Multiple sequence alignment - TraesCS5D01G395400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G395400 chr5D 100.000 3337 0 0 1 3337 463086279 463089615 0.000000e+00 6163.0
1 TraesCS5D01G395400 chr5D 90.441 408 27 7 1 399 127274784 127274380 8.200000e-146 527.0
2 TraesCS5D01G395400 chr5A 93.697 1650 75 15 993 2638 582980786 582982410 0.000000e+00 2444.0
3 TraesCS5D01G395400 chr5A 86.753 619 46 14 2721 3335 582982650 582983236 0.000000e+00 656.0
4 TraesCS5D01G395400 chr5A 80.851 517 48 19 418 917 582980272 582980754 3.170000e-95 359.0
5 TraesCS5D01G395400 chr5B 92.600 1608 77 24 991 2591 569825389 569826961 0.000000e+00 2272.0
6 TraesCS5D01G395400 chr5B 89.170 554 29 13 2810 3337 569829251 569829799 0.000000e+00 662.0
7 TraesCS5D01G395400 chr5B 81.203 266 42 8 2565 2822 676337889 676338154 1.210000e-49 207.0
8 TraesCS5D01G395400 chr5B 100.000 29 0 0 1008 1036 569825323 569825295 2.000000e-03 54.7
9 TraesCS5D01G395400 chr2A 83.510 1413 174 37 949 2342 591277808 591279180 0.000000e+00 1264.0
10 TraesCS5D01G395400 chr2A 78.765 1182 206 29 1188 2343 591264527 591265689 0.000000e+00 750.0
11 TraesCS5D01G395400 chr2A 79.151 542 86 21 1785 2302 676984961 676985499 1.910000e-92 350.0
12 TraesCS5D01G395400 chr2B 86.085 1193 134 21 1174 2341 526776229 526777414 0.000000e+00 1254.0
13 TraesCS5D01G395400 chr2B 78.451 1188 198 37 1188 2337 526763366 526764533 0.000000e+00 723.0
14 TraesCS5D01G395400 chr2B 90.255 431 30 8 1 422 133824749 133824322 1.350000e-153 553.0
15 TraesCS5D01G395400 chr2B 79.482 541 86 18 1785 2302 632403870 632404408 8.800000e-96 361.0
16 TraesCS5D01G395400 chr2B 82.353 272 36 8 2561 2820 550829948 550830219 3.350000e-55 226.0
17 TraesCS5D01G395400 chr2B 81.919 271 33 13 2564 2822 12283773 12283507 7.250000e-52 215.0
18 TraesCS5D01G395400 chr2B 80.669 269 40 11 2565 2821 773565304 773565036 7.300000e-47 198.0
19 TraesCS5D01G395400 chr2B 85.083 181 26 1 921 1100 526775917 526776097 2.040000e-42 183.0
20 TraesCS5D01G395400 chr2D 85.824 1171 141 19 1189 2341 446942045 446943208 0.000000e+00 1219.0
21 TraesCS5D01G395400 chr2D 78.112 1197 202 39 1181 2337 446858934 446857758 0.000000e+00 704.0
22 TraesCS5D01G395400 chr2D 91.529 425 33 3 1 423 534582563 534582140 1.730000e-162 582.0
23 TraesCS5D01G395400 chr2D 79.344 518 88 14 1786 2298 544660794 544661297 2.460000e-91 346.0
24 TraesCS5D01G395400 chr2D 78.967 542 87 21 1785 2302 532426371 532426909 8.860000e-91 344.0
25 TraesCS5D01G395400 chr2D 81.776 428 58 15 1192 1615 447149093 447149504 1.150000e-89 340.0
26 TraesCS5D01G395400 chr2D 80.970 268 42 7 2564 2822 567787760 567787493 1.570000e-48 204.0
27 TraesCS5D01G395400 chr2D 81.275 251 30 9 839 1079 446941184 446941427 1.580000e-43 187.0
28 TraesCS5D01G395400 chr7D 89.510 429 32 6 1 420 261355504 261355080 6.340000e-147 531.0
29 TraesCS5D01G395400 chr7D 81.439 264 38 7 2565 2822 602823976 602823718 4.360000e-49 206.0
30 TraesCS5D01G395400 chr6D 89.151 424 40 6 1 420 34738369 34737948 1.060000e-144 523.0
31 TraesCS5D01G395400 chr7A 89.095 431 32 10 1 420 721428354 721427928 3.820000e-144 521.0
32 TraesCS5D01G395400 chr7A 88.889 423 41 6 1 420 704681433 704681852 1.780000e-142 516.0
33 TraesCS5D01G395400 chr7A 82.156 269 36 10 2565 2822 76831808 76832075 1.560000e-53 220.0
34 TraesCS5D01G395400 chr7A 89.796 49 4 1 457 504 37831757 37831709 1.000000e-05 62.1
35 TraesCS5D01G395400 chr1A 89.120 432 30 9 1 423 216418401 216418824 3.820000e-144 521.0
36 TraesCS5D01G395400 chr3A 88.194 432 40 5 1 422 399695103 399694673 3.840000e-139 505.0
37 TraesCS5D01G395400 chr6A 80.827 266 41 8 2565 2822 203598769 203598506 2.030000e-47 200.0
38 TraesCS5D01G395400 chr6A 92.188 64 5 0 1016 1079 154740176 154740113 1.270000e-14 91.6
39 TraesCS5D01G395400 chr6B 80.827 266 37 9 2565 2822 687045856 687045597 2.630000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G395400 chr5D 463086279 463089615 3336 False 6163.0 6163 100.000000 1 3337 1 chr5D.!!$F1 3336
1 TraesCS5D01G395400 chr5A 582980272 582983236 2964 False 1153.0 2444 87.100333 418 3335 3 chr5A.!!$F1 2917
2 TraesCS5D01G395400 chr5B 569825389 569829799 4410 False 1467.0 2272 90.885000 991 3337 2 chr5B.!!$F2 2346
3 TraesCS5D01G395400 chr2A 591277808 591279180 1372 False 1264.0 1264 83.510000 949 2342 1 chr2A.!!$F2 1393
4 TraesCS5D01G395400 chr2A 591264527 591265689 1162 False 750.0 750 78.765000 1188 2343 1 chr2A.!!$F1 1155
5 TraesCS5D01G395400 chr2A 676984961 676985499 538 False 350.0 350 79.151000 1785 2302 1 chr2A.!!$F3 517
6 TraesCS5D01G395400 chr2B 526763366 526764533 1167 False 723.0 723 78.451000 1188 2337 1 chr2B.!!$F1 1149
7 TraesCS5D01G395400 chr2B 526775917 526777414 1497 False 718.5 1254 85.584000 921 2341 2 chr2B.!!$F4 1420
8 TraesCS5D01G395400 chr2B 632403870 632404408 538 False 361.0 361 79.482000 1785 2302 1 chr2B.!!$F3 517
9 TraesCS5D01G395400 chr2D 446857758 446858934 1176 True 704.0 704 78.112000 1181 2337 1 chr2D.!!$R1 1156
10 TraesCS5D01G395400 chr2D 446941184 446943208 2024 False 703.0 1219 83.549500 839 2341 2 chr2D.!!$F4 1502
11 TraesCS5D01G395400 chr2D 544660794 544661297 503 False 346.0 346 79.344000 1786 2298 1 chr2D.!!$F3 512
12 TraesCS5D01G395400 chr2D 532426371 532426909 538 False 344.0 344 78.967000 1785 2302 1 chr2D.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.035630 AGCAAGATCTGGTGGAGCAC 60.036 55.0 0.00 0.0 33.42 4.40 F
284 285 0.040425 CGAAAGTGGGCCGAAAACTG 60.040 55.0 0.00 0.0 0.00 3.16 F
393 394 0.041312 CGGCGATTTTTATGCCTCCG 60.041 55.0 0.00 0.0 46.67 4.63 F
719 732 0.178932 ACTACCCACAGTGAGAGGCA 60.179 55.0 0.62 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1161 1386 0.038251 GGCATCACGTGTCAGTCAGA 60.038 55.000 16.51 0.00 30.99 3.27 R
1162 1387 0.319813 TGGCATCACGTGTCAGTCAG 60.320 55.000 16.51 0.31 37.56 3.51 R
1576 2162 1.986210 GCCCTGCTTGGCCTTGAAT 60.986 57.895 3.32 0.00 46.11 2.57 R
2678 3341 0.109226 GAACGTCTCCTCCCTGAACG 60.109 60.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.416901 TGCATCAACAACTGCAGCA 58.583 47.368 15.27 0.00 43.11 4.41
20 21 0.745468 TGCATCAACAACTGCAGCAA 59.255 45.000 15.27 0.00 43.11 3.91
21 22 1.269361 TGCATCAACAACTGCAGCAAG 60.269 47.619 15.27 6.35 43.11 4.01
22 23 1.001048 GCATCAACAACTGCAGCAAGA 60.001 47.619 15.27 5.50 38.28 3.02
23 24 2.352421 GCATCAACAACTGCAGCAAGAT 60.352 45.455 15.27 7.72 38.28 2.40
24 25 3.499048 CATCAACAACTGCAGCAAGATC 58.501 45.455 15.27 0.00 0.00 2.75
25 26 2.854963 TCAACAACTGCAGCAAGATCT 58.145 42.857 15.27 0.00 0.00 2.75
26 27 2.551032 TCAACAACTGCAGCAAGATCTG 59.449 45.455 15.27 2.56 37.15 2.90
27 28 1.531423 ACAACTGCAGCAAGATCTGG 58.469 50.000 15.27 0.00 34.74 3.86
28 29 1.202855 ACAACTGCAGCAAGATCTGGT 60.203 47.619 15.27 0.00 34.74 4.00
