Multiple sequence alignment - TraesCS5D01G395800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G395800 chr5D 100.000 2531 0 0 1 2531 463376205 463373675 0.000000e+00 4674.0
1 TraesCS5D01G395800 chr5D 87.536 1043 73 27 1091 2122 463357569 463356573 0.000000e+00 1153.0
2 TraesCS5D01G395800 chr5D 88.921 686 61 11 860 1536 463403771 463403092 0.000000e+00 832.0
3 TraesCS5D01G395800 chr5D 82.494 417 36 16 2121 2531 463355715 463355330 5.220000e-87 331.0
4 TraesCS5D01G395800 chr5D 85.024 207 18 9 860 1059 463357760 463357560 5.520000e-47 198.0
5 TraesCS5D01G395800 chrUn 93.500 1323 73 8 381 1699 295600847 295599534 0.000000e+00 1954.0
6 TraesCS5D01G395800 chrUn 93.500 1323 73 8 381 1699 310496663 310497976 0.000000e+00 1954.0
7 TraesCS5D01G395800 chr5B 93.500 1323 73 8 381 1699 570153166 570151853 0.000000e+00 1954.0
8 TraesCS5D01G395800 chr5B 89.736 682 51 13 868 1536 570175616 570174941 0.000000e+00 854.0
9 TraesCS5D01G395800 chr5B 96.875 32 1 0 1946 1977 439259650 439259681 1.000000e-03 54.7
10 TraesCS5D01G395800 chr5A 94.401 1018 54 1 543 1557 583616063 583615046 0.000000e+00 1561.0
11 TraesCS5D01G395800 chr5A 88.837 851 71 15 859 1699 583608693 583607857 0.000000e+00 1024.0
12 TraesCS5D01G395800 chr5A 87.608 694 64 12 860 1536 583627901 583627213 0.000000e+00 785.0
13 TraesCS5D01G395800 chr5A 91.573 534 33 9 2005 2531 583612060 583611532 0.000000e+00 726.0
14 TraesCS5D01G395800 chr5A 85.676 377 26 7 1555 1928 583614714 583614363 3.080000e-99 372.0
15 TraesCS5D01G395800 chr5A 82.836 134 23 0 246 379 546844862 546844995 1.230000e-23 121.0
16 TraesCS5D01G395800 chr5A 88.060 67 8 0 1934 2000 583612166 583612100 2.090000e-11 80.5
17 TraesCS5D01G395800 chr3B 91.935 372 29 1 8 379 568524269 568524639 1.040000e-143 520.0
18 TraesCS5D01G395800 chr1D 81.457 302 31 13 103 379 464792021 464792322 9.110000e-55 224.0
19 TraesCS5D01G395800 chr1B 84.163 221 34 1 159 379 525805622 525805403 1.970000e-51 213.0
20 TraesCS5D01G395800 chr1A 81.356 177 32 1 204 379 578558969 578559145 2.620000e-30 143.0
21 TraesCS5D01G395800 chr2A 86.400 125 16 1 217 341 45100228 45100105 4.390000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G395800 chr5D 463373675 463376205 2530 True 4674.000000 4674 100.0000 1 2531 1 chr5D.!!$R1 2530
1 TraesCS5D01G395800 chr5D 463403092 463403771 679 True 832.000000 832 88.9210 860 1536 1 chr5D.!!$R2 676
2 TraesCS5D01G395800 chr5D 463355330 463357760 2430 True 560.666667 1153 85.0180 860 2531 3 chr5D.!!$R3 1671
3 TraesCS5D01G395800 chrUn 295599534 295600847 1313 True 1954.000000 1954 93.5000 381 1699 1 chrUn.!!$R1 1318
4 TraesCS5D01G395800 chrUn 310496663 310497976 1313 False 1954.000000 1954 93.5000 381 1699 1 chrUn.!!$F1 1318
5 TraesCS5D01G395800 chr5B 570151853 570153166 1313 True 1954.000000 1954 93.5000 381 1699 1 chr5B.!!$R1 1318
6 TraesCS5D01G395800 chr5B 570174941 570175616 675 True 854.000000 854 89.7360 868 1536 1 chr5B.!!$R2 668
7 TraesCS5D01G395800 chr5A 583627213 583627901 688 True 785.000000 785 87.6080 860 1536 1 chr5A.!!$R1 676
8 TraesCS5D01G395800 chr5A 583607857 583616063 8206 True 752.700000 1561 89.7094 543 2531 5 chr5A.!!$R2 1988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.035056 CGCCAACTTTCCAGGAGGAT 60.035 55.0 0.0 0.0 45.26 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 9052 0.319555 CCGTACCATCATAGCACGGG 60.32 60.0 3.6 0.0 46.43 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.778386 CGTACTAGTTCATGAATACATCAAGC 58.222 38.462 12.12 0.00 42.54 4.01
26 27 7.096023 CGTACTAGTTCATGAATACATCAAGCC 60.096 40.741 12.12 0.00 42.54 4.35
27 28 6.653020 ACTAGTTCATGAATACATCAAGCCA 58.347 36.000 12.12 0.00 42.54 4.75
28 29 7.285566 ACTAGTTCATGAATACATCAAGCCAT 58.714 34.615 12.12 0.00 42.54 4.40
29 30 6.630444 AGTTCATGAATACATCAAGCCATC 57.370 37.500 12.12 0.00 42.54 3.51
30 31 5.533903 AGTTCATGAATACATCAAGCCATCC 59.466 40.000 12.12 0.00 42.54 3.51
31 32 5.051409 TCATGAATACATCAAGCCATCCA 57.949 39.130 0.00 0.00 42.54 3.41
32 33 5.637127 TCATGAATACATCAAGCCATCCAT 58.363 37.500 0.00 0.00 42.54 3.41
33 34 5.475564 TCATGAATACATCAAGCCATCCATG 59.524 40.000 0.00 0.00 42.54 3.66
34 35 4.795469 TGAATACATCAAGCCATCCATGT 58.205 39.130 0.00 0.00 34.30 3.21
35 36 5.939447 TGAATACATCAAGCCATCCATGTA 58.061 37.500 0.00 0.00 36.43 2.29
36 37 5.764686 TGAATACATCAAGCCATCCATGTAC 59.235 40.000 0.00 0.00 35.16 2.90
37 38 2.564771 ACATCAAGCCATCCATGTACG 58.435 47.619 0.00 0.00 0.00 3.67
38 39 2.092968 ACATCAAGCCATCCATGTACGT 60.093 45.455 0.00 0.00 0.00 3.57
39 40 2.309528 TCAAGCCATCCATGTACGTC 57.690 50.000 0.00 0.00 0.00 4.34
40 41 1.134521 TCAAGCCATCCATGTACGTCC 60.135 52.381 0.00 0.00 0.00 4.79
41 42 0.179084 AAGCCATCCATGTACGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
42 43 1.143183 GCCATCCATGTACGTCCGT 59.857 57.895 0.00 0.00 0.00 4.69
43 44 1.151777 GCCATCCATGTACGTCCGTG 61.152 60.000 1.98 0.00 0.00 4.94
44 45 0.174845 CCATCCATGTACGTCCGTGT 59.825 55.000 1.98 0.00 0.00 4.49
45 46 1.556564 CATCCATGTACGTCCGTGTC 58.443 55.000 1.98 0.00 0.00 3.67
46 47 1.134367 CATCCATGTACGTCCGTGTCT 59.866 52.381 1.98 0.00 0.00 3.41
47 48 1.250328 TCCATGTACGTCCGTGTCTT 58.750 50.000 1.98 0.00 0.00 3.01
48 49 1.200716 TCCATGTACGTCCGTGTCTTC 59.799 52.381 1.98 0.00 0.00 2.87
49 50 1.625616 CATGTACGTCCGTGTCTTCC 58.374 55.000 1.98 0.00 0.00 3.46
50 51 0.169672 ATGTACGTCCGTGTCTTCCG 59.830 55.000 1.98 0.00 0.00 4.30
51 52 1.154150 GTACGTCCGTGTCTTCCGG 60.154 63.158 0.00 0.00 46.83 5.14
52 53 1.600636 TACGTCCGTGTCTTCCGGT 60.601 57.895 0.00 0.00 45.63 5.28
53 54 1.855213 TACGTCCGTGTCTTCCGGTG 61.855 60.000 0.00 0.00 45.63 4.94
54 55 2.048503 GTCCGTGTCTTCCGGTGG 60.049 66.667 0.00 0.00 45.63 4.61
55 56 2.203523 TCCGTGTCTTCCGGTGGA 60.204 61.111 0.00 0.00 45.63 4.02
56 57 1.833492 TCCGTGTCTTCCGGTGGAA 60.833 57.895 0.00 0.00 45.63 3.53
57 58 1.666872 CCGTGTCTTCCGGTGGAAC 60.667 63.158 0.00 0.00 36.71 3.62
58 59 1.366366 CGTGTCTTCCGGTGGAACT 59.634 57.895 0.00 0.00 36.71 3.01
59 60 0.249741 CGTGTCTTCCGGTGGAACTT 60.250 55.000 0.00 0.00 36.71 2.66
60 61 1.808891 CGTGTCTTCCGGTGGAACTTT 60.809 52.381 0.00 0.00 36.71 2.66
61 62 2.546373 CGTGTCTTCCGGTGGAACTTTA 60.546 50.000 0.00 0.00 36.71 1.85
62 63 3.469739 GTGTCTTCCGGTGGAACTTTAA 58.530 45.455 0.00 0.00 36.71 1.52
63 64 4.070009 GTGTCTTCCGGTGGAACTTTAAT 58.930 43.478 0.00 0.00 36.71 1.40
64 65 4.153655 GTGTCTTCCGGTGGAACTTTAATC 59.846 45.833 0.00 0.00 36.71 1.75
65 66 3.688185 GTCTTCCGGTGGAACTTTAATCC 59.312 47.826 0.00 0.00 36.71 3.01
66 67 3.585732 TCTTCCGGTGGAACTTTAATCCT 59.414 43.478 0.00 0.00 36.71 3.24
67 68 3.622166 TCCGGTGGAACTTTAATCCTC 57.378 47.619 0.00 0.00 37.85 3.71
68 69 2.907696 TCCGGTGGAACTTTAATCCTCA 59.092 45.455 0.00 0.00 37.85 3.86
69 70 3.055385 TCCGGTGGAACTTTAATCCTCAG 60.055 47.826 0.00 0.00 37.85 3.35
70 71 3.307480 CCGGTGGAACTTTAATCCTCAGT 60.307 47.826 0.00 0.00 37.85 3.41
71 72 3.933332 CGGTGGAACTTTAATCCTCAGTC 59.067 47.826 0.00 0.00 37.85 3.51
72 73 3.933332 GGTGGAACTTTAATCCTCAGTCG 59.067 47.826 0.00 0.00 37.85 4.18
73 74 3.933332 GTGGAACTTTAATCCTCAGTCGG 59.067 47.826 0.00 0.00 37.85 4.79
74 75 3.581332 TGGAACTTTAATCCTCAGTCGGT 59.419 43.478 0.00 0.00 37.85 4.69
75 76 3.933332 GGAACTTTAATCCTCAGTCGGTG 59.067 47.826 0.00 0.00 33.98 4.94
76 77 2.973945 ACTTTAATCCTCAGTCGGTGC 58.026 47.619 0.00 0.00 0.00 5.01
77 78 2.567615 ACTTTAATCCTCAGTCGGTGCT 59.432 45.455 0.00 0.00 0.00 4.40
78 79 2.961526 TTAATCCTCAGTCGGTGCTC 57.038 50.000 0.00 0.00 0.00 4.26
79 80 0.738975 TAATCCTCAGTCGGTGCTCG 59.261 55.000 0.00 0.00 40.90 5.03
80 81 1.251527 AATCCTCAGTCGGTGCTCGT 61.252 55.000 0.54 0.00 40.32 4.18
81 82 1.658686 ATCCTCAGTCGGTGCTCGTC 61.659 60.000 0.54 0.00 40.32 4.20
82 83 2.626780 CCTCAGTCGGTGCTCGTCA 61.627 63.158 0.54 0.00 40.32 4.35
83 84 1.285950 CTCAGTCGGTGCTCGTCAA 59.714 57.895 0.54 0.00 40.32 3.18
84 85 1.004277 CTCAGTCGGTGCTCGTCAAC 61.004 60.000 0.54 0.00 40.32 3.18
85 86 1.299850 CAGTCGGTGCTCGTCAACA 60.300 57.895 0.54 0.00 40.32 3.33
86 87 0.667487 CAGTCGGTGCTCGTCAACAT 60.667 55.000 0.54 0.00 40.32 2.71
87 88 0.388649 AGTCGGTGCTCGTCAACATC 60.389 55.000 0.54 0.00 40.32 3.06
88 89 0.666274 GTCGGTGCTCGTCAACATCA 60.666 55.000 0.54 0.00 40.32 3.07
89 90 0.246360 TCGGTGCTCGTCAACATCAT 59.754 50.000 0.54 0.00 40.32 2.45
90 91 0.647410 CGGTGCTCGTCAACATCATC 59.353 55.000 0.00 0.00 31.06 2.92
