Multiple sequence alignment - TraesCS5D01G394700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G394700 chr5D 100.000 2393 0 0 1 2393 462745423 462747815 0.000000e+00 4420.0
1 TraesCS5D01G394700 chr5D 95.591 1134 36 9 120 1243 462668875 462670004 0.000000e+00 1805.0
2 TraesCS5D01G394700 chr5D 82.556 665 33 40 1323 1920 462669990 462670638 2.120000e-140 508.0
3 TraesCS5D01G394700 chr5D 88.592 412 45 2 1981 2390 22426516 22426105 1.280000e-137 499.0
4 TraesCS5D01G394700 chr5D 82.869 251 33 7 2007 2247 367989628 367989378 1.440000e-52 217.0
5 TraesCS5D01G394700 chr5D 81.746 252 32 5 2008 2247 106690064 106689815 5.220000e-47 198.0
6 TraesCS5D01G394700 chr5D 92.623 122 7 2 1 121 462598734 462598854 8.790000e-40 174.0
7 TraesCS5D01G394700 chr5D 87.931 116 11 3 2278 2393 507372671 507372783 1.490000e-27 134.0
8 TraesCS5D01G394700 chr5A 92.139 1463 64 24 1 1434 582651975 582653415 0.000000e+00 2017.0
9 TraesCS5D01G394700 chr5A 87.329 1097 101 21 308 1389 582886567 582887640 0.000000e+00 1221.0
10 TraesCS5D01G394700 chr5A 81.737 334 33 6 1637 1943 582654596 582654928 1.100000e-63 254.0
11 TraesCS5D01G394700 chr5A 87.421 159 15 4 1483 1636 582654403 582654561 6.800000e-41 178.0
12 TraesCS5D01G394700 chrUn 93.551 1256 50 9 715 1943 67088228 67086977 0.000000e+00 1842.0
13 TraesCS5D01G394700 chrUn 93.551 1256 50 9 715 1943 307431406 307432657 0.000000e+00 1842.0
14 TraesCS5D01G394700 chrUn 85.550 1391 133 38 1 1351 343623692 343625054 0.000000e+00 1393.0
15 TraesCS5D01G394700 chrUn 85.489 1392 133 40 1 1351 343569779 343571142 0.000000e+00 1387.0
16 TraesCS5D01G394700 chrUn 86.323 1243 108 32 147 1351 199466822 199465604 0.000000e+00 1297.0
17 TraesCS5D01G394700 chrUn 89.564 642 42 12 68 685 67088866 67088226 0.000000e+00 791.0
18 TraesCS5D01G394700 chrUn 89.564 642 42 12 68 685 307430768 307431408 0.000000e+00 791.0
19 TraesCS5D01G394700 chr5B 86.891 1335 101 36 68 1351 569223529 569224840 0.000000e+00 1428.0
20 TraesCS5D01G394700 chr5B 85.863 771 61 28 1214 1943 569148462 569149225 0.000000e+00 776.0
21 TraesCS5D01G394700 chr5B 86.078 747 57 27 1214 1920 569249676 569250415 0.000000e+00 760.0
22 TraesCS5D01G394700 chr5B 89.748 556 36 11 207 757 569140113 569140652 0.000000e+00 691.0
23 TraesCS5D01G394700 chr1A 88.618 1107 86 25 844 1920 559887030 559885934 0.000000e+00 1310.0
24 TraesCS5D01G394700 chr1A 85.037 1350 90 64 646 1943 559979609 559978320 0.000000e+00 1271.0
25 TraesCS5D01G394700 chr1A 89.754 1015 60 25 650 1633 559942194 559941193 0.000000e+00 1258.0
26 TraesCS5D01G394700 chr1A 87.692 455 39 7 44 498 559954392 559953955 4.560000e-142 514.0
27 TraesCS5D01G394700 chr1A 90.588 255 17 3 1696 1943 559941177 559940923 4.930000e-87 331.0
28 TraesCS5D01G394700 chr1A 81.250 128 14 6 2 123 560044614 560044491 7.040000e-16 95.3
29 TraesCS5D01G394700 chr7D 97.337 413 10 1 1982 2393 557414015 557413603 0.000000e+00 701.0
30 TraesCS5D01G394700 chr7D 77.976 168 30 7 1982 2145 47265991 47265827 5.440000e-17 99.0
31 TraesCS5D01G394700 chr2D 87.645 259 30 2 1972 2229 2088139 2088396 1.390000e-77 300.0
32 TraesCS5D01G394700 chr2D 82.143 252 33 3 2007 2247 14399263 14399513 3.120000e-49 206.0
33 TraesCS5D01G394700 chr2D 80.228 263 38 13 1985 2240 6459095 6458840 4.060000e-43 185.0
34 TraesCS5D01G394700 chr2D 84.865 185 25 3 2002 2184 617729041 617728858 1.460000e-42 183.0
35 TraesCS5D01G394700 chr1B 86.747 249 32 1 1982 2229 51943056 51943304 2.340000e-70 276.0
36 TraesCS5D01G394700 chr2B 77.747 364 58 16 2001 2348 523224526 523224170 4.030000e-48 202.0
37 TraesCS5D01G394700 chr3D 86.624 157 15 4 2073 2229 607517179 607517029 4.090000e-38 169.0
38 TraesCS5D01G394700 chr3D 83.704 135 20 2 2260 2393 11398535 11398668 2.500000e-25 126.0
39 TraesCS5D01G394700 chr3D 88.679 53 6 0 1982 2034 607517225 607517173 5.520000e-07 65.8
40 TraesCS5D01G394700 chr3A 87.850 107 12 1 2287 2393 692344202 692344307 8.980000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G394700 chr5D 462745423 462747815 2392 False 4420.000000 4420 100.0000 1 2393 1 chr5D.!!$F2 2392
1 TraesCS5D01G394700 chr5D 462668875 462670638 1763 False 1156.500000 1805 89.0735 120 1920 2 chr5D.!!$F4 1800
2 TraesCS5D01G394700 chr5A 582886567 582887640 1073 False 1221.000000 1221 87.3290 308 1389 1 chr5A.!!$F1 1081
3 TraesCS5D01G394700 chr5A 582651975 582654928 2953 False 816.333333 2017 87.0990 1 1943 3 chr5A.!!$F2 1942
4 TraesCS5D01G394700 chrUn 343623692 343625054 1362 False 1393.000000 1393 85.5500 1 1351 1 chrUn.!!$F2 1350
5 TraesCS5D01G394700 chrUn 343569779 343571142 1363 False 1387.000000 1387 85.4890 1 1351 1 chrUn.!!$F1 1350
6 TraesCS5D01G394700 chrUn 67086977 67088866 1889 True 1316.500000 1842 91.5575 68 1943 2 chrUn.!!$R2 1875
7 TraesCS5D01G394700 chrUn 307430768 307432657 1889 False 1316.500000 1842 91.5575 68 1943 2 chrUn.!!$F3 1875
8 TraesCS5D01G394700 chrUn 199465604 199466822 1218 True 1297.000000 1297 86.3230 147 1351 1 chrUn.!!$R1 1204
9 TraesCS5D01G394700 chr5B 569223529 569224840 1311 False 1428.000000 1428 86.8910 68 1351 1 chr5B.!!$F3 1283
10 TraesCS5D01G394700 chr5B 569148462 569149225 763 False 776.000000 776 85.8630 1214 1943 1 chr5B.!!$F2 729
11 TraesCS5D01G394700 chr5B 569249676 569250415 739 False 760.000000 760 86.0780 1214 1920 1 chr5B.!!$F4 706
12 TraesCS5D01G394700 chr5B 569140113 569140652 539 False 691.000000 691 89.7480 207 757 1 chr5B.!!$F1 550
13 TraesCS5D01G394700 chr1A 559885934 559887030 1096 True 1310.000000 1310 88.6180 844 1920 1 chr1A.!!$R1 1076
14 TraesCS5D01G394700 chr1A 559978320 559979609 1289 True 1271.000000 1271 85.0370 646 1943 1 chr1A.!!$R3 1297
15 TraesCS5D01G394700 chr1A 559940923 559942194 1271 True 794.500000 1258 90.1710 650 1943 2 chr1A.!!$R5 1293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 322 0.6603 GAAGCAAGGAAACAACGGCG 60.66 55.0 4.8 4.8 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2968 0.104304 GAGGGCGAGGATAGCGAAAA 59.896 55.0 0.0 0.0 37.72 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 4.137543 GTGATTCTGACAACCTTGGTCTT 58.862 43.478 0.00 0.00 36.26 3.01
133 143 1.743321 GCTCCTCCTCATCTCCACCG 61.743 65.000 0.00 0.00 0.00 4.94
136 146 3.144120 CTCCTCATCTCCACCGCCG 62.144 68.421 0.00 0.00 0.00 6.46
205 218 3.057969 CTGATGAAGCCCAACAGTGTA 57.942 47.619 0.00 0.00 39.83 2.90
216 231 5.425539 AGCCCAACAGTGTATAGTTGACTAT 59.574 40.000 8.57 8.57 46.01 2.12
261 284 6.061441 TCCATATGTGCCATTAGTTAGGTTG 58.939 40.000 1.24 0.00 0.00 3.77
290 314 2.036346 ACATTGGCAGAAGCAAGGAAAC 59.964 45.455 0.00 0.00 44.61 2.78
297 322 0.660300 GAAGCAAGGAAACAACGGCG 60.660 55.000 4.80 4.80 0.00 6.46
329 354 4.322273 GGGATATTAAGGTGTACGTAGGGC 60.322 50.000 0.00 0.00 0.00 5.19
362 387 4.164030 TGCCTATCTTTGCCTGTGATCTAA 59.836 41.667 0.00 0.00 0.00 2.10
419 454 4.392940 ACTTGGAAGTGATCAAGGTCAAG 58.607 43.478 19.63 19.63 43.20 3.02