34 35 2.380365 AGCAAGATCTGGTGGAGCA 58.620 52.632 0.00 0.00 33.42 4.26
35 36 0.035630 AGCAAGATCTGGTGGAGCAC 60.036 55.000 0.00 0.00 33.42 4.40
53 54 1.453669 CCTATGGAGGCTCAAGGGC 59.546 63.158 17.69 0.00 35.54 5.19
54 55 1.070445 CTATGGAGGCTCAAGGGCG 59.930 63.158 17.69 0.00 45.89 6.13
55 56 1.382557 TATGGAGGCTCAAGGGCGA 60.383 57.895 17.69 0.00 45.89 5.54
56 57 1.686325 TATGGAGGCTCAAGGGCGAC 61.686 60.000 17.69 0.00 45.89 5.19
57 58 4.821589 GGAGGCTCAAGGGCGACG 62.822 72.222 17.69 0.00 45.89 5.12
68 69 4.908877 GGCGACGCCTAGCTCGAC 62.909 72.222 31.30 0.00 46.69 4.20
70 71 3.862402 CGACGCCTAGCTCGACGT 61.862 66.667 0.00 0.00 42.27 4.34
71 72 2.277373 GACGCCTAGCTCGACGTG 60.277 66.667 3.93 0.00 39.16 4.49
72 73 3.036783 GACGCCTAGCTCGACGTGT 62.037 63.158 3.93 0.00 39.16 4.49
73 74 2.577112 CGCCTAGCTCGACGTGTG 60.577 66.667 0.00 0.00 0.00 3.82
74 75 2.875485 GCCTAGCTCGACGTGTGA 59.125 61.111 0.00 0.00 0.00 3.58
75 76 1.433879 GCCTAGCTCGACGTGTGAT 59.566 57.895 0.00 0.00 0.00 3.06
76 77 0.867753 GCCTAGCTCGACGTGTGATG 60.868 60.000 0.00 0.00 0.00 3.07
77 78 0.733150 CCTAGCTCGACGTGTGATGA 59.267 55.000 0.00 0.00 0.00 2.92
78 79 1.268285 CCTAGCTCGACGTGTGATGAG 60.268 57.143 0.00 0.00 0.00 2.90
79 80 1.398739 CTAGCTCGACGTGTGATGAGT 59.601 52.381 0.00 0.00 0.00 3.41
80 81 0.598562 AGCTCGACGTGTGATGAGTT 59.401 50.000 0.00 0.00 0.00 3.01
81 82 1.000163 AGCTCGACGTGTGATGAGTTT 60.000 47.619 0.00 0.00 0.00 2.66
82 83 1.792949 GCTCGACGTGTGATGAGTTTT 59.207 47.619 0.00 0.00 0.00 2.43
83 84 2.221055 GCTCGACGTGTGATGAGTTTTT 59.779 45.455 0.00 0.00 0.00 1.94
84 85 3.427528 GCTCGACGTGTGATGAGTTTTTA 59.572 43.478 0.00 0.00 0.00 1.52
85 86 4.091509 GCTCGACGTGTGATGAGTTTTTAT 59.908 41.667 0.00 0.00 0.00 1.40
86 87 5.389516 GCTCGACGTGTGATGAGTTTTTATT 60.390 40.000 0.00 0.00 0.00 1.40
87 88 6.533819 TCGACGTGTGATGAGTTTTTATTT 57.466 33.333 0.00 0.00 0.00 1.40
88 89 6.359545 TCGACGTGTGATGAGTTTTTATTTG 58.640 36.000 0.00 0.00 0.00 2.32
89 90 6.018588 TCGACGTGTGATGAGTTTTTATTTGT 60.019 34.615 0.00 0.00 0.00 2.83
90 91 6.631238 CGACGTGTGATGAGTTTTTATTTGTT 59.369 34.615 0.00 0.00 0.00 2.83
91 92 7.356396 CGACGTGTGATGAGTTTTTATTTGTTG 60.356 37.037 0.00 0.00 0.00 3.33
92 93 7.476667 ACGTGTGATGAGTTTTTATTTGTTGA 58.523 30.769 0.00 0.00 0.00 3.18
93 94 7.971168 ACGTGTGATGAGTTTTTATTTGTTGAA 59.029 29.630 0.00 0.00 0.00 2.69
94 95 8.259194 CGTGTGATGAGTTTTTATTTGTTGAAC 58.741 33.333 0.00 0.00 0.00 3.18
95 96 9.301153 GTGTGATGAGTTTTTATTTGTTGAACT 57.699 29.630 0.00 0.00 33.58 3.01
128 129 8.932945 TTGTATTGAACTATTTTGTTGTTGCA 57.067 26.923 0.00 0.00 0.00 4.08
129 130 8.346476 TGTATTGAACTATTTTGTTGTTGCAC 57.654 30.769 0.00 0.00 0.00 4.57
130 131 8.194104 TGTATTGAACTATTTTGTTGTTGCACT 58.806 29.630 0.00 0.00 0.00 4.40
131 132 9.672086 GTATTGAACTATTTTGTTGTTGCACTA 57.328 29.630 0.00 0.00 0.00 2.74
133 134 9.762933 ATTGAACTATTTTGTTGTTGCACTATT 57.237 25.926 0.00 0.00 0.00 1.73
134 135 9.593134 TTGAACTATTTTGTTGTTGCACTATTT 57.407 25.926 0.00 0.00 0.00 1.40
135 136 9.593134 TGAACTATTTTGTTGTTGCACTATTTT 57.407 25.926 0.00 0.00 0.00 1.82
136 137 9.848172 GAACTATTTTGTTGTTGCACTATTTTG 57.152 29.630 0.00 0.00 0.00 2.44
137 138 8.940768 ACTATTTTGTTGTTGCACTATTTTGT 57.059 26.923 0.00 0.00 0.00 2.83
138 139 9.377312 ACTATTTTGTTGTTGCACTATTTTGTT 57.623 25.926 0.00 0.00 0.00 2.83
139 140 9.635632 CTATTTTGTTGTTGCACTATTTTGTTG 57.364 29.630 0.00 0.00 0.00 3.33
140 141 7.658179 TTTTGTTGTTGCACTATTTTGTTGA 57.342 28.000 0.00 0.00 0.00 3.18
141 142 7.658179 TTTGTTGTTGCACTATTTTGTTGAA 57.342 28.000 0.00 0.00 0.00 2.69
142 143 6.639671 TGTTGTTGCACTATTTTGTTGAAC 57.360 33.333 0.00 0.00 0.00 3.18
143 144 5.578727 TGTTGTTGCACTATTTTGTTGAACC 59.421 36.000 0.00 0.00 0.00 3.62
144 145 5.330455 TGTTGCACTATTTTGTTGAACCA 57.670 34.783 0.00 0.00 0.00 3.67
145 146 5.911752 TGTTGCACTATTTTGTTGAACCAT 58.088 33.333 0.00 0.00 0.00 3.55
146 147 6.344500 TGTTGCACTATTTTGTTGAACCATT 58.656 32.000 0.00 0.00 0.00 3.16
147 148 6.820656 TGTTGCACTATTTTGTTGAACCATTT 59.179 30.769 0.00 0.00 0.00 2.32
148 149 6.841443 TGCACTATTTTGTTGAACCATTTG 57.159 33.333 0.00 0.00 0.00 2.32
149 150 6.577103 TGCACTATTTTGTTGAACCATTTGA 58.423 32.000 0.00 0.00 0.00 2.69
150 151 7.215789 TGCACTATTTTGTTGAACCATTTGAT 58.784 30.769 0.00 0.00 0.00 2.57
151 152 7.714377 TGCACTATTTTGTTGAACCATTTGATT 59.286 29.630 0.00 0.00 0.00 2.57
152 153 8.558700 GCACTATTTTGTTGAACCATTTGATTT 58.441 29.630 0.00 0.00 0.00 2.17
157 158 8.558973 TTTTGTTGAACCATTTGATTTTCTGT 57.441 26.923 0.00 0.00 0.00 3.41
158 159 7.536895 TTGTTGAACCATTTGATTTTCTGTG 57.463 32.000 0.00 0.00 0.00 3.66
159 160 6.871844 TGTTGAACCATTTGATTTTCTGTGA 58.128 32.000 0.00 0.00 0.00 3.58
160 161 7.499292 TGTTGAACCATTTGATTTTCTGTGAT 58.501 30.769 0.00 0.00 0.00 3.06
161 162 7.438757 TGTTGAACCATTTGATTTTCTGTGATG 59.561 33.333 0.00 0.00 0.00 3.07
162 163 7.287512 TGAACCATTTGATTTTCTGTGATGA 57.712 32.000 0.00 0.00 0.00 2.92
163 164 7.724287 TGAACCATTTGATTTTCTGTGATGAA 58.276 30.769 0.00 0.00 0.00 2.57
164 165 7.652909 TGAACCATTTGATTTTCTGTGATGAAC 59.347 33.333 0.00 0.00 0.00 3.18
165 166 7.294017 ACCATTTGATTTTCTGTGATGAACT 57.706 32.000 0.00 0.00 0.00 3.01
166 167 8.408043 ACCATTTGATTTTCTGTGATGAACTA 57.592 30.769 0.00 0.00 0.00 2.24
167 168 9.028284 ACCATTTGATTTTCTGTGATGAACTAT 57.972 29.630 0.00 0.00 0.00 2.12
168 169 9.297586 CCATTTGATTTTCTGTGATGAACTATG 57.702 33.333 0.00 0.00 0.00 2.23
169 170 9.850628 CATTTGATTTTCTGTGATGAACTATGT 57.149 29.630 0.00 0.00 0.00 2.29
170 171 9.850628 ATTTGATTTTCTGTGATGAACTATGTG 57.149 29.630 0.00 0.00 0.00 3.21
171 172 8.620116 TTGATTTTCTGTGATGAACTATGTGA 57.380 30.769 0.00 0.00 0.00 3.58
172 173 8.797350 TGATTTTCTGTGATGAACTATGTGAT 57.203 30.769 0.00 0.00 0.00 3.06
173 174 9.889128 TGATTTTCTGTGATGAACTATGTGATA 57.111 29.630 0.00 0.00 0.00 2.15
209 210 2.139917 TGAGAATTCAACACCGAACCG 58.860 47.619 8.44 0.00 0.00 4.44
210 211 0.872388 AGAATTCAACACCGAACCGC 59.128 50.000 8.44 0.00 0.00 5.68
211 212 0.452122 GAATTCAACACCGAACCGCG 60.452 55.000 0.00 0.00 40.47 6.46
212 213 0.881159 AATTCAACACCGAACCGCGA 60.881 50.000 8.23 0.00 44.57 5.87
213 214 1.562575 ATTCAACACCGAACCGCGAC 61.563 55.000 8.23 0.00 44.57 5.19
214 215 4.054455 CAACACCGAACCGCGACG 62.054 66.667 8.23 10.61 44.57 5.12
215 216 4.268939 AACACCGAACCGCGACGA 62.269 61.111 8.23 0.00 44.57 4.20
216 217 3.771568 AACACCGAACCGCGACGAA 62.772 57.895 8.23 0.00 44.57 3.85
217 218 3.759828 CACCGAACCGCGACGAAC 61.760 66.667 8.23 0.00 44.57 3.95
220 221 3.759828 CGAACCGCGACGAACCAC 61.760 66.667 8.23 0.00 44.57 4.16
228 229 4.481870 GACGAACCACGCCGAATA 57.518 55.556 0.00 0.00 46.94 1.75
229 230 2.967740 GACGAACCACGCCGAATAT 58.032 52.632 0.00 0.00 46.94 1.28
230 231 0.575390 GACGAACCACGCCGAATATG 59.425 55.000 0.00 0.00 46.94 1.78
231 232 0.808453 ACGAACCACGCCGAATATGG 60.808 55.000 0.00 0.00 46.94 2.74
