 0.00 45.21 2.01
1869 1906 5.404968 CGGCAAAGCATTTTGAGATTTTACA 59.595 36.000 2.79 0.00 45.21 2.41
1878 1915 7.437862 GCATTTTGAGATTTTACAAAGTCACCA 59.562 33.333 0.00 0.00 37.32 4.17
1883 1920 5.772521 AGATTTTACAAAGTCACCACATGC 58.227 37.500 0.00 0.00 0.00 4.06
1888 1925 0.823356 AAAGTCACCACATGCGCCTT 60.823 50.000 4.18 0.00 0.00 4.35
1904 1941 1.300620 CTTGCAGTCGACGGGAACA 60.301 57.895 17.81 4.59 0.00 3.18
1911 1948 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
1912 1949 0.034380 TCGACGGGAACATCTCCTCT 60.034 55.000 0.00 0.00 44.68 3.69
1915 1952 1.407258 GACGGGAACATCTCCTCTCAG 59.593 57.143 0.00 0.00 44.68 3.35
1918 1955 2.183679 GGGAACATCTCCTCTCAGTGT 58.816 52.381 0.00 0.00 44.68 3.55
1920 1957 3.383185 GGGAACATCTCCTCTCAGTGTAG 59.617 52.174 0.00 0.00 44.68 2.74
1924 1961 4.877773 ACATCTCCTCTCAGTGTAGGAAT 58.122 43.478 15.03 10.19 41.33 3.01
1939 1976 2.609747 AGGAATATCGCCAGAAGCCTA 58.390 47.619 0.00 0.00 38.78 3.93
1940 1977 2.972713 AGGAATATCGCCAGAAGCCTAA 59.027 45.455 0.00 0.00 38.78 2.69
1949 1986 3.674753 CGCCAGAAGCCTAAAAACAAATG 59.325 43.478 0.00 0.00 38.78 2.32
1950 1987 4.631131 GCCAGAAGCCTAAAAACAAATGT 58.369 39.130 0.00 0.00 34.35 2.71
1952 1989 5.863935 GCCAGAAGCCTAAAAACAAATGTAG 59.136 40.000 0.00 0.00 34.35 2.74
1955 1992 8.141268 CCAGAAGCCTAAAAACAAATGTAGAAA 58.859 33.333 0.00 0.00 0.00 2.52
1965 2002 7.740519 AAACAAATGTAGAAATAATGCGAGC 57.259 32.000 0.00 0.00 0.00 5.03
2009 2046 4.399764 CCAGGTGGGCTGGAGATA 57.600 61.111 0.00 0.00 44.39 1.98
2013 2050 1.770658 CAGGTGGGCTGGAGATATCAA 59.229 52.381 5.32 0.00 0.00 2.57
2021 2058 3.582208 GGCTGGAGATATCAATGTCCTCT 59.418 47.826 5.32 0.00 44.26 3.69
2024 2061 6.239714 GGCTGGAGATATCAATGTCCTCTTAA 60.240 42.308 5.32 0.00 44.26 1.85
2026 2063 7.067496 TGGAGATATCAATGTCCTCTTAACC 57.933 40.000 5.32 0.00 44.26 2.85
2027 2064 6.615316 TGGAGATATCAATGTCCTCTTAACCA 59.385 38.462 5.32 0.00 44.26 3.67
2028 2065 7.293299 TGGAGATATCAATGTCCTCTTAACCAT 59.707 37.037 5.32 0.00 44.26 3.55
2029 2066 7.821846 GGAGATATCAATGTCCTCTTAACCATC 59.178 40.741 5.32 0.00 41.39 3.51
2030 2067 7.684529 AGATATCAATGTCCTCTTAACCATCC 58.315 38.462 5.32 0.00 0.00 3.51
2031 2068 5.715439 ATCAATGTCCTCTTAACCATCCA 57.285 39.130 0.00 0.00 0.00 3.41
2032 2069 5.512942 TCAATGTCCTCTTAACCATCCAA 57.487 39.130 0.00 0.00 0.00 3.53
2033 2070 5.253330 TCAATGTCCTCTTAACCATCCAAC 58.747 41.667 0.00 0.00 0.00 3.77
2034 2071 5.014123 TCAATGTCCTCTTAACCATCCAACT 59.986 40.000 0.00 0.00 0.00 3.16
2035 2072 6.214615 TCAATGTCCTCTTAACCATCCAACTA 59.785 38.462 0.00 0.00 0.00 2.24
2036 2073 6.831664 ATGTCCTCTTAACCATCCAACTAT 57.168 37.500 0.00 0.00 0.00 2.12
2037 2074 7.931015 ATGTCCTCTTAACCATCCAACTATA 57.069 36.000 0.00 0.00 0.00 1.31
2038 2075 7.361457 TGTCCTCTTAACCATCCAACTATAG 57.639 40.000 0.00 0.00 0.00 1.31
2061 2098 4.021807 GGTTGGTTCACGATTATTGGGTTT 60.022 41.667 0.00 0.00 0.00 3.27
2062 2099 5.158494 GTTGGTTCACGATTATTGGGTTTC 58.842 41.667 0.00 0.00 0.00 2.78
2063 2100 4.658063 TGGTTCACGATTATTGGGTTTCT 58.342 39.130 0.00 0.00 0.00 2.52
2064 2101 4.698304 TGGTTCACGATTATTGGGTTTCTC 59.302 41.667 0.00 0.00 0.00 2.87
2065 2102 4.201783 GGTTCACGATTATTGGGTTTCTCG 60.202 45.833 0.00 0.00 0.00 4.04
2128 2165 9.842775 TTCTTCTCTCTATTCATTACATGCATT 57.157 29.630 0.00 0.00 0.00 3.56
2129 2166 9.486497 TCTTCTCTCTATTCATTACATGCATTC 57.514 33.333 0.00 0.00 0.00 2.67
2130 2167 9.269453 CTTCTCTCTATTCATTACATGCATTCA 57.731 33.333 0.00 0.00 0.00 2.57
2131 2168 8.828688 TCTCTCTATTCATTACATGCATTCAG 57.171 34.615 0.00 0.00 0.00 3.02
2132 2169 8.645110 TCTCTCTATTCATTACATGCATTCAGA 58.355 33.333 0.00 0.00 0.00 3.27
2133 2170 9.269453 CTCTCTATTCATTACATGCATTCAGAA 57.731 33.333 0.00 0.00 0.00 3.02
2134 2171 9.617523 TCTCTATTCATTACATGCATTCAGAAA 57.382 29.630 0.00 0.00 0.00 2.52
2167 2204 3.691118 GCAGTGAGCAATGATTCCACTAA 59.309 43.478 1.70 0.00 44.79 2.24
2183 2220 5.381757 TCCACTAATTATAGCGGCCAAATT 58.618 37.500 2.24 3.35 32.36 1.82
2190 2227 2.201921 TAGCGGCCAAATTTGTACCA 57.798 45.000 21.12 5.50 0.00 3.25
2221 2258 1.386533 GCCTTCTGATGACCATGGTG 58.613 55.000 25.52 7.57 0.00 4.17
2236 2273 2.262266 TGGTGATGGTCTATGTGGGA 57.738 50.000 0.00 0.00 0.00 4.37
2238 2275 3.122480 TGGTGATGGTCTATGTGGGAAT 58.878 45.455 0.00 0.00 0.00 3.01
2243 2282 1.760613 TGGTCTATGTGGGAATCGTCC 59.239 52.381 0.00 0.00 44.10 4.79
2292 2331 1.378531 GTGTGAAGCACTGACAACCA 58.621 50.000 0.00 0.00 44.41 3.67
2295 2334 0.176910 TGAAGCACTGACAACCACGA 59.823 50.000 0.00 0.00 0.00 4.35
2300 2339 2.823747 AGCACTGACAACCACGACTATA 59.176 45.455 0.00 0.00 0.00 1.31