425 460 2.040813 AGTGATCAAGGTCAAGCCACAT 59.959 45.455 0.00 0.00 40.61 3.21
434 478 4.858850 AGGTCAAGCCACATATGATCAAA 58.141 39.130 10.38 0.00 40.61 2.69
510 554 2.240612 AAAGCGCGCGGAGATTTGAC 62.241 55.000 33.06 11.27 0.00 3.18
1314 1420 3.716195 CACCGGGCCACCTCATCA 61.716 66.667 6.32 0.00 33.28 3.07
1462 1592 3.041211 TCCTCACCACAGCTTATATGCT 58.959 45.455 7.29 7.29 45.18 3.79
1713 2854 4.406648 TCTTGCACTTGTTCTTCAGAGA 57.593 40.909 0.00 0.00 0.00 3.10
1717 2879 6.319658 TCTTGCACTTGTTCTTCAGAGATTTT 59.680 34.615 0.00 0.00 0.00 1.82
1751 2913 0.875059 GGCTTCAGTTTTCGACCTGG 59.125 55.000 6.20 0.00 0.00 4.45
1800 2968 1.660575 CGCCTTCGTCGTCTGTTGT 60.661 57.895 0.00 0.00 0.00 3.32
1922 3095 3.771577 ACTTCTCCCGTGAAGAATGTT 57.228 42.857 12.22 0.00 44.40 2.71
1923 3096 3.403038 ACTTCTCCCGTGAAGAATGTTG 58.597 45.455 12.22 0.00 44.40 3.33
1943 3117 2.304761 TGGCTAGTCACCCGAAGATTTT 59.695 45.455 0.00 0.00 0.00 1.82
1944 3118 3.244770 TGGCTAGTCACCCGAAGATTTTT 60.245 43.478 0.00 0.00 0.00 1.94
1972 3146 5.950758 TTTTTGCATGGTAATACGTGTCT 57.049 34.783 0.00 0.00 0.00 3.41
1973 3147 5.539582 TTTTGCATGGTAATACGTGTCTC 57.460 39.130 0.00 0.00 0.00 3.36
1974 3148 3.878160 TGCATGGTAATACGTGTCTCA 57.122 42.857 0.00 0.00 0.00 3.27
1975 3149 4.400529 TGCATGGTAATACGTGTCTCAT 57.599 40.909 0.00 0.00 0.00 2.90
1976 3150 4.368315 TGCATGGTAATACGTGTCTCATC 58.632 43.478 0.00 0.00 0.00 2.92
1977 3151 3.741344 GCATGGTAATACGTGTCTCATCC 59.259 47.826 0.00 0.00 0.00 3.51
1978 3152 4.739436 GCATGGTAATACGTGTCTCATCCA 60.739 45.833 0.00 0.00 0.00 3.41
1979 3153 4.649088 TGGTAATACGTGTCTCATCCAG 57.351 45.455 0.00 0.00 0.00 3.86
1980 3154 3.383505 TGGTAATACGTGTCTCATCCAGG 59.616 47.826 0.00 0.00 0.00 4.45
1981 3155 3.635373 GGTAATACGTGTCTCATCCAGGA 59.365 47.826 0.00 0.00 0.00 3.86
1982 3156 4.281182 GGTAATACGTGTCTCATCCAGGAT 59.719 45.833 0.00 0.00 0.00 3.24
1983 3157 4.592485 AATACGTGTCTCATCCAGGATC 57.408 45.455 0.00 0.00 0.00 3.36
1984 3158 1.115467 ACGTGTCTCATCCAGGATCC 58.885 55.000 2.48 2.48 0.00 3.36
1985 3159 1.114627 CGTGTCTCATCCAGGATCCA 58.885 55.000 15.82 0.00 0.00 3.41
1986 3160 1.068281 CGTGTCTCATCCAGGATCCAG 59.932 57.143 15.82 5.70 0.00 3.86
1987 3161 1.415659 GTGTCTCATCCAGGATCCAGG 59.584 57.143 17.08 17.08 0.00 4.45
1988 3162 1.291939 TGTCTCATCCAGGATCCAGGA 59.708 52.381 26.63 26.63 36.07 3.86
1989 3163 2.293118 TGTCTCATCCAGGATCCAGGAA 60.293 50.000 27.95 13.06 35.27 3.36
1990 3164 2.978278 GTCTCATCCAGGATCCAGGAAT 59.022 50.000 27.95 14.54 35.27 3.01
1991 3165 4.163427 GTCTCATCCAGGATCCAGGAATA 58.837 47.826 27.95 17.80 35.27 1.75
1992 3166 4.020662 GTCTCATCCAGGATCCAGGAATAC 60.021 50.000 27.95 18.61 35.27 1.89
1993 3167 2.899900 TCATCCAGGATCCAGGAATACG 59.100 50.000 27.95 16.80 35.27 3.06
1994 3168 2.471815 TCCAGGATCCAGGAATACGT 57.528 50.000 22.92 0.00 0.00 3.57
1995 3169 2.759355 TCCAGGATCCAGGAATACGTT 58.241 47.619 22.92 0.00 0.00 3.99
1996 3170 3.918566 TCCAGGATCCAGGAATACGTTA 58.081 45.455 22.92 0.00 0.00 3.18
1997 3171 3.895656 TCCAGGATCCAGGAATACGTTAG 59.104 47.826 22.92 0.00 0.00 2.34
1998 3172 3.641906 CCAGGATCCAGGAATACGTTAGT 59.358 47.826 18.29 0.00 0.00 2.24
1999 3173 4.101119 CCAGGATCCAGGAATACGTTAGTT 59.899 45.833 18.29 0.00 0.00 2.24
2000 3174 5.050490 CAGGATCCAGGAATACGTTAGTTG 58.950 45.833 15.82 0.00 0.00 3.16
2001 3175 4.101119 AGGATCCAGGAATACGTTAGTTGG 59.899 45.833 15.82 0.00 0.00 3.77
2002 3176 3.899052 TCCAGGAATACGTTAGTTGGG 57.101 47.619 0.00 0.00 0.00 4.12
2003 3177 3.443052 TCCAGGAATACGTTAGTTGGGA 58.557 45.455 0.00 0.00 0.00 4.37
2004 3178 3.449737 TCCAGGAATACGTTAGTTGGGAG 59.550 47.826 0.00 0.00 0.00 4.30
2005 3179 3.195661 CAGGAATACGTTAGTTGGGAGC 58.804 50.000 0.00 0.00 0.00 4.70
2006 3180 2.169978 AGGAATACGTTAGTTGGGAGCC 59.830 50.000 0.00 0.00 0.00 4.70
2007 3181 2.093341 GGAATACGTTAGTTGGGAGCCA 60.093 50.000 0.00 0.00 0.00 4.75
2008 3182 2.685850 ATACGTTAGTTGGGAGCCAC 57.314 50.000 0.00 0.00 30.78 5.01
2009 3183 0.609662 TACGTTAGTTGGGAGCCACC 59.390 55.000 0.00 0.00 30.78 4.61
2019 3193 3.791586 GAGCCACCCAGCCTCCTC 61.792 72.222 0.00 0.00 0.00 3.71
2020 3194 4.664267 AGCCACCCAGCCTCCTCA 62.664 66.667 0.00 0.00 0.00 3.86
2021 3195 4.416738 GCCACCCAGCCTCCTCAC 62.417 72.222 0.00 0.00 0.00 3.51
2022 3196 3.721706 CCACCCAGCCTCCTCACC 61.722 72.222 0.00 0.00 0.00 4.02
2023 3197 4.087892 CACCCAGCCTCCTCACCG 62.088 72.222 0.00 0.00 0.00 4.94
2026 3200 4.154347 CCAGCCTCCTCACCGCTC 62.154 72.222 0.00 0.00 0.00 5.03
2027 3201 3.073735 CAGCCTCCTCACCGCTCT 61.074 66.667 0.00 0.00 0.00 4.09
2028 3202 2.284258 AGCCTCCTCACCGCTCTT 60.284 61.111 0.00 0.00 0.00 2.85
2029 3203 2.125350 GCCTCCTCACCGCTCTTG 60.125 66.667 0.00 0.00 0.00 3.02
2030 3204 2.650116 GCCTCCTCACCGCTCTTGA 61.650 63.158 0.00 0.00 0.00 3.02
2031 3205 1.965754 GCCTCCTCACCGCTCTTGAT 61.966 60.000 0.00 0.00 0.00 2.57
2032 3206 0.539051 CCTCCTCACCGCTCTTGATT 59.461 55.000 0.00 0.00 0.00 2.57
2033 3207 1.472376 CCTCCTCACCGCTCTTGATTC 60.472 57.143 0.00 0.00 0.00 2.52
2034 3208 0.537188 TCCTCACCGCTCTTGATTCC 59.463 55.000 0.00 0.00 0.00 3.01
2035 3209 0.539051 CCTCACCGCTCTTGATTCCT 59.461 55.000 0.00 0.00 0.00 3.36
2036 3210 1.649664 CTCACCGCTCTTGATTCCTG 58.350 55.000 0.00 0.00 0.00 3.86
2037 3211 0.250234 TCACCGCTCTTGATTCCTGG 59.750 55.000 0.00 0.00 0.00 4.45
2038 3212 1.078143 ACCGCTCTTGATTCCTGGC 60.078 57.895 0.00 0.00 0.00 4.85
2039 3213 1.821332 CCGCTCTTGATTCCTGGCC 60.821 63.158 0.00 0.00 0.00 5.36
2040 3214 2.176273 CGCTCTTGATTCCTGGCCG 61.176 63.158 0.00 0.00 0.00 6.13
2041 3215 1.078143 GCTCTTGATTCCTGGCCGT 60.078 57.895 0.00 0.00 0.00 5.68
2042 3216 1.092345 GCTCTTGATTCCTGGCCGTC 61.092 60.000 0.00 0.00 0.00 4.79
2043 3217 0.807667 CTCTTGATTCCTGGCCGTCG 60.808 60.000 0.00 0.00 0.00 5.12
2044 3218 1.815421 CTTGATTCCTGGCCGTCGG 60.815 63.158 6.99 6.99 0.00 4.79
2045 3219 2.238847 CTTGATTCCTGGCCGTCGGA 62.239 60.000 17.49 0.31 0.00 4.55
2046 3220 1.622607 TTGATTCCTGGCCGTCGGAT 61.623 55.000 17.49 0.00 0.00 4.18
2047 3221 1.595382 GATTCCTGGCCGTCGGATG 60.595 63.158 17.49 3.45 0.00 3.51
2048 3222 2.311688 GATTCCTGGCCGTCGGATGT 62.312 60.000 17.49 2.26 0.00 3.06
2049 3223 2.593468 ATTCCTGGCCGTCGGATGTG 62.593 60.000 17.49 0.00 0.00 3.21
2050 3224 4.082523 CCTGGCCGTCGGATGTGT 62.083 66.667 17.49 0.00 0.00 3.72
2051 3225 2.047274 CTGGCCGTCGGATGTGTT 60.047 61.111 17.49 0.00 0.00 3.32
2052 3226 1.671054 CTGGCCGTCGGATGTGTTT 60.671 57.895 17.49 0.00 0.00 2.83
2053 3227 1.635663 CTGGCCGTCGGATGTGTTTC 61.636 60.000 17.49 0.00 0.00 2.78
2054 3228 1.375523 GGCCGTCGGATGTGTTTCT 60.376 57.895 17.49 0.00 0.00 2.52
2055 3229 1.635663 GGCCGTCGGATGTGTTTCTG 61.636 60.000 17.49 0.00 0.00 3.02
2056 3230 0.669318 GCCGTCGGATGTGTTTCTGA 60.669 55.000 17.49 0.00 0.00 3.27
2057 3231 2.007049 GCCGTCGGATGTGTTTCTGAT 61.007 52.381 17.49 0.00 33.71 2.90
2058 3232 1.660607 CCGTCGGATGTGTTTCTGATG 59.339 52.381 4.91 0.00 37.64 3.07