232 233 1.495584 CGAACCACGCCGAATATGGG 61.496 60.000 0.00 0.00 37.86 4.00
238 239 4.397348 GCCGAATATGGGCCGATT 57.603 55.556 5.24 0.02 44.97 3.34
239 240 2.171635 GCCGAATATGGGCCGATTC 58.828 57.895 17.03 17.03 44.97 2.52
240 241 0.321653 GCCGAATATGGGCCGATTCT 60.322 55.000 21.82 0.00 44.97 2.40
241 242 1.726853 CCGAATATGGGCCGATTCTC 58.273 55.000 21.82 2.16 31.15 2.87
242 243 1.350193 CGAATATGGGCCGATTCTCG 58.650 55.000 21.82 10.85 40.07 4.04
243 244 1.079503 GAATATGGGCCGATTCTCGC 58.920 55.000 18.85 0.00 38.82 5.03
244 245 0.321653 AATATGGGCCGATTCTCGCC 60.322 55.000 5.24 3.62 38.82 5.54
248 249 2.741092 GGCCGATTCTCGCCCATA 59.259 61.111 0.00 0.00 37.34 2.74
249 250 1.296715 GGCCGATTCTCGCCCATAT 59.703 57.895 0.00 0.00 37.34 1.78
250 251 1.021390 GGCCGATTCTCGCCCATATG 61.021 60.000 0.00 0.00 37.34 1.78
251 252 1.021390 GCCGATTCTCGCCCATATGG 61.021 60.000 15.41 15.41 38.82 2.74
264 265 3.154827 CCATATGGGGCCTTTATTCGT 57.845 47.619 14.52 0.00 0.00 3.85
265 266 3.081804 CCATATGGGGCCTTTATTCGTC 58.918 50.000 14.52 0.00 0.00 4.20
266 267 2.536761 TATGGGGCCTTTATTCGTCG 57.463 50.000 0.84 0.00 0.00 5.12
267 268 0.834612 ATGGGGCCTTTATTCGTCGA 59.165 50.000 0.84 0.00 0.00 4.20
268 269 0.614294 TGGGGCCTTTATTCGTCGAA 59.386 50.000 10.61 10.61 0.00 3.71
269 270 1.003349 TGGGGCCTTTATTCGTCGAAA 59.997 47.619 12.40 0.00 0.00 3.46
270 271 1.669265 GGGGCCTTTATTCGTCGAAAG 59.331 52.381 12.40 5.00 0.00 2.62
271 272 2.353323 GGGCCTTTATTCGTCGAAAGT 58.647 47.619 12.40 0.00 0.00 2.66
272 273 2.095372 GGGCCTTTATTCGTCGAAAGTG 59.905 50.000 12.40 3.10 0.00 3.16
273 274 2.095372 GGCCTTTATTCGTCGAAAGTGG 59.905 50.000 12.40 12.36 0.00 4.00
274 275 2.095372 GCCTTTATTCGTCGAAAGTGGG 59.905 50.000 12.40 12.64 0.00 4.61
275 276 2.095372 CCTTTATTCGTCGAAAGTGGGC 59.905 50.000 12.40 0.00 0.00 5.36
276 277 1.729284 TTATTCGTCGAAAGTGGGCC 58.271 50.000 12.40 0.00 0.00 5.80
277 278 0.458889 TATTCGTCGAAAGTGGGCCG 60.459 55.000 12.40 0.00 0.00 6.13
278 279 2.162338 ATTCGTCGAAAGTGGGCCGA 62.162 55.000 12.40 0.00 0.00 5.54
279 280 2.356553 CGTCGAAAGTGGGCCGAA 60.357 61.111 0.00 0.00 33.91 4.30
280 281 1.957186 CGTCGAAAGTGGGCCGAAA 60.957 57.895 0.00 0.00 33.91 3.46
281 282 1.500512 CGTCGAAAGTGGGCCGAAAA 61.501 55.000 0.00 0.00 33.91 2.29
282 283 0.040692 GTCGAAAGTGGGCCGAAAAC 60.041 55.000 0.00 0.00 33.91 2.43
283 284 0.179040 TCGAAAGTGGGCCGAAAACT 60.179 50.000 0.00 0.00 0.00 2.66
284 285 0.040425 CGAAAGTGGGCCGAAAACTG 60.040 55.000 0.00 0.00 0.00 3.16
285 286 0.313987 GAAAGTGGGCCGAAAACTGG 59.686 55.000 0.00 0.00 0.00 4.00
286 287 1.112916 AAAGTGGGCCGAAAACTGGG 61.113 55.000 0.00 0.00 0.00 4.45
291 292 3.376546 GCCGAAAACTGGGCCAAT 58.623 55.556 8.04 0.00 43.64 3.16
292 293 1.215382 GCCGAAAACTGGGCCAATC 59.785 57.895 8.04 2.89 43.64 2.67
293 294 1.250840 GCCGAAAACTGGGCCAATCT 61.251 55.000 8.04 0.00 43.64 2.40
294 295 0.811281 CCGAAAACTGGGCCAATCTC 59.189 55.000 8.04 0.91 0.00 2.75
295 296 0.447801 CGAAAACTGGGCCAATCTCG 59.552 55.000 8.04 10.01 0.00 4.04
296 297 1.821216 GAAAACTGGGCCAATCTCGA 58.179 50.000 8.04 0.00 0.00 4.04
297 298 1.468914 GAAAACTGGGCCAATCTCGAC 59.531 52.381 8.04 0.00 0.00 4.20
298 299 0.673644 AAACTGGGCCAATCTCGACG 60.674 55.000 8.04 0.00 0.00 5.12
299 300 2.892425 CTGGGCCAATCTCGACGC 60.892 66.667 8.04 0.00 0.00 5.19
300 301 4.467084 TGGGCCAATCTCGACGCC 62.467 66.667 2.13 0.00 40.85 5.68
301 302 4.162690 GGGCCAATCTCGACGCCT 62.163 66.667 4.39 0.00 41.35 5.52
302 303 2.892425 GGCCAATCTCGACGCCTG 60.892 66.667 0.00 0.00 38.41 4.85
303 304 2.892425 GCCAATCTCGACGCCTGG 60.892 66.667 0.00 0.00 0.00 4.45
304 305 2.202932 CCAATCTCGACGCCTGGG 60.203 66.667 0.00 0.00 0.00 4.45
305 306 2.202932 CAATCTCGACGCCTGGGG 60.203 66.667 9.49 9.49 0.00 4.96
306 307 2.363795 AATCTCGACGCCTGGGGA 60.364 61.111 18.53 0.00 0.00 4.81
307 308 2.722201 AATCTCGACGCCTGGGGAC 61.722 63.158 18.53 10.52 0.00 4.46
334 335 4.451150 GCGACGGCTGGATGACCA 62.451 66.667 0.00 0.00 44.76 4.02
335 336 2.264480 CGACGGCTGGATGACCAA 59.736 61.111 0.00 0.00 46.32 3.67
336 337 2.100631 CGACGGCTGGATGACCAAC 61.101 63.158 0.00 0.00 46.32 3.77
337 338 1.745489 GACGGCTGGATGACCAACC 60.745 63.158 0.00 0.00 46.32 3.77
339 340 3.134127 GGCTGGATGACCAACCGC 61.134 66.667 0.00 0.00 46.32 5.68
340 341 3.134127 GCTGGATGACCAACCGCC 61.134 66.667 0.00 0.00 46.32 6.13
341 342 2.438434 CTGGATGACCAACCGCCC 60.438 66.667 0.00 0.00 46.32 6.13
342 343 3.995506 CTGGATGACCAACCGCCCC 62.996 68.421 0.00 0.00 46.32 5.80
343 344 4.041762 GGATGACCAACCGCCCCA 62.042 66.667 0.00 0.00 35.97 4.96
344 345 2.438434 GATGACCAACCGCCCCAG 60.438 66.667 0.00 0.00 0.00 4.45
345 346 4.740822 ATGACCAACCGCCCCAGC 62.741 66.667 0.00 0.00 0.00 4.85
355 356 4.235762 GCCCCAGCGCCGATTCTA 62.236 66.667 2.29 0.00 0.00 2.10
356 357 2.280186 CCCCAGCGCCGATTCTAC 60.280 66.667 2.29 0.00 0.00 2.59
357 358 2.280186 CCCAGCGCCGATTCTACC 60.280 66.667 2.29 0.00 0.00 3.18
358 359 2.658593 CCAGCGCCGATTCTACCG 60.659 66.667 2.29 0.00 0.00 4.02
359 360 3.330853 CAGCGCCGATTCTACCGC 61.331 66.667 2.29 0.00 46.14 5.68
360 361 4.587189 AGCGCCGATTCTACCGCC 62.587 66.667 2.29 0.00 46.90 6.13
364 365 3.912907 CCGATTCTACCGCCGGCT 61.913 66.667 26.68 9.55 35.29 5.52
365 366 2.354773 CGATTCTACCGCCGGCTC 60.355 66.667 26.68 12.39 0.00 4.70
366 367 2.354773 GATTCTACCGCCGGCTCG 60.355 66.667 26.68 17.01 0.00 5.03
367 368 3.135056 GATTCTACCGCCGGCTCGT 62.135 63.158 26.68 22.04 0.00 4.18
368 369 3.135056 ATTCTACCGCCGGCTCGTC 62.135 63.158 26.68 0.00 0.00 4.20
383 384 4.296265 GTCCCAGACGGCGATTTT 57.704 55.556 16.62 0.00 0.00 1.82
384 385 2.551644 GTCCCAGACGGCGATTTTT 58.448 52.632 16.62 0.00 0.00 1.94
385 386 1.729284 GTCCCAGACGGCGATTTTTA 58.271 50.000 16.62 0.00 0.00 1.52
386 387 2.285977 GTCCCAGACGGCGATTTTTAT 58.714 47.619 16.62 0.00 0.00 1.40
387 388 2.031683 GTCCCAGACGGCGATTTTTATG 59.968 50.000 16.62 0.00 0.00 1.90
388 389 1.268539 CCCAGACGGCGATTTTTATGC 60.269 52.381 16.62 0.00 0.00 3.14
389 390 1.268539 CCAGACGGCGATTTTTATGCC 60.269 52.381 16.62 0.00 45.39 4.40
390 391 1.670811 CAGACGGCGATTTTTATGCCT 59.329 47.619 16.62 0.00 46.67 4.75
391 392 1.940613 AGACGGCGATTTTTATGCCTC 59.059 47.619 16.62 0.00 46.67 4.70
392 393 1.002792 GACGGCGATTTTTATGCCTCC 60.003 52.381 16.62 0.00 46.67 4.30
393 394 0.041312 CGGCGATTTTTATGCCTCCG 60.041 55.000 0.00 0.00 46.67 4.63
394 395 0.310854 GGCGATTTTTATGCCTCCGG 59.689 55.000 0.00 0.00 45.40 5.14
395 396 0.310854 GCGATTTTTATGCCTCCGGG 59.689 55.000 0.00 0.00 0.00 5.73
396 397 0.951558 CGATTTTTATGCCTCCGGGG 59.048 55.000 0.00 0.00 38.36 5.73
397 398 1.328279 GATTTTTATGCCTCCGGGGG 58.672 55.000 19.17 19.17 35.12 5.40
418 419 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
419 420 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
420 421 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