91 92 0.647410 GGTGCTCGTCAACATCATCG 59.353 55.000 0.00 0.00 31.06 3.84
92 93 1.350193 GTGCTCGTCAACATCATCGT 58.650 50.000 0.00 0.00 0.00 3.73
93 94 1.059692 GTGCTCGTCAACATCATCGTG 59.940 52.381 0.00 0.00 0.00 4.35
94 95 1.067915 TGCTCGTCAACATCATCGTGA 60.068 47.619 0.00 0.00 0.00 4.35
95 96 1.992667 GCTCGTCAACATCATCGTGAA 59.007 47.619 0.00 0.00 0.00 3.18
96 97 2.604914 GCTCGTCAACATCATCGTGAAT 59.395 45.455 0.00 0.00 0.00 2.57
97 98 3.796717 GCTCGTCAACATCATCGTGAATA 59.203 43.478 0.00 0.00 0.00 1.75
98 99 4.317418 GCTCGTCAACATCATCGTGAATAC 60.317 45.833 0.00 0.00 0.00 1.89
99 100 4.739195 TCGTCAACATCATCGTGAATACA 58.261 39.130 0.00 0.00 0.00 2.29
100 101 4.798387 TCGTCAACATCATCGTGAATACAG 59.202 41.667 0.00 0.00 0.00 2.74
101 102 4.798387 CGTCAACATCATCGTGAATACAGA 59.202 41.667 0.00 0.00 0.00 3.41
102 103 5.288472 CGTCAACATCATCGTGAATACAGAA 59.712 40.000 0.00 0.00 0.00 3.02
103 104 6.506984 CGTCAACATCATCGTGAATACAGAAG 60.507 42.308 0.00 0.00 0.00 2.85
104 105 5.291858 TCAACATCATCGTGAATACAGAAGC 59.708 40.000 0.00 0.00 0.00 3.86
105 106 5.016051 ACATCATCGTGAATACAGAAGCT 57.984 39.130 0.00 0.00 0.00 3.74
106 107 5.046529 ACATCATCGTGAATACAGAAGCTC 58.953 41.667 0.00 0.00 0.00 4.09
107 108 3.695816 TCATCGTGAATACAGAAGCTCG 58.304 45.455 0.00 0.00 0.00 5.03
108 109 3.128764 TCATCGTGAATACAGAAGCTCGT 59.871 43.478 0.00 0.00 0.00 4.18
109 110 3.132629 TCGTGAATACAGAAGCTCGTC 57.867 47.619 0.00 0.00 0.00 4.20
110 111 2.486592 TCGTGAATACAGAAGCTCGTCA 59.513 45.455 0.00 0.00 0.00 4.35
111 112 3.057806 TCGTGAATACAGAAGCTCGTCAA 60.058 43.478 0.00 0.00 0.00 3.18
112 113 3.059570 CGTGAATACAGAAGCTCGTCAAC 59.940 47.826 0.00 0.00 0.00 3.18
113 114 4.238514 GTGAATACAGAAGCTCGTCAACT 58.761 43.478 0.00 0.00 0.00 3.16
114 115 4.324936 GTGAATACAGAAGCTCGTCAACTC 59.675 45.833 0.00 0.00 0.00 3.01
115 116 2.613730 TACAGAAGCTCGTCAACTCG 57.386 50.000 0.00 0.00 0.00 4.18
116 117 0.664767 ACAGAAGCTCGTCAACTCGC 60.665 55.000 0.00 0.00 0.00 5.03
117 118 1.080434 AGAAGCTCGTCAACTCGCC 60.080 57.895 0.00 0.00 0.00 5.54
118 119 2.430921 AAGCTCGTCAACTCGCCG 60.431 61.111 0.00 0.00 0.00 6.46
121 122 4.717629 CTCGTCAACTCGCCGCCA 62.718 66.667 0.00 0.00 0.00 5.69
122 123 4.287781 TCGTCAACTCGCCGCCAA 62.288 61.111 0.00 0.00 0.00 4.52
123 124 4.072088 CGTCAACTCGCCGCCAAC 62.072 66.667 0.00 0.00 0.00 3.77
124 125 2.665185 GTCAACTCGCCGCCAACT 60.665 61.111 0.00 0.00 0.00 3.16
125 126 2.110213 TCAACTCGCCGCCAACTT 59.890 55.556 0.00 0.00 0.00 2.66
126 127 1.525077 TCAACTCGCCGCCAACTTT 60.525 52.632 0.00 0.00 0.00 2.66
127 128 1.082104 CAACTCGCCGCCAACTTTC 60.082 57.895 0.00 0.00 0.00 2.62
128 129 2.258726 AACTCGCCGCCAACTTTCC 61.259 57.895 0.00 0.00 0.00 3.13
129 130 2.668212 CTCGCCGCCAACTTTCCA 60.668 61.111 0.00 0.00 0.00 3.53
130 131 2.668212 TCGCCGCCAACTTTCCAG 60.668 61.111 0.00 0.00 0.00 3.86
131 132 3.737172 CGCCGCCAACTTTCCAGG 61.737 66.667 0.00 0.00 0.00 4.45
132 133 2.282180 GCCGCCAACTTTCCAGGA 60.282 61.111 0.00 0.00 0.00 3.86
133 134 2.335712 GCCGCCAACTTTCCAGGAG 61.336 63.158 0.00 0.00 0.00 3.69
134 135 1.675641 CCGCCAACTTTCCAGGAGG 60.676 63.158 0.00 0.00 36.05 4.30
135 136 1.374947 CGCCAACTTTCCAGGAGGA 59.625 57.895 0.00 0.00 43.93 3.71
136 137 0.035056 CGCCAACTTTCCAGGAGGAT 60.035 55.000 0.00 0.00 45.26 3.24
137 138 1.756430 GCCAACTTTCCAGGAGGATC 58.244 55.000 0.00 0.00 45.26 3.36
138 139 2.014068 GCCAACTTTCCAGGAGGATCG 61.014 57.143 0.00 0.00 45.26 3.69
139 140 1.555075 CCAACTTTCCAGGAGGATCGA 59.445 52.381 0.00 0.00 45.26 3.59
140 141 2.622436 CAACTTTCCAGGAGGATCGAC 58.378 52.381 0.00 0.00 45.26 4.20
141 142 1.196012 ACTTTCCAGGAGGATCGACC 58.804 55.000 0.00 0.00 45.26 4.79
142 143 0.466124 CTTTCCAGGAGGATCGACCC 59.534 60.000 0.00 0.00 45.26 4.46
143 144 0.981277 TTTCCAGGAGGATCGACCCC 60.981 60.000 0.00 0.00 45.26 4.95
144 145 3.227276 CCAGGAGGATCGACCCCG 61.227 72.222 0.00 0.00 40.05 5.73
153 154 4.288234 TCGACCCCGATAGCCATT 57.712 55.556 0.00 0.00 40.30 3.16
154 155 1.745890 TCGACCCCGATAGCCATTG 59.254 57.895 0.00 0.00 40.30 2.82
155 156 0.757561 TCGACCCCGATAGCCATTGA 60.758 55.000 0.00 0.00 40.30 2.57
156 157 0.321671 CGACCCCGATAGCCATTGAT 59.678 55.000 0.00 0.00 38.22 2.57
157 158 1.673033 CGACCCCGATAGCCATTGATC 60.673 57.143 0.00 0.00 38.22 2.92
158 159 1.347707 GACCCCGATAGCCATTGATCA 59.652 52.381 0.00 0.00 0.00 2.92
159 160 1.349026 ACCCCGATAGCCATTGATCAG 59.651 52.381 0.00 0.00 0.00 2.90
160 161 1.339438 CCCCGATAGCCATTGATCAGG 60.339 57.143 0.00 0.00 0.00 3.86
161 162 1.625315 CCCGATAGCCATTGATCAGGA 59.375 52.381 5.19 0.00 0.00 3.86
162 163 2.354503 CCCGATAGCCATTGATCAGGAG 60.355 54.545 5.19 0.00 0.00 3.69
163 164 2.564504 CCGATAGCCATTGATCAGGAGA 59.435 50.000 5.19 0.00 0.00 3.71
164 165 3.007290 CCGATAGCCATTGATCAGGAGAA 59.993 47.826 5.19 0.00 0.00 2.87
165 166 4.503817 CCGATAGCCATTGATCAGGAGAAA 60.504 45.833 5.19 0.00 0.00 2.52
166 167 5.059161 CGATAGCCATTGATCAGGAGAAAA 58.941 41.667 5.19 0.00 0.00 2.29
167 168 5.178996 CGATAGCCATTGATCAGGAGAAAAG 59.821 44.000 5.19 0.00 0.00 2.27
168 169 4.581309 AGCCATTGATCAGGAGAAAAGA 57.419 40.909 5.19 0.00 0.00 2.52
169 170 4.525024 AGCCATTGATCAGGAGAAAAGAG 58.475 43.478 5.19 0.00 0.00 2.85
170 171 4.226846 AGCCATTGATCAGGAGAAAAGAGA 59.773 41.667 5.19 0.00 0.00 3.10
171 172 5.104024 AGCCATTGATCAGGAGAAAAGAGAT 60.104 40.000 5.19 0.00 0.00 2.75
172 173 5.008811 GCCATTGATCAGGAGAAAAGAGATG 59.991 44.000 5.19 0.00 0.00 2.90
173 174 6.354938 CCATTGATCAGGAGAAAAGAGATGA 58.645 40.000 0.00 0.00 0.00 2.92
174 175 6.483974 CCATTGATCAGGAGAAAAGAGATGAG 59.516 42.308 0.00 0.00 0.00 2.90
175 176 6.864151 TTGATCAGGAGAAAAGAGATGAGA 57.136 37.500 0.00 0.00 0.00 3.27
176 177 6.468333 TGATCAGGAGAAAAGAGATGAGAG 57.532 41.667 0.00 0.00 0.00 3.20
177 178 4.734398 TCAGGAGAAAAGAGATGAGAGC 57.266 45.455 0.00 0.00 0.00 4.09
178 179 3.130164 TCAGGAGAAAAGAGATGAGAGCG 59.870 47.826 0.00 0.00 0.00 5.03
179 180 3.130164 CAGGAGAAAAGAGATGAGAGCGA 59.870 47.826 0.00 0.00 0.00 4.93
180 181 3.381272 AGGAGAAAAGAGATGAGAGCGAG 59.619 47.826 0.00 0.00 0.00 5.03
181 182 3.490761 GGAGAAAAGAGATGAGAGCGAGG 60.491 52.174 0.00 0.00 0.00 4.63
182 183 3.360867 AGAAAAGAGATGAGAGCGAGGA 58.639 45.455 0.00 0.00 0.00 3.71
183 184 3.766591 AGAAAAGAGATGAGAGCGAGGAA 59.233 43.478 0.00 0.00 0.00 3.36
184 185 3.799281 AAAGAGATGAGAGCGAGGAAG 57.201 47.619 0.00 0.00 0.00 3.46
185 186 2.727123 AGAGATGAGAGCGAGGAAGA 57.273 50.000 0.00 0.00 0.00 2.87
186 187 3.011566 AGAGATGAGAGCGAGGAAGAA 57.988 47.619 0.00 0.00 0.00 2.52
187 188 2.687935 AGAGATGAGAGCGAGGAAGAAC 59.312 50.000 0.00 0.00 0.00 3.01
188 189 2.425312 GAGATGAGAGCGAGGAAGAACA 59.575 50.000 0.00 0.00 0.00 3.18
189 190 3.030291 AGATGAGAGCGAGGAAGAACAT 58.970 45.455 0.00 0.00 0.00 2.71
190 191 2.662006 TGAGAGCGAGGAAGAACATG 57.338 50.000 0.00 0.00 0.00 3.21
191 192 1.205655 TGAGAGCGAGGAAGAACATGG 59.794 52.381 0.00 0.00 0.00 3.66
192 193 0.107945 AGAGCGAGGAAGAACATGGC 60.108 55.000 0.00 0.00 34.47 4.40
193 194 0.107945 GAGCGAGGAAGAACATGGCT 60.108 55.000 0.00 0.00 45.85 4.75
194 195 0.326264 AGCGAGGAAGAACATGGCTT 59.674 50.000 0.00 0.00 41.05 4.35
195 196 0.449388 GCGAGGAAGAACATGGCTTG 59.551 55.000 7.69 0.00 31.79 4.01
196 197 1.089920 CGAGGAAGAACATGGCTTGG 58.910 55.000 7.69 0.00 0.00 3.61
197 198 0.813821 GAGGAAGAACATGGCTTGGC 59.186 55.000 7.69 0.00 0.00 4.52
207 208 3.922640 GGCTTGGCCCGCACAAAA 61.923 61.111 15.09 0.00 44.06 2.44
208 209 2.356194 GCTTGGCCCGCACAAAAG 60.356 61.111 0.00 0.00 0.00 2.27
209 210 3.128375 CTTGGCCCGCACAAAAGT 58.872 55.556 0.00 0.00 0.00 2.66
210 211 1.300080 CTTGGCCCGCACAAAAGTG 60.300 57.895 0.00 0.00 0.00 3.16
211 212 1.733402 CTTGGCCCGCACAAAAGTGA 61.733 55.000 0.00 0.00 0.00 3.41
212 213 1.323271 TTGGCCCGCACAAAAGTGAA 61.323 50.000 0.00 0.00 0.00 3.18
213 214 1.323271 TGGCCCGCACAAAAGTGAAA 61.323 50.000 0.00 0.00 0.00 2.69
214 215 0.179097 GGCCCGCACAAAAGTGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
215 216 1.646189 GCCCGCACAAAAGTGAAAAA 58.354 45.000 0.00 0.00 0.00 1.94
229 230 4.892002 AAAAAGCGAGTTCCCGGT 57.108 50.000 0.00 0.00 42.47 5.28
230 231 2.625375 AAAAAGCGAGTTCCCGGTC 58.375 52.632 0.00 0.00 39.52 4.79
231 232 0.179040 AAAAAGCGAGTTCCCGGTCA 60.179 50.000 0.00 0.00 39.52 4.02
232 233 0.602905 AAAAGCGAGTTCCCGGTCAG 60.603 55.000 0.00 0.00 39.52 3.51
233 234 2.450479 AAAGCGAGTTCCCGGTCAGG 62.450 60.000 0.00 0.00 39.52 3.86
234 235 3.379445 GCGAGTTCCCGGTCAGGA 61.379 66.667 0.00 0.00 45.00 3.86