2301 2340 3.119459 AGCACTGACAACCACGACTATAG 60.119 47.826 0.00 0.00 0.00 1.31
2320 2359 9.474313 GACTATAGGAAGATATGTCCTCAAGAT 57.526 37.037 7.67 0.73 42.02 2.40
2327 2366 7.011857 GGAAGATATGTCCTCAAGATTGTGTTC 59.988 40.741 0.00 0.00 31.94 3.18
2329 2368 3.744238 TGTCCTCAAGATTGTGTTCGA 57.256 42.857 0.00 0.00 0.00 3.71
2331 2370 4.058124 TGTCCTCAAGATTGTGTTCGAAG 58.942 43.478 0.00 0.00 0.00 3.79
2347 2386 0.596600 GAAGCACACTTCGTGTCCGA 60.597 55.000 0.00 0.00 43.92 4.55
2358 2397 0.815734 CGTGTCCGAGGTGATAACCT 59.184 55.000 0.00 0.00 44.06 3.50
2368 2407 5.178797 CGAGGTGATAACCTTTGTTCTGAT 58.821 41.667 2.26 0.00 40.86 2.90
2382 2421 5.560722 TGTTCTGATCTTTACTGGTTGGA 57.439 39.130 0.00 0.00 0.00 3.53
2385 2424 6.655003 TGTTCTGATCTTTACTGGTTGGATTC 59.345 38.462 0.00 0.00 0.00 2.52
2387 2426 6.778821 TCTGATCTTTACTGGTTGGATTCAA 58.221 36.000 0.00 0.00 0.00 2.69
2391 2430 8.956426 TGATCTTTACTGGTTGGATTCAATAAC 58.044 33.333 0.00 0.00 35.10 1.89
2398 2437 6.921307 ACTGGTTGGATTCAATAACGAAAAAC 59.079 34.615 0.00 0.00 35.10 2.43
2404 2443 6.041069 TGGATTCAATAACGAAAAACTTGGGT 59.959 34.615 0.00 0.00 0.00 4.51
2423 2462 7.505585 ACTTGGGTCATTATTTTCTTGAAGACA 59.494 33.333 0.00 0.00 0.00 3.41
2436 2475 5.809001 TCTTGAAGACATTGTATCCTTGCT 58.191 37.500 0.00 0.00 0.00 3.91
2466 2505 1.346722 ACCTTAGTTGGTTGGTCTCGG 59.653 52.381 0.00 0.00 36.89 4.63
2469 2508 1.927487 TAGTTGGTTGGTCTCGGCTA 58.073 50.000 0.00 0.00 0.00 3.93
2473 2512 1.271856 TGGTTGGTCTCGGCTATCAA 58.728 50.000 0.00 0.00 0.00 2.57
2478 2517 3.961480 TGGTCTCGGCTATCAATATGG 57.039 47.619 0.00 0.00 0.00 2.74
2483 2522 6.212589 TGGTCTCGGCTATCAATATGGAAATA 59.787 38.462 0.00 0.00 0.00 1.40
2490 2529 9.046296 CGGCTATCAATATGGAAATACTTATCC 57.954 37.037 0.00 0.00 36.21 2.59
2500 2539 6.591935 TGGAAATACTTATCCTGGTCATCAC 58.408 40.000 0.00 0.00 36.64 3.06
2504 2543 2.101582 ACTTATCCTGGTCATCACGAGC 59.898 50.000 0.00 0.00 42.75 5.03
2508 2547 1.893062 CTGGTCATCACGAGCTGGA 59.107 57.895 1.44 0.00 42.88 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.123273 AGCCTAACCCAATACCATCACT 58.877 45.455 0.00 0.00 0.00 3.41
1 2 3.577805 AGCCTAACCCAATACCATCAC 57.422 47.619 0.00 0.00 0.00 3.06
2 3 4.303794 ACTAGCCTAACCCAATACCATCA 58.696 43.478 0.00 0.00 0.00 3.07
3 4 4.347000 TGACTAGCCTAACCCAATACCATC 59.653 45.833 0.00 0.00 0.00 3.51
4 5 4.303794 TGACTAGCCTAACCCAATACCAT 58.696 43.478 0.00 0.00 0.00 3.55
5 6 3.726790 TGACTAGCCTAACCCAATACCA 58.273 45.455 0.00 0.00 0.00 3.25
6 7 4.976540 ATGACTAGCCTAACCCAATACC 57.023 45.455 0.00 0.00 0.00 2.73
7 8 6.456501 CACTATGACTAGCCTAACCCAATAC 58.543 44.000 0.00 0.00 0.00 1.89
8 9 5.542635 CCACTATGACTAGCCTAACCCAATA 59.457 44.000 0.00 0.00 0.00 1.90
9 10 4.348168 CCACTATGACTAGCCTAACCCAAT 59.652 45.833 0.00 0.00 0.00 3.16
10 11 3.709653 CCACTATGACTAGCCTAACCCAA 59.290 47.826 0.00 0.00 0.00 4.12
11 12 3.305720 CCACTATGACTAGCCTAACCCA 58.694 50.000 0.00 0.00 0.00 4.51
12 13 2.633481 CCCACTATGACTAGCCTAACCC 59.367 54.545 0.00 0.00 0.00 4.11
13 14 2.633481 CCCCACTATGACTAGCCTAACC 59.367 54.545 0.00 0.00 0.00 2.85
14 15 3.573695 TCCCCACTATGACTAGCCTAAC 58.426 50.000 0.00 0.00 0.00 2.34
15 16 3.206866 ACTCCCCACTATGACTAGCCTAA 59.793 47.826 0.00 0.00 0.00 2.69
16 17 2.789992 ACTCCCCACTATGACTAGCCTA 59.210 50.000 0.00 0.00 0.00 3.93
17 18 1.576272 ACTCCCCACTATGACTAGCCT 59.424 52.381 0.00 0.00 0.00 4.58
18 19 2.089600 ACTCCCCACTATGACTAGCC 57.910 55.000 0.00 0.00 0.00 3.93
19 20 4.216708 AGTTACTCCCCACTATGACTAGC 58.783 47.826 0.00 0.00 0.00 3.42
20 21 6.490721 CCTAAGTTACTCCCCACTATGACTAG 59.509 46.154 0.00 0.00 0.00 2.57
21 22 6.371278 CCTAAGTTACTCCCCACTATGACTA 58.629 44.000 0.00 0.00 0.00 2.59
22 23 5.209659 CCTAAGTTACTCCCCACTATGACT 58.790 45.833 0.00 0.00 0.00 3.41
23 24 4.202233 GCCTAAGTTACTCCCCACTATGAC 60.202 50.000 0.00 0.00 0.00 3.06
24 25 3.965347 GCCTAAGTTACTCCCCACTATGA 59.035 47.826 0.00 0.00 0.00 2.15
25 26 3.967987 AGCCTAAGTTACTCCCCACTATG 59.032 47.826 0.00 0.00 0.00 2.23
26 27 4.282292 AGCCTAAGTTACTCCCCACTAT 57.718 45.455 0.00 0.00 0.00 2.12
27 28 3.771071 AGCCTAAGTTACTCCCCACTA 57.229 47.619 0.00 0.00 0.00 2.74
28 29 2.644060 AGCCTAAGTTACTCCCCACT 57.356 50.000 0.00 0.00 0.00 4.00
29 30 3.132467 CACTAGCCTAAGTTACTCCCCAC 59.868 52.174 0.00 0.00 0.00 4.61
30 31 3.245875 ACACTAGCCTAAGTTACTCCCCA 60.246 47.826 0.00 0.00 0.00 4.96
31 32 3.372897 ACACTAGCCTAAGTTACTCCCC 58.627 50.000 0.00 0.00 0.00 4.81
32 33 4.021916 TGACACTAGCCTAAGTTACTCCC 58.978 47.826 0.00 0.00 0.00 4.30
33 34 5.127356 ACATGACACTAGCCTAAGTTACTCC 59.873 44.000 0.00 0.00 0.00 3.85