2059 3233 1.061131 CGTCGGATGTGTTTCTGATGC 59.939 52.381 0.00 0.00 33.71 3.91
2060 3234 1.061131 GTCGGATGTGTTTCTGATGCG 59.939 52.381 0.00 0.00 33.71 4.73
2061 3235 1.078709 CGGATGTGTTTCTGATGCGT 58.921 50.000 0.00 0.00 0.00 5.24
2062 3236 1.464608 CGGATGTGTTTCTGATGCGTT 59.535 47.619 0.00 0.00 0.00 4.84
2063 3237 2.474526 CGGATGTGTTTCTGATGCGTTC 60.475 50.000 0.00 0.00 0.00 3.95
2064 3238 2.744202 GGATGTGTTTCTGATGCGTTCT 59.256 45.455 0.00 0.00 0.00 3.01
2065 3239 3.189287 GGATGTGTTTCTGATGCGTTCTT 59.811 43.478 0.00 0.00 0.00 2.52
2066 3240 3.607422 TGTGTTTCTGATGCGTTCTTG 57.393 42.857 0.00 0.00 0.00 3.02
2067 3241 3.202097 TGTGTTTCTGATGCGTTCTTGA 58.798 40.909 0.00 0.00 0.00 3.02
2068 3242 3.002246 TGTGTTTCTGATGCGTTCTTGAC 59.998 43.478 0.00 0.00 0.00 3.18
2069 3243 2.548057 TGTTTCTGATGCGTTCTTGACC 59.452 45.455 0.00 0.00 0.00 4.02
2070 3244 1.428448 TTCTGATGCGTTCTTGACCG 58.572 50.000 0.00 0.00 0.00 4.79
2071 3245 0.317160 TCTGATGCGTTCTTGACCGT 59.683 50.000 0.00 0.00 0.00 4.83
2072 3246 0.439985 CTGATGCGTTCTTGACCGTG 59.560 55.000 0.00 0.00 0.00 4.94
2073 3247 0.249699 TGATGCGTTCTTGACCGTGT 60.250 50.000 0.00 0.00 0.00 4.49
2074 3248 0.163788 GATGCGTTCTTGACCGTGTG 59.836 55.000 0.00 0.00 0.00 3.82
2075 3249 0.249699 ATGCGTTCTTGACCGTGTGA 60.250 50.000 0.00 0.00 0.00 3.58
2076 3250 0.249699 TGCGTTCTTGACCGTGTGAT 60.250 50.000 0.00 0.00 0.00 3.06
2077 3251 0.438830 GCGTTCTTGACCGTGTGATC 59.561 55.000 0.00 0.00 0.00 2.92
2078 3252 1.935300 GCGTTCTTGACCGTGTGATCT 60.935 52.381 0.00 0.00 0.00 2.75
2079 3253 1.986378 CGTTCTTGACCGTGTGATCTC 59.014 52.381 0.00 0.00 0.00 2.75
2080 3254 1.986378 GTTCTTGACCGTGTGATCTCG 59.014 52.381 0.00 0.00 0.00 4.04
2081 3255 0.109272 TCTTGACCGTGTGATCTCGC 60.109 55.000 0.00 0.00 0.00 5.03
2082 3256 0.109086 CTTGACCGTGTGATCTCGCT 60.109 55.000 6.75 0.00 0.00 4.93
2083 3257 0.109272 TTGACCGTGTGATCTCGCTC 60.109 55.000 6.75 0.00 0.00 5.03
2084 3258 1.583967 GACCGTGTGATCTCGCTCG 60.584 63.158 6.75 7.92 41.30 5.03
2086 3260 2.278206 CGTGTGATCTCGCTCGGG 60.278 66.667 6.75 0.00 38.98 5.14
2087 3261 2.761195 CGTGTGATCTCGCTCGGGA 61.761 63.158 6.75 0.00 38.98 5.14
2088 3262 1.064946 GTGTGATCTCGCTCGGGAG 59.935 63.158 4.76 4.76 35.32 4.30
2089 3263 1.077716 TGTGATCTCGCTCGGGAGA 60.078 57.895 14.79 14.79 46.37 3.71
2099 3273 2.123251 TCGGGAGAGATCTGGGCC 60.123 66.667 0.00 0.00 0.00 5.80
2100 3274 2.444706 CGGGAGAGATCTGGGCCA 60.445 66.667 5.85 5.85 0.00 5.36
2101 3275 1.840650 CGGGAGAGATCTGGGCCAT 60.841 63.158 6.72 0.00 0.00 4.40
2102 3276 1.414061 CGGGAGAGATCTGGGCCATT 61.414 60.000 6.72 0.00 0.00 3.16
2103 3277 0.110104 GGGAGAGATCTGGGCCATTG 59.890 60.000 6.72 0.00 0.00 2.82
2104 3278 0.110104 GGAGAGATCTGGGCCATTGG 59.890 60.000 6.72 0.00 0.00 3.16
2105 3279 1.135094 GAGAGATCTGGGCCATTGGA 58.865 55.000 6.72 0.28 0.00 3.53
2106 3280 1.704070 GAGAGATCTGGGCCATTGGAT 59.296 52.381 6.72 6.57 0.00 3.41
2107 3281 1.704070 AGAGATCTGGGCCATTGGATC 59.296 52.381 20.88 20.88 35.98 3.36
2108 3282 1.422781 GAGATCTGGGCCATTGGATCA 59.577 52.381 26.77 2.60 37.59 2.92
2109 3283 1.854939 AGATCTGGGCCATTGGATCAA 59.145 47.619 26.77 0.00 37.59 2.57
2110 3284 2.158505 AGATCTGGGCCATTGGATCAAG 60.159 50.000 26.77 7.08 37.59 3.02
2111 3285 0.396139 TCTGGGCCATTGGATCAAGC 60.396 55.000 6.72 0.00 0.00 4.01
2112 3286 1.381599 TGGGCCATTGGATCAAGCC 60.382 57.895 0.00 0.00 43.09 4.35
2113 3287 1.381599 GGGCCATTGGATCAAGCCA 60.382 57.895 6.95 0.00 45.72 4.75
2114 3288 1.397390 GGGCCATTGGATCAAGCCAG 61.397 60.000 6.95 0.00 45.72 4.85
2115 3289 0.396139 GGCCATTGGATCAAGCCAGA 60.396 55.000 6.95 0.00 43.32 3.86
2116 3290 1.700955 GCCATTGGATCAAGCCAGAT 58.299 50.000 6.95 0.00 39.52 2.90
2117 3291 1.612463 GCCATTGGATCAAGCCAGATC 59.388 52.381 6.95 7.31 42.89 2.75
2118 3292 2.940158 CCATTGGATCAAGCCAGATCA 58.060 47.619 15.43 0.00 44.89 2.92
2119 3293 2.621998 CCATTGGATCAAGCCAGATCAC 59.378 50.000 15.43 7.54 44.89 3.06
2120 3294 3.552875 CATTGGATCAAGCCAGATCACT 58.447 45.455 15.43 0.30 44.89 3.41
2121 3295 2.704464 TGGATCAAGCCAGATCACTG 57.296 50.000 15.43 0.00 44.89 3.66
2122 3296 1.307097 GGATCAAGCCAGATCACTGC 58.693 55.000 15.43 0.00 44.89 4.40
2123 3297 1.134159 GGATCAAGCCAGATCACTGCT 60.134 52.381 15.43 0.00 44.89 4.24
2124 3298 2.103771 GGATCAAGCCAGATCACTGCTA 59.896 50.000 15.43 0.00 44.89 3.49
2125 3299 2.680312 TCAAGCCAGATCACTGCTAC 57.320 50.000 4.37 0.00 42.25 3.58
2126 3300 1.901833 TCAAGCCAGATCACTGCTACA 59.098 47.619 4.37 0.00 42.25 2.74
2127 3301 2.302733 TCAAGCCAGATCACTGCTACAA 59.697 45.455 4.37 0.00 42.25 2.41
2128 3302 3.054875 TCAAGCCAGATCACTGCTACAAT 60.055 43.478 4.37 0.00 42.25 2.71
2129 3303 2.915349 AGCCAGATCACTGCTACAATG 58.085 47.619 0.00 0.00 42.25 2.82
2130 3304 2.502947 AGCCAGATCACTGCTACAATGA 59.497 45.455 0.00 0.00 42.25 2.57
2131 3305 3.054875 AGCCAGATCACTGCTACAATGAA 60.055 43.478 0.00 0.00 42.25 2.57
2132 3306 3.881688 GCCAGATCACTGCTACAATGAAT 59.118 43.478 0.00 0.00 42.25 2.57
2133 3307 5.059161 GCCAGATCACTGCTACAATGAATA 58.941 41.667 0.00 0.00 42.25 1.75
2134 3308 5.178996 GCCAGATCACTGCTACAATGAATAG 59.821 44.000 0.00 0.00 42.25 1.73
2135 3309 6.286758 CCAGATCACTGCTACAATGAATAGT 58.713 40.000 0.00 0.00 42.25 2.12
2136 3310 7.436933 CCAGATCACTGCTACAATGAATAGTA 58.563 38.462 0.00 0.00 42.25 1.82
2137 3311 7.598118 CCAGATCACTGCTACAATGAATAGTAG 59.402 40.741 0.00 0.00 42.25 2.57
2145 3319 6.936222 CTACAATGAATAGTAGCGTCCATC 57.064 41.667 0.00 0.00 32.25 3.51
2146 3320 5.537300 ACAATGAATAGTAGCGTCCATCT 57.463 39.130 0.00 0.00 0.00 2.90
2147 3321 6.650427 ACAATGAATAGTAGCGTCCATCTA 57.350 37.500 0.00 0.00 0.00 1.98
2148 3322 6.682746 ACAATGAATAGTAGCGTCCATCTAG 58.317 40.000 0.00 0.00 0.00 2.43
2149 3323 6.265649 ACAATGAATAGTAGCGTCCATCTAGT 59.734 38.462 0.00 0.00 0.00 2.57
2150 3324 6.902771 ATGAATAGTAGCGTCCATCTAGTT 57.097 37.500 0.00 0.00 0.00 2.24
2151 3325 6.710597 TGAATAGTAGCGTCCATCTAGTTT 57.289 37.500 0.00 0.00 0.00 2.66
2152 3326 7.108841 TGAATAGTAGCGTCCATCTAGTTTT 57.891 36.000 0.00 0.00 0.00 2.43
2153 3327 7.553334 TGAATAGTAGCGTCCATCTAGTTTTT 58.447 34.615 0.00 0.00 0.00 1.94
2154 3328 7.705325 TGAATAGTAGCGTCCATCTAGTTTTTC 59.295 37.037 0.00 0.00 0.00 2.29
2155 3329 5.662674 AGTAGCGTCCATCTAGTTTTTCT 57.337 39.130 0.00 0.00 0.00 2.52
2156 3330 6.038997 AGTAGCGTCCATCTAGTTTTTCTT 57.961 37.500 0.00 0.00 0.00 2.52
2157 3331 7.166691 AGTAGCGTCCATCTAGTTTTTCTTA 57.833 36.000 0.00 0.00 0.00 2.10
2158 3332 7.034397 AGTAGCGTCCATCTAGTTTTTCTTAC 58.966 38.462 0.00 0.00 0.00 2.34
2159 3333 6.038997 AGCGTCCATCTAGTTTTTCTTACT 57.961 37.500 0.00 0.00 0.00 2.24
2160 3334 5.869888 AGCGTCCATCTAGTTTTTCTTACTG 59.130 40.000 0.00 0.00 0.00 2.74
2161 3335 5.063564 GCGTCCATCTAGTTTTTCTTACTGG 59.936 44.000 0.00 0.00 0.00 4.00
2162 3336 6.164176 CGTCCATCTAGTTTTTCTTACTGGT 58.836 40.000 0.00 0.00 0.00 4.00