235 236 2.722201 GCGAGTTCCCGGTCAGGAT 61.722 63.158 0.00 0.00 45.00 3.24
236 237 1.898154 CGAGTTCCCGGTCAGGATT 59.102 57.895 0.00 0.00 45.00 3.01
237 238 0.460284 CGAGTTCCCGGTCAGGATTG 60.460 60.000 0.00 0.00 45.00 2.67
238 239 0.613777 GAGTTCCCGGTCAGGATTGT 59.386 55.000 0.00 0.00 45.00 2.71
239 240 0.324943 AGTTCCCGGTCAGGATTGTG 59.675 55.000 0.00 0.00 45.00 3.33
240 241 1.002624 TTCCCGGTCAGGATTGTGC 60.003 57.895 0.00 0.00 45.00 4.57
241 242 1.488705 TTCCCGGTCAGGATTGTGCT 61.489 55.000 0.00 0.00 45.00 4.40
242 243 1.002134 CCCGGTCAGGATTGTGCTT 60.002 57.895 0.00 0.00 45.00 3.91
243 244 0.609131 CCCGGTCAGGATTGTGCTTT 60.609 55.000 0.00 0.00 45.00 3.51
244 245 1.247567 CCGGTCAGGATTGTGCTTTT 58.752 50.000 0.00 0.00 45.00 2.27
245 246 1.613437 CCGGTCAGGATTGTGCTTTTT 59.387 47.619 0.00 0.00 45.00 1.94
246 247 2.351738 CCGGTCAGGATTGTGCTTTTTC 60.352 50.000 0.00 0.00 45.00 2.29
247 248 2.351738 CGGTCAGGATTGTGCTTTTTCC 60.352 50.000 0.00 0.00 0.00 3.13
248 249 2.351738 GGTCAGGATTGTGCTTTTTCCG 60.352 50.000 0.00 0.00 33.35 4.30
249 250 1.885887 TCAGGATTGTGCTTTTTCCGG 59.114 47.619 0.00 0.00 33.35 5.14
250 251 1.613437 CAGGATTGTGCTTTTTCCGGT 59.387 47.619 0.00 0.00 33.35 5.28
251 252 1.613437 AGGATTGTGCTTTTTCCGGTG 59.387 47.619 0.00 0.00 33.35 4.94
252 253 1.339929 GGATTGTGCTTTTTCCGGTGT 59.660 47.619 0.00 0.00 0.00 4.16
253 254 2.393764 GATTGTGCTTTTTCCGGTGTG 58.606 47.619 0.00 0.00 0.00 3.82
254 255 1.178276 TTGTGCTTTTTCCGGTGTGT 58.822 45.000 0.00 0.00 0.00 3.72
255 256 0.736053 TGTGCTTTTTCCGGTGTGTC 59.264 50.000 0.00 0.00 0.00 3.67
256 257 0.736053 GTGCTTTTTCCGGTGTGTCA 59.264 50.000 0.00 0.00 0.00 3.58
257 258 1.133407 GTGCTTTTTCCGGTGTGTCAA 59.867 47.619 0.00 0.00 0.00 3.18
258 259 1.819288 TGCTTTTTCCGGTGTGTCAAA 59.181 42.857 0.00 0.00 0.00 2.69
259 260 2.428890 TGCTTTTTCCGGTGTGTCAAAT 59.571 40.909 0.00 0.00 0.00 2.32
260 261 3.632604 TGCTTTTTCCGGTGTGTCAAATA 59.367 39.130 0.00 0.00 0.00 1.40
261 262 4.279671 TGCTTTTTCCGGTGTGTCAAATAT 59.720 37.500 0.00 0.00 0.00 1.28
262 263 5.473846 TGCTTTTTCCGGTGTGTCAAATATA 59.526 36.000 0.00 0.00 0.00 0.86
263 264 6.151985 TGCTTTTTCCGGTGTGTCAAATATAT 59.848 34.615 0.00 0.00 0.00 0.86
264 265 6.691388 GCTTTTTCCGGTGTGTCAAATATATC 59.309 38.462 0.00 0.00 0.00 1.63
265 266 7.415206 GCTTTTTCCGGTGTGTCAAATATATCT 60.415 37.037 0.00 0.00 0.00 1.98
266 267 9.104965 CTTTTTCCGGTGTGTCAAATATATCTA 57.895 33.333 0.00 0.00 0.00 1.98
267 268 9.451002 TTTTTCCGGTGTGTCAAATATATCTAA 57.549 29.630 0.00 0.00 0.00 2.10
268 269 8.657074 TTTCCGGTGTGTCAAATATATCTAAG 57.343 34.615 0.00 0.00 0.00 2.18
269 270 6.755206 TCCGGTGTGTCAAATATATCTAAGG 58.245 40.000 0.00 0.00 0.00 2.69
270 271 6.325545 TCCGGTGTGTCAAATATATCTAAGGT 59.674 38.462 0.00 0.00 0.00 3.50
271 272 6.645415 CCGGTGTGTCAAATATATCTAAGGTC 59.355 42.308 0.00 0.00 0.00 3.85
272 273 6.362551 CGGTGTGTCAAATATATCTAAGGTCG 59.637 42.308 0.00 0.00 0.00 4.79
273 274 6.645415 GGTGTGTCAAATATATCTAAGGTCGG 59.355 42.308 0.00 0.00 0.00 4.79
274 275 6.645415 GTGTGTCAAATATATCTAAGGTCGGG 59.355 42.308 0.00 0.00 0.00 5.14
275 276 6.551975 TGTGTCAAATATATCTAAGGTCGGGA 59.448 38.462 0.00 0.00 0.00 5.14
276 277 7.234782 TGTGTCAAATATATCTAAGGTCGGGAT 59.765 37.037 0.00 0.00 0.00 3.85
277 278 8.746530 GTGTCAAATATATCTAAGGTCGGGATA 58.253 37.037 0.00 0.00 0.00 2.59
278 279 8.967918 TGTCAAATATATCTAAGGTCGGGATAG 58.032 37.037 0.00 0.00 0.00 2.08
279 280 9.186837 GTCAAATATATCTAAGGTCGGGATAGA 57.813 37.037 0.00 0.00 0.00 1.98
280 281 9.186837 TCAAATATATCTAAGGTCGGGATAGAC 57.813 37.037 0.00 0.00 40.25 2.59
291 292 2.841442 GGGATAGACCGGGATCAAAG 57.159 55.000 6.32 0.00 40.11 2.77
292 293 2.326428 GGGATAGACCGGGATCAAAGA 58.674 52.381 6.32 0.00 40.11 2.52
293 294 2.300437 GGGATAGACCGGGATCAAAGAG 59.700 54.545 6.32 0.00 40.11 2.85
294 295 2.300437 GGATAGACCGGGATCAAAGAGG 59.700 54.545 6.32 0.00 0.00 3.69
295 296 2.544844 TAGACCGGGATCAAAGAGGT 57.455 50.000 6.32 0.00 38.00 3.85
296 297 3.762674 GACCGGGATCAAAGAGGTC 57.237 57.895 6.32 1.99 43.55 3.85
297 298 3.082619 ACCGGGATCAAAGAGGTCA 57.917 52.632 6.32 0.00 0.00 4.02
298 299 0.905357 ACCGGGATCAAAGAGGTCAG 59.095 55.000 6.32 0.00 0.00 3.51
299 300 0.179000 CCGGGATCAAAGAGGTCAGG 59.821 60.000 0.00 0.00 0.00 3.86
300 301 0.179000 CGGGATCAAAGAGGTCAGGG 59.821 60.000 0.00 0.00 0.00 4.45
301 302 1.290134 GGGATCAAAGAGGTCAGGGT 58.710 55.000 0.00 0.00 0.00 4.34
302 303 2.478292 GGGATCAAAGAGGTCAGGGTA 58.522 52.381 0.00 0.00 0.00 3.69
303 304 3.049344 GGGATCAAAGAGGTCAGGGTAT 58.951 50.000 0.00 0.00 0.00 2.73
304 305 3.071747 GGGATCAAAGAGGTCAGGGTATC 59.928 52.174 0.00 0.00 0.00 2.24
305 306 3.711704 GGATCAAAGAGGTCAGGGTATCA 59.288 47.826 0.00 0.00 0.00 2.15
306 307 4.164221 GGATCAAAGAGGTCAGGGTATCAA 59.836 45.833 0.00 0.00 0.00 2.57
307 308 4.553330 TCAAAGAGGTCAGGGTATCAAC 57.447 45.455 0.00 0.00 0.00 3.18
308 309 4.168101 TCAAAGAGGTCAGGGTATCAACT 58.832 43.478 0.00 0.00 0.00 3.16
309 310 4.597507 TCAAAGAGGTCAGGGTATCAACTT 59.402 41.667 0.00 0.00 0.00 2.66
310 311 4.828072 AAGAGGTCAGGGTATCAACTTC 57.172 45.455 0.00 0.00 0.00 3.01
311 312 3.791320 AGAGGTCAGGGTATCAACTTCA 58.209 45.455 0.00 0.00 0.00 3.02
312 313 4.168101 AGAGGTCAGGGTATCAACTTCAA 58.832 43.478 0.00 0.00 0.00 2.69
313 314 4.223923 AGAGGTCAGGGTATCAACTTCAAG 59.776 45.833 0.00 0.00 0.00 3.02
314 315 3.264450 AGGTCAGGGTATCAACTTCAAGG 59.736 47.826 0.00 0.00 0.00 3.61
315 316 3.263425 GGTCAGGGTATCAACTTCAAGGA 59.737 47.826 0.00 0.00 0.00 3.36
316 317 4.080299 GGTCAGGGTATCAACTTCAAGGAT 60.080 45.833 0.00 0.00 0.00 3.24
317 318 5.501156 GTCAGGGTATCAACTTCAAGGATT 58.499 41.667 0.00 0.00 0.00 3.01
318 319 5.946377 GTCAGGGTATCAACTTCAAGGATTT 59.054 40.000 0.00 0.00 0.00 2.17
319 320 5.945784 TCAGGGTATCAACTTCAAGGATTTG 59.054 40.000 0.00 0.00 35.57 2.32
320 321 5.945784 CAGGGTATCAACTTCAAGGATTTGA 59.054 40.000 0.00 0.00 41.44 2.69
330 331 4.873746 TCAAGGATTTGAAGACGAGAGT 57.126 40.909 0.00 0.00 43.70 3.24
331 332 5.215252 TCAAGGATTTGAAGACGAGAGTT 57.785 39.130 0.00 0.00 42.05 3.01
332 333 5.230942 TCAAGGATTTGAAGACGAGAGTTC 58.769 41.667 0.00 0.00 42.05 3.01
333 334 4.991056 CAAGGATTTGAAGACGAGAGTTCA 59.009 41.667 0.00 0.00 39.88 3.18
334 335 5.641209 CAAGGATTTGAAGACGAGAGTTCAT 59.359 40.000 0.00 0.00 39.88 2.57
335 336 6.148480 CAAGGATTTGAAGACGAGAGTTCATT 59.852 38.462 0.00 0.00 39.88 2.57
336 337 7.308229 CAAGGATTTGAAGACGAGAGTTCATTT 60.308 37.037 0.00 0.00 39.88 2.32
342 343 2.949714 ACGAGAGTTCATTTGCGTTG 57.050 45.000 0.00 0.00 46.40 4.10
343 344 1.531149 ACGAGAGTTCATTTGCGTTGG 59.469 47.619 0.00 0.00 46.40 3.77
344 345 1.725931 CGAGAGTTCATTTGCGTTGGC 60.726 52.381 0.00 0.00 40.52 4.52
345 346 0.598065 AGAGTTCATTTGCGTTGGCC 59.402 50.000 0.00 0.00 38.85 5.36
346 347 0.598065 GAGTTCATTTGCGTTGGCCT 59.402 50.000 3.32 0.00 38.85 5.19
347 348 0.598065 AGTTCATTTGCGTTGGCCTC 59.402 50.000 3.32 0.00 38.85 4.70
348 349 0.598065 GTTCATTTGCGTTGGCCTCT 59.402 50.000 3.32 0.00 38.85 3.69
349 350 1.810151 GTTCATTTGCGTTGGCCTCTA 59.190 47.619 3.32 0.00 38.85 2.43
350 351 1.448985 TCATTTGCGTTGGCCTCTAC 58.551 50.000 3.32 0.00 38.85 2.59
351 352 1.164411 CATTTGCGTTGGCCTCTACA 58.836 50.000 3.32 0.00 38.85 2.74
352 353 1.539388 CATTTGCGTTGGCCTCTACAA 59.461 47.619 3.32 0.51 38.85 2.41
353 354 1.904287 TTTGCGTTGGCCTCTACAAT 58.096 45.000 3.32 0.00 38.85 2.71
354 355 1.448985 TTGCGTTGGCCTCTACAATC 58.551 50.000 3.32 0.00 38.85 2.67
355 356 0.613260 TGCGTTGGCCTCTACAATCT 59.387 50.000 3.32 0.00 38.85 2.40
356 357 1.003118 TGCGTTGGCCTCTACAATCTT 59.997 47.619 3.32 0.00 38.85 2.40
357 358 2.235155 TGCGTTGGCCTCTACAATCTTA 59.765 45.455 3.32 0.00 38.85 2.10
358 359 3.267483 GCGTTGGCCTCTACAATCTTAA 58.733 45.455 3.32 0.00 0.00 1.85
359 360 3.309954 GCGTTGGCCTCTACAATCTTAAG 59.690 47.826 3.32 0.00 0.00 1.85
360 361 4.755411 CGTTGGCCTCTACAATCTTAAGA 58.245 43.478 7.82 7.82 0.00 2.10
361 362 5.360591 CGTTGGCCTCTACAATCTTAAGAT 58.639 41.667 12.37 12.37 36.07 2.40
362 363 5.817816 CGTTGGCCTCTACAATCTTAAGATT 59.182 40.000 22.43 22.43 44.93 2.40
363 364 6.316390 CGTTGGCCTCTACAATCTTAAGATTT 59.684 38.462 24.94 18.38 42.41 2.17
364 365 7.494625 CGTTGGCCTCTACAATCTTAAGATTTA 59.505 37.037 24.94 18.49 42.41 1.40
365 366 9.343539 GTTGGCCTCTACAATCTTAAGATTTAT 57.656 33.333 24.94 18.65 42.41 1.40
366 367 9.920946 TTGGCCTCTACAATCTTAAGATTTATT 57.079 29.630 24.94 15.61 42.41 1.40