421 422 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
422 423 0.461961 ACGGCTGGAGATGCTCTTAC 59.538 55.000 0.00 0.00 0.00 2.34
423 424 0.596083 CGGCTGGAGATGCTCTTACG 60.596 60.000 0.00 0.00 0.00 3.18
424 425 0.249657 GGCTGGAGATGCTCTTACGG 60.250 60.000 0.00 0.00 0.00 4.02
496 497 4.063967 CCAGGTGCAGCGACGGTA 62.064 66.667 10.78 0.00 0.00 4.02
497 498 2.048597 CAGGTGCAGCGACGGTAA 60.049 61.111 10.78 0.00 0.00 2.85
498 499 1.666553 CAGGTGCAGCGACGGTAAA 60.667 57.895 10.78 0.00 0.00 2.01
499 500 1.019278 CAGGTGCAGCGACGGTAAAT 61.019 55.000 10.78 0.00 0.00 1.40
500 501 0.321298 AGGTGCAGCGACGGTAAATT 60.321 50.000 10.78 0.00 0.00 1.82
561 574 3.466836 AGCGTTGACAAAGAATGTGAGA 58.533 40.909 5.22 0.00 44.12 3.27
563 576 3.968724 GCGTTGACAAAGAATGTGAGAAC 59.031 43.478 5.22 0.00 44.12 3.01
594 607 4.858680 GTGCCTTCCCTAGCCGCC 62.859 72.222 0.00 0.00 0.00 6.13
610 623 2.388232 GCCGTGGTTCCTAGTTGCG 61.388 63.158 0.00 0.00 0.00 4.85
625 638 2.682494 GCGACCCTACCCAGACCA 60.682 66.667 0.00 0.00 0.00 4.02
626 639 2.064581 GCGACCCTACCCAGACCAT 61.065 63.158 0.00 0.00 0.00 3.55
637 650 2.043248 AGACCATACCGAGGCCGT 60.043 61.111 0.00 0.00 0.00 5.68
640 653 1.952102 GACCATACCGAGGCCGTCAA 61.952 60.000 0.00 0.00 0.00 3.18
642 655 1.227263 CATACCGAGGCCGTCAAGG 60.227 63.158 0.00 0.00 44.97 3.61
643 656 2.432300 ATACCGAGGCCGTCAAGGG 61.432 63.158 0.00 0.00 41.48 3.95
691 704 2.279517 GAGATGCCCGCCGTAGTG 60.280 66.667 0.00 0.00 0.00 2.74
704 717 2.810650 CCGTAGTGGCATTGAGACTAC 58.189 52.381 12.40 12.40 39.04 2.73
705 718 2.481449 CCGTAGTGGCATTGAGACTACC 60.481 54.545 14.95 0.00 39.18 3.18
706 719 2.481449 CGTAGTGGCATTGAGACTACCC 60.481 54.545 14.95 0.00 39.18 3.69
707 720 1.656587 AGTGGCATTGAGACTACCCA 58.343 50.000 0.00 0.00 0.00 4.51
708 721 1.279271 AGTGGCATTGAGACTACCCAC 59.721 52.381 0.00 0.00 42.23 4.61
709 722 1.003118 GTGGCATTGAGACTACCCACA 59.997 52.381 0.00 0.00 41.68 4.17
710 723 1.278985 TGGCATTGAGACTACCCACAG 59.721 52.381 0.00 0.00 0.00 3.66
711 724 1.279271 GGCATTGAGACTACCCACAGT 59.721 52.381 0.00 0.00 0.00 3.55
712 725 2.350522 GCATTGAGACTACCCACAGTG 58.649 52.381 0.00 0.00 0.00 3.66
713 726 2.028112 GCATTGAGACTACCCACAGTGA 60.028 50.000 0.62 0.00 0.00 3.41
714 727 3.854666 CATTGAGACTACCCACAGTGAG 58.145 50.000 0.62 0.00 0.00 3.51
715 728 2.971901 TGAGACTACCCACAGTGAGA 57.028 50.000 0.62 0.00 0.00 3.27
716 729 2.796557 TGAGACTACCCACAGTGAGAG 58.203 52.381 0.62 0.00 0.00 3.20
717 730 2.096248 GAGACTACCCACAGTGAGAGG 58.904 57.143 0.62 0.00 0.00 3.69
718 731 0.533032 GACTACCCACAGTGAGAGGC 59.467 60.000 0.62 0.00 0.00 4.70
719 732 0.178932 ACTACCCACAGTGAGAGGCA 60.179 55.000 0.62 0.00 0.00 4.75
729 742 0.820871 GTGAGAGGCACCTCGATCTT 59.179 55.000 10.99 0.00 46.90 2.40
734 747 3.918220 GCACCTCGATCTTGCGCG 61.918 66.667 0.00 0.00 0.00 6.86
736 749 2.507102 ACCTCGATCTTGCGCGTG 60.507 61.111 8.43 0.00 0.00 5.34
760 773 4.717313 GGTGTGCCTTCCCCGGTC 62.717 72.222 0.00 0.00 0.00 4.79
823 840 2.591715 CGGCCGACCATGGGAATC 60.592 66.667 24.07 3.49 34.57 2.52
824 841 2.595095 GGCCGACCATGGGAATCA 59.405 61.111 18.09 0.00 35.26 2.57
826 843 0.468029 GGCCGACCATGGGAATCAAT 60.468 55.000 18.09 0.00 35.26 2.57
896 918 1.003696 GCCTATAAGATGCCACCTCCC 59.996 57.143 0.00 0.00 0.00 4.30
900 928 0.399949 TAAGATGCCACCTCCCCGAT 60.400 55.000 0.00 0.00 0.00 4.18
917 945 2.259618 CGATGGTCAAGTAACTCCGTG 58.740 52.381 0.00 0.00 0.00 4.94
918 946 2.000447 GATGGTCAAGTAACTCCGTGC 59.000 52.381 0.00 0.00 0.00 5.34
919 947 1.045407 TGGTCAAGTAACTCCGTGCT 58.955 50.000 0.00 0.00 0.00 4.40
924 952 0.666577 AAGTAACTCCGTGCTCGTGC 60.667 55.000 7.47 1.71 40.20 5.34
967 995 0.682855 CCCGAAGCAGAGGAGAGAGT 60.683 60.000 0.00 0.00 0.00 3.24
973 1001 3.162147 AGCAGAGGAGAGAGTTGTACA 57.838 47.619 0.00 0.00 0.00 2.90
982 1010 4.320641 GGAGAGAGTTGTACATCGATAGGC 60.321 50.000 0.00 0.00 0.00 3.93
984 1012 4.277174 AGAGAGTTGTACATCGATAGGCTG 59.723 45.833 0.00 0.00 0.00 4.85
1106 1141 2.149578 CTACTGCTATTCCTGGCATGC 58.850 52.381 9.90 9.90 38.29 4.06
1130 1355 8.020819 TGCTTAATCAGTTACTTACATTGTTGC 58.979 33.333 0.00 0.00 0.00 4.17
1138 1363 7.273381 CAGTTACTTACATTGTTGCTTAATGGC 59.727 37.037 0.00 0.00 39.30 4.40
1143 1368 0.958091 TTGTTGCTTAATGGCGTGCT 59.042 45.000 0.00 0.00 34.52 4.40
1144 1369 1.814793 TGTTGCTTAATGGCGTGCTA 58.185 45.000 0.00 0.00 34.52 3.49
1145 1370 1.466950 TGTTGCTTAATGGCGTGCTAC 59.533 47.619 0.00 0.00 34.52 3.58
1147 1372 2.036958 TGCTTAATGGCGTGCTACAT 57.963 45.000 0.00 0.00 34.52 2.29
1151 1376 3.683989 CTTAATGGCGTGCTACATTGTG 58.316 45.455 0.00 0.00 37.80 3.33
1152 1377 1.533625 AATGGCGTGCTACATTGTGT 58.466 45.000 0.00 0.00 36.07 3.72
1153 1378 1.533625 ATGGCGTGCTACATTGTGTT 58.466 45.000 0.00 0.00 0.00 3.32
1155 1380 2.073056 TGGCGTGCTACATTGTGTTAG 58.927 47.619 0.00 0.00 0.00 2.34
1157 1382 1.463056 GCGTGCTACATTGTGTTAGCA 59.537 47.619 8.34 8.34 42.49 3.49
1158 1383 2.095853 GCGTGCTACATTGTGTTAGCAT 59.904 45.455 14.11 0.00 45.66 3.79
1159 1384 3.426159 GCGTGCTACATTGTGTTAGCATT 60.426 43.478 14.11 0.00 45.66 3.56
1160 1385 4.090729 CGTGCTACATTGTGTTAGCATTG 58.909 43.478 14.11 7.94 45.66 2.82
1161 1386 4.378356 CGTGCTACATTGTGTTAGCATTGT 60.378 41.667 14.11 0.00 45.66 2.71
1162 1387 5.088739 GTGCTACATTGTGTTAGCATTGTC 58.911 41.667 14.11 0.83 45.66 3.18
1163 1388 5.003160 TGCTACATTGTGTTAGCATTGTCT 58.997 37.500 8.34 0.00 40.21 3.41
1164 1389 5.106594 TGCTACATTGTGTTAGCATTGTCTG 60.107 40.000 8.34 0.00 40.21 3.51
1165 1390 5.122239 GCTACATTGTGTTAGCATTGTCTGA 59.878 40.000 0.00 0.00 35.45 3.27
1249 1822 0.544357 ACAGGTCCCAGATGAACGGA 60.544 55.000 0.00 0.00 0.00 4.69
1250 1823 0.613260 CAGGTCCCAGATGAACGGAA 59.387 55.000 0.00 0.00 0.00 4.30
1265 1838 3.195698 GAACGAGGGTGATGGCGC 61.196 66.667 0.00 0.00 0.00 6.53
1354 1937 3.717294 ATGGTCCTGACGGTGCCC 61.717 66.667 0.00 0.00 0.00 5.36
1441 2024 2.500098 GGGCAAGTACTACTCCATCACA 59.500 50.000 0.00 0.00 0.00 3.58
1576 2162 1.001760 GGACTCCTACTCCTGGGCA 59.998 63.158 0.00 0.00 0.00 5.36
1639 2225 2.797278 GGACGACCATGCGGAGGAT 61.797 63.158 0.00 0.00 41.30 3.24
1723 2310 1.741145 CCCCGTAAGAACAAATTCCGG 59.259 52.381 0.00 0.00 37.09 5.14
1732 2319 0.174845 ACAAATTCCGGCGATCTCGA 59.825 50.000 9.30 0.00 43.02 4.04
1770 2363 4.267928 CGATTCTCTGTGACGGAATTAACC 59.732 45.833 0.00 0.00 30.98 2.85
2553 3198 2.543777 AACAAGCGGCTTCTAAGACA 57.456 45.000 13.24 0.00 31.90 3.41
2554 3199 2.770164 ACAAGCGGCTTCTAAGACAT 57.230 45.000 13.24 0.00 31.90 3.06
2555 3200 3.059352 ACAAGCGGCTTCTAAGACATT 57.941 42.857 13.24 0.00 31.90 2.71
2556 3201 3.003480 ACAAGCGGCTTCTAAGACATTC 58.997 45.455 13.24 0.00 31.90 2.67
2557 3202 3.265791 CAAGCGGCTTCTAAGACATTCT 58.734 45.455 13.24 0.00 31.90 2.40
2608 3271 5.030147 TGGTTAGGTGGACAGTGATATCTT 58.970 41.667 3.98 0.00 0.00 2.40