2163 3337 6.649557 CGTCCATCTAGTTTTTCTTACTGGTT 59.350 38.462 0.00 0.00 0.00 3.67
2164 3338 7.172703 CGTCCATCTAGTTTTTCTTACTGGTTT 59.827 37.037 0.00 0.00 0.00 3.27
2165 3339 8.847196 GTCCATCTAGTTTTTCTTACTGGTTTT 58.153 33.333 0.00 0.00 0.00 2.43
2166 3340 8.846211 TCCATCTAGTTTTTCTTACTGGTTTTG 58.154 33.333 0.00 0.00 0.00 2.44
2167 3341 8.630037 CCATCTAGTTTTTCTTACTGGTTTTGT 58.370 33.333 0.00 0.00 0.00 2.83
2173 3347 9.850628 AGTTTTTCTTACTGGTTTTGTTTACTC 57.149 29.630 0.00 0.00 0.00 2.59
2174 3348 9.079833 GTTTTTCTTACTGGTTTTGTTTACTCC 57.920 33.333 0.00 0.00 0.00 3.85
2175 3349 7.941431 TTTCTTACTGGTTTTGTTTACTCCA 57.059 32.000 0.00 0.00 0.00 3.86
2177 3351 6.891388 TCTTACTGGTTTTGTTTACTCCAGA 58.109 36.000 15.03 0.00 45.76 3.86
2178 3352 7.340256 TCTTACTGGTTTTGTTTACTCCAGAA 58.660 34.615 15.03 5.70 45.76 3.02
2179 3353 7.996644 TCTTACTGGTTTTGTTTACTCCAGAAT 59.003 33.333 15.03 0.00 45.76 2.40
2180 3354 8.528044 TTACTGGTTTTGTTTACTCCAGAATT 57.472 30.769 15.03 0.00 45.76 2.17
2181 3355 9.629878 TTACTGGTTTTGTTTACTCCAGAATTA 57.370 29.630 15.03 0.00 45.76 1.40
2182 3356 7.937649 ACTGGTTTTGTTTACTCCAGAATTAC 58.062 34.615 15.03 0.00 45.76 1.89
2183 3357 7.778382 ACTGGTTTTGTTTACTCCAGAATTACT 59.222 33.333 15.03 0.00 45.76 2.24
2184 3358 7.936584 TGGTTTTGTTTACTCCAGAATTACTG 58.063 34.615 0.00 0.00 45.36 2.74
2185 3359 7.558444 TGGTTTTGTTTACTCCAGAATTACTGT 59.442 33.333 0.00 0.00 44.40 3.55
2186 3360 8.074370 GGTTTTGTTTACTCCAGAATTACTGTC 58.926 37.037 0.00 0.00 44.40 3.51
2187 3361 8.837389 GTTTTGTTTACTCCAGAATTACTGTCT 58.163 33.333 0.00 0.00 44.40 3.41
2188 3362 8.974060 TTTGTTTACTCCAGAATTACTGTCTT 57.026 30.769 0.00 0.00 44.40 3.01
2190 3364 9.485206 TTGTTTACTCCAGAATTACTGTCTTAC 57.515 33.333 0.00 0.00 44.40 2.34
2191 3365 8.092687 TGTTTACTCCAGAATTACTGTCTTACC 58.907 37.037 0.00 0.00 44.40 2.85
2192 3366 8.312564 GTTTACTCCAGAATTACTGTCTTACCT 58.687 37.037 0.00 0.00 44.40 3.08
2193 3367 6.532988 ACTCCAGAATTACTGTCTTACCTC 57.467 41.667 0.00 0.00 44.40 3.85
2194 3368 5.125739 ACTCCAGAATTACTGTCTTACCTCG 59.874 44.000 0.00 0.00 44.40 4.63
2195 3369 4.113354 CCAGAATTACTGTCTTACCTCGC 58.887 47.826 0.00 0.00 44.40 5.03
2196 3370 4.142138 CCAGAATTACTGTCTTACCTCGCT 60.142 45.833 0.00 0.00 44.40 4.93
2197 3371 4.800993 CAGAATTACTGTCTTACCTCGCTG 59.199 45.833 0.00 0.00 41.30 5.18
2198 3372 4.705507 AGAATTACTGTCTTACCTCGCTGA 59.294 41.667 0.00 0.00 0.00 4.26
2199 3373 3.844577 TTACTGTCTTACCTCGCTGAC 57.155 47.619 0.00 0.00 0.00 3.51
2200 3374 0.522180 ACTGTCTTACCTCGCTGACG 59.478 55.000 0.00 0.00 42.01 4.35
2201 3375 0.522180 CTGTCTTACCTCGCTGACGT 59.478 55.000 0.00 0.00 41.18 4.34
2202 3376 0.240145 TGTCTTACCTCGCTGACGTG 59.760 55.000 0.00 0.00 41.18 4.49
2203 3377 0.240411 GTCTTACCTCGCTGACGTGT 59.760 55.000 0.00 0.00 41.18 4.49
2204 3378 0.240145 TCTTACCTCGCTGACGTGTG 59.760 55.000 0.00 0.00 41.18 3.82
2205 3379 0.732880 CTTACCTCGCTGACGTGTGG 60.733 60.000 0.00 0.00 41.18 4.17
2206 3380 2.149803 TTACCTCGCTGACGTGTGGG 62.150 60.000 0.00 0.00 41.18 4.61
2207 3381 4.742201 CCTCGCTGACGTGTGGGG 62.742 72.222 0.00 0.00 41.18 4.96
2208 3382 3.991051 CTCGCTGACGTGTGGGGT 61.991 66.667 0.00 0.00 41.18 4.95
2209 3383 3.916392 CTCGCTGACGTGTGGGGTC 62.916 68.421 0.00 0.00 41.18 4.46
2211 3385 3.986006 GCTGACGTGTGGGGTCGA 61.986 66.667 0.00 0.00 37.22 4.20
2212 3386 2.970639 CTGACGTGTGGGGTCGAT 59.029 61.111 0.00 0.00 37.22 3.59
2213 3387 1.153823 CTGACGTGTGGGGTCGATC 60.154 63.158 0.00 0.00 37.22 3.69
2214 3388 2.183555 GACGTGTGGGGTCGATCC 59.816 66.667 6.02 6.02 0.00 3.36
2245 3419 2.964911 GCTGGTCAGCGACTATGTC 58.035 57.895 7.23 0.00 45.29 3.06
2246 3420 0.457851 GCTGGTCAGCGACTATGTCT 59.542 55.000 7.23 0.00 45.29 3.41
2247 3421 1.676529 GCTGGTCAGCGACTATGTCTA 59.323 52.381 7.23 0.00 45.29 2.59
2248 3422 2.541999 GCTGGTCAGCGACTATGTCTAC 60.542 54.545 7.23 0.00 45.29 2.59
2249 3423 2.683362 CTGGTCAGCGACTATGTCTACA 59.317 50.000 8.26 0.00 32.47 2.74
2250 3424 3.086282 TGGTCAGCGACTATGTCTACAA 58.914 45.455 8.26 0.00 32.47 2.41
2251 3425 3.508402 TGGTCAGCGACTATGTCTACAAA 59.492 43.478 8.26 0.00 32.47 2.83
2252 3426 4.106197 GGTCAGCGACTATGTCTACAAAG 58.894 47.826 8.26 0.00 32.47 2.77
2253 3427 4.380655 GGTCAGCGACTATGTCTACAAAGT 60.381 45.833 8.26 0.00 32.47 2.66
2254 3428 4.559251 GTCAGCGACTATGTCTACAAAGTG 59.441 45.833 0.00 0.00 0.00 3.16
2255 3429 3.859961 CAGCGACTATGTCTACAAAGTGG 59.140 47.826 0.00 0.00 0.00 4.00
2256 3430 2.603560 GCGACTATGTCTACAAAGTGGC 59.396 50.000 0.00 0.00 36.71 5.01
2257 3431 2.852413 CGACTATGTCTACAAAGTGGCG 59.148 50.000 0.00 0.00 0.00 5.69
2258 3432 3.672511 CGACTATGTCTACAAAGTGGCGT 60.673 47.826 0.00 0.00 0.00 5.68
2259 3433 3.585862 ACTATGTCTACAAAGTGGCGTG 58.414 45.455 0.00 0.00 0.00 5.34
2260 3434 2.543777 ATGTCTACAAAGTGGCGTGT 57.456 45.000 0.00 0.00 0.00 4.49
2261 3435 1.577468 TGTCTACAAAGTGGCGTGTG 58.423 50.000 0.00 0.00 0.00 3.82
2262 3436 0.234884 GTCTACAAAGTGGCGTGTGC 59.765 55.000 0.00 0.00 41.71 4.57
2263 3437 1.204062 CTACAAAGTGGCGTGTGCG 59.796 57.895 0.00 0.00 44.10 5.34
2264 3438 2.170260 CTACAAAGTGGCGTGTGCGG 62.170 60.000 0.00 0.00 44.10 5.69
2265 3439 2.926901 TACAAAGTGGCGTGTGCGGT 62.927 55.000 0.00 0.00 44.10 5.68
2266 3440 2.826738 AAAGTGGCGTGTGCGGTT 60.827 55.556 0.00 0.00 44.10 4.44
2267 3441 2.830285 AAAGTGGCGTGTGCGGTTC 61.830 57.895 0.00 0.00 44.10 3.62
2288 3462 4.430765 GGCGCCCTCGAGACGAAA 62.431 66.667 25.58 0.00 34.74 3.46
2289 3463 2.431942 GCGCCCTCGAGACGAAAA 60.432 61.111 25.58 0.00 34.74 2.29
2290 3464 2.445438 GCGCCCTCGAGACGAAAAG 61.445 63.158 25.58 4.09 34.74 2.27
2291 3465 1.211969 CGCCCTCGAGACGAAAAGA 59.788 57.895 15.71 0.00 34.74 2.52
2292 3466 0.179134 CGCCCTCGAGACGAAAAGAT 60.179 55.000 15.71 0.00 34.74 2.40
2293 3467 1.562017 GCCCTCGAGACGAAAAGATC 58.438 55.000 15.71 0.00 34.74 2.75
2294 3468 1.135333 GCCCTCGAGACGAAAAGATCT 59.865 52.381 15.71 0.00 34.74 2.75
2295 3469 2.358267 GCCCTCGAGACGAAAAGATCTA 59.642 50.000 15.71 0.00 34.74 1.98
2296 3470 3.792794 GCCCTCGAGACGAAAAGATCTAC 60.793 52.174 15.71 0.00 34.74 2.59
2297 3471 3.628487 CCCTCGAGACGAAAAGATCTACT 59.372 47.826 15.71 0.00 34.74 2.57
2298 3472 4.496673 CCCTCGAGACGAAAAGATCTACTG 60.497 50.000 15.71 0.00 34.74 2.74
2299 3473 4.017380 TCGAGACGAAAAGATCTACTGC 57.983 45.455 0.00 0.00 31.06 4.40
2300 3474 3.109619 CGAGACGAAAAGATCTACTGCC 58.890 50.000 0.00 0.00 0.00 4.85
2301 3475 3.427638 CGAGACGAAAAGATCTACTGCCA 60.428 47.826 0.00 0.00 0.00 4.92
2302 3476 3.851098 AGACGAAAAGATCTACTGCCAC 58.149 45.455 0.00 0.00 0.00 5.01
2303 3477 2.930682 GACGAAAAGATCTACTGCCACC 59.069 50.000 0.00 0.00 0.00 4.61
2304 3478 1.927174 CGAAAAGATCTACTGCCACCG 59.073 52.381 0.00 0.00 0.00 4.94
2305 3479 1.666189 GAAAAGATCTACTGCCACCGC 59.334 52.381 0.00 0.00 0.00 5.68
2306 3480 0.107654 AAAGATCTACTGCCACCGCC 60.108 55.000 0.00 0.00 0.00 6.13
2307 3481 0.978146 AAGATCTACTGCCACCGCCT 60.978 55.000 0.00 0.00 0.00 5.52