367 368 9.920946 TGGCCTCTACAATCTTAAGATTTATTT 57.079 29.630 24.94 13.53 42.41 1.40
387 388 4.929819 TTTAGACTTCACTTTTTGCCCC 57.070 40.909 0.00 0.00 0.00 5.80
396 397 3.964031 TCACTTTTTGCCCCACTTTACAT 59.036 39.130 0.00 0.00 0.00 2.29
398 399 3.964031 ACTTTTTGCCCCACTTTACATGA 59.036 39.130 0.00 0.00 0.00 3.07
399 400 4.039124 ACTTTTTGCCCCACTTTACATGAG 59.961 41.667 0.00 0.00 0.00 2.90
407 408 5.505780 CCCCACTTTACATGAGGTTTGATA 58.494 41.667 0.00 0.00 0.00 2.15
414 415 8.034804 ACTTTACATGAGGTTTGATAATTTGCC 58.965 33.333 0.00 0.00 0.00 4.52
423 424 5.395214 GGTTTGATAATTTGCCCTAGGGTTG 60.395 44.000 28.96 4.26 37.65 3.77
440 441 2.029380 GGTTGTCCCAATAACAAGTGGC 60.029 50.000 0.00 0.00 37.30 5.01
448 449 1.493854 ATAACAAGTGGCCCCGACCA 61.494 55.000 0.00 0.00 37.38 4.02
463 464 1.656652 GACCACACCCATCAATCTCG 58.343 55.000 0.00 0.00 0.00 4.04
495 496 6.674694 ATCTATTTTCTCAGTCACATGCAC 57.325 37.500 0.00 0.00 0.00 4.57
523 525 1.043022 ACGGACCTGTCGGTTTAGTT 58.957 50.000 4.83 0.00 45.73 2.24
635 638 1.067495 GCGTCAACCTTCTAGAGCACT 60.067 52.381 0.00 0.00 0.00 4.40
835 838 3.372060 TCGCACACGCATAGAAGATAAG 58.628 45.455 0.00 0.00 39.84 1.73
929 941 1.517242 CACAAACCAGAGCTCCTCAC 58.483 55.000 10.93 0.00 32.06 3.51
949 965 1.660607 CGAAGAGCTAAGCAATCGCAA 59.339 47.619 0.00 0.00 42.27 4.85
966 984 1.466360 GCAACGCATCAGATCACCAAC 60.466 52.381 0.00 0.00 0.00 3.77
967 985 1.805943 CAACGCATCAGATCACCAACA 59.194 47.619 0.00 0.00 0.00 3.33
968 986 2.408271 ACGCATCAGATCACCAACAT 57.592 45.000 0.00 0.00 0.00 2.71
969 987 2.715046 ACGCATCAGATCACCAACATT 58.285 42.857 0.00 0.00 0.00 2.71
973 991 4.554134 CGCATCAGATCACCAACATTCATC 60.554 45.833 0.00 0.00 0.00 2.92
1559 8638 4.697514 GTCAGCTGGACTAATGATAAGCA 58.302 43.478 15.13 0.00 43.46 3.91
1620 8701 7.549615 AGCTTATTTGTTATTTCGAGGGTAC 57.450 36.000 0.00 0.00 0.00 3.34
1723 8804 8.650490 ACAATCTGGTCAATATTCCTTTTTGTT 58.350 29.630 0.00 0.00 0.00 2.83
1724 8805 8.928733 CAATCTGGTCAATATTCCTTTTTGTTG 58.071 33.333 0.00 0.00 0.00 3.33
1725 8806 6.991938 TCTGGTCAATATTCCTTTTTGTTGG 58.008 36.000 0.00 0.00 0.00 3.77
1726 8807 6.014669 TCTGGTCAATATTCCTTTTTGTTGGG 60.015 38.462 0.00 0.00 0.00 4.12
1727 8808 5.012561 TGGTCAATATTCCTTTTTGTTGGGG 59.987 40.000 0.00 0.00 0.00 4.96
1728 8809 5.247337 GGTCAATATTCCTTTTTGTTGGGGA 59.753 40.000 0.00 0.00 0.00 4.81
1729 8810 6.239743 GGTCAATATTCCTTTTTGTTGGGGAA 60.240 38.462 0.00 0.00 41.29 3.97
1730 8811 7.220740 GTCAATATTCCTTTTTGTTGGGGAAA 58.779 34.615 0.00 0.00 40.57 3.13
1731 8812 7.717436 GTCAATATTCCTTTTTGTTGGGGAAAA 59.283 33.333 0.00 0.00 40.57 2.29
1732 8813 7.936301 TCAATATTCCTTTTTGTTGGGGAAAAG 59.064 33.333 0.00 0.00 40.57 2.27
1733 8814 5.708736 ATTCCTTTTTGTTGGGGAAAAGT 57.291 34.783 0.00 0.00 40.57 2.66
1734 8815 4.746535 TCCTTTTTGTTGGGGAAAAGTC 57.253 40.909 7.53 0.00 39.86 3.01
1735 8816 4.358214 TCCTTTTTGTTGGGGAAAAGTCT 58.642 39.130 7.53 0.00 39.86 3.24
1736 8817 4.161377 TCCTTTTTGTTGGGGAAAAGTCTG 59.839 41.667 7.53 0.00 39.86 3.51
1737 8818 4.161377 CCTTTTTGTTGGGGAAAAGTCTGA 59.839 41.667 7.53 0.00 39.86 3.27
1738 8819 5.163311 CCTTTTTGTTGGGGAAAAGTCTGAT 60.163 40.000 7.53 0.00 39.86 2.90
1739 8820 6.041523 CCTTTTTGTTGGGGAAAAGTCTGATA 59.958 38.462 7.53 0.00 39.86 2.15
1740 8821 7.256296 CCTTTTTGTTGGGGAAAAGTCTGATAT 60.256 37.037 7.53 0.00 39.86 1.63
1741 8822 7.610580 TTTTGTTGGGGAAAAGTCTGATATT 57.389 32.000 0.00 0.00 0.00 1.28
1742 8823 6.588719 TTGTTGGGGAAAAGTCTGATATTG 57.411 37.500 0.00 0.00 0.00 1.90
1743 8824 5.640147 TGTTGGGGAAAAGTCTGATATTGT 58.360 37.500 0.00 0.00 0.00 2.71
1744 8825 6.785076 TGTTGGGGAAAAGTCTGATATTGTA 58.215 36.000 0.00 0.00 0.00 2.41
1745 8826 7.410174 TGTTGGGGAAAAGTCTGATATTGTAT 58.590 34.615 0.00 0.00 0.00 2.29
1756 8837 7.500992 AGTCTGATATTGTATGTCGGTTTCAT 58.499 34.615 0.00 0.00 0.00 2.57
1774 8855 3.079578 TCATACTGAAGACCGACGACTT 58.920 45.455 0.00 1.38 0.00 3.01
1782 8863 0.801067 GACCGACGACTTCATTCCCG 60.801 60.000 0.00 0.00 0.00 5.14
1785 8866 0.099968 CGACGACTTCATTCCCGCTA 59.900 55.000 0.00 0.00 0.00 4.26
1806 8887 5.049680 GCTAAAACACAAGAAGACCGATGAA 60.050 40.000 0.00 0.00 0.00 2.57
1807 8888 6.348540 GCTAAAACACAAGAAGACCGATGAAT 60.349 38.462 0.00 0.00 0.00 2.57
1808 8889 7.148474 GCTAAAACACAAGAAGACCGATGAATA 60.148 37.037 0.00 0.00 0.00 1.75
1809 8890 7.504924 AAAACACAAGAAGACCGATGAATAA 57.495 32.000 0.00 0.00 0.00 1.40
1810 8891 6.481954 AACACAAGAAGACCGATGAATAAC 57.518 37.500 0.00 0.00 0.00 1.89
1811 8892 4.625742 ACACAAGAAGACCGATGAATAACG 59.374 41.667 0.00 0.00 0.00 3.18
1812 8893 4.862574 CACAAGAAGACCGATGAATAACGA 59.137 41.667 0.00 0.00 0.00 3.85
1813 8894 4.863131 ACAAGAAGACCGATGAATAACGAC 59.137 41.667 0.00 0.00 0.00 4.34
1814 8895 4.043037 AGAAGACCGATGAATAACGACC 57.957 45.455 0.00 0.00 0.00 4.79
1815 8896 2.486951 AGACCGATGAATAACGACCG 57.513 50.000 0.00 0.00 0.00 4.79
1816 8897 0.850856 GACCGATGAATAACGACCGC 59.149 55.000 0.00 0.00 0.00 5.68
1817 8898 0.173935 ACCGATGAATAACGACCGCA 59.826 50.000 0.00 0.00 0.00 5.69
1818 8899 1.282817 CCGATGAATAACGACCGCAA 58.717 50.000 0.00 0.00 0.00 4.85
1819 8900 1.257936 CCGATGAATAACGACCGCAAG 59.742 52.381 0.00 0.00 0.00 4.01
1820 8901 1.924524 CGATGAATAACGACCGCAAGT 59.075 47.619 0.00 0.00 0.00 3.16
1847 8928 3.489180 AAAGATAGGACAGTGACGACG 57.511 47.619 0.00 0.00 0.00 5.12
1848 8929 2.398252 AGATAGGACAGTGACGACGA 57.602 50.000 0.00 0.00 0.00 4.20
1849 8930 2.708051 AGATAGGACAGTGACGACGAA 58.292 47.619 0.00 0.00 0.00 3.85
1850 8931 2.678836 AGATAGGACAGTGACGACGAAG 59.321 50.000 0.00 0.00 0.00 3.79
1851 8932 0.520404 TAGGACAGTGACGACGAAGC 59.480 55.000 0.00 0.00 0.00 3.86
1854 8935 1.060726 GACAGTGACGACGAAGCTCG 61.061 60.000 0.00 4.36 46.93 5.03
1868 8949 3.477802 CGAAGCTCGTCGTAACATCTAAC 59.522 47.826 0.00 0.00 36.26 2.34
1873 8954 4.026804 GCTCGTCGTAACATCTAACCATTG 60.027 45.833 0.00 0.00 0.00 2.82
1878 8959 7.009815 TCGTCGTAACATCTAACCATTGATTTC 59.990 37.037 0.00 0.00 0.00 2.17
1891 8972 6.748132 ACCATTGATTTCAAATCGAAACAGT 58.252 32.000 4.06 0.00 46.22 3.55
1892 8973 7.881142 ACCATTGATTTCAAATCGAAACAGTA 58.119 30.769 4.06 0.00 46.22 2.74
1910 8991 7.435068 AACAGTAAAAACATTAGAGACGCAT 57.565 32.000 0.00 0.00 0.00 4.73
1914 8995 8.015087 CAGTAAAAACATTAGAGACGCATTTCA 58.985 33.333 0.00 0.00 0.00 2.69
1918 8999 6.741992 AACATTAGAGACGCATTTCAATGA 57.258 33.333 3.60 0.00 38.70 2.57
1928 9009 2.867429 CATTTCAATGAGCCAACGACC 58.133 47.619 0.00 0.00 38.70 4.79
1929 9010 1.974265 TTTCAATGAGCCAACGACCA 58.026 45.000 0.00 0.00 0.00 4.02
1930 9011 1.974265 TTCAATGAGCCAACGACCAA 58.026 45.000 0.00 0.00 0.00 3.67
1931 9012 2.198827 TCAATGAGCCAACGACCAAT 57.801 45.000 0.00 0.00 0.00 3.16
1932 9013 3.342377 TCAATGAGCCAACGACCAATA 57.658 42.857 0.00 0.00 0.00 1.90
1936 9017 1.626321 TGAGCCAACGACCAATAAGGA 59.374 47.619 0.00 0.00 41.22 3.36
1953 9034 7.310609 CCAATAAGGACATGTTTGGGAGAATTT 60.311 37.037 15.64 0.00 41.22 1.82
1954 9035 5.728637 AAGGACATGTTTGGGAGAATTTC 57.271 39.130 0.00 0.00 0.00 2.17
1955 9036 4.739793 AGGACATGTTTGGGAGAATTTCA 58.260 39.130 0.00 0.00 0.00 2.69
1956 9037 4.768968 AGGACATGTTTGGGAGAATTTCAG 59.231 41.667 0.00 0.00 0.00 3.02
1957 9038 4.082026 GGACATGTTTGGGAGAATTTCAGG 60.082 45.833 0.00 0.00 0.00 3.86
1958 9039 4.482990 ACATGTTTGGGAGAATTTCAGGT 58.517 39.130 0.00 0.00 0.00 4.00
1959 9040 4.281688 ACATGTTTGGGAGAATTTCAGGTG 59.718 41.667 0.00 0.00 0.00 4.00
1960 9041 2.627699 TGTTTGGGAGAATTTCAGGTGC 59.372 45.455 0.00 0.00 0.00 5.01
1961 9042 2.893489 GTTTGGGAGAATTTCAGGTGCT 59.107 45.455 0.00 0.00 0.00 4.40
1962 9043 2.496899 TGGGAGAATTTCAGGTGCTC 57.503 50.000 0.00 0.00 0.00 4.26
1963 9044 1.004745 TGGGAGAATTTCAGGTGCTCC 59.995 52.381 0.00 0.00 43.40 4.70
1964 9045 1.756430 GGAGAATTTCAGGTGCTCCC 58.244 55.000 0.00 0.00 39.33 4.30
1965 9046 1.004745 GGAGAATTTCAGGTGCTCCCA 59.995 52.381 0.00 0.00 39.33 4.37
1966 9047 2.087646 GAGAATTTCAGGTGCTCCCAC 58.912 52.381 0.00 0.00 41.32 4.61
1967 9048 1.425066 AGAATTTCAGGTGCTCCCACA 59.575 47.619 0.00 0.00 43.88 4.17
1968 9049 1.541588 GAATTTCAGGTGCTCCCACAC 59.458 52.381 0.00 0.00 43.88 3.82
1974 9055 4.394712 GTGCTCCCACACCTCCCG 62.395 72.222 0.00 0.00 41.67 5.14
1975 9056 4.954118 TGCTCCCACACCTCCCGT 62.954 66.667 0.00 0.00 0.00 5.28
1985 9066 0.250038 CACCTCCCGTGCTATGATGG 60.250 60.000 0.00 0.00 35.18 3.51
1989 9070 0.671796 TCCCGTGCTATGATGGTACG 59.328 55.000 12.02 12.02 41.14 3.67