34 35 6.037098 CACATGACACTAGCCTAAGTTACTC 58.963 44.000 0.00 0.00 0.00 2.59
35 36 5.480772 ACACATGACACTAGCCTAAGTTACT 59.519 40.000 0.00 0.00 0.00 2.24
36 37 5.721232 ACACATGACACTAGCCTAAGTTAC 58.279 41.667 0.00 0.00 0.00 2.50
37 38 5.995565 ACACATGACACTAGCCTAAGTTA 57.004 39.130 0.00 0.00 0.00 2.24
38 39 4.891992 ACACATGACACTAGCCTAAGTT 57.108 40.909 0.00 0.00 0.00 2.66
39 40 5.656859 TCATACACATGACACTAGCCTAAGT 59.343 40.000 0.00 0.00 36.22 2.24
40 41 6.149129 TCATACACATGACACTAGCCTAAG 57.851 41.667 0.00 0.00 36.22 2.18
61 62 9.511272 TGAAGTTAGTAACATAGACTAGTGTCA 57.489 33.333 15.28 0.00 45.20 3.58
104 105 9.836864 TGCAATCATCTATGATACACTACTTTT 57.163 29.630 5.90 0.00 46.22 2.27
181 182 7.993183 AGAGGGTGTTTGAGGTAACATAATATG 59.007 37.037 0.00 0.00 39.93 1.78
182 183 8.102484 AGAGGGTGTTTGAGGTAACATAATAT 57.898 34.615 0.00 0.00 39.93 1.28
183 184 7.402071 AGAGAGGGTGTTTGAGGTAACATAATA 59.598 37.037 0.00 0.00 39.93 0.98
184 185 6.215636 AGAGAGGGTGTTTGAGGTAACATAAT 59.784 38.462 0.00 0.00 39.93 1.28
185 186 5.546499 AGAGAGGGTGTTTGAGGTAACATAA 59.454 40.000 0.00 0.00 39.93 1.90
186 187 5.091552 AGAGAGGGTGTTTGAGGTAACATA 58.908 41.667 0.00 0.00 39.93 2.29
187 188 3.910627 AGAGAGGGTGTTTGAGGTAACAT 59.089 43.478 0.00 0.00 39.93 2.71
188 189 3.314693 AGAGAGGGTGTTTGAGGTAACA 58.685 45.455 0.00 0.00 41.41 2.41
189 190 4.202326 TGAAGAGAGGGTGTTTGAGGTAAC 60.202 45.833 0.00 0.00 0.00 2.50
190 191 3.971305 TGAAGAGAGGGTGTTTGAGGTAA 59.029 43.478 0.00 0.00 0.00 2.85
191 192 3.583228 TGAAGAGAGGGTGTTTGAGGTA 58.417 45.455 0.00 0.00 0.00 3.08
192 193 2.408565 TGAAGAGAGGGTGTTTGAGGT 58.591 47.619 0.00 0.00 0.00 3.85
193 194 3.710209 ATGAAGAGAGGGTGTTTGAGG 57.290 47.619 0.00 0.00 0.00 3.86
194 195 7.693969 AATTAATGAAGAGAGGGTGTTTGAG 57.306 36.000 0.00 0.00 0.00 3.02
195 196 8.160765 TGTAATTAATGAAGAGAGGGTGTTTGA 58.839 33.333 0.00 0.00 0.00 2.69
196 197 8.335532 TGTAATTAATGAAGAGAGGGTGTTTG 57.664 34.615 0.00 0.00 0.00 2.93
197 198 8.960591 CATGTAATTAATGAAGAGAGGGTGTTT 58.039 33.333 0.00 0.00 0.00 2.83
198 199 7.067494 GCATGTAATTAATGAAGAGAGGGTGTT 59.933 37.037 10.14 0.00 0.00 3.32
199 200 6.543831 GCATGTAATTAATGAAGAGAGGGTGT 59.456 38.462 10.14 0.00 0.00 4.16
200 201 6.016777 GGCATGTAATTAATGAAGAGAGGGTG 60.017 42.308 10.14 0.00 0.00 4.61
201 202 6.064717 GGCATGTAATTAATGAAGAGAGGGT 58.935 40.000 10.14 0.00 0.00 4.34
202 203 6.016777 GTGGCATGTAATTAATGAAGAGAGGG 60.017 42.308 0.00 0.00 0.00 4.30
203 204 6.543465 TGTGGCATGTAATTAATGAAGAGAGG 59.457 38.462 0.00 0.00 0.00 3.69
204 205 7.558161 TGTGGCATGTAATTAATGAAGAGAG 57.442 36.000 0.00 0.00 0.00 3.20
205 206 9.625747 TTATGTGGCATGTAATTAATGAAGAGA 57.374 29.630 0.00 0.00 0.00 3.10
215 216 9.835389 ATTTGCTTAATTATGTGGCATGTAATT 57.165 25.926 18.02 18.02 33.81 1.40
216 217 9.835389 AATTTGCTTAATTATGTGGCATGTAAT 57.165 25.926 0.00 0.00 34.69 1.89
218 219 9.964303 CTAATTTGCTTAATTATGTGGCATGTA 57.036 29.630 0.00 0.00 37.89 2.29
219 220 8.477256 ACTAATTTGCTTAATTATGTGGCATGT 58.523 29.630 0.00 0.00 37.89 3.21
220 221 8.876275 ACTAATTTGCTTAATTATGTGGCATG 57.124 30.769 0.00 0.00 37.89 4.06
221 222 8.143835 GGACTAATTTGCTTAATTATGTGGCAT 58.856 33.333 0.00 0.00 37.89 4.40
222 223 7.341769 AGGACTAATTTGCTTAATTATGTGGCA 59.658 33.333 5.45 0.00 37.89 4.92
223 224 7.649306 CAGGACTAATTTGCTTAATTATGTGGC 59.351 37.037 5.45 0.00 37.89 5.01
224 225 8.902806 TCAGGACTAATTTGCTTAATTATGTGG 58.097 33.333 5.45 0.00 37.89 4.17
230 231 9.643693 CACATTTCAGGACTAATTTGCTTAATT 57.356 29.630 3.48 3.48 39.69 1.40
231 232 7.761249 GCACATTTCAGGACTAATTTGCTTAAT 59.239 33.333 0.00 0.00 35.58 1.40
232 233 7.039784 AGCACATTTCAGGACTAATTTGCTTAA 60.040 33.333 0.00 0.00 42.14 1.85
233 234 6.434028 AGCACATTTCAGGACTAATTTGCTTA 59.566 34.615 0.00 0.00 42.14 3.09
234 235 5.244626 AGCACATTTCAGGACTAATTTGCTT 59.755 36.000 0.00 0.00 42.14 3.91
235 236 4.768968 AGCACATTTCAGGACTAATTTGCT 59.231 37.500 0.00 0.00 40.83 3.91
236 237 5.064441 AGCACATTTCAGGACTAATTTGC 57.936 39.130 0.00 0.00 37.58 3.68
237 238 7.765307 ACATAGCACATTTCAGGACTAATTTG 58.235 34.615 0.00 0.00 0.00 2.32
238 239 7.944729 ACATAGCACATTTCAGGACTAATTT 57.055 32.000 0.00 0.00 0.00 1.82
239 240 7.944729 AACATAGCACATTTCAGGACTAATT 57.055 32.000 0.00 0.00 0.00 1.40
240 241 8.267894 AGTAACATAGCACATTTCAGGACTAAT 58.732 33.333 0.00 0.00 0.00 1.73
241 242 7.620880 AGTAACATAGCACATTTCAGGACTAA 58.379 34.615 0.00 0.00 0.00 2.24
242 243 7.182817 AGTAACATAGCACATTTCAGGACTA 57.817 36.000 0.00 0.00 0.00 2.59
243 244 6.054860 AGTAACATAGCACATTTCAGGACT 57.945 37.500 0.00 0.00 0.00 3.85