2308 3482 1.227380 GATCTACTGCCACCGCCTG 60.227 63.158 0.00 0.00 0.00 4.85
2309 3483 1.676678 GATCTACTGCCACCGCCTGA 61.677 60.000 0.00 0.00 0.00 3.86
2310 3484 1.050988 ATCTACTGCCACCGCCTGAT 61.051 55.000 0.00 0.00 0.00 2.90
2311 3485 0.396556 TCTACTGCCACCGCCTGATA 60.397 55.000 0.00 0.00 0.00 2.15
2312 3486 0.681733 CTACTGCCACCGCCTGATAT 59.318 55.000 0.00 0.00 0.00 1.63
2313 3487 1.070758 CTACTGCCACCGCCTGATATT 59.929 52.381 0.00 0.00 0.00 1.28
2314 3488 0.179045 ACTGCCACCGCCTGATATTC 60.179 55.000 0.00 0.00 0.00 1.75
2315 3489 0.886490 CTGCCACCGCCTGATATTCC 60.886 60.000 0.00 0.00 0.00 3.01
2316 3490 1.344953 TGCCACCGCCTGATATTCCT 61.345 55.000 0.00 0.00 0.00 3.36
2317 3491 0.886490 GCCACCGCCTGATATTCCTG 60.886 60.000 0.00 0.00 0.00 3.86
2318 3492 0.469917 CCACCGCCTGATATTCCTGT 59.530 55.000 0.00 0.00 0.00 4.00
2319 3493 1.586422 CACCGCCTGATATTCCTGTG 58.414 55.000 0.00 0.00 0.00 3.66
2320 3494 1.138859 CACCGCCTGATATTCCTGTGA 59.861 52.381 0.00 0.00 0.00 3.58
2321 3495 1.139058 ACCGCCTGATATTCCTGTGAC 59.861 52.381 0.00 0.00 0.00 3.67
2322 3496 1.541233 CCGCCTGATATTCCTGTGACC 60.541 57.143 0.00 0.00 0.00 4.02
2323 3497 1.138859 CGCCTGATATTCCTGTGACCA 59.861 52.381 0.00 0.00 0.00 4.02
2324 3498 2.804572 CGCCTGATATTCCTGTGACCAG 60.805 54.545 0.00 0.00 38.50 4.00
2325 3499 2.843701 CCTGATATTCCTGTGACCAGC 58.156 52.381 0.00 0.00 37.38 4.85
2326 3500 2.437281 CCTGATATTCCTGTGACCAGCT 59.563 50.000 0.00 0.00 37.38 4.24
2327 3501 3.464907 CTGATATTCCTGTGACCAGCTG 58.535 50.000 6.78 6.78 37.38 4.24
2328 3502 3.106827 TGATATTCCTGTGACCAGCTGA 58.893 45.455 17.39 0.00 37.38 4.26
2329 3503 3.133542 TGATATTCCTGTGACCAGCTGAG 59.866 47.826 17.39 8.04 37.38 3.35
2330 3504 0.617413 ATTCCTGTGACCAGCTGAGG 59.383 55.000 17.39 13.83 37.38 3.86
2331 3505 1.483595 TTCCTGTGACCAGCTGAGGG 61.484 60.000 17.39 0.00 37.38 4.30
2332 3506 2.046507 CTGTGACCAGCTGAGGGC 60.047 66.667 17.39 0.94 42.19 5.19
2333 3507 2.848679 TGTGACCAGCTGAGGGCA 60.849 61.111 17.39 4.48 46.94 5.36
2335 3509 3.499406 TGACCAGCTGAGGGCATT 58.501 55.556 17.39 0.00 43.33 3.56
2336 3510 1.769665 TGACCAGCTGAGGGCATTT 59.230 52.632 17.39 0.00 43.33 2.32
2337 3511 0.609957 TGACCAGCTGAGGGCATTTG 60.610 55.000 17.39 0.00 43.33 2.32
2338 3512 0.610232 GACCAGCTGAGGGCATTTGT 60.610 55.000 17.39 0.00 44.79 2.83
2339 3513 0.896940 ACCAGCTGAGGGCATTTGTG 60.897 55.000 17.39 0.00 44.79 3.33
2340 3514 0.609957 CCAGCTGAGGGCATTTGTGA 60.610 55.000 17.39 0.00 44.79 3.58
2341 3515 0.809385 CAGCTGAGGGCATTTGTGAG 59.191 55.000 8.42 0.00 44.79 3.51
2342 3516 0.694771 AGCTGAGGGCATTTGTGAGA 59.305 50.000 0.00 0.00 44.79 3.27
2343 3517 1.284198 AGCTGAGGGCATTTGTGAGAT 59.716 47.619 0.00 0.00 44.79 2.75
2344 3518 2.097825 GCTGAGGGCATTTGTGAGATT 58.902 47.619 0.00 0.00 41.35 2.40
2345 3519 2.494870 GCTGAGGGCATTTGTGAGATTT 59.505 45.455 0.00 0.00 41.35 2.17
2346 3520 3.428589 GCTGAGGGCATTTGTGAGATTTC 60.429 47.826 0.00 0.00 41.35 2.17
2347 3521 3.760151 CTGAGGGCATTTGTGAGATTTCA 59.240 43.478 0.00 0.00 0.00 2.69
2348 3522 7.837163 GCTGAGGGCATTTGTGAGATTTCAC 62.837 48.000 9.40 9.40 45.85 3.18
2359 3533 4.010349 GTGAGATTTCACCTAAACCTGGG 58.990 47.826 5.05 0.00 46.47 4.45
2360 3534 3.017442 GAGATTTCACCTAAACCTGGGC 58.983 50.000 0.00 0.00 0.00 5.36
2361 3535 2.100197 GATTTCACCTAAACCTGGGCC 58.900 52.381 0.00 0.00 0.00 5.80
2362 3536 0.854218 TTTCACCTAAACCTGGGCCA 59.146 50.000 5.85 5.85 0.00 5.36
2363 3537 0.854218 TTCACCTAAACCTGGGCCAA 59.146 50.000 8.04 0.00 0.00 4.52
2364 3538 0.404040 TCACCTAAACCTGGGCCAAG 59.596 55.000 8.04 3.42 0.00 3.61
2365 3539 0.112412 CACCTAAACCTGGGCCAAGT 59.888 55.000 8.04 4.29 0.00 3.16
2366 3540 0.112412 ACCTAAACCTGGGCCAAGTG 59.888 55.000 8.90 1.95 0.00 3.16
2367 3541 0.611896 CCTAAACCTGGGCCAAGTGG 60.612 60.000 8.90 8.78 38.53 4.00
2378 3552 3.658398 CCAAGTGGCTTCTCACCAT 57.342 52.632 0.00 0.00 39.95 3.55
2379 3553 1.915141 CCAAGTGGCTTCTCACCATT 58.085 50.000 0.00 0.00 39.95 3.16
2380 3554 1.542915 CCAAGTGGCTTCTCACCATTG 59.457 52.381 0.00 0.00 39.95 2.82
2381 3555 1.542915 CAAGTGGCTTCTCACCATTGG 59.457 52.381 0.00 0.00 39.95 3.16
2382 3556 0.773644 AGTGGCTTCTCACCATTGGT 59.226 50.000 1.37 1.37 39.95 3.67
2383 3557 1.145738 AGTGGCTTCTCACCATTGGTT 59.854 47.619 5.34 0.00 39.95 3.67
2384 3558 1.270550 GTGGCTTCTCACCATTGGTTG 59.729 52.381 5.34 2.38 39.95 3.77
2385 3559 0.244721 GGCTTCTCACCATTGGTTGC 59.755 55.000 5.34 5.88 31.02 4.17
2386 3560 1.251251 GCTTCTCACCATTGGTTGCT 58.749 50.000 5.34 0.00 31.02 3.91
2387 3561 1.200948 GCTTCTCACCATTGGTTGCTC 59.799 52.381 5.34 0.00 31.02 4.26
2388 3562 1.815003 CTTCTCACCATTGGTTGCTCC 59.185 52.381 5.34 0.00 31.02 4.70
2389 3563 0.038166 TCTCACCATTGGTTGCTCCC 59.962 55.000 5.34 0.00 31.02 4.30
2390 3564 0.038744 CTCACCATTGGTTGCTCCCT 59.961 55.000 5.34 0.00 31.02 4.20
2391 3565 0.038166 TCACCATTGGTTGCTCCCTC 59.962 55.000 5.34 0.00 31.02 4.30
2392 3566 0.967380 CACCATTGGTTGCTCCCTCC 60.967 60.000 5.34 0.00 31.02 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.008330 GGCCGATTCTACGATCTAGCTA 58.992 50.000 0.00 0.00 35.09 3.32
27 28 0.609151 TTGTTGGGCCGATTCTACGA 59.391 50.000 0.00 0.00 35.09 3.43
28 29 1.444836 TTTGTTGGGCCGATTCTACG 58.555 50.000 0.00 0.00 0.00 3.51
68 70 5.237344 AGAATCACGACTTCCTTTTTGTGAG 59.763 40.000 0.00 0.00 39.10 3.51
79 81 3.654414 AGGTTGTCAGAATCACGACTTC 58.346 45.455 0.00 0.00 33.18 3.01
107 109 1.617536 ATGAGGAGGAGCTTGGCCA 60.618 57.895 0.00 0.00 0.00 5.36
133 143 2.595172 TTTTTCCCACCCGACGGC 60.595 61.111 8.86 0.00 0.00 5.68
201 214 8.697846 TTGCTGTTACATAGTCAACTATACAC 57.302 34.615 2.45 1.80 37.07 2.90
205 218 7.386848 ACGTTTTGCTGTTACATAGTCAACTAT 59.613 33.333 0.00 0.00 39.61 2.12
261 284 0.032403 TTCTGCCAATGTGCAAGTGC 59.968 50.000 0.00 0.00 41.51 4.40
290 314 3.202001 CCACTATGCCCGCCGTTG 61.202 66.667 0.00 0.00 0.00 4.10
297 322 4.042934 ACACCTTAATATCCCACTATGCCC 59.957 45.833 0.00 0.00 0.00 5.36
329 354 0.107312 AAGATAGGCAGCAGCTGGTG 60.107 55.000 35.68 35.68 45.58 4.17
338 363 2.408271 TCACAGGCAAAGATAGGCAG 57.592 50.000 0.00 0.00 0.00 4.85
362 387 1.415659 CGGAGGAATTCATCTCTGCCT 59.584 52.381 18.71 0.00 30.79 4.75
434 478 9.908152 TTTCGTGACTTCGATGATACATATAAT 57.092 29.630 5.16 0.00 39.57 1.28
510 554 6.966534 ATTTAATTTGCCTGAGGACTATGG 57.033 37.500 0.65 0.00 0.00 2.74
1018 1114 4.626081 GCAGCTCACCACCACCGT 62.626 66.667 0.00 0.00 0.00 4.83
1681 2821 2.743664 CAAGTGCAAGATCATTCCGACA 59.256 45.455 0.00 0.00 0.00 4.35
1685 2825 5.048504 TGAAGAACAAGTGCAAGATCATTCC 60.049 40.000 0.00 0.00 0.00 3.01
1717 2879 2.010582 AAGCCGGTGCGCAAAGAAAA 62.011 50.000 14.00 0.00 44.33 2.29
1751 2913 2.762234 ATGGCCTCGTCTCGTCGAC 61.762 63.158 5.18 5.18 39.33 4.20
1800 2968 0.104304 GAGGGCGAGGATAGCGAAAA 59.896 55.000 0.00 0.00 37.72 2.29
1901 3074 4.562757 CCAACATTCTTCACGGGAGAAGTA 60.563 45.833 12.28 5.67 44.18 2.24
1914 3087 2.615493 CGGGTGACTAGCCAACATTCTT 60.615 50.000 0.00 0.00 44.86 2.52