1996 9077 2.168496 GCTATGATGGTACGGGAGCTA 58.832 52.381 0.00 0.00 0.00 3.32
2000 9081 1.064240 TGATGGTACGGGAGCTAGTGA 60.064 52.381 0.00 0.00 0.00 3.41
2001 9082 1.609555 GATGGTACGGGAGCTAGTGAG 59.390 57.143 0.00 0.00 0.00 3.51
2002 9083 0.330604 TGGTACGGGAGCTAGTGAGT 59.669 55.000 0.00 0.00 0.00 3.41
2003 9084 1.272313 TGGTACGGGAGCTAGTGAGTT 60.272 52.381 0.00 0.00 0.00 3.01
2004 9085 1.823610 GGTACGGGAGCTAGTGAGTTT 59.176 52.381 0.00 0.00 0.00 2.66
2005 9086 2.416972 GGTACGGGAGCTAGTGAGTTTG 60.417 54.545 0.00 0.00 0.00 2.93
2006 9087 0.037232 ACGGGAGCTAGTGAGTTTGC 60.037 55.000 0.00 0.00 0.00 3.68
2007 9088 0.037326 CGGGAGCTAGTGAGTTTGCA 60.037 55.000 0.00 0.00 0.00 4.08
2008 9089 1.443802 GGGAGCTAGTGAGTTTGCAC 58.556 55.000 0.00 0.00 39.05 4.57
2010 9091 2.494059 GGAGCTAGTGAGTTTGCACAA 58.506 47.619 0.00 0.00 41.19 3.33
2011 9092 2.878406 GGAGCTAGTGAGTTTGCACAAA 59.122 45.455 0.00 0.00 41.19 2.83
2029 9141 2.426738 CAAACTTGCAGAAACACCCTCA 59.573 45.455 0.00 0.00 0.00 3.86
2046 9158 4.294970 ACCCTCAAGGAGTCCCATAATTTT 59.705 41.667 5.25 0.00 39.89 1.82
2055 9167 5.221126 GGAGTCCCATAATTTTGTGCAGATC 60.221 44.000 0.00 0.00 0.00 2.75
2056 9168 5.513233 AGTCCCATAATTTTGTGCAGATCT 58.487 37.500 0.00 0.00 0.00 2.75
2070 9182 3.453717 TGCAGATCTAGAGGCTTCAACAT 59.546 43.478 13.08 0.00 0.00 2.71
2077 9189 3.695830 AGAGGCTTCAACATTAACCGA 57.304 42.857 0.00 0.00 0.00 4.69
2080 9192 3.938963 GAGGCTTCAACATTAACCGATCA 59.061 43.478 0.00 0.00 0.00 2.92
2083 9195 4.201822 GGCTTCAACATTAACCGATCAGTC 60.202 45.833 0.00 0.00 0.00 3.51
2097 9209 0.818445 TCAGTCTCCTATCCGACGGC 60.818 60.000 9.66 0.00 35.38 5.68
2109 9221 2.594592 GACGGCCCACAAGCACTT 60.595 61.111 0.00 0.00 0.00 3.16
2138 10109 2.354704 CGTAGCACCTGAAATTCTCCCA 60.355 50.000 0.00 0.00 0.00 4.37
2142 10113 2.785868 CCTGAAATTCTCCCAGGCG 58.214 57.895 0.00 0.00 40.69 5.52
2179 10150 8.547173 AGGAACCAAATAAAATGAAATGCCATA 58.453 29.630 0.00 0.00 0.00 2.74
2264 10235 5.220892 GGATTAAATCGGTTCCGTTTATGCA 60.221 40.000 11.04 0.00 0.00 3.96
2293 10265 1.407936 AGAGATGGGATGAGTCACGG 58.592 55.000 0.00 0.00 0.00 4.94
2317 10289 6.223852 GTTGATCCGGCTCATCTCTTTTATA 58.776 40.000 9.15 0.00 0.00 0.98
2322 10294 7.397892 TCCGGCTCATCTCTTTTATATAGAG 57.602 40.000 0.00 6.19 40.39 2.43
2362 10334 9.753674 CCCCCATATGTAATTGTTGTATAATCT 57.246 33.333 1.24 0.00 0.00 2.40
2481 10453 3.814625 TGATGCAAACACAACTACTGGA 58.185 40.909 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.096023 GGCTTGATGTATTCATGAACTAGTACG 60.096 40.741 11.07 0.00 33.34 3.67
1 2 7.710907 TGGCTTGATGTATTCATGAACTAGTAC 59.289 37.037 11.07 9.89 33.34 2.73
2 3 7.791029 TGGCTTGATGTATTCATGAACTAGTA 58.209 34.615 11.07 0.00 33.34 1.82
3 4 6.653020 TGGCTTGATGTATTCATGAACTAGT 58.347 36.000 11.07 0.00 33.34 2.57
4 5 7.094890 GGATGGCTTGATGTATTCATGAACTAG 60.095 40.741 11.07 5.30 33.34 2.57
5 6 6.712095 GGATGGCTTGATGTATTCATGAACTA 59.288 38.462 11.07 0.20 33.34 2.24
6 7 5.533903 GGATGGCTTGATGTATTCATGAACT 59.466 40.000 11.07 3.09 33.34 3.01
7 8 5.300034 TGGATGGCTTGATGTATTCATGAAC 59.700 40.000 11.07 0.00 33.34 3.18
8 9 5.447757 TGGATGGCTTGATGTATTCATGAA 58.552 37.500 11.26 11.26 33.34 2.57
9 10 5.051409 TGGATGGCTTGATGTATTCATGA 57.949 39.130 0.00 0.00 33.34 3.07
10 11 5.243060 ACATGGATGGCTTGATGTATTCATG 59.757 40.000 0.00 0.00 33.34 3.07
11 12 5.391256 ACATGGATGGCTTGATGTATTCAT 58.609 37.500 0.00 0.00 33.34 2.57
12 13 4.795469 ACATGGATGGCTTGATGTATTCA 58.205 39.130 0.00 0.00 0.00 2.57
13 14 5.106948 CGTACATGGATGGCTTGATGTATTC 60.107 44.000 0.00 0.00 34.63 1.75
14 15 4.756642 CGTACATGGATGGCTTGATGTATT 59.243 41.667 0.00 0.00 34.63 1.89
15 16 4.202357 ACGTACATGGATGGCTTGATGTAT 60.202 41.667 1.31 0.00 34.63 2.29
16 17 3.133901 ACGTACATGGATGGCTTGATGTA 59.866 43.478 1.31 0.00 31.56 2.29
17 18 2.092968 ACGTACATGGATGGCTTGATGT 60.093 45.455 1.31 0.00 33.64 3.06
18 19 2.545526 GACGTACATGGATGGCTTGATG 59.454 50.000 1.31 0.00 0.00 3.07
19 20 2.485479 GGACGTACATGGATGGCTTGAT 60.485 50.000 2.14 0.00 0.00 2.57
20 21 1.134521 GGACGTACATGGATGGCTTGA 60.135 52.381 2.14 0.00 0.00 3.02
21 22 1.299541 GGACGTACATGGATGGCTTG 58.700 55.000 2.14 0.00 0.00 4.01
22 23 0.179084 CGGACGTACATGGATGGCTT 60.179 55.000 2.14 0.00 0.00 4.35
23 24 1.327690 ACGGACGTACATGGATGGCT 61.328 55.000 2.14 0.00 0.00 4.75
24 25 1.143183 ACGGACGTACATGGATGGC 59.857 57.895 1.31 0.00 0.00 4.40
25 26 0.174845 ACACGGACGTACATGGATGG 59.825 55.000 0.00 0.00 0.00 3.51
26 27 1.134367 AGACACGGACGTACATGGATG 59.866 52.381 0.00 0.00 0.00 3.51
27 28 1.471119 AGACACGGACGTACATGGAT 58.529 50.000 0.00 0.00 0.00 3.41
28 29 1.200716 GAAGACACGGACGTACATGGA 59.799 52.381 0.00 0.00 0.00 3.41
29 30 1.625616 GAAGACACGGACGTACATGG 58.374 55.000 0.00 0.00 0.00 3.66
30 31 1.625616 GGAAGACACGGACGTACATG 58.374 55.000 0.00 0.00 0.00 3.21
31 32 0.169672 CGGAAGACACGGACGTACAT 59.830 55.000 0.00 0.00 0.00 2.29
32 33 1.575922 CGGAAGACACGGACGTACA 59.424 57.895 0.00 0.00 0.00 2.90
33 34 4.447365 CGGAAGACACGGACGTAC 57.553 61.111 0.00 0.00 0.00 3.67
40 41 0.249741 AAGTTCCACCGGAAGACACG 60.250 55.000 9.46 0.00 42.88 4.49
41 42 1.963172 AAAGTTCCACCGGAAGACAC 58.037 50.000 9.46 5.69 42.88 3.67
42 43 3.842007 TTAAAGTTCCACCGGAAGACA 57.158 42.857 9.46 0.00 42.88 3.41
43 44 3.688185 GGATTAAAGTTCCACCGGAAGAC 59.312 47.826 9.46 0.61 42.88 3.01
44 45 3.585732 AGGATTAAAGTTCCACCGGAAGA 59.414 43.478 9.46 0.00 42.88 2.87
45 46 3.939592 GAGGATTAAAGTTCCACCGGAAG 59.060 47.826 9.46 0.00 42.88 3.46
46 47 3.328343 TGAGGATTAAAGTTCCACCGGAA 59.672 43.478 9.46 0.00 39.66 4.30
47 48 2.907696 TGAGGATTAAAGTTCCACCGGA 59.092 45.455 9.46 0.00 35.59 5.14
48 49 3.270877 CTGAGGATTAAAGTTCCACCGG 58.729 50.000 0.00 0.00 35.59 5.28
49 50 3.933332 GACTGAGGATTAAAGTTCCACCG 59.067 47.826 0.00 0.00 35.59 4.94
50 51 3.933332 CGACTGAGGATTAAAGTTCCACC 59.067 47.826 0.00 0.00 35.59 4.61
51 52 3.933332 CCGACTGAGGATTAAAGTTCCAC 59.067 47.826 0.00 0.00 35.59 4.02
52 53 3.581332 ACCGACTGAGGATTAAAGTTCCA 59.419 43.478 0.00 0.00 35.59 3.53
53 54 3.933332 CACCGACTGAGGATTAAAGTTCC 59.067 47.826 1.40 0.00 34.73 3.62
54 55 3.371285 GCACCGACTGAGGATTAAAGTTC 59.629 47.826 1.40 0.00 34.73 3.01
55 56 3.008049 AGCACCGACTGAGGATTAAAGTT 59.992 43.478 1.40 0.00 34.73 2.66
56 57 2.567615 AGCACCGACTGAGGATTAAAGT 59.432 45.455 1.40 0.00 34.73 2.66
57 58 3.190874 GAGCACCGACTGAGGATTAAAG 58.809 50.000 1.40 0.00 34.73 1.85
58 59 2.416836 CGAGCACCGACTGAGGATTAAA 60.417 50.000 1.40 0.00 41.76 1.52
59 60 1.134367 CGAGCACCGACTGAGGATTAA 59.866 52.381 1.40 0.00 41.76 1.40
60 61 0.738975 CGAGCACCGACTGAGGATTA 59.261 55.000 1.40 0.00 41.76 1.75
61 62 1.251527 ACGAGCACCGACTGAGGATT 61.252 55.000 5.53 0.00 41.76 3.01
62 63 1.658686 GACGAGCACCGACTGAGGAT 61.659 60.000 5.53 0.00 41.76 3.24
63 64 2.282251 ACGAGCACCGACTGAGGA 60.282 61.111 5.53 0.00 41.76 3.71
64 65 2.142357 TTGACGAGCACCGACTGAGG 62.142 60.000 5.53 0.00 41.76 3.86
65 66 1.004277 GTTGACGAGCACCGACTGAG 61.004 60.000 5.53 0.00 41.76 3.35
66 67 1.007734 GTTGACGAGCACCGACTGA 60.008 57.895 5.53 0.00 41.76 3.41
67 68 0.667487 ATGTTGACGAGCACCGACTG 60.667 55.000 5.53 0.00 41.76 3.51
68 69 0.388649 GATGTTGACGAGCACCGACT 60.389 55.000 5.53 0.00 41.76 4.18
69 70 0.666274 TGATGTTGACGAGCACCGAC 60.666 55.000 5.53 0.18 41.76 4.79
70 71 0.246360 ATGATGTTGACGAGCACCGA 59.754 50.000 5.53 0.00 41.76 4.69
71 72 0.647410 GATGATGTTGACGAGCACCG 59.353 55.000 0.00 0.00 45.44 4.94
72 73 0.647410 CGATGATGTTGACGAGCACC 59.353 55.000 0.00 0.00 0.00 5.01
73 74 1.059692 CACGATGATGTTGACGAGCAC 59.940 52.381 0.00 0.00 0.00 4.40
74 75 1.067915 TCACGATGATGTTGACGAGCA 60.068 47.619 0.00 0.00 0.00 4.26
75 76 1.629013 TCACGATGATGTTGACGAGC 58.371 50.000 0.00 0.00 0.00 5.03
76 77 4.798387 TGTATTCACGATGATGTTGACGAG 59.202 41.667 0.00 0.00 0.00 4.18
77 78 4.739195 TGTATTCACGATGATGTTGACGA 58.261 39.130 0.00 0.00 0.00 4.20
78 79 4.798387 TCTGTATTCACGATGATGTTGACG 59.202 41.667 0.00 0.00 0.00 4.35
79 80 6.647212 TTCTGTATTCACGATGATGTTGAC 57.353 37.500 0.00 0.00 0.00 3.18
80 81 5.291858 GCTTCTGTATTCACGATGATGTTGA 59.708 40.000 0.00 0.00 0.00 3.18
81 82 5.292834 AGCTTCTGTATTCACGATGATGTTG 59.707 40.000 0.00 0.00 0.00 3.33
82 83 5.423015 AGCTTCTGTATTCACGATGATGTT 58.577 37.500 0.00 0.00 0.00 2.71
83 84 5.016051 AGCTTCTGTATTCACGATGATGT 57.984 39.130 0.00 0.00 0.00 3.06
84 85 4.147826 CGAGCTTCTGTATTCACGATGATG 59.852 45.833 0.00 0.00 0.00 3.07
85 86 4.202060 ACGAGCTTCTGTATTCACGATGAT 60.202 41.667 0.00 0.00 0.00 2.45