2609 3272 5.104941 TGGTTAGGTGGACAGTGATATCTTG 60.105 44.000 3.98 5.38 0.00 3.02
2610 3273 5.360591 GTTAGGTGGACAGTGATATCTTGG 58.639 45.833 3.98 0.00 0.00 3.61
2617 3280 4.503991 GGACAGTGATATCTTGGTCCATCC 60.504 50.000 23.57 12.99 43.27 3.51
2632 3295 0.324943 CATCCGGGTTCAAGTCCTGT 59.675 55.000 0.00 0.00 0.00 4.00
2638 3301 0.868406 GGTTCAAGTCCTGTTGCTCG 59.132 55.000 0.00 0.00 0.00 5.03
2640 3303 0.179059 TTCAAGTCCTGTTGCTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
2641 3304 0.035317 TCAAGTCCTGTTGCTCGCAT 59.965 50.000 0.00 0.00 0.00 4.73
2642 3305 0.877071 CAAGTCCTGTTGCTCGCATT 59.123 50.000 0.00 0.00 0.00 3.56
2644 3307 2.472695 AGTCCTGTTGCTCGCATTTA 57.527 45.000 0.00 0.00 0.00 1.40
2645 3308 2.991250 AGTCCTGTTGCTCGCATTTAT 58.009 42.857 0.00 0.00 0.00 1.40
2646 3309 3.347216 AGTCCTGTTGCTCGCATTTATT 58.653 40.909 0.00 0.00 0.00 1.40
2647 3310 3.375299 AGTCCTGTTGCTCGCATTTATTC 59.625 43.478 0.00 0.00 0.00 1.75
2648 3311 2.682856 TCCTGTTGCTCGCATTTATTCC 59.317 45.455 0.00 0.00 0.00 3.01
2649 3312 2.684881 CCTGTTGCTCGCATTTATTCCT 59.315 45.455 0.00 0.00 0.00 3.36
2650 3313 3.488047 CCTGTTGCTCGCATTTATTCCTG 60.488 47.826 0.00 0.00 0.00 3.86
2651 3314 3.081061 TGTTGCTCGCATTTATTCCTGT 58.919 40.909 0.00 0.00 0.00 4.00
2652 3315 4.257731 TGTTGCTCGCATTTATTCCTGTA 58.742 39.130 0.00 0.00 0.00 2.74
2653 3316 4.881273 TGTTGCTCGCATTTATTCCTGTAT 59.119 37.500 0.00 0.00 0.00 2.29
2654 3317 5.356751 TGTTGCTCGCATTTATTCCTGTATT 59.643 36.000 0.00 0.00 0.00 1.89
2655 3318 6.127758 TGTTGCTCGCATTTATTCCTGTATTT 60.128 34.615 0.00 0.00 0.00 1.40
2656 3319 7.066404 TGTTGCTCGCATTTATTCCTGTATTTA 59.934 33.333 0.00 0.00 0.00 1.40
2657 3320 7.744087 TGCTCGCATTTATTCCTGTATTTAT 57.256 32.000 0.00 0.00 0.00 1.40
2658 3321 8.165239 TGCTCGCATTTATTCCTGTATTTATT 57.835 30.769 0.00 0.00 0.00 1.40
2659 3322 8.629158 TGCTCGCATTTATTCCTGTATTTATTT 58.371 29.630 0.00 0.00 0.00 1.40
2660 3323 9.118236 GCTCGCATTTATTCCTGTATTTATTTC 57.882 33.333 0.00 0.00 0.00 2.17
2662 3325 8.286800 TCGCATTTATTCCTGTATTTATTTCGG 58.713 33.333 0.00 0.00 0.00 4.30
2663 3326 7.537306 CGCATTTATTCCTGTATTTATTTCGGG 59.463 37.037 0.00 0.00 0.00 5.14
2664 3327 8.573035 GCATTTATTCCTGTATTTATTTCGGGA 58.427 33.333 0.00 0.00 35.19 5.14
2670 3333 8.671384 TTCCTGTATTTATTTCGGGATTACAG 57.329 34.615 0.00 0.00 36.65 2.74
2671 3334 6.708949 TCCTGTATTTATTTCGGGATTACAGC 59.291 38.462 0.00 0.00 32.48 4.40
2673 3336 6.282167 TGTATTTATTTCGGGATTACAGCGA 58.718 36.000 0.00 0.00 0.00 4.93
2674 3337 6.932400 TGTATTTATTTCGGGATTACAGCGAT 59.068 34.615 0.00 0.00 0.00 4.58
2675 3338 5.666969 TTTATTTCGGGATTACAGCGATG 57.333 39.130 0.00 0.00 0.00 3.84
2676 3339 1.295792 TTTCGGGATTACAGCGATGC 58.704 50.000 0.00 0.00 0.00 3.91
2677 3340 0.874175 TTCGGGATTACAGCGATGCG 60.874 55.000 0.00 0.00 0.00 4.73
2712 3520 1.642037 CGTTCCTGGCGACTACGAGA 61.642 60.000 0.00 0.00 42.66 4.04
2767 3587 4.072131 GTCTTTTGGAGGTGCACATAGAA 58.928 43.478 20.43 4.81 0.00 2.10
2773 3593 3.031736 GGAGGTGCACATAGAAGTAGGA 58.968 50.000 20.43 0.00 0.00 2.94
2783 3603 4.643334 ACATAGAAGTAGGATGTGCGTGTA 59.357 41.667 0.00 0.00 32.62 2.90
2785 3605 6.489022 ACATAGAAGTAGGATGTGCGTGTATA 59.511 38.462 0.00 0.00 32.62 1.47
2800 3622 7.812669 TGTGCGTGTATATTTATAGGATGAGTG 59.187 37.037 0.00 0.00 0.00 3.51
2801 3623 7.813148 GTGCGTGTATATTTATAGGATGAGTGT 59.187 37.037 0.00 0.00 0.00 3.55
2825 5752 7.596248 TGTATGCATGTATATATGAGCGCATAG 59.404 37.037 15.51 1.82 40.60 2.23
2899 5826 0.512952 CTTGCGTTCCTTTCCTCGTG 59.487 55.000 0.00 0.00 0.00 4.35
2900 5827 0.882927 TTGCGTTCCTTTCCTCGTGG 60.883 55.000 0.00 0.00 0.00 4.94
2905 5832 1.125093 TTCCTTTCCTCGTGGCAGGA 61.125 55.000 16.31 16.31 41.16 3.86
3118 6047 7.377398 CCATTGTAACATCCTGAATTTTGACA 58.623 34.615 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.031043 TGCTGCAGTTGTTGATGCAC 59.969 50.000 16.64 0.00 46.97 4.57
2 3 1.001048 TCTTGCTGCAGTTGTTGATGC 60.001 47.619 16.64 0.00 42.86 3.91
6 7 2.351447 CCAGATCTTGCTGCAGTTGTTG 60.351 50.000 16.64 5.30 34.56 3.33
7 8 1.884579 CCAGATCTTGCTGCAGTTGTT 59.115 47.619 16.64 1.04 34.56 2.83
8 9 1.202855 ACCAGATCTTGCTGCAGTTGT 60.203 47.619 16.64 0.00 34.56 3.32
9 10 1.199327 CACCAGATCTTGCTGCAGTTG 59.801 52.381 16.64 6.01 34.56 3.16
10 11 1.531423 CACCAGATCTTGCTGCAGTT 58.469 50.000 16.64 0.00 34.56 3.16
11 12 0.322277 CCACCAGATCTTGCTGCAGT 60.322 55.000 16.64 0.00 34.56 4.40
12 13 0.035725 TCCACCAGATCTTGCTGCAG 60.036 55.000 10.11 10.11 34.56 4.41
13 14 0.035725 CTCCACCAGATCTTGCTGCA 60.036 55.000 0.00 0.00 34.56 4.41
14 15 1.375098 GCTCCACCAGATCTTGCTGC 61.375 60.000 0.00 0.00 34.56 5.25
15 16 0.035725 TGCTCCACCAGATCTTGCTG 60.036 55.000 0.00 0.00 35.66 4.41
16 17 0.035630 GTGCTCCACCAGATCTTGCT 60.036 55.000 0.00 0.00 0.00 3.91
17 18 2.475666 GTGCTCCACCAGATCTTGC 58.524 57.895 0.00 0.00 0.00 4.01
27 28 1.147153 GCCTCCATAGGTGCTCCAC 59.853 63.158 7.70 0.00 45.64 4.02
28 29 1.003442 AGCCTCCATAGGTGCTCCA 59.997 57.895 7.70 0.00 45.64 3.86
29 30 1.050988 TGAGCCTCCATAGGTGCTCC 61.051 60.000 19.71 0.00 45.64 4.70
30 31 0.833287 TTGAGCCTCCATAGGTGCTC 59.167 55.000 17.36 17.36 45.64 4.26
31 32 0.835941 CTTGAGCCTCCATAGGTGCT 59.164 55.000 3.23 3.23 45.64 4.40
32 33 0.179034 CCTTGAGCCTCCATAGGTGC 60.179 60.000 0.00 0.00 45.64 5.01
33 34 0.471617 CCCTTGAGCCTCCATAGGTG 59.528 60.000 0.00 0.00 45.64 4.00
34 35 1.348775 GCCCTTGAGCCTCCATAGGT 61.349 60.000 0.00 0.00 45.64 3.08
35 36 1.453669 GCCCTTGAGCCTCCATAGG 59.546 63.158 0.00 0.00 46.76 2.57
36 37 1.070445 CGCCCTTGAGCCTCCATAG 59.930 63.158 0.00 0.00 0.00 2.23
37 38 1.382557 TCGCCCTTGAGCCTCCATA 60.383 57.895 0.00 0.00 0.00 2.74
38 39 2.688666 TCGCCCTTGAGCCTCCAT 60.689 61.111 0.00 0.00 0.00 3.41
39 40 3.706373 GTCGCCCTTGAGCCTCCA 61.706 66.667 0.00 0.00 0.00 3.86
40 41 4.821589 CGTCGCCCTTGAGCCTCC 62.822 72.222 0.00 0.00 0.00 4.30
56 57 2.324332 ATCACACGTCGAGCTAGGCG 62.324 60.000 19.53 19.53 45.76 5.52
57 58 0.867753 CATCACACGTCGAGCTAGGC 60.868 60.000 0.00 0.00 0.00 3.93
58 59 0.733150 TCATCACACGTCGAGCTAGG 59.267 55.000 0.00 0.00 0.00 3.02
59 60 1.398739 ACTCATCACACGTCGAGCTAG 59.601 52.381 0.00 0.00 0.00 3.42
60 61 1.450025 ACTCATCACACGTCGAGCTA 58.550 50.000 0.00 0.00 0.00 3.32
61 62 0.598562 AACTCATCACACGTCGAGCT 59.401 50.000 0.00 0.00 0.00 4.09
62 63 1.419374 AAACTCATCACACGTCGAGC 58.581 50.000 0.00 0.00 0.00 5.03
63 64 5.763444 ATAAAAACTCATCACACGTCGAG 57.237 39.130 0.00 0.00 0.00 4.04
64 65 6.018588 ACAAATAAAAACTCATCACACGTCGA 60.019 34.615 0.00 0.00 0.00 4.20
65 66 6.133392 ACAAATAAAAACTCATCACACGTCG 58.867 36.000 0.00 0.00 0.00 5.12
66 67 7.642194 TCAACAAATAAAAACTCATCACACGTC 59.358 33.333 0.00 0.00 0.00 4.34
67 68 7.476667 TCAACAAATAAAAACTCATCACACGT 58.523 30.769 0.00 0.00 0.00 4.49
68 69 7.906611 TCAACAAATAAAAACTCATCACACG 57.093 32.000 0.00 0.00 0.00 4.49