1922 3095 1.568504 AATCTTCGGGTGACTAGCCA 58.431 50.000 0.00 0.00 44.86 4.75
1923 3096 2.693267 AAATCTTCGGGTGACTAGCC 57.307 50.000 0.00 0.00 41.13 3.93
1950 3124 5.470437 TGAGACACGTATTACCATGCAAAAA 59.530 36.000 0.00 0.00 0.00 1.94
1951 3125 4.998033 TGAGACACGTATTACCATGCAAAA 59.002 37.500 0.00 0.00 0.00 2.44
1952 3126 4.570930 TGAGACACGTATTACCATGCAAA 58.429 39.130 0.00 0.00 0.00 3.68
1953 3127 4.195225 TGAGACACGTATTACCATGCAA 57.805 40.909 0.00 0.00 0.00 4.08
1954 3128 3.878160 TGAGACACGTATTACCATGCA 57.122 42.857 0.00 0.00 0.00 3.96
1955 3129 3.741344 GGATGAGACACGTATTACCATGC 59.259 47.826 0.00 0.00 0.00 4.06
1956 3130 4.944048 TGGATGAGACACGTATTACCATG 58.056 43.478 0.00 0.00 0.00 3.66
1957 3131 4.039245 CCTGGATGAGACACGTATTACCAT 59.961 45.833 0.00 0.00 0.00 3.55
1958 3132 3.383505 CCTGGATGAGACACGTATTACCA 59.616 47.826 0.00 0.00 0.00 3.25
1959 3133 3.635373 TCCTGGATGAGACACGTATTACC 59.365 47.826 0.00 0.00 0.00 2.85
1960 3134 4.913335 TCCTGGATGAGACACGTATTAC 57.087 45.455 0.00 0.00 0.00 1.89
1961 3135 4.523173 GGATCCTGGATGAGACACGTATTA 59.477 45.833 15.25 0.00 0.00 0.98
1962 3136 3.322254 GGATCCTGGATGAGACACGTATT 59.678 47.826 15.25 0.00 0.00 1.89
1963 3137 2.894126 GGATCCTGGATGAGACACGTAT 59.106 50.000 15.25 0.00 0.00 3.06
1964 3138 2.307768 GGATCCTGGATGAGACACGTA 58.692 52.381 15.25 0.00 0.00 3.57
1965 3139 1.115467 GGATCCTGGATGAGACACGT 58.885 55.000 15.25 0.00 0.00 4.49
1966 3140 1.068281 CTGGATCCTGGATGAGACACG 59.932 57.143 15.25 0.00 0.00 4.49
1967 3141 1.415659 CCTGGATCCTGGATGAGACAC 59.584 57.143 29.22 0.00 37.23 3.67
1968 3142 1.291939 TCCTGGATCCTGGATGAGACA 59.708 52.381 30.97 11.82 38.79 3.41
1969 3143 2.094100 TCCTGGATCCTGGATGAGAC 57.906 55.000 30.97 0.00 38.79 3.36
1970 3144 2.875102 TTCCTGGATCCTGGATGAGA 57.125 50.000 33.79 20.26 42.31 3.27
1971 3145 3.056250 CGTATTCCTGGATCCTGGATGAG 60.056 52.174 33.79 22.80 42.31 2.90
1972 3146 2.899900 CGTATTCCTGGATCCTGGATGA 59.100 50.000 33.79 23.46 42.31 2.92
1973 3147 2.634940 ACGTATTCCTGGATCCTGGATG 59.365 50.000 33.79 25.56 42.31 3.51
1974 3148 2.977808 ACGTATTCCTGGATCCTGGAT 58.022 47.619 33.79 25.55 42.31 3.41
1975 3149 2.471815 ACGTATTCCTGGATCCTGGA 57.528 50.000 30.97 30.97 41.33 3.86
1976 3150 3.641906 ACTAACGTATTCCTGGATCCTGG 59.358 47.826 27.66 27.66 36.53 4.45
1977 3151 4.939052 ACTAACGTATTCCTGGATCCTG 57.061 45.455 14.23 12.81 0.00 3.86
1978 3152 4.101119 CCAACTAACGTATTCCTGGATCCT 59.899 45.833 14.23 0.00 0.00 3.24
1979 3153 4.377897 CCAACTAACGTATTCCTGGATCC 58.622 47.826 4.20 4.20 0.00 3.36
1980 3154 4.100498 TCCCAACTAACGTATTCCTGGATC 59.900 45.833 0.00 0.00 0.00 3.36
1981 3155 4.035112 TCCCAACTAACGTATTCCTGGAT 58.965 43.478 0.00 0.00 0.00 3.41
1982 3156 3.443052 TCCCAACTAACGTATTCCTGGA 58.557 45.455 0.00 0.00 0.00 3.86
1983 3157 3.793559 CTCCCAACTAACGTATTCCTGG 58.206 50.000 0.00 0.00 0.00 4.45
1984 3158 3.195661 GCTCCCAACTAACGTATTCCTG 58.804 50.000 0.00 0.00 0.00 3.86
1985 3159 2.169978 GGCTCCCAACTAACGTATTCCT 59.830 50.000 0.00 0.00 0.00 3.36
1986 3160 2.093341 TGGCTCCCAACTAACGTATTCC 60.093 50.000 0.00 0.00 0.00 3.01
1987 3161 2.934553 GTGGCTCCCAACTAACGTATTC 59.065 50.000 0.00 0.00 34.18 1.75
1988 3162 2.355412 GGTGGCTCCCAACTAACGTATT 60.355 50.000 0.00 0.00 38.38 1.89
1989 3163 1.208776 GGTGGCTCCCAACTAACGTAT 59.791 52.381 0.00 0.00 38.38 3.06
1990 3164 0.609662 GGTGGCTCCCAACTAACGTA 59.390 55.000 0.00 0.00 38.38 3.57
1991 3165 1.373812 GGTGGCTCCCAACTAACGT 59.626 57.895 0.00 0.00 38.38 3.99
1992 3166 4.296265 GGTGGCTCCCAACTAACG 57.704 61.111 0.00 0.00 38.38 3.18
2004 3178 4.416738 GTGAGGAGGCTGGGTGGC 62.417 72.222 0.00 0.00 42.15 5.01
2005 3179 3.721706 GGTGAGGAGGCTGGGTGG 61.722 72.222 0.00 0.00 0.00 4.61
2006 3180 4.087892 CGGTGAGGAGGCTGGGTG 62.088 72.222 0.00 0.00 0.00 4.61
2009 3183 4.154347 GAGCGGTGAGGAGGCTGG 62.154 72.222 0.00 0.00 37.10 4.85
2010 3184 2.654079 AAGAGCGGTGAGGAGGCTG 61.654 63.158 0.00 0.00 37.10 4.85
2011 3185 2.284258 AAGAGCGGTGAGGAGGCT 60.284 61.111 0.00 0.00 40.29 4.58
2012 3186 1.965754 ATCAAGAGCGGTGAGGAGGC 61.966 60.000 0.00 0.00 0.00 4.70
2013 3187 0.539051 AATCAAGAGCGGTGAGGAGG 59.461 55.000 0.00 0.00 0.00 4.30
2014 3188 1.472376 GGAATCAAGAGCGGTGAGGAG 60.472 57.143 0.00 0.00 0.00 3.69
2015 3189 0.537188 GGAATCAAGAGCGGTGAGGA 59.463 55.000 0.00 0.00 0.00 3.71
2016 3190 0.539051 AGGAATCAAGAGCGGTGAGG 59.461 55.000 0.00 0.00 0.00 3.86
2017 3191 1.649664 CAGGAATCAAGAGCGGTGAG 58.350 55.000 0.00 0.00 0.00 3.51
2018 3192 0.250234 CCAGGAATCAAGAGCGGTGA 59.750 55.000 0.00 0.00 0.00 4.02
2019 3193 1.372087 GCCAGGAATCAAGAGCGGTG 61.372 60.000 0.00 0.00 0.00 4.94
2020 3194 1.078143 GCCAGGAATCAAGAGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
2021 3195 1.821332 GGCCAGGAATCAAGAGCGG 60.821 63.158 0.00 0.00 0.00 5.52
2022 3196 2.176273 CGGCCAGGAATCAAGAGCG 61.176 63.158 2.24 0.00 0.00 5.03
2023 3197 1.078143 ACGGCCAGGAATCAAGAGC 60.078 57.895 2.24 0.00 0.00 4.09
2024 3198 0.807667 CGACGGCCAGGAATCAAGAG 60.808 60.000 2.24 0.00 0.00 2.85
2025 3199 1.218047 CGACGGCCAGGAATCAAGA 59.782 57.895 2.24 0.00 0.00 3.02
2026 3200 1.815421 CCGACGGCCAGGAATCAAG 60.815 63.158 2.24 0.00 0.00 3.02
2027 3201 1.622607 ATCCGACGGCCAGGAATCAA 61.623 55.000 9.66 0.00 40.32 2.57
2028 3202 2.063979 ATCCGACGGCCAGGAATCA 61.064 57.895 9.66 0.00 40.32 2.57
2029 3203 1.595382 CATCCGACGGCCAGGAATC 60.595 63.158 9.66 0.00 40.32 2.52
2030 3204 2.367202 ACATCCGACGGCCAGGAAT 61.367 57.895 9.66 4.82 40.32 3.01
2031 3205 3.000819 ACATCCGACGGCCAGGAA 61.001 61.111 9.66 0.00 40.32 3.36
2032 3206 3.770040 CACATCCGACGGCCAGGA 61.770 66.667 9.66 13.18 41.30 3.86
2033 3207 3.605749 AACACATCCGACGGCCAGG 62.606 63.158 9.66 2.49 0.00 4.45
2034 3208 1.635663 GAAACACATCCGACGGCCAG 61.636 60.000 9.66 3.66 0.00 4.85
2035 3209 1.669760 GAAACACATCCGACGGCCA 60.670 57.895 9.66 0.00 0.00 5.36
2036 3210 1.375523 AGAAACACATCCGACGGCC 60.376 57.895 9.66 0.00 0.00 6.13
2037 3211 0.669318 TCAGAAACACATCCGACGGC 60.669 55.000 9.66 0.00 0.00 5.68
2038 3212 1.660607 CATCAGAAACACATCCGACGG 59.339 52.381 7.84 7.84 0.00 4.79
2039 3213 1.061131 GCATCAGAAACACATCCGACG 59.939 52.381 0.00 0.00 0.00 5.12
2040 3214 1.061131 CGCATCAGAAACACATCCGAC 59.939 52.381 0.00 0.00 0.00 4.79
2041 3215 1.337728 ACGCATCAGAAACACATCCGA 60.338 47.619 0.00 0.00 0.00 4.55
2042 3216 1.078709 ACGCATCAGAAACACATCCG 58.921 50.000 0.00 0.00 0.00 4.18
2043 3217 2.744202 AGAACGCATCAGAAACACATCC 59.256 45.455 0.00 0.00 0.00 3.51
2044 3218 4.083855 TCAAGAACGCATCAGAAACACATC 60.084 41.667 0.00 0.00 0.00 3.06
2045 3219 3.814842 TCAAGAACGCATCAGAAACACAT 59.185 39.130 0.00 0.00 0.00 3.21
2046 3220 3.002246 GTCAAGAACGCATCAGAAACACA 59.998 43.478 0.00 0.00 0.00 3.72
2047 3221 3.545633 GTCAAGAACGCATCAGAAACAC 58.454 45.455 0.00 0.00 0.00 3.32
2048 3222 2.548057 GGTCAAGAACGCATCAGAAACA 59.452 45.455 0.00 0.00 0.00 2.83
2049 3223 2.411547 CGGTCAAGAACGCATCAGAAAC 60.412 50.000 0.00 0.00 33.50 2.78