86 87 3.128764 ACGAGCTTCTGTATTCACGATGA 59.871 43.478 0.00 0.00 0.00 2.92
87 88 3.439293 ACGAGCTTCTGTATTCACGATG 58.561 45.455 0.00 0.00 0.00 3.84
88 89 3.128764 TGACGAGCTTCTGTATTCACGAT 59.871 43.478 0.00 0.00 0.00 3.73
89 90 2.486592 TGACGAGCTTCTGTATTCACGA 59.513 45.455 0.00 0.00 0.00 4.35
90 91 2.863739 TGACGAGCTTCTGTATTCACG 58.136 47.619 0.00 0.00 0.00 4.35
91 92 4.238514 AGTTGACGAGCTTCTGTATTCAC 58.761 43.478 0.00 0.00 0.00 3.18
92 93 4.486090 GAGTTGACGAGCTTCTGTATTCA 58.514 43.478 0.00 0.00 0.00 2.57
93 94 3.544285 CGAGTTGACGAGCTTCTGTATTC 59.456 47.826 0.00 0.00 35.09 1.75
94 95 3.502920 CGAGTTGACGAGCTTCTGTATT 58.497 45.455 0.00 0.00 35.09 1.89
95 96 2.732597 GCGAGTTGACGAGCTTCTGTAT 60.733 50.000 0.00 0.00 35.09 2.29
96 97 1.401148 GCGAGTTGACGAGCTTCTGTA 60.401 52.381 0.00 0.00 35.09 2.74
97 98 0.664767 GCGAGTTGACGAGCTTCTGT 60.665 55.000 0.00 0.00 35.09 3.41
98 99 1.347817 GGCGAGTTGACGAGCTTCTG 61.348 60.000 0.00 0.00 35.09 3.02
99 100 1.080434 GGCGAGTTGACGAGCTTCT 60.080 57.895 0.00 0.00 35.09 2.85
100 101 3.464628 GGCGAGTTGACGAGCTTC 58.535 61.111 0.00 0.00 35.09 3.86
107 108 1.782028 AAAGTTGGCGGCGAGTTGAC 61.782 55.000 19.18 0.74 0.00 3.18
108 109 1.503818 GAAAGTTGGCGGCGAGTTGA 61.504 55.000 19.18 0.00 0.00 3.18
109 110 1.082104 GAAAGTTGGCGGCGAGTTG 60.082 57.895 19.18 0.00 0.00 3.16
110 111 2.258726 GGAAAGTTGGCGGCGAGTT 61.259 57.895 12.98 13.33 0.00 3.01
111 112 2.668550 GGAAAGTTGGCGGCGAGT 60.669 61.111 12.98 1.61 0.00 4.18
112 113 2.668212 TGGAAAGTTGGCGGCGAG 60.668 61.111 12.98 0.00 0.00 5.03
113 114 2.668212 CTGGAAAGTTGGCGGCGA 60.668 61.111 12.98 0.00 0.00 5.54
114 115 3.737172 CCTGGAAAGTTGGCGGCG 61.737 66.667 0.51 0.51 0.00 6.46
115 116 2.282180 TCCTGGAAAGTTGGCGGC 60.282 61.111 0.00 0.00 0.00 6.53
116 117 1.675641 CCTCCTGGAAAGTTGGCGG 60.676 63.158 0.00 0.00 34.57 6.13
117 118 0.035056 ATCCTCCTGGAAAGTTGGCG 60.035 55.000 0.00 0.00 46.80 5.69
118 119 1.756430 GATCCTCCTGGAAAGTTGGC 58.244 55.000 0.00 0.00 46.80 4.52
119 120 1.555075 TCGATCCTCCTGGAAAGTTGG 59.445 52.381 0.00 0.00 46.80 3.77
120 121 2.622436 GTCGATCCTCCTGGAAAGTTG 58.378 52.381 0.00 0.00 46.80 3.16
121 122 1.555533 GGTCGATCCTCCTGGAAAGTT 59.444 52.381 0.00 0.00 46.80 2.66
122 123 1.196012 GGTCGATCCTCCTGGAAAGT 58.804 55.000 0.00 0.00 46.80 2.66
123 124 0.466124 GGGTCGATCCTCCTGGAAAG 59.534 60.000 7.71 0.00 46.80 2.62
124 125 0.981277 GGGGTCGATCCTCCTGGAAA 60.981 60.000 15.87 0.00 46.80 3.13
125 126 1.382695 GGGGTCGATCCTCCTGGAA 60.383 63.158 15.87 0.00 46.80 3.53
127 128 3.227276 CGGGGTCGATCCTCCTGG 61.227 72.222 15.87 0.00 39.00 4.45
128 129 2.123854 TCGGGGTCGATCCTCCTG 60.124 66.667 15.87 7.08 40.88 3.86
137 138 0.321671 ATCAATGGCTATCGGGGTCG 59.678 55.000 0.00 0.00 37.82 4.79
138 139 1.347707 TGATCAATGGCTATCGGGGTC 59.652 52.381 0.00 0.00 0.00 4.46
139 140 1.349026 CTGATCAATGGCTATCGGGGT 59.651 52.381 0.00 0.00 0.00 4.95
140 141 1.339438 CCTGATCAATGGCTATCGGGG 60.339 57.143 0.00 0.00 42.62 5.73
141 142 1.625315 TCCTGATCAATGGCTATCGGG 59.375 52.381 0.00 4.14 46.14 5.14
142 143 2.564504 TCTCCTGATCAATGGCTATCGG 59.435 50.000 0.00 0.00 0.00 4.18
143 144 3.949842 TCTCCTGATCAATGGCTATCG 57.050 47.619 0.00 0.00 0.00 2.92
144 145 6.294473 TCTTTTCTCCTGATCAATGGCTATC 58.706 40.000 0.00 0.00 0.00 2.08
145 146 6.100859 TCTCTTTTCTCCTGATCAATGGCTAT 59.899 38.462 0.00 0.00 0.00 2.97
146 147 5.426509 TCTCTTTTCTCCTGATCAATGGCTA 59.573 40.000 0.00 0.00 0.00 3.93
147 148 4.226846 TCTCTTTTCTCCTGATCAATGGCT 59.773 41.667 0.00 0.00 0.00 4.75
148 149 4.521146 TCTCTTTTCTCCTGATCAATGGC 58.479 43.478 0.00 0.00 0.00 4.40
149 150 6.354938 TCATCTCTTTTCTCCTGATCAATGG 58.645 40.000 0.00 0.00 0.00 3.16
150 151 7.273712 TCTCATCTCTTTTCTCCTGATCAATG 58.726 38.462 0.00 0.00 0.00 2.82
151 152 7.434927 TCTCATCTCTTTTCTCCTGATCAAT 57.565 36.000 0.00 0.00 0.00 2.57
152 153 6.629963 GCTCTCATCTCTTTTCTCCTGATCAA 60.630 42.308 0.00 0.00 0.00 2.57
153 154 5.163426 GCTCTCATCTCTTTTCTCCTGATCA 60.163 44.000 0.00 0.00 0.00 2.92
154 155 5.291971 GCTCTCATCTCTTTTCTCCTGATC 58.708 45.833 0.00 0.00 0.00 2.92
155 156 4.202141 CGCTCTCATCTCTTTTCTCCTGAT 60.202 45.833 0.00 0.00 0.00 2.90
156 157 3.130164 CGCTCTCATCTCTTTTCTCCTGA 59.870 47.826 0.00 0.00 0.00 3.86
157 158 3.130164 TCGCTCTCATCTCTTTTCTCCTG 59.870 47.826 0.00 0.00 0.00 3.86
158 159 3.360867 TCGCTCTCATCTCTTTTCTCCT 58.639 45.455 0.00 0.00 0.00 3.69
159 160 3.490761 CCTCGCTCTCATCTCTTTTCTCC 60.491 52.174 0.00 0.00 0.00 3.71
160 161 3.380004 TCCTCGCTCTCATCTCTTTTCTC 59.620 47.826 0.00 0.00 0.00 2.87
161 162 3.360867 TCCTCGCTCTCATCTCTTTTCT 58.639 45.455 0.00 0.00 0.00 2.52
162 163 3.791973 TCCTCGCTCTCATCTCTTTTC 57.208 47.619 0.00 0.00 0.00 2.29
163 164 3.766591 TCTTCCTCGCTCTCATCTCTTTT 59.233 43.478 0.00 0.00 0.00 2.27
164 165 3.360867 TCTTCCTCGCTCTCATCTCTTT 58.639 45.455 0.00 0.00 0.00 2.52
165 166 3.011566 TCTTCCTCGCTCTCATCTCTT 57.988 47.619 0.00 0.00 0.00 2.85
166 167 2.687935 GTTCTTCCTCGCTCTCATCTCT 59.312 50.000 0.00 0.00 0.00 3.10
167 168 2.425312 TGTTCTTCCTCGCTCTCATCTC 59.575 50.000 0.00 0.00 0.00 2.75
168 169 2.451490 TGTTCTTCCTCGCTCTCATCT 58.549 47.619 0.00 0.00 0.00 2.90
169 170 2.949451 TGTTCTTCCTCGCTCTCATC 57.051 50.000 0.00 0.00 0.00 2.92
170 171 2.158986 CCATGTTCTTCCTCGCTCTCAT 60.159 50.000 0.00 0.00 0.00 2.90
171 172 1.205655 CCATGTTCTTCCTCGCTCTCA 59.794 52.381 0.00 0.00 0.00 3.27
172 173 1.933247 CCATGTTCTTCCTCGCTCTC 58.067 55.000 0.00 0.00 0.00 3.20
173 174 0.107945 GCCATGTTCTTCCTCGCTCT 60.108 55.000 0.00 0.00 0.00 4.09
174 175 0.107945 AGCCATGTTCTTCCTCGCTC 60.108 55.000 0.00 0.00 0.00 5.03
175 176 0.326264 AAGCCATGTTCTTCCTCGCT 59.674 50.000 0.00 0.00 0.00 4.93
176 177 0.449388 CAAGCCATGTTCTTCCTCGC 59.551 55.000 0.00 0.00 0.00 5.03
177 178 1.089920 CCAAGCCATGTTCTTCCTCG 58.910 55.000 0.00 0.00 0.00 4.63
178 179 0.813821 GCCAAGCCATGTTCTTCCTC 59.186 55.000 0.00 0.00 0.00 3.71
179 180 2.967270 GCCAAGCCATGTTCTTCCT 58.033 52.632 0.00 0.00 0.00 3.36
191 192 2.356194 CTTTTGTGCGGGCCAAGC 60.356 61.111 14.68 14.68 0.00 4.01
192 193 1.300080 CACTTTTGTGCGGGCCAAG 60.300 57.895 4.39 0.00 44.07 3.61
193 194 2.811101 CACTTTTGTGCGGGCCAA 59.189 55.556 4.39 0.00 44.07 4.52
212 213 0.179040 TGACCGGGAACTCGCTTTTT 60.179 50.000 6.32 0.00 0.00 1.94
213 214 0.602905 CTGACCGGGAACTCGCTTTT 60.603 55.000 6.32 0.00 0.00 2.27
214 215 1.004918 CTGACCGGGAACTCGCTTT 60.005 57.895 6.32 0.00 0.00 3.51
215 216 2.657237 CTGACCGGGAACTCGCTT 59.343 61.111 6.32 0.00 0.00 4.68
216 217 3.382832 CCTGACCGGGAACTCGCT 61.383 66.667 6.32 0.00 0.00 4.93
217 218 2.240162 AATCCTGACCGGGAACTCGC 62.240 60.000 6.32 0.00 39.02 5.03
218 219 0.460284 CAATCCTGACCGGGAACTCG 60.460 60.000 6.32 0.00 39.02 4.18
219 220 0.613777 ACAATCCTGACCGGGAACTC 59.386 55.000 6.32 0.00 39.02 3.01
220 221 0.324943 CACAATCCTGACCGGGAACT 59.675 55.000 6.32 0.00 39.02 3.01
221 222 1.305930 GCACAATCCTGACCGGGAAC 61.306 60.000 6.32 0.00 39.02 3.62
222 223 1.002624 GCACAATCCTGACCGGGAA 60.003 57.895 6.32 0.00 39.02 3.97
223 224 1.488705 AAGCACAATCCTGACCGGGA 61.489 55.000 6.32 0.00 39.95 5.14
224 225 0.609131 AAAGCACAATCCTGACCGGG 60.609 55.000 6.32 0.00 0.00 5.73
225 226 1.247567 AAAAGCACAATCCTGACCGG 58.752 50.000 0.00 0.00 0.00 5.28
226 227 2.351738 GGAAAAAGCACAATCCTGACCG 60.352 50.000 0.00 0.00 0.00 4.79
227 228 2.351738 CGGAAAAAGCACAATCCTGACC 60.352 50.000 0.00 0.00 0.00 4.02
228 229 2.351738 CCGGAAAAAGCACAATCCTGAC 60.352 50.000 0.00 0.00 0.00 3.51
229 230 1.885887 CCGGAAAAAGCACAATCCTGA 59.114 47.619 0.00 0.00 0.00 3.86
230 231 1.613437 ACCGGAAAAAGCACAATCCTG 59.387 47.619 9.46 0.00 0.00 3.86
231 232 1.613437 CACCGGAAAAAGCACAATCCT 59.387 47.619 9.46 0.00 0.00 3.24
232 233 1.339929 ACACCGGAAAAAGCACAATCC 59.660 47.619 9.46 0.00 0.00 3.01
233 234 2.223711 ACACACCGGAAAAAGCACAATC 60.224 45.455 9.46 0.00 0.00 2.67
234 235 1.754226 ACACACCGGAAAAAGCACAAT 59.246 42.857 9.46 0.00 0.00 2.71
235 236 1.133407 GACACACCGGAAAAAGCACAA 59.867 47.619 9.46 0.00 0.00 3.33
236 237 0.736053 GACACACCGGAAAAAGCACA 59.264 50.000 9.46 0.00 0.00 4.57
237 238 0.736053 TGACACACCGGAAAAAGCAC 59.264 50.000 9.46 0.00 0.00 4.40
238 239 1.464734 TTGACACACCGGAAAAAGCA 58.535 45.000 9.46 0.00 0.00 3.91
239 240 2.570442 TTTGACACACCGGAAAAAGC 57.430 45.000 9.46 0.00 0.00 3.51
240 241 7.985476 AGATATATTTGACACACCGGAAAAAG 58.015 34.615 9.46 0.00 0.00 2.27