244 245 6.018669 GCTAGTAACATAGCACATTTCAGGAC 60.019 42.308 0.99 0.00 46.12 3.85
245 246 6.049149 GCTAGTAACATAGCACATTTCAGGA 58.951 40.000 0.99 0.00 46.12 3.86
246 247 6.292389 GCTAGTAACATAGCACATTTCAGG 57.708 41.667 0.99 0.00 46.12 3.86
257 258 5.050972 GCACCGCTTTAAGCTAGTAACATAG 60.051 44.000 15.29 1.40 39.60 2.23
258 259 4.807304 GCACCGCTTTAAGCTAGTAACATA 59.193 41.667 15.29 0.00 39.60 2.29
259 260 3.621715 GCACCGCTTTAAGCTAGTAACAT 59.378 43.478 15.29 0.00 39.60 2.71
260 261 2.997986 GCACCGCTTTAAGCTAGTAACA 59.002 45.455 15.29 0.00 39.60 2.41
261 262 3.259902 AGCACCGCTTTAAGCTAGTAAC 58.740 45.455 15.29 7.89 39.60 2.50
262 263 3.194968 AGAGCACCGCTTTAAGCTAGTAA 59.805 43.478 15.29 0.00 39.88 2.24
263 264 2.758979 AGAGCACCGCTTTAAGCTAGTA 59.241 45.455 15.29 0.00 39.88 1.82
264 265 1.550976 AGAGCACCGCTTTAAGCTAGT 59.449 47.619 15.29 9.30 39.88 2.57
265 266 2.301577 AGAGCACCGCTTTAAGCTAG 57.698 50.000 15.29 8.66 39.88 3.42
266 267 3.518590 GTTAGAGCACCGCTTTAAGCTA 58.481 45.455 15.29 0.00 39.88 3.32
267 268 2.347731 GTTAGAGCACCGCTTTAAGCT 58.652 47.619 15.29 0.00 39.88 3.74
268 269 1.060698 CGTTAGAGCACCGCTTTAAGC 59.939 52.381 6.92 6.92 39.88 3.09
269 270 1.659098 CCGTTAGAGCACCGCTTTAAG 59.341 52.381 0.00 0.00 39.88 1.85
270 271 1.273048 TCCGTTAGAGCACCGCTTTAA 59.727 47.619 0.00 0.00 39.88 1.52
271 272 0.889994 TCCGTTAGAGCACCGCTTTA 59.110 50.000 0.00 0.00 39.88 1.85
272 273 0.389948 CTCCGTTAGAGCACCGCTTT 60.390 55.000 0.00 0.00 39.88 3.51
273 274 1.215647 CTCCGTTAGAGCACCGCTT 59.784 57.895 0.00 0.00 39.88 4.68
274 275 2.885861 CTCCGTTAGAGCACCGCT 59.114 61.111 0.00 0.00 43.88 5.52
281 282 2.163818 TTTGGTGTGCTCCGTTAGAG 57.836 50.000 0.00 0.00 46.29 2.43
282 283 2.623878 TTTTGGTGTGCTCCGTTAGA 57.376 45.000 0.00 0.00 0.00 2.10
283 284 3.374058 CCTATTTTGGTGTGCTCCGTTAG 59.626 47.826 0.00 0.00 0.00 2.34
284 285 3.244630 ACCTATTTTGGTGTGCTCCGTTA 60.245 43.478 0.00 0.00 39.17 3.18
285 286 2.159382 CCTATTTTGGTGTGCTCCGTT 58.841 47.619 0.00 0.00 0.00 4.44
286 287 1.073284 ACCTATTTTGGTGTGCTCCGT 59.927 47.619 0.00 0.00 39.17 4.69
287 288 1.737793 GACCTATTTTGGTGTGCTCCG 59.262 52.381 0.00 0.00 41.00 4.63
288 289 2.749621 CTGACCTATTTTGGTGTGCTCC 59.250 50.000 0.00 0.00 41.00 4.70
289 290 3.674997 TCTGACCTATTTTGGTGTGCTC 58.325 45.455 0.00 0.00 41.00 4.26
290 291 3.788227 TCTGACCTATTTTGGTGTGCT 57.212 42.857 0.00 0.00 41.00 4.40
291 292 3.129287 CCATCTGACCTATTTTGGTGTGC 59.871 47.826 0.00 0.00 41.00 4.57
292 293 3.129287 GCCATCTGACCTATTTTGGTGTG 59.871 47.826 0.00 0.00 41.00 3.82
293 294 3.356290 GCCATCTGACCTATTTTGGTGT 58.644 45.455 0.00 0.00 41.00 4.16
294 295 2.355756 CGCCATCTGACCTATTTTGGTG 59.644 50.000 0.00 0.00 41.00 4.17
295 296 2.238646 TCGCCATCTGACCTATTTTGGT 59.761 45.455 0.00 0.00 44.10 3.67
296 297 2.614057 GTCGCCATCTGACCTATTTTGG 59.386 50.000 0.00 0.00 0.00 3.28
297 298 3.270027 TGTCGCCATCTGACCTATTTTG 58.730 45.455 0.00 0.00 35.46 2.44
298 299 3.197766 TCTGTCGCCATCTGACCTATTTT 59.802 43.478 0.00 0.00 35.46 1.82
299 300 2.766263 TCTGTCGCCATCTGACCTATTT 59.234 45.455 0.00 0.00 35.46 1.40
300 301 2.388735 TCTGTCGCCATCTGACCTATT 58.611 47.619 0.00 0.00 35.46 1.73
301 302 2.073252 TCTGTCGCCATCTGACCTAT 57.927 50.000 0.00 0.00 35.46 2.57
302 303 2.073252 ATCTGTCGCCATCTGACCTA 57.927 50.000 0.00 0.00 35.46 3.08
303 304 1.134580 CAATCTGTCGCCATCTGACCT 60.135 52.381 0.00 0.00 35.46 3.85
304 305 1.293924 CAATCTGTCGCCATCTGACC 58.706 55.000 0.00 0.00 35.46 4.02
305 306 1.662629 CACAATCTGTCGCCATCTGAC 59.337 52.381 0.00 0.00 36.88 3.51
306 307 2.008543 GCACAATCTGTCGCCATCTGA 61.009 52.381 0.00 0.00 0.00 3.27
307 308 0.376152 GCACAATCTGTCGCCATCTG 59.624 55.000 0.00 0.00 0.00 2.90
308 309 0.036105 TGCACAATCTGTCGCCATCT 60.036 50.000 0.00 0.00 0.00 2.90
309 310 0.097674 GTGCACAATCTGTCGCCATC 59.902 55.000 13.17 0.00 0.00 3.51
310 311 0.321919 AGTGCACAATCTGTCGCCAT 60.322 50.000 21.04 0.00 0.00 4.40
311 312 0.320050 TAGTGCACAATCTGTCGCCA 59.680 50.000 21.04 0.00 0.00 5.69
312 313 0.721718 GTAGTGCACAATCTGTCGCC 59.278 55.000 21.04 0.00 0.00 5.54
313 314 1.391485 CAGTAGTGCACAATCTGTCGC 59.609 52.381 21.04 0.00 0.00 5.19
355 356 4.586841 TGAGAACCAAACCTTAACCATTGG 59.413 41.667 0.00 0.00 46.14 3.16
356 357 5.782893 TGAGAACCAAACCTTAACCATTG 57.217 39.130 0.00 0.00 0.00 2.82
357 358 8.531146 CATTATGAGAACCAAACCTTAACCATT 58.469 33.333 0.00 0.00 0.00 3.16
358 359 7.124147 CCATTATGAGAACCAAACCTTAACCAT 59.876 37.037 0.00 0.00 0.00 3.55
359 360 6.435904 CCATTATGAGAACCAAACCTTAACCA 59.564 38.462 0.00 0.00 0.00 3.67
360 361 6.127451 CCCATTATGAGAACCAAACCTTAACC 60.127 42.308 0.00 0.00 0.00 2.85