2050 3224 1.798223 CGGTCAAGAACGCATCAGAAA 59.202 47.619 0.00 0.00 33.50 2.52
2051 3225 1.428448 CGGTCAAGAACGCATCAGAA 58.572 50.000 0.00 0.00 33.50 3.02
2052 3226 3.122150 CGGTCAAGAACGCATCAGA 57.878 52.632 0.00 0.00 33.50 3.27
2060 3234 1.986378 CGAGATCACACGGTCAAGAAC 59.014 52.381 0.00 0.00 0.00 3.01
2061 3235 1.668919 GCGAGATCACACGGTCAAGAA 60.669 52.381 0.00 0.00 0.00 2.52
2062 3236 0.109272 GCGAGATCACACGGTCAAGA 60.109 55.000 0.00 0.00 0.00 3.02
2063 3237 0.109086 AGCGAGATCACACGGTCAAG 60.109 55.000 0.00 0.00 36.26 3.02
2064 3238 1.964448 AGCGAGATCACACGGTCAA 59.036 52.632 0.00 0.00 36.26 3.18
2065 3239 3.681473 AGCGAGATCACACGGTCA 58.319 55.556 0.00 0.00 36.26 4.02
2066 3240 4.386245 GAGCGAGATCACACGGTC 57.614 61.111 17.73 17.73 45.78 4.79
2067 3241 2.485582 CGAGCGAGATCACACGGT 59.514 61.111 10.36 10.36 42.49 4.83
2068 3242 2.278206 CCGAGCGAGATCACACGG 60.278 66.667 0.00 0.02 34.77 4.94
2069 3243 2.278206 CCCGAGCGAGATCACACG 60.278 66.667 0.00 0.00 0.00 4.49
2070 3244 1.064946 CTCCCGAGCGAGATCACAC 59.935 63.158 0.00 0.00 30.97 3.82
2071 3245 1.077716 TCTCCCGAGCGAGATCACA 60.078 57.895 0.00 0.00 33.91 3.58
2072 3246 0.816018 TCTCTCCCGAGCGAGATCAC 60.816 60.000 0.00 0.00 38.22 3.06
2073 3247 0.109532 ATCTCTCCCGAGCGAGATCA 59.890 55.000 0.00 0.00 41.81 2.92
2074 3248 2.941210 ATCTCTCCCGAGCGAGATC 58.059 57.895 0.00 0.00 41.81 2.75
2075 3249 0.400213 AGATCTCTCCCGAGCGAGAT 59.600 55.000 0.00 0.00 46.60 2.75
2076 3250 0.533978 CAGATCTCTCCCGAGCGAGA 60.534 60.000 0.00 0.00 40.26 4.04
2077 3251 1.514678 CCAGATCTCTCCCGAGCGAG 61.515 65.000 0.00 0.00 37.19 5.03
2078 3252 1.527148 CCAGATCTCTCCCGAGCGA 60.527 63.158 0.00 0.00 37.19 4.93
2079 3253 2.560119 CCCAGATCTCTCCCGAGCG 61.560 68.421 0.00 0.00 37.19 5.03
2080 3254 2.866726 GCCCAGATCTCTCCCGAGC 61.867 68.421 0.00 0.00 37.19 5.03
2081 3255 2.206536 GGCCCAGATCTCTCCCGAG 61.207 68.421 0.00 0.00 38.67 4.63
2082 3256 2.123251 GGCCCAGATCTCTCCCGA 60.123 66.667 0.00 0.00 0.00 5.14
2083 3257 1.414061 AATGGCCCAGATCTCTCCCG 61.414 60.000 0.00 0.00 0.00 5.14
2084 3258 0.110104 CAATGGCCCAGATCTCTCCC 59.890 60.000 0.00 0.00 0.00 4.30
2085 3259 0.110104 CCAATGGCCCAGATCTCTCC 59.890 60.000 0.00 0.00 0.00 3.71
2086 3260 1.135094 TCCAATGGCCCAGATCTCTC 58.865 55.000 0.00 0.00 0.00 3.20
2087 3261 1.704070 GATCCAATGGCCCAGATCTCT 59.296 52.381 0.00 0.00 33.79 3.10
2088 3262 1.422781 TGATCCAATGGCCCAGATCTC 59.577 52.381 17.30 3.58 36.82 2.75
2089 3263 1.526315 TGATCCAATGGCCCAGATCT 58.474 50.000 17.30 0.00 36.82 2.75
2090 3264 2.236766 CTTGATCCAATGGCCCAGATC 58.763 52.381 0.00 7.36 36.49 2.75
2091 3265 1.756690 GCTTGATCCAATGGCCCAGAT 60.757 52.381 0.00 0.00 0.00 2.90
2092 3266 0.396139 GCTTGATCCAATGGCCCAGA 60.396 55.000 0.00 0.00 0.00 3.86
2093 3267 1.397390 GGCTTGATCCAATGGCCCAG 61.397 60.000 0.00 0.00 37.12 4.45
2094 3268 1.381599 GGCTTGATCCAATGGCCCA 60.382 57.895 0.00 0.00 37.12 5.36
2095 3269 1.381599 TGGCTTGATCCAATGGCCC 60.382 57.895 0.00 0.00 41.84 5.80
2096 3270 0.396139 TCTGGCTTGATCCAATGGCC 60.396 55.000 0.00 0.00 42.73 5.36
2097 3271 1.612463 GATCTGGCTTGATCCAATGGC 59.388 52.381 0.00 0.00 37.47 4.40
2098 3272 2.621998 GTGATCTGGCTTGATCCAATGG 59.378 50.000 14.90 0.00 41.42 3.16
2099 3273 3.315470 CAGTGATCTGGCTTGATCCAATG 59.685 47.826 14.90 10.27 41.42 2.82
2100 3274 3.552875 CAGTGATCTGGCTTGATCCAAT 58.447 45.455 14.90 4.29 41.42 3.16
2101 3275 2.942752 GCAGTGATCTGGCTTGATCCAA 60.943 50.000 14.90 0.00 41.42 3.53
2102 3276 1.407851 GCAGTGATCTGGCTTGATCCA 60.408 52.381 14.90 0.00 41.42 3.41
2103 3277 1.134159 AGCAGTGATCTGGCTTGATCC 60.134 52.381 14.90 8.82 41.42 3.36
2104 3278 2.328819 AGCAGTGATCTGGCTTGATC 57.671 50.000 12.03 12.03 41.57 2.92
2105 3279 2.502947 TGTAGCAGTGATCTGGCTTGAT 59.497 45.455 10.72 0.00 41.57 2.57
2106 3280 1.901833 TGTAGCAGTGATCTGGCTTGA 59.098 47.619 10.72 0.00 41.57 3.02
2107 3281 2.391616 TGTAGCAGTGATCTGGCTTG 57.608 50.000 10.72 0.00 41.57 4.01
2108 3282 3.054875 TCATTGTAGCAGTGATCTGGCTT 60.055 43.478 10.72 0.00 41.57 4.35
2109 3283 2.502947 TCATTGTAGCAGTGATCTGGCT 59.497 45.455 10.38 10.38 41.57 4.75
2110 3284 2.910199 TCATTGTAGCAGTGATCTGGC 58.090 47.619 0.00 0.00 41.57 4.85
2111 3285 6.286758 ACTATTCATTGTAGCAGTGATCTGG 58.713 40.000 0.00 0.00 41.57 3.86
2112 3286 8.518151 CTACTATTCATTGTAGCAGTGATCTG 57.482 38.462 0.00 0.00 43.87 2.90
2122 3296 6.682746 AGATGGACGCTACTATTCATTGTAG 58.317 40.000 4.57 4.57 38.54 2.74
2123 3297 6.650427 AGATGGACGCTACTATTCATTGTA 57.350 37.500 0.00 0.00 0.00 2.41
2124 3298 5.537300 AGATGGACGCTACTATTCATTGT 57.463 39.130 0.00 0.00 0.00 2.71
2125 3299 6.682746 ACTAGATGGACGCTACTATTCATTG 58.317 40.000 0.00 0.00 0.00 2.82
2126 3300 6.902771 ACTAGATGGACGCTACTATTCATT 57.097 37.500 0.00 0.00 0.00 2.57
2127 3301 6.902771 AACTAGATGGACGCTACTATTCAT 57.097 37.500 0.00 0.00 0.00 2.57
2128 3302 6.710597 AAACTAGATGGACGCTACTATTCA 57.289 37.500 0.00 0.00 0.00 2.57
2129 3303 7.921745 AGAAAAACTAGATGGACGCTACTATTC 59.078 37.037 0.00 0.00 0.00 1.75
2130 3304 7.783042 AGAAAAACTAGATGGACGCTACTATT 58.217 34.615 0.00 0.00 0.00 1.73
2131 3305 7.349412 AGAAAAACTAGATGGACGCTACTAT 57.651 36.000 0.00 0.00 0.00 2.12
2132 3306 6.770746 AGAAAAACTAGATGGACGCTACTA 57.229 37.500 0.00 0.00 0.00 1.82
2133 3307 5.662674 AGAAAAACTAGATGGACGCTACT 57.337 39.130 0.00 0.00 0.00 2.57
2134 3308 7.009357 CAGTAAGAAAAACTAGATGGACGCTAC 59.991 40.741 0.00 0.00 0.00 3.58
2135 3309 7.033791 CAGTAAGAAAAACTAGATGGACGCTA 58.966 38.462 0.00 0.00 0.00 4.26
2136 3310 5.869888 CAGTAAGAAAAACTAGATGGACGCT 59.130 40.000 0.00 0.00 0.00 5.07
2137 3311 5.063564 CCAGTAAGAAAAACTAGATGGACGC 59.936 44.000 0.00 0.00 30.67 5.19
2138 3312 6.164176 ACCAGTAAGAAAAACTAGATGGACG 58.836 40.000 0.00 0.00 32.35 4.79
2139 3313 7.981102 AACCAGTAAGAAAAACTAGATGGAC 57.019 36.000 0.00 0.00 32.35 4.02
2140 3314 8.846211 CAAAACCAGTAAGAAAAACTAGATGGA 58.154 33.333 0.00 0.00 32.35 3.41
2141 3315 8.630037 ACAAAACCAGTAAGAAAAACTAGATGG 58.370 33.333 0.00 0.00 33.42 3.51
2147 3321 9.850628 GAGTAAACAAAACCAGTAAGAAAAACT 57.149 29.630 0.00 0.00 0.00 2.66
2148 3322 9.079833 GGAGTAAACAAAACCAGTAAGAAAAAC 57.920 33.333 0.00 0.00 0.00 2.43
2149 3323 8.804204 TGGAGTAAACAAAACCAGTAAGAAAAA 58.196 29.630 0.00 0.00 0.00 1.94
2150 3324 8.350852 TGGAGTAAACAAAACCAGTAAGAAAA 57.649 30.769 0.00 0.00 0.00 2.29
2151 3325 7.830201 TCTGGAGTAAACAAAACCAGTAAGAAA 59.170 33.333 0.00 0.00 45.50 2.52
2152 3326 7.340256 TCTGGAGTAAACAAAACCAGTAAGAA 58.660 34.615 0.00 0.00 45.50 2.52
2153 3327 6.891388 TCTGGAGTAAACAAAACCAGTAAGA 58.109 36.000 0.00 0.00 45.50 2.10
2154 3328 7.562454 TTCTGGAGTAAACAAAACCAGTAAG 57.438 36.000 0.00 0.00 45.50 2.34
2155 3329 8.528044 AATTCTGGAGTAAACAAAACCAGTAA 57.472 30.769 0.00 0.00 45.50 2.24
2156 3330 9.059260 GTAATTCTGGAGTAAACAAAACCAGTA 57.941 33.333 0.00 0.00 45.50 2.74
2157 3331 7.778382 AGTAATTCTGGAGTAAACAAAACCAGT 59.222 33.333 0.00 0.00 45.50 4.00