241 242 7.931578 AGATATATTTGACACACCGGAAAAA 57.068 32.000 9.46 0.00 0.00 1.94
242 243 9.104965 CTTAGATATATTTGACACACCGGAAAA 57.895 33.333 9.46 0.00 0.00 2.29
243 244 7.713507 CCTTAGATATATTTGACACACCGGAAA 59.286 37.037 9.46 0.00 0.00 3.13
244 245 7.147620 ACCTTAGATATATTTGACACACCGGAA 60.148 37.037 9.46 0.00 0.00 4.30
245 246 6.325545 ACCTTAGATATATTTGACACACCGGA 59.674 38.462 9.46 0.00 0.00 5.14
246 247 6.522054 ACCTTAGATATATTTGACACACCGG 58.478 40.000 0.00 0.00 0.00 5.28
247 248 6.362551 CGACCTTAGATATATTTGACACACCG 59.637 42.308 0.00 0.00 0.00 4.94
248 249 6.645415 CCGACCTTAGATATATTTGACACACC 59.355 42.308 0.00 0.00 0.00 4.16
249 250 6.645415 CCCGACCTTAGATATATTTGACACAC 59.355 42.308 0.00 0.00 0.00 3.82
250 251 6.551975 TCCCGACCTTAGATATATTTGACACA 59.448 38.462 0.00 0.00 0.00 3.72
251 252 6.989659 TCCCGACCTTAGATATATTTGACAC 58.010 40.000 0.00 0.00 0.00 3.67
252 253 7.792364 ATCCCGACCTTAGATATATTTGACA 57.208 36.000 0.00 0.00 0.00 3.58
253 254 9.186837 TCTATCCCGACCTTAGATATATTTGAC 57.813 37.037 0.00 0.00 0.00 3.18
254 255 9.186837 GTCTATCCCGACCTTAGATATATTTGA 57.813 37.037 0.00 0.00 0.00 2.69
272 273 2.300437 CTCTTTGATCCCGGTCTATCCC 59.700 54.545 0.00 0.00 0.00 3.85
273 274 2.300437 CCTCTTTGATCCCGGTCTATCC 59.700 54.545 0.00 0.00 0.00 2.59
274 275 2.966516 ACCTCTTTGATCCCGGTCTATC 59.033 50.000 0.00 0.90 0.00 2.08
275 276 2.966516 GACCTCTTTGATCCCGGTCTAT 59.033 50.000 0.00 0.00 40.67 1.98
276 277 2.291996 TGACCTCTTTGATCCCGGTCTA 60.292 50.000 0.00 0.00 43.45 2.59
277 278 1.196012 GACCTCTTTGATCCCGGTCT 58.804 55.000 0.00 0.00 40.67 3.85
278 279 0.902531 TGACCTCTTTGATCCCGGTC 59.097 55.000 0.00 0.00 43.37 4.79
279 280 0.905357 CTGACCTCTTTGATCCCGGT 59.095 55.000 0.00 0.00 0.00 5.28
280 281 0.179000 CCTGACCTCTTTGATCCCGG 59.821 60.000 0.00 0.00 0.00 5.73
281 282 0.179000 CCCTGACCTCTTTGATCCCG 59.821 60.000 0.00 0.00 0.00 5.14
282 283 1.290134 ACCCTGACCTCTTTGATCCC 58.710 55.000 0.00 0.00 0.00 3.85
283 284 3.711704 TGATACCCTGACCTCTTTGATCC 59.288 47.826 0.00 0.00 0.00 3.36
284 285 5.104735 AGTTGATACCCTGACCTCTTTGATC 60.105 44.000 0.00 0.00 0.00 2.92
285 286 4.785376 AGTTGATACCCTGACCTCTTTGAT 59.215 41.667 0.00 0.00 0.00 2.57
286 287 4.168101 AGTTGATACCCTGACCTCTTTGA 58.832 43.478 0.00 0.00 0.00 2.69
287 288 4.559862 AGTTGATACCCTGACCTCTTTG 57.440 45.455 0.00 0.00 0.00 2.77
288 289 4.597507 TGAAGTTGATACCCTGACCTCTTT 59.402 41.667 0.00 0.00 0.00 2.52
289 290 4.168101 TGAAGTTGATACCCTGACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
290 291 3.791320 TGAAGTTGATACCCTGACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
291 292 4.508662 CTTGAAGTTGATACCCTGACCTC 58.491 47.826 0.00 0.00 0.00 3.85
292 293 3.264450 CCTTGAAGTTGATACCCTGACCT 59.736 47.826 0.00 0.00 0.00 3.85
293 294 3.263425 TCCTTGAAGTTGATACCCTGACC 59.737 47.826 0.00 0.00 0.00 4.02
294 295 4.553330 TCCTTGAAGTTGATACCCTGAC 57.447 45.455 0.00 0.00 0.00 3.51
295 296 5.779241 AATCCTTGAAGTTGATACCCTGA 57.221 39.130 0.00 0.00 0.00 3.86
296 297 5.945784 TCAAATCCTTGAAGTTGATACCCTG 59.054 40.000 0.00 0.00 38.65 4.45
297 298 6.139679 TCAAATCCTTGAAGTTGATACCCT 57.860 37.500 0.00 0.00 38.65 4.34
298 299 6.834168 TTCAAATCCTTGAAGTTGATACCC 57.166 37.500 0.00 0.00 44.76 3.69
308 309 5.215252 ACTCTCGTCTTCAAATCCTTGAA 57.785 39.130 0.77 0.77 46.88 2.69
309 310 4.873746 ACTCTCGTCTTCAAATCCTTGA 57.126 40.909 0.00 0.00 39.87 3.02
310 311 4.991056 TGAACTCTCGTCTTCAAATCCTTG 59.009 41.667 0.00 0.00 0.00 3.61
311 312 5.215252 TGAACTCTCGTCTTCAAATCCTT 57.785 39.130 0.00 0.00 0.00 3.36
312 313 4.873746 TGAACTCTCGTCTTCAAATCCT 57.126 40.909 0.00 0.00 0.00 3.24
313 314 6.310197 CAAATGAACTCTCGTCTTCAAATCC 58.690 40.000 0.00 0.00 30.32 3.01
314 315 5.792468 GCAAATGAACTCTCGTCTTCAAATC 59.208 40.000 0.00 0.00 30.32 2.17
315 316 5.615544 CGCAAATGAACTCTCGTCTTCAAAT 60.616 40.000 0.00 0.00 30.32 2.32
316 317 4.318760 CGCAAATGAACTCTCGTCTTCAAA 60.319 41.667 0.00 0.00 30.32 2.69
317 318 3.184379 CGCAAATGAACTCTCGTCTTCAA 59.816 43.478 0.00 0.00 30.32 2.69
318 319 2.731451 CGCAAATGAACTCTCGTCTTCA 59.269 45.455 0.00 0.00 0.00 3.02
319 320 2.731976 ACGCAAATGAACTCTCGTCTTC 59.268 45.455 0.00 0.00 0.00 2.87
320 321 2.755650 ACGCAAATGAACTCTCGTCTT 58.244 42.857 0.00 0.00 0.00 3.01
321 322 2.440539 ACGCAAATGAACTCTCGTCT 57.559 45.000 0.00 0.00 0.00 4.18
322 323 2.411547 CCAACGCAAATGAACTCTCGTC 60.412 50.000 0.00 0.00 0.00 4.20
323 324 1.531149 CCAACGCAAATGAACTCTCGT 59.469 47.619 0.00 0.00 0.00 4.18
324 325 1.725931 GCCAACGCAAATGAACTCTCG 60.726 52.381 0.00 0.00 34.03 4.04
325 326 1.401539 GGCCAACGCAAATGAACTCTC 60.402 52.381 0.00 0.00 36.38 3.20
326 327 0.598065 GGCCAACGCAAATGAACTCT 59.402 50.000 0.00 0.00 36.38 3.24
327 328 0.598065 AGGCCAACGCAAATGAACTC 59.402 50.000 5.01 0.00 36.38 3.01
328 329 0.598065 GAGGCCAACGCAAATGAACT 59.402 50.000 5.01 0.00 36.38 3.01
329 330 0.598065 AGAGGCCAACGCAAATGAAC 59.402 50.000 5.01 0.00 36.38 3.18
330 331 1.810151 GTAGAGGCCAACGCAAATGAA 59.190 47.619 5.01 0.00 36.38 2.57
331 332 1.271108 TGTAGAGGCCAACGCAAATGA 60.271 47.619 5.01 0.00 36.38 2.57
332 333 1.164411 TGTAGAGGCCAACGCAAATG 58.836 50.000 5.01 0.00 36.38 2.32
333 334 1.904287 TTGTAGAGGCCAACGCAAAT 58.096 45.000 5.01 0.00 36.38 2.32
334 335 1.810151 GATTGTAGAGGCCAACGCAAA 59.190 47.619 5.01 0.00 36.38 3.68
335 336 1.003118 AGATTGTAGAGGCCAACGCAA 59.997 47.619 5.01 10.00 36.38 4.85
336 337 0.613260 AGATTGTAGAGGCCAACGCA 59.387 50.000 5.01 0.93 36.38 5.24
337 338 1.739067 AAGATTGTAGAGGCCAACGC 58.261 50.000 5.01 0.00 0.00 4.84
338 339 4.755411 TCTTAAGATTGTAGAGGCCAACG 58.245 43.478 5.01 0.00 0.00 4.10
339 340 7.631717 AAATCTTAAGATTGTAGAGGCCAAC 57.368 36.000 27.25 0.00 43.41 3.77
340 341 9.920946 AATAAATCTTAAGATTGTAGAGGCCAA 57.079 29.630 27.25 7.26 43.41 4.52
341 342 9.920946 AAATAAATCTTAAGATTGTAGAGGCCA 57.079 29.630 27.25 8.24 43.41 5.36
360 361 9.489084 GGGCAAAAAGTGAAGTCTAAAATAAAT 57.511 29.630 0.00 0.00 0.00 1.40
361 362 7.929245 GGGGCAAAAAGTGAAGTCTAAAATAAA 59.071 33.333 0.00 0.00 0.00 1.40
362 363 7.070074 TGGGGCAAAAAGTGAAGTCTAAAATAA 59.930 33.333 0.00 0.00 0.00 1.40
363 364 6.551601 TGGGGCAAAAAGTGAAGTCTAAAATA 59.448 34.615 0.00 0.00 0.00 1.40
364 365 5.365314 TGGGGCAAAAAGTGAAGTCTAAAAT 59.635 36.000 0.00 0.00 0.00 1.82
365 366 4.712337 TGGGGCAAAAAGTGAAGTCTAAAA 59.288 37.500 0.00 0.00 0.00 1.52
366 367 4.098807 GTGGGGCAAAAAGTGAAGTCTAAA 59.901 41.667 0.00 0.00 0.00 1.85
367 368 3.634910 GTGGGGCAAAAAGTGAAGTCTAA 59.365 43.478 0.00 0.00 0.00 2.10
368 369 3.117663 AGTGGGGCAAAAAGTGAAGTCTA 60.118 43.478 0.00 0.00 0.00 2.59
369 370 2.031870 GTGGGGCAAAAAGTGAAGTCT 58.968 47.619 0.00 0.00 0.00 3.24
370 371 2.031870 AGTGGGGCAAAAAGTGAAGTC 58.968 47.619 0.00 0.00 0.00 3.01
371 372 2.159179 AGTGGGGCAAAAAGTGAAGT 57.841 45.000 0.00 0.00 0.00 3.01
372 373 3.541996 AAAGTGGGGCAAAAAGTGAAG 57.458 42.857 0.00 0.00 0.00 3.02
373 374 3.769844 TGTAAAGTGGGGCAAAAAGTGAA 59.230 39.130 0.00 0.00 0.00 3.18
374 375 3.366396 TGTAAAGTGGGGCAAAAAGTGA 58.634 40.909 0.00 0.00 0.00 3.41
375 376 3.810310 TGTAAAGTGGGGCAAAAAGTG 57.190 42.857 0.00 0.00 0.00 3.16
376 377 3.964031 TCATGTAAAGTGGGGCAAAAAGT 59.036 39.130 0.00 0.00 0.00 2.66
377 378 4.559153 CTCATGTAAAGTGGGGCAAAAAG 58.441 43.478 0.00 0.00 0.00 2.27
378 379 3.323403 CCTCATGTAAAGTGGGGCAAAAA 59.677 43.478 0.00 0.00 28.83 1.94
379 380 2.896685 CCTCATGTAAAGTGGGGCAAAA 59.103 45.455 0.00 0.00 28.83 2.44
387 388 8.863049 GCAAATTATCAAACCTCATGTAAAGTG 58.137 33.333 0.00 0.00 0.00 3.16
396 397 5.200483 CCTAGGGCAAATTATCAAACCTCA 58.800 41.667 0.00 0.00 0.00 3.86
398 399 4.016572 ACCCTAGGGCAAATTATCAAACCT 60.017 41.667 28.88 0.00 39.32 3.50
399 400 4.286707 ACCCTAGGGCAAATTATCAAACC 58.713 43.478 28.88 0.00 39.32 3.27
407 408 2.231716 GGACAACCCTAGGGCAAATT 57.768 50.000 28.88 11.85 39.32 1.82
423 424 1.182667 GGGCCACTTGTTATTGGGAC 58.817 55.000 4.39 0.00 33.01 4.46
431 432 3.494254 TGGTCGGGGCCACTTGTT 61.494 61.111 1.96 0.00 32.81 2.83
440 441 2.210144 ATTGATGGGTGTGGTCGGGG 62.210 60.000 0.00 0.00 0.00 5.73
448 449 1.224592 GCCCGAGATTGATGGGTGT 59.775 57.895 0.00 0.00 45.19 4.16
463 464 8.131731 GTGACTGAGAAAATAGATTATTTGCCC 58.868 37.037 0.00 0.00 38.32 5.36
491 492 2.356382 CAGGTCCGTTTTTAACTGTGCA 59.644 45.455 0.00 0.00 0.00 4.57
495 496 2.222445 CCGACAGGTCCGTTTTTAACTG 59.778 50.000 0.00 0.00 36.47 3.16
523 525 2.481185 GACAGCGATTGACCGGTAAAAA 59.519 45.455 7.34 2.64 38.28 1.94