361 362 6.661805 TCCCATTATGAGAACCAAACCTTAAC 59.338 38.462 0.00 0.00 0.00 2.01
362 363 6.795590 TCCCATTATGAGAACCAAACCTTAA 58.204 36.000 0.00 0.00 0.00 1.85
363 364 6.395780 TCCCATTATGAGAACCAAACCTTA 57.604 37.500 0.00 0.00 0.00 2.69
364 365 5.264395 CTCCCATTATGAGAACCAAACCTT 58.736 41.667 0.00 0.00 31.26 3.50
365 366 4.325344 CCTCCCATTATGAGAACCAAACCT 60.325 45.833 0.00 0.00 31.26 3.50
366 367 3.954258 CCTCCCATTATGAGAACCAAACC 59.046 47.826 0.00 0.00 31.26 3.27
367 368 4.855340 TCCTCCCATTATGAGAACCAAAC 58.145 43.478 0.00 0.00 31.26 2.93
368 369 4.540099 ACTCCTCCCATTATGAGAACCAAA 59.460 41.667 0.00 0.00 31.26 3.28
369 370 4.111577 ACTCCTCCCATTATGAGAACCAA 58.888 43.478 0.00 0.00 31.26 3.67
370 371 3.736094 ACTCCTCCCATTATGAGAACCA 58.264 45.455 0.00 0.00 31.26 3.67
371 372 5.367060 AGTTACTCCTCCCATTATGAGAACC 59.633 44.000 0.00 0.00 31.26 3.62
372 373 6.487299 AGTTACTCCTCCCATTATGAGAAC 57.513 41.667 0.00 0.00 31.26 3.01
373 374 7.202011 GCTAAGTTACTCCTCCCATTATGAGAA 60.202 40.741 0.00 0.00 31.26 2.87
374 375 6.267928 GCTAAGTTACTCCTCCCATTATGAGA 59.732 42.308 0.00 0.00 31.26 3.27
375 376 6.459923 GCTAAGTTACTCCTCCCATTATGAG 58.540 44.000 0.00 0.00 0.00 2.90
376 377 5.010719 CGCTAAGTTACTCCTCCCATTATGA 59.989 44.000 0.00 0.00 0.00 2.15
377 378 5.010719 TCGCTAAGTTACTCCTCCCATTATG 59.989 44.000 0.00 0.00 0.00 1.90
378 379 5.145564 TCGCTAAGTTACTCCTCCCATTAT 58.854 41.667 0.00 0.00 0.00 1.28
379 380 4.539726 TCGCTAAGTTACTCCTCCCATTA 58.460 43.478 0.00 0.00 0.00 1.90
380 381 3.371965 TCGCTAAGTTACTCCTCCCATT 58.628 45.455 0.00 0.00 0.00 3.16
381 382 2.959707 CTCGCTAAGTTACTCCTCCCAT 59.040 50.000 0.00 0.00 0.00 4.00
382 383 2.291411 ACTCGCTAAGTTACTCCTCCCA 60.291 50.000 0.00 0.00 33.03 4.37
383 384 2.377073 ACTCGCTAAGTTACTCCTCCC 58.623 52.381 0.00 0.00 33.03 4.30
384 385 5.771153 ATTACTCGCTAAGTTACTCCTCC 57.229 43.478 0.00 0.00 39.55 4.30
385 386 9.824534 GTTATATTACTCGCTAAGTTACTCCTC 57.175 37.037 0.00 0.00 39.55 3.71
386 387 8.502387 CGTTATATTACTCGCTAAGTTACTCCT 58.498 37.037 0.00 0.00 39.55 3.69
387 388 7.270151 GCGTTATATTACTCGCTAAGTTACTCC 59.730 40.741 0.00 0.00 44.28 3.85
388 389 7.006033 CGCGTTATATTACTCGCTAAGTTACTC 59.994 40.741 0.00 0.00 45.25 2.59
389 390 6.794158 CGCGTTATATTACTCGCTAAGTTACT 59.206 38.462 0.00 0.00 45.25 2.24
390 391 6.450410 GCGCGTTATATTACTCGCTAAGTTAC 60.450 42.308 18.78 0.00 45.72 2.50
391 392 5.565259 GCGCGTTATATTACTCGCTAAGTTA 59.435 40.000 18.78 0.00 45.72 2.24
392 393 4.380974 GCGCGTTATATTACTCGCTAAGTT 59.619 41.667 18.78 0.00 45.72 2.66
393 394 3.910767 GCGCGTTATATTACTCGCTAAGT 59.089 43.478 18.78 0.00 45.72 2.24
394 395 4.465966 GCGCGTTATATTACTCGCTAAG 57.534 45.455 18.78 3.46 45.72 2.18
399 400 1.336148 TGGGGCGCGTTATATTACTCG 60.336 52.381 8.43 0.15 0.00 4.18
400 401 2.443887 TGGGGCGCGTTATATTACTC 57.556 50.000 8.43 0.00 0.00 2.59
401 402 2.914695 TTGGGGCGCGTTATATTACT 57.085 45.000 8.43 0.00 0.00 2.24
402 403 4.248058 AGTATTGGGGCGCGTTATATTAC 58.752 43.478 8.43 4.20 0.00 1.89
403 404 4.540359 AGTATTGGGGCGCGTTATATTA 57.460 40.909 8.43 0.00 0.00 0.98
404 405 3.412237 AGTATTGGGGCGCGTTATATT 57.588 42.857 8.43 0.00 0.00 1.28
405 406 3.677976 GCTAGTATTGGGGCGCGTTATAT 60.678 47.826 8.43 0.00 0.00 0.86
406 407 2.353011 GCTAGTATTGGGGCGCGTTATA 60.353 50.000 8.43 0.00 0.00 0.98
407 408 1.607251 GCTAGTATTGGGGCGCGTTAT 60.607 52.381 8.43 0.00 0.00 1.89
408 409 0.249573 GCTAGTATTGGGGCGCGTTA 60.250 55.000 8.43 0.00 0.00 3.18
409 410 1.523032 GCTAGTATTGGGGCGCGTT 60.523 57.895 8.43 0.00 0.00 4.84
410 411 1.111116 TAGCTAGTATTGGGGCGCGT 61.111 55.000 8.43 0.00 0.00 6.01
411 412 0.032952 TTAGCTAGTATTGGGGCGCG 59.967 55.000 0.00 0.00 0.00 6.86
412 413 2.249844 TTTAGCTAGTATTGGGGCGC 57.750 50.000 0.00 0.00 0.00 6.53
413 414 2.548480 GCTTTTAGCTAGTATTGGGGCG 59.452 50.000 0.00 0.00 38.45 6.13
414 415 2.548480 CGCTTTTAGCTAGTATTGGGGC 59.452 50.000 0.00 0.00 39.60 5.80
415 416 3.560068 CACGCTTTTAGCTAGTATTGGGG 59.440 47.826 0.00 0.00 39.60 4.96
416 417 4.034048 CACACGCTTTTAGCTAGTATTGGG 59.966 45.833 0.00 0.00 39.60 4.12
417 418 4.494199 GCACACGCTTTTAGCTAGTATTGG 60.494 45.833 0.00 0.00 39.60 3.16
418 419 4.578601 GCACACGCTTTTAGCTAGTATTG 58.421 43.478 0.00 0.00 39.60 1.90
419 420 4.859629 GCACACGCTTTTAGCTAGTATT 57.140 40.909 0.00 0.00 39.60 1.89
433 434 3.058914 ACAGAAGAAAACATAGCACACGC 60.059 43.478 0.00 0.00 38.99 5.34
434 435 4.664139 CGACAGAAGAAAACATAGCACACG 60.664 45.833 0.00 0.00 0.00 4.49
435 436 4.702392 CGACAGAAGAAAACATAGCACAC 58.298 43.478 0.00 0.00 0.00 3.82