69 70 9.301153 AGTTCAACAAATAAAAACTCATCACAC 57.699 29.630 0.00 0.00 0.00 3.82
102 103 9.371136 TGCAACAACAAAATAGTTCAATACAAA 57.629 25.926 0.00 0.00 0.00 2.83
103 104 8.812329 GTGCAACAACAAAATAGTTCAATACAA 58.188 29.630 0.00 0.00 36.32 2.41
104 105 8.194104 AGTGCAACAACAAAATAGTTCAATACA 58.806 29.630 0.00 0.00 41.43 2.29
105 106 8.574196 AGTGCAACAACAAAATAGTTCAATAC 57.426 30.769 0.00 0.00 41.43 1.89
107 108 9.762933 AATAGTGCAACAACAAAATAGTTCAAT 57.237 25.926 0.00 0.00 41.43 2.57
108 109 9.593134 AAATAGTGCAACAACAAAATAGTTCAA 57.407 25.926 0.00 0.00 41.43 2.69
109 110 9.593134 AAAATAGTGCAACAACAAAATAGTTCA 57.407 25.926 0.00 0.00 41.43 3.18
110 111 9.848172 CAAAATAGTGCAACAACAAAATAGTTC 57.152 29.630 0.00 0.00 41.43 3.01
111 112 9.377312 ACAAAATAGTGCAACAACAAAATAGTT 57.623 25.926 0.00 0.00 41.43 2.24
112 113 8.940768 ACAAAATAGTGCAACAACAAAATAGT 57.059 26.923 0.00 0.00 41.43 2.12
113 114 9.635632 CAACAAAATAGTGCAACAACAAAATAG 57.364 29.630 0.00 0.00 41.43 1.73
114 115 9.371136 TCAACAAAATAGTGCAACAACAAAATA 57.629 25.926 0.00 0.00 41.43 1.40
115 116 8.261492 TCAACAAAATAGTGCAACAACAAAAT 57.739 26.923 0.00 0.00 41.43 1.82
116 117 7.658179 TCAACAAAATAGTGCAACAACAAAA 57.342 28.000 0.00 0.00 41.43 2.44
117 118 7.360438 GGTTCAACAAAATAGTGCAACAACAAA 60.360 33.333 0.00 0.00 41.43 2.83
118 119 6.091441 GGTTCAACAAAATAGTGCAACAACAA 59.909 34.615 0.00 0.00 41.43 2.83
119 120 5.578727 GGTTCAACAAAATAGTGCAACAACA 59.421 36.000 0.00 0.00 41.43 3.33
120 121 5.578727 TGGTTCAACAAAATAGTGCAACAAC 59.421 36.000 0.00 0.00 41.43 3.32
121 122 5.724328 TGGTTCAACAAAATAGTGCAACAA 58.276 33.333 0.00 0.00 41.43 2.83
122 123 5.330455 TGGTTCAACAAAATAGTGCAACA 57.670 34.783 0.00 0.00 41.43 3.33
123 124 6.843069 AATGGTTCAACAAAATAGTGCAAC 57.157 33.333 0.00 0.00 0.00 4.17
124 125 7.044181 TCAAATGGTTCAACAAAATAGTGCAA 58.956 30.769 0.00 0.00 0.00 4.08
125 126 6.577103 TCAAATGGTTCAACAAAATAGTGCA 58.423 32.000 0.00 0.00 0.00 4.57
126 127 7.656707 ATCAAATGGTTCAACAAAATAGTGC 57.343 32.000 0.00 0.00 0.00 4.40
131 132 9.176460 ACAGAAAATCAAATGGTTCAACAAAAT 57.824 25.926 0.00 0.00 0.00 1.82
132 133 8.449397 CACAGAAAATCAAATGGTTCAACAAAA 58.551 29.630 0.00 0.00 0.00 2.44
133 134 7.821359 TCACAGAAAATCAAATGGTTCAACAAA 59.179 29.630 0.00 0.00 0.00 2.83
134 135 7.326454 TCACAGAAAATCAAATGGTTCAACAA 58.674 30.769 0.00 0.00 0.00 2.83
135 136 6.871844 TCACAGAAAATCAAATGGTTCAACA 58.128 32.000 0.00 0.00 0.00 3.33
136 137 7.652909 TCATCACAGAAAATCAAATGGTTCAAC 59.347 33.333 0.00 0.00 0.00 3.18
137 138 7.724287 TCATCACAGAAAATCAAATGGTTCAA 58.276 30.769 0.00 0.00 0.00 2.69
138 139 7.287512 TCATCACAGAAAATCAAATGGTTCA 57.712 32.000 0.00 0.00 0.00 3.18
139 140 7.869429 AGTTCATCACAGAAAATCAAATGGTTC 59.131 33.333 0.00 0.00 0.00 3.62
140 141 7.729116 AGTTCATCACAGAAAATCAAATGGTT 58.271 30.769 0.00 0.00 0.00 3.67
141 142 7.294017 AGTTCATCACAGAAAATCAAATGGT 57.706 32.000 0.00 0.00 0.00 3.55
142 143 9.297586 CATAGTTCATCACAGAAAATCAAATGG 57.702 33.333 0.00 0.00 0.00 3.16
143 144 9.850628 ACATAGTTCATCACAGAAAATCAAATG 57.149 29.630 0.00 0.00 0.00 2.32
144 145 9.850628 CACATAGTTCATCACAGAAAATCAAAT 57.149 29.630 0.00 0.00 0.00 2.32
145 146 9.065798 TCACATAGTTCATCACAGAAAATCAAA 57.934 29.630 0.00 0.00 0.00 2.69
146 147 8.620116 TCACATAGTTCATCACAGAAAATCAA 57.380 30.769 0.00 0.00 0.00 2.57
147 148 8.797350 ATCACATAGTTCATCACAGAAAATCA 57.203 30.769 0.00 0.00 0.00 2.57
188 189 2.546368 CGGTTCGGTGTTGAATTCTCAA 59.454 45.455 7.05 0.00 39.30 3.02
189 190 2.139917 CGGTTCGGTGTTGAATTCTCA 58.860 47.619 7.05 3.58 0.00 3.27
190 191 1.136057 GCGGTTCGGTGTTGAATTCTC 60.136 52.381 7.05 0.90 0.00 2.87
191 192 0.872388 GCGGTTCGGTGTTGAATTCT 59.128 50.000 7.05 0.00 0.00 2.40
192 193 0.452122 CGCGGTTCGGTGTTGAATTC 60.452 55.000 0.00 0.00 33.78 2.17
193 194 0.881159 TCGCGGTTCGGTGTTGAATT 60.881 50.000 6.13 0.00 39.05 2.17
194 195 1.301087 TCGCGGTTCGGTGTTGAAT 60.301 52.632 6.13 0.00 39.05 2.57
195 196 2.106534 TCGCGGTTCGGTGTTGAA 59.893 55.556 6.13 0.00 39.05 2.69
196 197 2.659244 GTCGCGGTTCGGTGTTGA 60.659 61.111 6.13 0.00 39.05 3.18
197 198 4.054455 CGTCGCGGTTCGGTGTTG 62.054 66.667 6.13 0.00 39.05 3.33
198 199 3.771568 TTCGTCGCGGTTCGGTGTT 62.772 57.895 6.13 0.00 39.05 3.32
199 200 4.268939 TTCGTCGCGGTTCGGTGT 62.269 61.111 6.13 0.00 39.05 4.16
200 201 3.759828 GTTCGTCGCGGTTCGGTG 61.760 66.667 6.13 0.00 39.05 4.94
203 204 3.759828 GTGGTTCGTCGCGGTTCG 61.760 66.667 6.13 9.61 40.15 3.95
204 205 3.759828 CGTGGTTCGTCGCGGTTC 61.760 66.667 6.13 0.00 37.05 3.62
211 212 0.575390 CATATTCGGCGTGGTTCGTC 59.425 55.000 6.85 0.00 42.13 4.20
212 213 0.808453 CCATATTCGGCGTGGTTCGT 60.808 55.000 6.85 0.00 42.13 3.85
213 214 1.495584 CCCATATTCGGCGTGGTTCG 61.496 60.000 6.85 0.00 43.12 3.95
214 215 1.782028 GCCCATATTCGGCGTGGTTC 61.782 60.000 6.85 0.00 36.47 3.62
215 216 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
216 217 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
221 222 0.321653 AGAATCGGCCCATATTCGGC 60.322 55.000 12.18 2.38 46.29 5.54
222 223 1.726853 GAGAATCGGCCCATATTCGG 58.273 55.000 12.18 0.00 37.22 4.30
244 245 3.081804 GACGAATAAAGGCCCCATATGG 58.918 50.000 15.41 15.41 0.00 2.74
245 246 2.742053 CGACGAATAAAGGCCCCATATG 59.258 50.000 0.00 0.00 0.00 1.78
246 247 2.635915 TCGACGAATAAAGGCCCCATAT 59.364 45.455 0.00 0.00 0.00 1.78
247 248 2.040939 TCGACGAATAAAGGCCCCATA 58.959 47.619 0.00 0.00 0.00 2.74
248 249 0.834612 TCGACGAATAAAGGCCCCAT 59.165 50.000 0.00 0.00 0.00 4.00
249 250 0.614294 TTCGACGAATAAAGGCCCCA 59.386 50.000 6.10 0.00 0.00 4.96
250 251 1.669265 CTTTCGACGAATAAAGGCCCC 59.331 52.381 11.71 0.00 0.00 5.80
251 252 2.095372 CACTTTCGACGAATAAAGGCCC 59.905 50.000 11.71 0.00 37.09 5.80
252 253 2.095372 CCACTTTCGACGAATAAAGGCC 59.905 50.000 11.71 0.00 37.09 5.19
253 254 2.095372 CCCACTTTCGACGAATAAAGGC 59.905 50.000 11.71 0.00 37.09 4.35
254 255 2.095372 GCCCACTTTCGACGAATAAAGG 59.905 50.000 11.71 11.28 37.09 3.11
255 256 2.095372 GGCCCACTTTCGACGAATAAAG 59.905 50.000 11.71 8.60 38.41 1.85
256 257 2.078392 GGCCCACTTTCGACGAATAAA 58.922 47.619 11.71 0.00 0.00 1.40
257 258 1.729284 GGCCCACTTTCGACGAATAA 58.271 50.000 11.71 0.00 0.00 1.40
258 259 0.458889 CGGCCCACTTTCGACGAATA 60.459 55.000 11.71 1.99 0.00 1.75
259 260 1.740296 CGGCCCACTTTCGACGAAT 60.740 57.895 11.71 0.00 0.00 3.34
260 261 2.356553 CGGCCCACTTTCGACGAA 60.357 61.111 6.10 6.10 0.00 3.85
261 262 2.366480 TTTCGGCCCACTTTCGACGA 62.366 55.000 0.00 0.00 32.39 4.20
262 263 1.500512 TTTTCGGCCCACTTTCGACG 61.501 55.000 0.00 0.00 32.39 5.12
263 264 0.040692 GTTTTCGGCCCACTTTCGAC 60.041 55.000 0.00 0.00 32.39 4.20
264 265 0.179040 AGTTTTCGGCCCACTTTCGA 60.179 50.000 0.00 0.00 0.00 3.71
265 266 0.040425 CAGTTTTCGGCCCACTTTCG 60.040 55.000 0.00 0.00 0.00 3.46
266 267 0.313987 CCAGTTTTCGGCCCACTTTC 59.686 55.000 0.00 0.00 0.00 2.62