635 638 2.300723 TCCTTCAAATTCGGAGAACGGA 59.699 45.455 0.00 0.00 45.90 4.69
784 787 6.037098 AGTAGTTGATCTTACAAGTCATCGC 58.963 40.000 0.00 0.00 35.45 4.58
929 941 1.280982 TGCGATTGCTTAGCTCTTCG 58.719 50.000 15.55 15.55 43.34 3.79
949 965 2.408271 ATGTTGGTGATCTGATGCGT 57.592 45.000 0.00 0.00 0.00 5.24
1297 1328 2.747460 GGCCATGAGCAGCGACAA 60.747 61.111 0.00 0.00 46.50 3.18
1491 8570 1.116536 TCTTGTACTCCACGGTGGCA 61.117 55.000 22.42 11.46 37.47 4.92
1559 8638 8.274322 TCAGGAAATCATATGTAGGAACAACAT 58.726 33.333 1.90 0.00 39.58 2.71
1620 8701 2.718663 TCGCCGTACAACACATATACG 58.281 47.619 0.00 0.00 41.01 3.06
1680 8761 9.308000 ACCAGATTGTATTTCATTCCAAAACTA 57.692 29.630 0.00 0.00 0.00 2.24
1723 8804 6.969043 ACATACAATATCAGACTTTTCCCCA 58.031 36.000 0.00 0.00 0.00 4.96
1724 8805 6.202954 CGACATACAATATCAGACTTTTCCCC 59.797 42.308 0.00 0.00 0.00 4.81
1725 8806 6.202954 CCGACATACAATATCAGACTTTTCCC 59.797 42.308 0.00 0.00 0.00 3.97
1726 8807 6.761714 ACCGACATACAATATCAGACTTTTCC 59.238 38.462 0.00 0.00 0.00 3.13
1727 8808 7.772332 ACCGACATACAATATCAGACTTTTC 57.228 36.000 0.00 0.00 0.00 2.29
1728 8809 8.561738 AAACCGACATACAATATCAGACTTTT 57.438 30.769 0.00 0.00 0.00 2.27
1729 8810 7.822334 TGAAACCGACATACAATATCAGACTTT 59.178 33.333 0.00 0.00 0.00 2.66
1730 8811 7.327975 TGAAACCGACATACAATATCAGACTT 58.672 34.615 0.00 0.00 0.00 3.01
1731 8812 6.873997 TGAAACCGACATACAATATCAGACT 58.126 36.000 0.00 0.00 0.00 3.24
1732 8813 7.715265 ATGAAACCGACATACAATATCAGAC 57.285 36.000 0.00 0.00 0.00 3.51
1733 8814 8.638873 AGTATGAAACCGACATACAATATCAGA 58.361 33.333 16.58 0.00 46.96 3.27
1734 8815 8.703336 CAGTATGAAACCGACATACAATATCAG 58.297 37.037 16.58 0.00 46.96 2.90
1735 8816 8.417884 TCAGTATGAAACCGACATACAATATCA 58.582 33.333 16.58 0.00 45.97 2.15
1736 8817 8.812147 TCAGTATGAAACCGACATACAATATC 57.188 34.615 16.58 0.00 45.97 1.63
1756 8837 2.497138 TGAAGTCGTCGGTCTTCAGTA 58.503 47.619 20.91 7.26 43.02 2.74
1774 8855 3.745799 TCTTGTGTTTTAGCGGGAATGA 58.254 40.909 0.00 0.00 0.00 2.57
1782 8863 4.451096 TCATCGGTCTTCTTGTGTTTTAGC 59.549 41.667 0.00 0.00 0.00 3.09
1785 8866 7.360361 GTTATTCATCGGTCTTCTTGTGTTTT 58.640 34.615 0.00 0.00 0.00 2.43
1806 8887 5.866335 TTTTTATCACTTGCGGTCGTTAT 57.134 34.783 0.00 0.00 0.00 1.89
1829 8910 2.398252 TCGTCGTCACTGTCCTATCT 57.602 50.000 0.00 0.00 0.00 1.98
1833 8914 1.173444 AGCTTCGTCGTCACTGTCCT 61.173 55.000 0.00 0.00 0.00 3.85
1835 8916 1.060726 CGAGCTTCGTCGTCACTGTC 61.061 60.000 0.00 0.00 34.72 3.51
1836 8917 1.082038 CGAGCTTCGTCGTCACTGT 60.082 57.895 0.00 0.00 34.72 3.55
1837 8918 3.742353 CGAGCTTCGTCGTCACTG 58.258 61.111 0.00 0.00 34.72 3.66
1846 8927 2.175530 AGATGTTACGACGAGCTTCG 57.824 50.000 0.00 6.27 46.93 3.79
1847 8928 3.790288 GGTTAGATGTTACGACGAGCTTC 59.210 47.826 0.00 0.00 0.00 3.86
1848 8929 3.192001 TGGTTAGATGTTACGACGAGCTT 59.808 43.478 0.00 0.00 0.00 3.74
1849 8930 2.751259 TGGTTAGATGTTACGACGAGCT 59.249 45.455 0.00 0.00 0.00 4.09
1850 8931 3.141002 TGGTTAGATGTTACGACGAGC 57.859 47.619 0.00 0.00 0.00 5.03
1851 8932 5.337554 TCAATGGTTAGATGTTACGACGAG 58.662 41.667 0.00 0.00 0.00 4.18
1854 8935 7.970384 TGAAATCAATGGTTAGATGTTACGAC 58.030 34.615 0.00 0.00 0.00 4.34
1891 8972 9.340695 CATTGAAATGCGTCTCTAATGTTTTTA 57.659 29.630 0.00 0.00 0.00 1.52
1892 8973 8.081633 TCATTGAAATGCGTCTCTAATGTTTTT 58.918 29.630 0.00 0.00 36.36 1.94
1896 8977 5.220739 GCTCATTGAAATGCGTCTCTAATGT 60.221 40.000 0.00 0.00 36.36 2.71
1899 8980 3.623060 GGCTCATTGAAATGCGTCTCTAA 59.377 43.478 0.00 0.00 36.36 2.10
1910 8991 1.974265 TGGTCGTTGGCTCATTGAAA 58.026 45.000 0.00 0.00 0.00 2.69
1914 8995 3.016736 CCTTATTGGTCGTTGGCTCATT 58.983 45.455 0.00 0.00 0.00 2.57
1918 8999 1.349688 TGTCCTTATTGGTCGTTGGCT 59.650 47.619 0.00 0.00 37.07 4.75
1928 9009 6.780457 ATTCTCCCAAACATGTCCTTATTG 57.220 37.500 0.00 0.00 0.00 1.90
1929 9010 7.454380 TGAAATTCTCCCAAACATGTCCTTATT 59.546 33.333 0.00 0.00 0.00 1.40
1930 9011 6.953520 TGAAATTCTCCCAAACATGTCCTTAT 59.046 34.615 0.00 0.00 0.00 1.73
1931 9012 6.310941 TGAAATTCTCCCAAACATGTCCTTA 58.689 36.000 0.00 0.00 0.00 2.69
1932 9013 5.147032 TGAAATTCTCCCAAACATGTCCTT 58.853 37.500 0.00 0.00 0.00 3.36
1936 9017 4.281688 CACCTGAAATTCTCCCAAACATGT 59.718 41.667 0.00 0.00 0.00 3.21
1957 9038 4.394712 CGGGAGGTGTGGGAGCAC 62.395 72.222 0.00 0.00 38.56 4.40
1958 9039 4.954118 ACGGGAGGTGTGGGAGCA 62.954 66.667 0.00 0.00 0.00 4.26
1959 9040 4.394712 CACGGGAGGTGTGGGAGC 62.395 72.222 0.00 0.00 41.89 4.70
1967 9048 0.691078 ACCATCATAGCACGGGAGGT 60.691 55.000 0.00 0.00 0.00 3.85
1968 9049 1.000955 GTACCATCATAGCACGGGAGG 59.999 57.143 0.00 0.00 0.00 4.30
1969 9050 1.335964 CGTACCATCATAGCACGGGAG 60.336 57.143 0.00 0.00 0.00 4.30
1970 9051 0.671796 CGTACCATCATAGCACGGGA 59.328 55.000 0.00 0.00 0.00 5.14
1971 9052 0.319555 CCGTACCATCATAGCACGGG 60.320 60.000 3.60 0.00 46.43 5.28
1972 9053 3.195041 CCGTACCATCATAGCACGG 57.805 57.895 0.00 0.00 45.25 4.94
1973 9054 0.671796 TCCCGTACCATCATAGCACG 59.328 55.000 0.00 0.00 0.00 5.34
1974 9055 1.605712 GCTCCCGTACCATCATAGCAC 60.606 57.143 0.00 0.00 0.00 4.40
1975 9056 0.679505 GCTCCCGTACCATCATAGCA 59.320 55.000 0.00 0.00 0.00 3.49
1985 9066 2.877335 CAAACTCACTAGCTCCCGTAC 58.123 52.381 0.00 0.00 0.00 3.67
1989 9070 1.270839 TGTGCAAACTCACTAGCTCCC 60.271 52.381 0.00 0.00 37.81 4.30
2005 9086 1.926510 GGTGTTTCTGCAAGTTTGTGC 59.073 47.619 0.00 0.00 45.15 4.57
2006 9087 2.166254 AGGGTGTTTCTGCAAGTTTGTG 59.834 45.455 0.00 0.00 33.76 3.33
2007 9088 2.427095 GAGGGTGTTTCTGCAAGTTTGT 59.573 45.455 0.00 0.00 33.76 2.83
2008 9089 2.426738 TGAGGGTGTTTCTGCAAGTTTG 59.573 45.455 0.00 0.00 33.76 2.93
2010 9091 2.435372 TGAGGGTGTTTCTGCAAGTT 57.565 45.000 0.00 0.00 33.76 2.66
2011 9092 2.301346 CTTGAGGGTGTTTCTGCAAGT 58.699 47.619 0.00 0.00 33.76 3.16
2013 9094 1.214175 TCCTTGAGGGTGTTTCTGCAA 59.786 47.619 0.00 0.00 36.25 4.08
2014 9095 0.843309 TCCTTGAGGGTGTTTCTGCA 59.157 50.000 0.00 0.00 36.25 4.41
2015 9096 1.202818 ACTCCTTGAGGGTGTTTCTGC 60.203 52.381 0.00 0.00 38.51 4.26
2016 9097 2.551071 GGACTCCTTGAGGGTGTTTCTG 60.551 54.545 0.00 0.00 41.32 3.02
2029 9141 4.415596 TGCACAAAATTATGGGACTCCTT 58.584 39.130 0.00 0.00 0.00 3.36
2046 9158 2.460669 TGAAGCCTCTAGATCTGCACA 58.539 47.619 5.18 2.44 0.00 4.57
2055 9167 4.755411 TCGGTTAATGTTGAAGCCTCTAG 58.245 43.478 0.00 0.00 0.00 2.43
2056 9168 4.811969 TCGGTTAATGTTGAAGCCTCTA 57.188 40.909 0.00 0.00 0.00 2.43
2070 9182 3.819337 CGGATAGGAGACTGATCGGTTAA 59.181 47.826 8.99 0.00 43.88 2.01
2077 9189 1.898902 CCGTCGGATAGGAGACTGAT 58.101 55.000 4.91 0.00 43.88 2.90
2083 9195 2.520982 TGGGCCGTCGGATAGGAG 60.521 66.667 17.49 0.00 0.00 3.69
2109 9221 1.842052 TCAGGTGCTACGGTGATACA 58.158 50.000 0.00 0.00 0.00 2.29
2138 10109 2.490991 GTTCCTCAACTAAACACGCCT 58.509 47.619 0.00 0.00 0.00 5.52
2142 10113 9.758651 ATTTTATTTGGTTCCTCAACTAAACAC 57.241 29.630 0.00 0.00 43.42 3.32
2198 10169 9.571816 AACAAAATATGAAAATGGAACCAACAT 57.428 25.926 0.00 4.93 0.00 2.71
2200 10171 8.288913 CCAACAAAATATGAAAATGGAACCAAC 58.711 33.333 0.00 0.00 0.00 3.77
2237 10208 5.907866 AAACGGAACCGATTTAATCCATT 57.092 34.783 20.14 0.00 42.83 3.16
2238 10209 6.514376 GCATAAACGGAACCGATTTAATCCAT 60.514 38.462 20.14 1.25 42.83 3.41
2244 10215 4.255301 AGTGCATAAACGGAACCGATTTA 58.745 39.130 20.14 17.82 42.83 1.40
2251 10222 3.003897 TCAACCAAGTGCATAAACGGAAC 59.996 43.478 0.00 0.00 0.00 3.62
2264 10235 3.588842 TCATCCCATCTCTTCAACCAAGT 59.411 43.478 0.00 0.00 33.27 3.16
2293 10265 2.611225 AAGAGATGAGCCGGATCAAC 57.389 50.000 28.45 24.50 31.76 3.18
2317 10289 4.430441 GGGGGTAATCTCACCATCTCTAT 58.570 47.826 0.00 0.00 40.65 1.98
2362 10334 8.696374 GCAGGGAATTGTAGCTATATCTGTATA 58.304 37.037 0.00 0.00 0.00 1.47
2363 10335 7.180946 TGCAGGGAATTGTAGCTATATCTGTAT 59.819 37.037 0.00 0.00 0.00 2.29
2364 10336 6.496911 TGCAGGGAATTGTAGCTATATCTGTA 59.503 38.462 0.00 0.00 0.00 2.74
2365 10337 5.307976 TGCAGGGAATTGTAGCTATATCTGT 59.692 40.000 0.00 0.00 0.00 3.41
2366 10338 5.798132 TGCAGGGAATTGTAGCTATATCTG 58.202 41.667 0.00 0.43 0.00 2.90
2367 10339 6.633325 ATGCAGGGAATTGTAGCTATATCT 57.367 37.500 0.00 0.00 0.00 1.98
2368 10340 8.792830 TTTATGCAGGGAATTGTAGCTATATC 57.207 34.615 0.00 0.00 0.00 1.63
2462 10434 4.456911 CAGATCCAGTAGTTGTGTTTGCAT 59.543 41.667 0.00 0.00 0.00 3.96
2501 10477 6.663093 TGTGACAAACTTTCCATAAGGCATAT 59.337 34.615 0.00 0.00 33.74 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.