436 437 3.186409 GCGACAGAAGAAAACATAGCACA 59.814 43.478 0.00 0.00 0.00 4.57
437 438 3.186409 TGCGACAGAAGAAAACATAGCAC 59.814 43.478 0.00 0.00 0.00 4.40
438 439 3.398406 TGCGACAGAAGAAAACATAGCA 58.602 40.909 0.00 0.00 0.00 3.49
439 440 4.151798 GTTGCGACAGAAGAAAACATAGC 58.848 43.478 0.00 0.00 0.00 2.97
440 441 4.386230 CGTTGCGACAGAAGAAAACATAG 58.614 43.478 4.64 0.00 0.00 2.23
441 442 3.363575 GCGTTGCGACAGAAGAAAACATA 60.364 43.478 4.64 0.00 0.00 2.29
442 443 2.602217 GCGTTGCGACAGAAGAAAACAT 60.602 45.455 4.64 0.00 0.00 2.71
443 444 1.267832 GCGTTGCGACAGAAGAAAACA 60.268 47.619 4.64 0.00 0.00 2.83
444 445 1.267832 TGCGTTGCGACAGAAGAAAAC 60.268 47.619 4.64 0.00 0.00 2.43
445 446 1.010580 TGCGTTGCGACAGAAGAAAA 58.989 45.000 4.64 0.00 0.00 2.29
446 447 0.303493 GTGCGTTGCGACAGAAGAAA 59.697 50.000 4.64 0.00 0.00 2.52
447 448 0.808060 TGTGCGTTGCGACAGAAGAA 60.808 50.000 4.64 0.00 0.00 2.52
448 449 1.215014 CTGTGCGTTGCGACAGAAGA 61.215 55.000 4.64 0.00 38.75 2.87
449 450 1.202568 CTGTGCGTTGCGACAGAAG 59.797 57.895 4.64 0.00 38.75 2.85
450 451 1.227118 TCTGTGCGTTGCGACAGAA 60.227 52.632 16.24 0.00 40.61 3.02
451 452 1.949133 GTCTGTGCGTTGCGACAGA 60.949 57.895 15.24 15.24 40.96 3.41
452 453 1.880601 GAGTCTGTGCGTTGCGACAG 61.881 60.000 4.64 12.21 38.25 3.51
453 454 1.949133 GAGTCTGTGCGTTGCGACA 60.949 57.895 4.64 0.00 0.00 4.35
454 455 1.215655 AAGAGTCTGTGCGTTGCGAC 61.216 55.000 0.00 0.00 0.00 5.19
455 456 0.529773 AAAGAGTCTGTGCGTTGCGA 60.530 50.000 0.00 0.00 0.00 5.10
456 457 0.111089 GAAAGAGTCTGTGCGTTGCG 60.111 55.000 0.00 0.00 0.00 4.85
457 458 0.111089 CGAAAGAGTCTGTGCGTTGC 60.111 55.000 0.00 0.00 0.00 4.17
458 459 1.209128 ACGAAAGAGTCTGTGCGTTG 58.791 50.000 8.77 0.00 0.00 4.10
459 460 1.935933 AACGAAAGAGTCTGTGCGTT 58.064 45.000 17.15 17.15 37.17 4.84
460 461 2.787601 TAACGAAAGAGTCTGTGCGT 57.212 45.000 8.77 8.77 0.00 5.24
461 462 5.756950 TTATTAACGAAAGAGTCTGTGCG 57.243 39.130 0.00 0.45 0.00 5.34
462 463 9.474249 GTTATTTATTAACGAAAGAGTCTGTGC 57.526 33.333 0.00 0.00 31.42 4.57
463 464 9.968743 GGTTATTTATTAACGAAAGAGTCTGTG 57.031 33.333 0.00 0.00 41.01 3.66
464 465 9.715121 TGGTTATTTATTAACGAAAGAGTCTGT 57.285 29.630 0.00 0.00 41.01 3.41
491 492 2.990514 GCAATTGACCGCGGTTATTTTT 59.009 40.909 34.65 18.52 0.00 1.94
492 493 2.601804 GCAATTGACCGCGGTTATTTT 58.398 42.857 34.65 21.04 0.00 1.82
493 494 1.135228 GGCAATTGACCGCGGTTATTT 60.135 47.619 34.65 26.40 0.00 1.40
494 495 0.454196 GGCAATTGACCGCGGTTATT 59.546 50.000 34.65 28.82 0.00 1.40
495 496 1.711060 CGGCAATTGACCGCGGTTAT 61.711 55.000 34.65 24.95 44.90 1.89
496 497 2.392181 CGGCAATTGACCGCGGTTA 61.392 57.895 34.65 27.43 44.90 2.85
497 498 3.732892 CGGCAATTGACCGCGGTT 61.733 61.111 34.65 14.85 44.90 4.44
503 504 2.640581 ATAGGGGGCGGCAATTGACC 62.641 60.000 12.47 9.15 0.00 4.02
504 505 0.755327 AATAGGGGGCGGCAATTGAC 60.755 55.000 12.47 5.09 0.00 3.18
505 506 0.754957 CAATAGGGGGCGGCAATTGA 60.755 55.000 12.47 0.00 30.77 2.57
506 507 1.741525 CAATAGGGGGCGGCAATTG 59.258 57.895 12.47 10.80 0.00 2.32
507 508 2.133641 GCAATAGGGGGCGGCAATT 61.134 57.895 12.47 1.68 0.00 2.32
508 509 2.521708 GCAATAGGGGGCGGCAAT 60.522 61.111 12.47 0.00 0.00 3.56
509 510 4.832088 GGCAATAGGGGGCGGCAA 62.832 66.667 12.47 0.00 0.00 4.52
513 514 4.169696 TCGTGGCAATAGGGGGCG 62.170 66.667 0.00 0.00 0.00 6.13
514 515 2.203209 CTCGTGGCAATAGGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
515 516 1.146263 GACTCGTGGCAATAGGGGG 59.854 63.158 0.00 0.00 0.00 5.40
516 517 1.146263 GGACTCGTGGCAATAGGGG 59.854 63.158 0.00 0.00 0.00 4.79
517 518 0.105039 GAGGACTCGTGGCAATAGGG 59.895 60.000 0.00 0.00 0.00 3.53
518 519 0.249073 CGAGGACTCGTGGCAATAGG 60.249 60.000 13.23 0.00 46.99 2.57
519 520 3.258225 CGAGGACTCGTGGCAATAG 57.742 57.895 13.23 0.00 46.99 1.73
529 530 0.670854 GAAGGTTGGCACGAGGACTC 60.671 60.000 0.00 0.00 0.00 3.36
530 531 1.122019 AGAAGGTTGGCACGAGGACT 61.122 55.000 0.00 0.00 0.00 3.85
531 532 0.606604 TAGAAGGTTGGCACGAGGAC 59.393 55.000 0.00 0.00 0.00 3.85
532 533 0.895530 CTAGAAGGTTGGCACGAGGA 59.104 55.000 0.00 0.00 0.00 3.71
533 534 0.895530 TCTAGAAGGTTGGCACGAGG 59.104 55.000 0.00 0.00 0.00 4.63
534 535 1.737363 GCTCTAGAAGGTTGGCACGAG 60.737 57.143 0.00 0.00 0.00 4.18
535 536 0.246635 GCTCTAGAAGGTTGGCACGA 59.753 55.000 0.00 0.00 0.00 4.35
536 537 0.037326 TGCTCTAGAAGGTTGGCACG 60.037 55.000 0.00 0.00 0.00 5.34
537 538 1.807142 GTTGCTCTAGAAGGTTGGCAC 59.193 52.381 1.86 0.00 0.00 5.01
538 539 1.271379 GGTTGCTCTAGAAGGTTGGCA 60.271 52.381 0.00 0.00 0.00 4.92
539 540 1.454201 GGTTGCTCTAGAAGGTTGGC 58.546 55.000 0.00 0.00 0.00 4.52