267 268 1.112916 CCCAGTTTTCGGCCCACTTT 61.113 55.000 0.00 0.00 0.00 2.66
268 269 1.530655 CCCAGTTTTCGGCCCACTT 60.531 57.895 0.00 0.00 0.00 3.16
269 270 2.115266 CCCAGTTTTCGGCCCACT 59.885 61.111 0.00 0.00 0.00 4.00
270 271 3.680786 GCCCAGTTTTCGGCCCAC 61.681 66.667 0.00 0.00 39.39 4.61
274 275 1.215382 GATTGGCCCAGTTTTCGGC 59.785 57.895 0.00 0.00 44.92 5.54
275 276 0.811281 GAGATTGGCCCAGTTTTCGG 59.189 55.000 0.00 0.00 0.00 4.30
276 277 0.447801 CGAGATTGGCCCAGTTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
277 278 1.468914 GTCGAGATTGGCCCAGTTTTC 59.531 52.381 0.00 0.00 0.00 2.29
278 279 1.534729 GTCGAGATTGGCCCAGTTTT 58.465 50.000 0.00 0.00 0.00 2.43
279 280 0.673644 CGTCGAGATTGGCCCAGTTT 60.674 55.000 0.00 0.00 0.00 2.66
280 281 1.079127 CGTCGAGATTGGCCCAGTT 60.079 57.895 0.00 0.00 0.00 3.16
281 282 2.579201 CGTCGAGATTGGCCCAGT 59.421 61.111 0.00 0.00 0.00 4.00
282 283 2.892425 GCGTCGAGATTGGCCCAG 60.892 66.667 0.00 0.00 0.00 4.45
283 284 4.467084 GGCGTCGAGATTGGCCCA 62.467 66.667 0.00 0.00 39.67 5.36
284 285 4.162690 AGGCGTCGAGATTGGCCC 62.163 66.667 0.00 0.00 46.75 5.80
285 286 2.892425 CAGGCGTCGAGATTGGCC 60.892 66.667 0.00 0.00 45.91 5.36
286 287 2.892425 CCAGGCGTCGAGATTGGC 60.892 66.667 0.00 0.00 0.00 4.52
287 288 2.202932 CCCAGGCGTCGAGATTGG 60.203 66.667 0.00 0.00 0.00 3.16
288 289 2.202932 CCCCAGGCGTCGAGATTG 60.203 66.667 0.00 0.00 0.00 2.67
289 290 2.363795 TCCCCAGGCGTCGAGATT 60.364 61.111 0.00 0.00 0.00 2.40
290 291 3.148279 GTCCCCAGGCGTCGAGAT 61.148 66.667 0.00 0.00 0.00 2.75
317 318 3.950794 TTGGTCATCCAGCCGTCGC 62.951 63.158 0.00 0.00 45.22 5.19
318 319 2.100631 GTTGGTCATCCAGCCGTCG 61.101 63.158 0.00 0.00 45.22 5.12
319 320 3.890674 GTTGGTCATCCAGCCGTC 58.109 61.111 0.00 0.00 45.22 4.79
323 324 3.134127 GGCGGTTGGTCATCCAGC 61.134 66.667 0.00 0.00 45.22 4.85
324 325 2.438434 GGGCGGTTGGTCATCCAG 60.438 66.667 0.00 0.00 45.22 3.86
325 326 4.041762 GGGGCGGTTGGTCATCCA 62.042 66.667 0.00 0.00 42.66 3.41
326 327 3.995506 CTGGGGCGGTTGGTCATCC 62.996 68.421 0.00 0.00 0.00 3.51
327 328 2.438434 CTGGGGCGGTTGGTCATC 60.438 66.667 0.00 0.00 0.00 2.92
328 329 4.740822 GCTGGGGCGGTTGGTCAT 62.741 66.667 0.00 0.00 0.00 3.06
338 339 4.235762 TAGAATCGGCGCTGGGGC 62.236 66.667 17.88 8.28 37.98 5.80
339 340 2.280186 GTAGAATCGGCGCTGGGG 60.280 66.667 17.88 0.00 0.00 4.96
340 341 2.280186 GGTAGAATCGGCGCTGGG 60.280 66.667 17.88 1.40 0.00 4.45
341 342 2.658593 CGGTAGAATCGGCGCTGG 60.659 66.667 17.88 4.31 0.00 4.85
342 343 3.330853 GCGGTAGAATCGGCGCTG 61.331 66.667 10.86 10.86 0.00 5.18
343 344 4.587189 GGCGGTAGAATCGGCGCT 62.587 66.667 7.64 0.00 42.80 5.92
347 348 3.843117 GAGCCGGCGGTAGAATCGG 62.843 68.421 28.82 0.00 44.70 4.18
348 349 2.354773 GAGCCGGCGGTAGAATCG 60.355 66.667 28.82 0.00 0.00 3.34
349 350 2.354773 CGAGCCGGCGGTAGAATC 60.355 66.667 28.82 15.99 0.00 2.52
350 351 3.135056 GACGAGCCGGCGGTAGAAT 62.135 63.158 28.82 9.75 35.12 2.40
351 352 3.818787 GACGAGCCGGCGGTAGAA 61.819 66.667 28.82 0.00 35.12 2.10
366 367 1.729284 TAAAAATCGCCGTCTGGGAC 58.271 50.000 0.00 0.00 38.94 4.46
367 368 2.285083 CATAAAAATCGCCGTCTGGGA 58.715 47.619 0.00 0.00 40.60 4.37
368 369 1.268539 GCATAAAAATCGCCGTCTGGG 60.269 52.381 0.00 0.00 39.58 4.45
369 370 1.268539 GGCATAAAAATCGCCGTCTGG 60.269 52.381 0.00 0.00 35.79 3.86
370 371 2.105323 GGCATAAAAATCGCCGTCTG 57.895 50.000 0.00 0.00 35.79 3.51
375 376 0.310854 CCGGAGGCATAAAAATCGCC 59.689 55.000 0.00 0.00 46.14 5.54
376 377 3.845625 CCGGAGGCATAAAAATCGC 57.154 52.632 0.00 0.00 46.14 4.58
401 402 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
410 411 0.872021 CGGTGCCGTAAGAGCATCTC 60.872 60.000 1.93 0.00 43.49 2.75
411 412 1.141881 CGGTGCCGTAAGAGCATCT 59.858 57.895 1.93 0.00 43.49 2.90
412 413 1.883084 CCGGTGCCGTAAGAGCATC 60.883 63.158 9.90 0.00 43.49 3.91
413 414 2.186903 CCGGTGCCGTAAGAGCAT 59.813 61.111 9.90 0.00 43.49 3.79
414 415 2.992689 TCCGGTGCCGTAAGAGCA 60.993 61.111 9.90 0.00 40.40 4.26
415 416 2.202756 CTCCGGTGCCGTAAGAGC 60.203 66.667 9.90 0.00 43.02 4.09
416 417 2.202756 GCTCCGGTGCCGTAAGAG 60.203 66.667 17.73 9.86 43.02 2.85
417 418 2.678934 AGCTCCGGTGCCGTAAGA 60.679 61.111 24.18 0.00 43.02 2.10
418 419 2.202756 GAGCTCCGGTGCCGTAAG 60.203 66.667 24.18 1.97 37.81 2.34
419 420 4.124351 CGAGCTCCGGTGCCGTAA 62.124 66.667 24.18 0.00 37.81 3.18
484 485 2.074942 CGAATTTACCGTCGCTGCA 58.925 52.632 0.00 0.00 0.00 4.41
491 492 1.202440 TGGCTATCGCGAATTTACCGT 60.202 47.619 15.24 0.00 36.88 4.83
494 495 2.475487 GGAGTGGCTATCGCGAATTTAC 59.525 50.000 15.24 9.30 36.88 2.01
495 496 2.547218 GGGAGTGGCTATCGCGAATTTA 60.547 50.000 15.24 0.00 36.88 1.40
496 497 1.583054 GGAGTGGCTATCGCGAATTT 58.417 50.000 15.24 0.00 36.88 1.82
497 498 0.249911 GGGAGTGGCTATCGCGAATT 60.250 55.000 15.24 0.00 36.88 2.17
498 499 1.367840 GGGAGTGGCTATCGCGAAT 59.632 57.895 15.24 4.42 36.88 3.34
499 500 2.792947 GGGGAGTGGCTATCGCGAA 61.793 63.158 15.24 1.32 36.88 4.70
500 501 3.224324 GGGGAGTGGCTATCGCGA 61.224 66.667 13.09 13.09 36.88 5.87
533 534 1.202486 TCTTTGTCAACGCTCCTTCGT 60.202 47.619 0.00 0.00 45.58 3.85
534 535 1.497991 TCTTTGTCAACGCTCCTTCG 58.502 50.000 0.00 0.00 0.00 3.79
536 537 3.003689 CACATTCTTTGTCAACGCTCCTT 59.996 43.478 0.00 0.00 36.00 3.36
561 574 1.714899 GCACACCTGCGTTGACTGTT 61.715 55.000 0.00 0.00 32.44 3.16
563 576 2.633657 GCACACCTGCGTTGACTG 59.366 61.111 0.00 0.00 32.44 3.51
594 607 1.012486 GGTCGCAACTAGGAACCACG 61.012 60.000 0.00 0.00 0.00 4.94
610 623 1.421480 GGTATGGTCTGGGTAGGGTC 58.579 60.000 0.00 0.00 0.00 4.46
625 638 2.432300 CCCTTGACGGCCTCGGTAT 61.432 63.158 0.00 0.00 41.39 2.73
626 639 3.072468 CCCTTGACGGCCTCGGTA 61.072 66.667 0.00 0.00 41.39 4.02
686 699 2.500098 TGGGTAGTCTCAATGCCACTAC 59.500 50.000 11.04 11.04 41.19 2.73
691 704 1.279271 ACTGTGGGTAGTCTCAATGCC 59.721 52.381 0.00 0.00 0.00 4.40
695 708 3.157881 CTCTCACTGTGGGTAGTCTCAA 58.842 50.000 7.67 0.00 0.00 3.02
696 709 2.555448 CCTCTCACTGTGGGTAGTCTCA 60.555 54.545 7.67 0.00 0.00 3.27
701 714 0.247736 GTGCCTCTCACTGTGGGTAG 59.752 60.000 7.67 4.09 42.38 3.18
702 715 1.192146 GGTGCCTCTCACTGTGGGTA 61.192 60.000 7.67 0.00 44.98 3.69
703 716 2.520536 GGTGCCTCTCACTGTGGGT 61.521 63.158 7.67 0.00 44.98 4.51
704 717 2.177594 GAGGTGCCTCTCACTGTGGG 62.178 65.000 10.80 4.27 44.98 4.61
705 718 1.294780 GAGGTGCCTCTCACTGTGG 59.705 63.158 10.80 0.00 44.98 4.17
706 719 1.080230 CGAGGTGCCTCTCACTGTG 60.080 63.158 15.40 0.17 44.98 3.66
707 720 0.613292 ATCGAGGTGCCTCTCACTGT 60.613 55.000 15.40 0.00 44.98 3.55
708 721 0.102120 GATCGAGGTGCCTCTCACTG 59.898 60.000 15.40 0.92 44.98 3.66
709 722 0.033601 AGATCGAGGTGCCTCTCACT 60.034 55.000 15.40 8.75 44.98 3.41
710 723 0.820871 AAGATCGAGGTGCCTCTCAC 59.179 55.000 15.40 6.91 44.90 3.51
711 724 0.820226 CAAGATCGAGGTGCCTCTCA 59.180 55.000 15.40 3.38 40.69 3.27