540 541 1.340114 GGGGTTGCTCTAGAAGGTTGG 60.340 57.143 0.00 0.00 0.00 3.77
541 542 1.676014 CGGGGTTGCTCTAGAAGGTTG 60.676 57.143 0.00 0.00 0.00 3.77
542 543 0.613777 CGGGGTTGCTCTAGAAGGTT 59.386 55.000 0.00 0.00 0.00 3.50
543 544 1.900545 GCGGGGTTGCTCTAGAAGGT 61.901 60.000 0.00 0.00 0.00 3.50
544 545 1.153349 GCGGGGTTGCTCTAGAAGG 60.153 63.158 0.00 0.00 0.00 3.46
545 546 0.250513 AAGCGGGGTTGCTCTAGAAG 59.749 55.000 0.00 0.00 46.60 2.85
546 547 0.690762 AAAGCGGGGTTGCTCTAGAA 59.309 50.000 0.00 0.00 46.60 2.10
547 548 0.249398 GAAAGCGGGGTTGCTCTAGA 59.751 55.000 0.00 0.00 46.60 2.43
590 591 2.649129 GCACTTTCCATGCACCCCC 61.649 63.158 0.00 0.00 42.88 5.40
594 600 2.126346 GCCGCACTTTCCATGCAC 60.126 61.111 0.00 0.00 43.57 4.57
609 615 2.420058 ATAGTTAGGTGTTGCAGGCC 57.580 50.000 0.00 0.00 0.00 5.19
617 623 5.593679 ATGAACACGCTATAGTTAGGTGT 57.406 39.130 12.25 12.25 39.47 4.16
663 669 1.133458 GTAAGAAGCTGCGCAGTGC 59.867 57.895 35.80 25.03 46.70 4.40
664 670 0.441533 CAGTAAGAAGCTGCGCAGTG 59.558 55.000 35.80 20.79 0.00 3.66
727 734 3.057386 TGTTCTTGTAGTATGCGTCGGAA 60.057 43.478 0.00 0.00 0.00 4.30
730 737 4.030306 GTCTTGTTCTTGTAGTATGCGTCG 59.970 45.833 0.00 0.00 0.00 5.12
731 738 4.030306 CGTCTTGTTCTTGTAGTATGCGTC 59.970 45.833 0.00 0.00 0.00 5.19
774 787 4.571984 GTGTCCCGTGTGTTAAGTTTACTT 59.428 41.667 0.29 0.29 39.85 2.24
776 789 3.060339 CGTGTCCCGTGTGTTAAGTTTAC 60.060 47.826 0.00 0.00 0.00 2.01
827 840 0.958091 TTGACAATTTCTGGCCGTGG 59.042 50.000 0.00 0.00 28.17 4.94
830 843 1.200020 GTCCTTGACAATTTCTGGCCG 59.800 52.381 0.00 0.00 32.09 6.13
929 952 2.699954 GAGTGCCGAATTCTTCTTCCA 58.300 47.619 3.52 0.00 0.00 3.53
1509 1541 1.672854 CGTGGCGAAGATGGACCCTA 61.673 60.000 0.00 0.00 0.00 3.53
1565 1597 6.086765 CAGAACAACGAATTAACAATCACAGC 59.913 38.462 0.00 0.00 0.00 4.40
1568 1600 7.481798 GGATCAGAACAACGAATTAACAATCAC 59.518 37.037 0.00 0.00 0.00 3.06
1696 1732 4.755123 AGGCGAATCCACTATTTATTTCCG 59.245 41.667 0.00 0.00 37.29 4.30
1708 1744 2.037144 TCCCTAGTTAGGCGAATCCAC 58.963 52.381 0.00 0.00 42.26 4.02
1716 1752 0.177373 CCAACGGTCCCTAGTTAGGC 59.823 60.000 0.00 0.00 42.26 3.93
1745 1781 2.870411 GAGCGACTTTGGTTGTACTGTT 59.130 45.455 0.00 0.00 0.00 3.16
1746 1782 2.159014 TGAGCGACTTTGGTTGTACTGT 60.159 45.455 0.00 0.00 0.00 3.55
1755 1791 1.390123 CGTGTATGTGAGCGACTTTGG 59.610 52.381 0.00 0.00 0.00 3.28
1757 1793 2.717580 TCGTGTATGTGAGCGACTTT 57.282 45.000 0.00 0.00 0.00 2.66
1763 1799 4.174009 AGTGTATGTTCGTGTATGTGAGC 58.826 43.478 0.00 0.00 0.00 4.26
1767 1803 5.183331 AGAGTGAGTGTATGTTCGTGTATGT 59.817 40.000 0.00 0.00 0.00 2.29
1788 1824 0.023732 CGTGCGTGCGTTCATAAGAG 59.976 55.000 0.00 0.00 0.00 2.85
1791 1827 0.709467 GTACGTGCGTGCGTTCATAA 59.291 50.000 11.14 0.00 43.04 1.90
1792 1828 0.386985 TGTACGTGCGTGCGTTCATA 60.387 50.000 11.14 0.00 43.04 2.15
1799 1835 1.143969 GGTAGGATGTACGTGCGTGC 61.144 60.000 9.30 9.30 0.00 5.34
1802 1838 1.311859 TAGGGTAGGATGTACGTGCG 58.688 55.000 0.00 0.00 0.00 5.34
1806 1842 3.057456 GTGCTCATAGGGTAGGATGTACG 60.057 52.174 0.00 0.00 0.00 3.67
1809 1845 3.046283 TGTGCTCATAGGGTAGGATGT 57.954 47.619 0.00 0.00 0.00 3.06
1812 1848 2.609747 GGATGTGCTCATAGGGTAGGA 58.390 52.381 0.32 0.00 34.06 2.94
1814 1850 2.230025 CTCGGATGTGCTCATAGGGTAG 59.770 54.545 0.32 0.00 34.06 3.18
1829 1866 1.890894 CCGGTTCAGTGTCTCGGAT 59.109 57.895 12.82 0.00 42.94 4.18
1843 1880 1.327303 TCTCAAAATGCTTTGCCGGT 58.673 45.000 1.90 0.00 41.53 5.28
1856 1893 7.397892 TGTGGTGACTTTGTAAAATCTCAAA 57.602 32.000 0.00 0.00 33.44 2.69
1868 1905 1.081242 GGCGCATGTGGTGACTTTG 60.081 57.895 10.83 0.00 30.08 2.77
1869 1906 1.228245 AGGCGCATGTGGTGACTTT 60.228 52.632 10.83 0.00 45.26 2.66
1888 1925 1.080093 GATGTTCCCGTCGACTGCA 60.080 57.895 14.70 5.52 0.00 4.41
1904 1941 5.943416 CGATATTCCTACACTGAGAGGAGAT 59.057 44.000 0.00 4.04 42.80 2.75
1911 1948 3.570125 TCTGGCGATATTCCTACACTGAG 59.430 47.826 0.00 0.00 0.00 3.35
1912 1949 3.562182 TCTGGCGATATTCCTACACTGA 58.438 45.455 0.00 0.00 0.00 3.41
1915 1952 3.060602 GCTTCTGGCGATATTCCTACAC 58.939 50.000 0.00 0.00 0.00 2.90
1918 1955 2.609747 AGGCTTCTGGCGATATTCCTA 58.390 47.619 0.00 0.00 44.18 2.94
1920 1957 3.402628 TTAGGCTTCTGGCGATATTCC 57.597 47.619 0.00 0.00 44.18 3.01
1924 1961 3.945346 TGTTTTTAGGCTTCTGGCGATA 58.055 40.909 0.00 0.00 44.18 2.92
1939 1976 8.647226 GCTCGCATTATTTCTACATTTGTTTTT 58.353 29.630 0.00 0.00 0.00 1.94
1940 1977 7.812191 TGCTCGCATTATTTCTACATTTGTTTT 59.188 29.630 0.00 0.00 0.00 2.43
1949 1986 5.119279 ACATCGATGCTCGCATTATTTCTAC 59.881 40.000 25.11 0.00 40.21 2.59
1950 1987 5.230182 ACATCGATGCTCGCATTATTTCTA 58.770 37.500 25.11 0.00 40.21 2.10
1952 1989 4.084380 TGACATCGATGCTCGCATTATTTC 60.084 41.667 25.11 10.77 40.21 2.17
1955 1992 3.030668 TGACATCGATGCTCGCATTAT 57.969 42.857 25.11 1.94 40.21 1.28
1963 2000 5.423015 AGTCATAAACTTGACATCGATGCT 58.577 37.500 25.11 12.36 46.81 3.79
1964 2001 5.725110 AGTCATAAACTTGACATCGATGC 57.275 39.130 25.11 17.40 46.81 3.91
1982 2019 3.160585 CCACCTGGGCTCAAGTCA 58.839 61.111 0.00 0.00 0.00 3.41
2003 2040 7.067496 TGGTTAAGAGGACATTGATATCTCC 57.933 40.000 3.98 2.48 0.00 3.71
2005 2042 7.293299 TGGATGGTTAAGAGGACATTGATATCT 59.707 37.037 3.98 0.00 0.00 1.98
2009 2046 5.715439 TGGATGGTTAAGAGGACATTGAT 57.285 39.130 0.00 0.00 0.00 2.57
2013 2050 6.831664 ATAGTTGGATGGTTAAGAGGACAT 57.168 37.500 0.00 0.00 0.00 3.06
2031 2068 7.497909 CCAATAATCGTGAACCAACCTATAGTT 59.502 37.037 0.00 0.00 40.16 2.24
2032 2069 6.990349 CCAATAATCGTGAACCAACCTATAGT 59.010 38.462 0.00 0.00 0.00 2.12
2033 2070 6.426937 CCCAATAATCGTGAACCAACCTATAG 59.573 42.308 0.00 0.00 0.00 1.31
2034 2071 6.126710 ACCCAATAATCGTGAACCAACCTATA 60.127 38.462 0.00 0.00 0.00 1.31
2035 2072 5.130350 CCCAATAATCGTGAACCAACCTAT 58.870 41.667 0.00 0.00 0.00 2.57
2036 2073 4.019141 ACCCAATAATCGTGAACCAACCTA 60.019 41.667 0.00 0.00 0.00 3.08
2037 2074 3.245122 ACCCAATAATCGTGAACCAACCT 60.245 43.478 0.00 0.00 0.00 3.50
2038 2075 3.086282 ACCCAATAATCGTGAACCAACC 58.914 45.455 0.00 0.00 0.00 3.77
2061 2098 2.940994 TGTTTGGTTTCATCCCGAGA 57.059 45.000 0.00 0.00 0.00 4.04
2062 2099 4.519540 AATTGTTTGGTTTCATCCCGAG 57.480 40.909 0.00 0.00 0.00 4.63
2063 2100 4.586841 AGAAATTGTTTGGTTTCATCCCGA 59.413 37.500 0.00 0.00 36.92 5.14
2064 2101 4.881920 AGAAATTGTTTGGTTTCATCCCG 58.118 39.130 0.00 0.00 36.92 5.14
2065 2102 5.237815 GGAGAAATTGTTTGGTTTCATCCC 58.762 41.667 0.00 0.00 36.92 3.85
2145 2182 2.089980 AGTGGAATCATTGCTCACTGC 58.910 47.619 0.00 0.00 37.31 4.40
2146 2183 6.446781 AATTAGTGGAATCATTGCTCACTG 57.553 37.500 0.00 0.00 38.84 3.66
2147 2184 9.499479 CTATAATTAGTGGAATCATTGCTCACT 57.501 33.333 0.00 0.00 41.02 3.41
2167 2204 4.890581 TGGTACAAATTTGGCCGCTATAAT 59.109 37.500 21.74 0.00 31.92 1.28
2198 2235 2.514824 GGTCATCAGAAGGCCGGC 60.515 66.667 21.18 21.18 0.00 6.13
2200 2237 0.816825 CCATGGTCATCAGAAGGCCG 60.817 60.000 2.57 0.00 0.00 6.13
2221 2258 3.555168 GGACGATTCCCACATAGACCATC 60.555 52.174 0.00 0.00 35.57 3.51
2236 2273 1.815421 GCAGATGCGTGGGACGATT 60.815 57.895 0.00 0.00 46.05 3.34
2238 2275 2.004808 CTAGCAGATGCGTGGGACGA 62.005 60.000 0.00 0.00 46.05 4.20
2274 2313 1.378531 GTGGTTGTCAGTGCTTCACA 58.621 50.000 0.00 0.00 36.74 3.58
2284 2323 4.338012 TCTTCCTATAGTCGTGGTTGTCA 58.662 43.478 0.00 0.00 0.00 3.58
2292 2331 6.780901 TGAGGACATATCTTCCTATAGTCGT 58.219 40.000 2.80 0.00 44.03 4.34
2295 2334 9.836179 AATCTTGAGGACATATCTTCCTATAGT 57.164 33.333 2.80 0.00 44.03 2.12
2300 2339 6.157645 ACACAATCTTGAGGACATATCTTCCT 59.842 38.462 2.45 2.45 46.87 3.36
2301 2340 6.352516 ACACAATCTTGAGGACATATCTTCC 58.647 40.000 0.00 0.00 29.81 3.46
2353 2392 7.514721 ACCAGTAAAGATCAGAACAAAGGTTA 58.485 34.615 0.00 0.00 37.36 2.85
2358 2397 6.361433 TCCAACCAGTAAAGATCAGAACAAA 58.639 36.000 0.00 0.00 0.00 2.83
2368 2407 7.162761 TCGTTATTGAATCCAACCAGTAAAGA 58.837 34.615 0.00 0.00 34.72 2.52
2382 2421 7.045126 TGACCCAAGTTTTTCGTTATTGAAT 57.955 32.000 0.00 0.00 0.00 2.57
2385 2424 8.980143 ATAATGACCCAAGTTTTTCGTTATTG 57.020 30.769 0.00 0.00 29.63 1.90
2387 2426 9.990360 AAAATAATGACCCAAGTTTTTCGTTAT 57.010 25.926 0.00 0.00 33.50 1.89
2391 2430 8.487176 CAAGAAAATAATGACCCAAGTTTTTCG 58.513 33.333 0.00 0.00 36.94 3.46
2398 2437 7.885297 TGTCTTCAAGAAAATAATGACCCAAG 58.115 34.615 0.00 0.00 0.00 3.61
2423 2462 6.051717 GTGAGTACATCAGCAAGGATACAAT 58.948 40.000 0.00 0.00 39.07 2.71
2436 2475 5.512404 CCAACCAACTAAGGTGAGTACATCA 60.512 44.000 0.00 0.00 42.25 3.07
2469 2508 9.965902 GACCAGGATAAGTATTTCCATATTGAT 57.034 33.333 0.00 0.00 34.27 2.57
2473 2512 9.116080 TGATGACCAGGATAAGTATTTCCATAT 57.884 33.333 0.00 0.00 34.27 1.78
2478 2517 6.513180 TCGTGATGACCAGGATAAGTATTTC 58.487 40.000 0.00 0.00 35.02 2.17
2483 2522 2.101582 GCTCGTGATGACCAGGATAAGT 59.898 50.000 0.00 0.00 38.77 2.24
2490 2529 0.459237 GTCCAGCTCGTGATGACCAG 60.459 60.000 3.98 0.00 0.00 4.00
2500 2539 1.869574 CGTCGTCATGTCCAGCTCG 60.870 63.158 0.00 0.00 0.00 5.03
2504 2543 1.446099 CCACCGTCGTCATGTCCAG 60.446 63.158 0.00 0.00 0.00 3.86
2508 2547 3.986006 ACGCCACCGTCGTCATGT 61.986 61.111 0.00 0.00 46.39 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.