712 725 0.529555 GCAAGATCGAGGTGCCTCTC 60.530 60.000 15.40 7.81 40.69 3.20
713 726 1.519719 GCAAGATCGAGGTGCCTCT 59.480 57.895 15.40 0.00 40.69 3.69
714 727 1.880340 CGCAAGATCGAGGTGCCTC 60.880 63.158 8.14 8.14 43.02 4.70
715 728 2.185350 CGCAAGATCGAGGTGCCT 59.815 61.111 10.98 0.00 43.02 4.75
716 729 3.567797 GCGCAAGATCGAGGTGCC 61.568 66.667 0.30 2.65 43.02 5.01
717 730 3.918220 CGCGCAAGATCGAGGTGC 61.918 66.667 8.75 7.50 43.02 5.01
718 731 2.507102 ACGCGCAAGATCGAGGTG 60.507 61.111 5.73 0.00 43.02 4.00
719 732 2.507102 CACGCGCAAGATCGAGGT 60.507 61.111 5.73 0.00 43.02 3.85
896 918 1.203994 ACGGAGTTACTTGACCATCGG 59.796 52.381 0.00 0.00 37.78 4.18
900 928 1.000506 GAGCACGGAGTTACTTGACCA 59.999 52.381 0.00 0.00 41.61 4.02
967 995 3.028130 TGACCAGCCTATCGATGTACAA 58.972 45.455 8.54 0.00 0.00 2.41
973 1001 2.495270 CAGCTATGACCAGCCTATCGAT 59.505 50.000 2.16 2.16 42.84 3.59
982 1010 3.229293 TCATCTCTCCAGCTATGACCAG 58.771 50.000 0.00 0.00 0.00 4.00
984 1012 3.617045 GCATCATCTCTCCAGCTATGACC 60.617 52.174 0.00 0.00 31.56 4.02
1075 1110 4.722193 GCAGTAGCTTTGGAGGCA 57.278 55.556 0.00 0.00 37.91 4.75
1100 1135 6.677781 TGTAAGTAACTGATTAAGCATGCC 57.322 37.500 15.66 0.00 0.00 4.40
1130 1355 3.126858 ACACAATGTAGCACGCCATTAAG 59.873 43.478 0.00 0.00 30.41 1.85
1136 1361 1.202031 GCTAACACAATGTAGCACGCC 60.202 52.381 2.07 0.00 35.76 5.68
1138 1363 4.090729 CAATGCTAACACAATGTAGCACG 58.909 43.478 11.03 3.18 46.55 5.34
1143 1368 6.147656 CAGTCAGACAATGCTAACACAATGTA 59.852 38.462 2.66 0.00 0.00 2.29
1144 1369 5.049198 CAGTCAGACAATGCTAACACAATGT 60.049 40.000 2.66 0.00 0.00 2.71
1145 1370 5.179929 TCAGTCAGACAATGCTAACACAATG 59.820 40.000 2.66 0.00 0.00 2.82
1147 1372 4.511454 GTCAGTCAGACAATGCTAACACAA 59.489 41.667 2.66 0.00 46.77 3.33
1161 1386 0.038251 GGCATCACGTGTCAGTCAGA 60.038 55.000 16.51 0.00 30.99 3.27
1162 1387 0.319813 TGGCATCACGTGTCAGTCAG 60.320 55.000 16.51 0.31 37.56 3.51
1163 1388 1.745264 TGGCATCACGTGTCAGTCA 59.255 52.632 16.51 11.32 37.56 3.41
1164 1389 4.673403 TGGCATCACGTGTCAGTC 57.327 55.556 16.51 8.75 37.56 3.51
1249 1822 4.778143 GGCGCCATCACCCTCGTT 62.778 66.667 24.80 0.00 0.00 3.85
1265 1838 2.653130 GTACGGGATCGCGTTCGG 60.653 66.667 37.46 11.24 40.63 4.30
1387 1970 3.746949 CTGCTGCCGGATGGAGGAC 62.747 68.421 5.05 0.00 37.49 3.85
1576 2162 1.986210 GCCCTGCTTGGCCTTGAAT 60.986 57.895 3.32 0.00 46.11 2.57
1702 2288 2.429478 CGGAATTTGTTCTTACGGGGT 58.571 47.619 0.00 0.00 0.00 4.95
1723 2310 3.851976 ATTAGGTATGGTCGAGATCGC 57.148 47.619 0.00 0.00 39.60 4.58
1732 2319 7.926555 CACAGAGAATCGTTTATTAGGTATGGT 59.073 37.037 0.00 0.00 42.67 3.55
1770 2363 2.159558 GCATGTTGTCTGCACAGATCAG 60.160 50.000 3.24 0.00 39.97 2.90
1992 2608 4.373116 GACCAGCGCGACCTCCAA 62.373 66.667 12.10 0.00 0.00 3.53
2428 3072 0.755698 ACGCATGGAGGGTCGACTAT 60.756 55.000 16.46 3.95 39.51 2.12
2574 3221 2.436417 CACCTAACCATCCAACCACAG 58.564 52.381 0.00 0.00 0.00 3.66
2608 3271 1.131303 ACTTGAACCCGGATGGACCA 61.131 55.000 0.73 0.00 38.90 4.02
2609 3272 0.392595 GACTTGAACCCGGATGGACC 60.393 60.000 0.73 0.00 37.49 4.46
2610 3273 0.392595 GGACTTGAACCCGGATGGAC 60.393 60.000 0.73 0.00 37.49 4.02
2617 3280 0.535102 AGCAACAGGACTTGAACCCG 60.535 55.000 0.00 0.00 0.00 5.28
2632 3295 6.449635 AAATACAGGAATAAATGCGAGCAA 57.550 33.333 0.57 0.00 0.00 3.91
2638 3301 8.573035 TCCCGAAATAAATACAGGAATAAATGC 58.427 33.333 0.00 0.00 0.00 3.56
2644 3307 9.284968 CTGTAATCCCGAAATAAATACAGGAAT 57.715 33.333 0.00 0.00 36.66 3.01
2645 3308 7.227910 GCTGTAATCCCGAAATAAATACAGGAA 59.772 37.037 10.85 0.00 39.25 3.36
2646 3309 6.708949 GCTGTAATCCCGAAATAAATACAGGA 59.291 38.462 10.85 0.00 39.25 3.86
2647 3310 6.347402 CGCTGTAATCCCGAAATAAATACAGG 60.347 42.308 10.85 0.31 39.25 4.00
2648 3311 6.422701 TCGCTGTAATCCCGAAATAAATACAG 59.577 38.462 0.00 0.00 40.87 2.74
2649 3312 6.282167 TCGCTGTAATCCCGAAATAAATACA 58.718 36.000 0.00 0.00 0.00 2.29
2650 3313 6.774354 TCGCTGTAATCCCGAAATAAATAC 57.226 37.500 0.00 0.00 0.00 1.89
2651 3314 6.128391 GCATCGCTGTAATCCCGAAATAAATA 60.128 38.462 0.00 0.00 34.42 1.40
2652 3315 5.334879 GCATCGCTGTAATCCCGAAATAAAT 60.335 40.000 0.00 0.00 34.42 1.40
2653 3316 4.024387 GCATCGCTGTAATCCCGAAATAAA 60.024 41.667 0.00 0.00 34.42 1.40
2654 3317 3.496884 GCATCGCTGTAATCCCGAAATAA 59.503 43.478 0.00 0.00 34.42 1.40
2655 3318 3.064207 GCATCGCTGTAATCCCGAAATA 58.936 45.455 0.00 0.00 34.42 1.40
2656 3319 1.873591 GCATCGCTGTAATCCCGAAAT 59.126 47.619 0.00 0.00 34.42 2.17
2657 3320 1.295792 GCATCGCTGTAATCCCGAAA 58.704 50.000 0.00 0.00 34.42 3.46
2658 3321 0.874175 CGCATCGCTGTAATCCCGAA 60.874 55.000 0.00 0.00 34.42 4.30
2659 3322 1.299850 CGCATCGCTGTAATCCCGA 60.300 57.895 0.00 0.00 35.29 5.14
2660 3323 3.234390 CGCATCGCTGTAATCCCG 58.766 61.111 0.00 0.00 0.00 5.14
2671 3334 3.257561 CTCCCTGAACGCGCATCG 61.258 66.667 5.73 1.83 45.38 3.84
2673 3336 3.376935 CTCCTCCCTGAACGCGCAT 62.377 63.158 5.73 0.00 0.00 4.73
2674 3337 4.069232 CTCCTCCCTGAACGCGCA 62.069 66.667 5.73 0.00 0.00 6.09
2675 3338 3.760035 TCTCCTCCCTGAACGCGC 61.760 66.667 5.73 0.00 0.00 6.86
2676 3339 2.182030 GTCTCCTCCCTGAACGCG 59.818 66.667 3.53 3.53 0.00 6.01
2677 3340 2.156051 AACGTCTCCTCCCTGAACGC 62.156 60.000 0.00 0.00 0.00 4.84
2678 3341 0.109226 GAACGTCTCCTCCCTGAACG 60.109 60.000 0.00 0.00 0.00 3.95
2680 3343 2.667348 GGAACGTCTCCTCCCTGAA 58.333 57.895 8.87 0.00 41.61 3.02
2712 3520 7.308229 GGCATATCATCTTGAGATTTAAAGCGT 60.308 37.037 0.00 0.00 31.21 5.07
2767 3587 8.467598 CCTATAAATATACACGCACATCCTACT 58.532 37.037 0.00 0.00 0.00 2.57
2773 3593 8.531982 ACTCATCCTATAAATATACACGCACAT 58.468 33.333 0.00 0.00 0.00 3.21
2800 3622 6.775939 ATGCGCTCATATATACATGCATAC 57.224 37.500 9.73 0.00 39.78 2.39
2801 3623 7.039784 TCCTATGCGCTCATATATACATGCATA 60.040 37.037 9.73 15.39 41.56 3.14
2806 3628 5.531287 TCGTCCTATGCGCTCATATATACAT 59.469 40.000 9.73 0.00 34.88 2.29
2807 3629 4.879545 TCGTCCTATGCGCTCATATATACA 59.120 41.667 9.73 0.00 34.88 2.29
2899 5826 2.284190 GATGCTAGACTTTGTCCTGCC 58.716 52.381 0.00 0.00 32.97 4.85
2900 5827 2.977914 TGATGCTAGACTTTGTCCTGC 58.022 47.619 0.00 0.00 32.18 4.85
2905 5832 3.441572 GCCATGTTGATGCTAGACTTTGT 59.558 43.478 0.00 0.00 0.00 2.83
2952 5879 3.564053 AATAGGATTTTTACCCGCCGA 57.436 42.857 0.00 0.00 0.00 5.54
2996 5923 7.168022 TCCATTTATAAACCCATGGATGGTA 57.832 36.000 15.22 3.51 46.65 3.25
2997 5924 6.036926 TCCATTTATAAACCCATGGATGGT 57.963 37.500 15.22 0.00 46.65 3.55
2998 5925 6.992664 TTCCATTTATAAACCCATGGATGG 57.007 37.500 15.22 15.40 43.78 3.51
2999 5926 9.850198 ATTTTTCCATTTATAAACCCATGGATG 57.150 29.630 15.22 6.05 43.78 3.51
3006 5933 8.974408 GCACGATATTTTTCCATTTATAAACCC 58.026 33.333 0.00 0.00 0.00 4.11
3028 5955 2.469516 GGCTTAACCGATGGGCACG 61.470 63.158 0.00 0.00 36.48 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.