2158 3332 8.076178 CAGTAATTCTGGAGTAAACAAAACCAG 58.924 37.037 0.00 0.00 46.33 4.00
2159 3333 7.936584 CAGTAATTCTGGAGTAAACAAAACCA 58.063 34.615 0.00 0.00 40.23 3.67
2175 3349 4.705507 TCAGCGAGGTAAGACAGTAATTCT 59.294 41.667 0.00 0.00 0.00 2.40
2176 3350 4.799428 GTCAGCGAGGTAAGACAGTAATTC 59.201 45.833 0.00 0.00 0.00 2.17
2177 3351 4.674623 CGTCAGCGAGGTAAGACAGTAATT 60.675 45.833 0.00 0.00 41.33 1.40
2178 3352 3.181499 CGTCAGCGAGGTAAGACAGTAAT 60.181 47.826 0.00 0.00 41.33 1.89
2179 3353 2.161012 CGTCAGCGAGGTAAGACAGTAA 59.839 50.000 0.00 0.00 41.33 2.24
2180 3354 1.736126 CGTCAGCGAGGTAAGACAGTA 59.264 52.381 0.00 0.00 41.33 2.74
2181 3355 0.522180 CGTCAGCGAGGTAAGACAGT 59.478 55.000 0.00 0.00 41.33 3.55
2182 3356 0.522180 ACGTCAGCGAGGTAAGACAG 59.478 55.000 2.80 0.00 42.00 3.51
2183 3357 0.240145 CACGTCAGCGAGGTAAGACA 59.760 55.000 0.00 0.00 42.00 3.41
2184 3358 0.240411 ACACGTCAGCGAGGTAAGAC 59.760 55.000 0.00 0.00 42.00 3.01
2185 3359 0.240145 CACACGTCAGCGAGGTAAGA 59.760 55.000 0.00 0.00 42.00 2.10
2186 3360 0.732880 CCACACGTCAGCGAGGTAAG 60.733 60.000 0.00 1.50 42.00 2.34
2187 3361 1.287815 CCACACGTCAGCGAGGTAA 59.712 57.895 0.00 0.00 42.00 2.85
2188 3362 2.632544 CCCACACGTCAGCGAGGTA 61.633 63.158 0.00 0.00 42.00 3.08
2189 3363 3.991051 CCCACACGTCAGCGAGGT 61.991 66.667 0.00 0.00 42.00 3.85
2190 3364 4.742201 CCCCACACGTCAGCGAGG 62.742 72.222 0.00 0.00 42.00 4.63
2191 3365 3.916392 GACCCCACACGTCAGCGAG 62.916 68.421 0.00 0.00 42.00 5.03
2192 3366 3.986006 GACCCCACACGTCAGCGA 61.986 66.667 0.00 0.00 42.00 4.93
2194 3368 3.296709 ATCGACCCCACACGTCAGC 62.297 63.158 0.00 0.00 0.00 4.26
2195 3369 1.153823 GATCGACCCCACACGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
2196 3370 2.642254 GGATCGACCCCACACGTCA 61.642 63.158 0.00 0.00 0.00 4.35
2197 3371 2.183555 GGATCGACCCCACACGTC 59.816 66.667 0.00 0.00 0.00 4.34
2228 3402 2.683362 TGTAGACATAGTCGCTGACCAG 59.317 50.000 5.29 0.00 37.67 4.00
2229 3403 2.718563 TGTAGACATAGTCGCTGACCA 58.281 47.619 5.29 0.00 37.67 4.02
2230 3404 3.777465 TTGTAGACATAGTCGCTGACC 57.223 47.619 5.29 0.00 37.67 4.02
2231 3405 4.559251 CACTTTGTAGACATAGTCGCTGAC 59.441 45.833 3.15 1.15 36.29 3.51
2232 3406 4.380550 CCACTTTGTAGACATAGTCGCTGA 60.381 45.833 3.15 0.00 36.29 4.26
2233 3407 3.859961 CCACTTTGTAGACATAGTCGCTG 59.140 47.826 3.15 0.00 36.29 5.18
2234 3408 3.676324 GCCACTTTGTAGACATAGTCGCT 60.676 47.826 12.95 0.00 38.34 4.93
2235 3409 2.603560 GCCACTTTGTAGACATAGTCGC 59.396 50.000 6.99 6.99 36.29 5.19
2236 3410 2.852413 CGCCACTTTGTAGACATAGTCG 59.148 50.000 3.15 2.45 36.29 4.18
2237 3411 3.612860 CACGCCACTTTGTAGACATAGTC 59.387 47.826 3.15 0.00 36.29 2.59
2238 3412 3.006537 ACACGCCACTTTGTAGACATAGT 59.993 43.478 0.51 0.51 38.40 2.12
2239 3413 3.367932 CACACGCCACTTTGTAGACATAG 59.632 47.826 0.00 0.00 0.00 2.23
2240 3414 3.322369 CACACGCCACTTTGTAGACATA 58.678 45.455 0.00 0.00 0.00 2.29
2241 3415 2.143122 CACACGCCACTTTGTAGACAT 58.857 47.619 0.00 0.00 0.00 3.06
2242 3416 1.577468 CACACGCCACTTTGTAGACA 58.423 50.000 0.00 0.00 0.00 3.41
2243 3417 0.234884 GCACACGCCACTTTGTAGAC 59.765 55.000 0.00 0.00 0.00 2.59
2244 3418 1.218875 CGCACACGCCACTTTGTAGA 61.219 55.000 0.00 0.00 33.11 2.59
2245 3419 1.204062 CGCACACGCCACTTTGTAG 59.796 57.895 0.00 0.00 33.11 2.74
2246 3420 2.248135 CCGCACACGCCACTTTGTA 61.248 57.895 0.00 0.00 38.22 2.41
2247 3421 3.582120 CCGCACACGCCACTTTGT 61.582 61.111 0.00 0.00 38.22 2.83
2248 3422 2.982038 GAACCGCACACGCCACTTTG 62.982 60.000 0.00 0.00 38.22 2.77
2249 3423 2.826738 AACCGCACACGCCACTTT 60.827 55.556 0.00 0.00 38.22 2.66
2250 3424 3.276846 GAACCGCACACGCCACTT 61.277 61.111 0.00 0.00 38.22 3.16
2271 3445 3.927163 TTTTCGTCTCGAGGGCGCC 62.927 63.158 21.18 21.18 37.14 6.53
2272 3446 2.431942 TTTTCGTCTCGAGGGCGC 60.432 61.111 20.10 0.00 37.14 6.53
2273 3447 0.179134 ATCTTTTCGTCTCGAGGGCG 60.179 55.000 13.56 17.06 37.14 6.13
2274 3448 1.135333 AGATCTTTTCGTCTCGAGGGC 59.865 52.381 13.56 5.22 37.14 5.19
2275 3449 3.628487 AGTAGATCTTTTCGTCTCGAGGG 59.372 47.826 13.56 5.29 37.14 4.30
2276 3450 4.593157 CAGTAGATCTTTTCGTCTCGAGG 58.407 47.826 13.56 0.00 37.14 4.63
2277 3451 4.032355 GCAGTAGATCTTTTCGTCTCGAG 58.968 47.826 5.93 5.93 37.14 4.04
2278 3452 3.181499 GGCAGTAGATCTTTTCGTCTCGA 60.181 47.826 0.00 0.00 0.00 4.04
2279 3453 3.109619 GGCAGTAGATCTTTTCGTCTCG 58.890 50.000 0.00 0.00 0.00 4.04
2280 3454 3.860536 GTGGCAGTAGATCTTTTCGTCTC 59.139 47.826 0.00 0.00 0.00 3.36
2281 3455 3.368531 GGTGGCAGTAGATCTTTTCGTCT 60.369 47.826 0.00 0.00 0.00 4.18
2282 3456 2.930682 GGTGGCAGTAGATCTTTTCGTC 59.069 50.000 0.00 0.00 0.00 4.20
2283 3457 2.674177 CGGTGGCAGTAGATCTTTTCGT 60.674 50.000 0.00 0.00 0.00 3.85
2284 3458 1.927174 CGGTGGCAGTAGATCTTTTCG 59.073 52.381 0.00 0.00 0.00 3.46
2285 3459 1.666189 GCGGTGGCAGTAGATCTTTTC 59.334 52.381 0.00 0.00 39.62 2.29
2286 3460 1.679032 GGCGGTGGCAGTAGATCTTTT 60.679 52.381 0.00 0.00 42.47 2.27
2287 3461 0.107654 GGCGGTGGCAGTAGATCTTT 60.108 55.000 0.00 0.00 42.47 2.52
2288 3462 0.978146 AGGCGGTGGCAGTAGATCTT 60.978 55.000 0.00 0.00 42.47 2.40
2289 3463 1.381872 AGGCGGTGGCAGTAGATCT 60.382 57.895 0.00 0.00 42.47 2.75
2290 3464 1.227380 CAGGCGGTGGCAGTAGATC 60.227 63.158 0.00 0.00 42.47 2.75
2291 3465 1.050988 ATCAGGCGGTGGCAGTAGAT 61.051 55.000 0.00 0.00 42.47 1.98
2292 3466 0.396556 TATCAGGCGGTGGCAGTAGA 60.397 55.000 0.00 0.00 42.47 2.59
2293 3467 0.681733 ATATCAGGCGGTGGCAGTAG 59.318 55.000 0.00 0.00 42.47 2.57
2294 3468 1.070134 GAATATCAGGCGGTGGCAGTA 59.930 52.381 0.00 0.00 42.47 2.74
2295 3469 0.179045 GAATATCAGGCGGTGGCAGT 60.179 55.000 0.00 0.00 42.47 4.40
2296 3470 0.886490 GGAATATCAGGCGGTGGCAG 60.886 60.000 0.00 0.00 42.47 4.85
2297 3471 1.148273 GGAATATCAGGCGGTGGCA 59.852 57.895 0.00 0.00 42.47 4.92
2298 3472 0.886490 CAGGAATATCAGGCGGTGGC 60.886 60.000 0.00 0.00 38.90 5.01
2299 3473 0.469917 ACAGGAATATCAGGCGGTGG 59.530 55.000 0.00 0.00 0.00 4.61
2300 3474 1.138859 TCACAGGAATATCAGGCGGTG 59.861 52.381 0.00 0.00 0.00 4.94
2301 3475 1.139058 GTCACAGGAATATCAGGCGGT 59.861 52.381 0.00 0.00 0.00 5.68
2302 3476 1.541233 GGTCACAGGAATATCAGGCGG 60.541 57.143 0.00 0.00 0.00 6.13
2303 3477 1.138859 TGGTCACAGGAATATCAGGCG 59.861 52.381 0.00 0.00 0.00 5.52
2304 3478 2.843701 CTGGTCACAGGAATATCAGGC 58.156 52.381 0.00 0.00 41.13 4.85
2305 3479 2.437281 AGCTGGTCACAGGAATATCAGG 59.563 50.000 0.00 0.00 45.04 3.86
2306 3480 3.133542 TCAGCTGGTCACAGGAATATCAG 59.866 47.826 15.13 0.00 45.04 2.90
2307 3481 3.106827 TCAGCTGGTCACAGGAATATCA 58.893 45.455 15.13 0.00 45.04 2.15
2308 3482 3.494048 CCTCAGCTGGTCACAGGAATATC 60.494 52.174 15.13 0.00 45.04 1.63
2309 3483 2.437281 CCTCAGCTGGTCACAGGAATAT 59.563 50.000 15.13 0.00 45.04 1.28
2310 3484 1.833630 CCTCAGCTGGTCACAGGAATA 59.166 52.381 15.13 0.00 45.04 1.75
2311 3485 0.617413 CCTCAGCTGGTCACAGGAAT 59.383 55.000 15.13 0.00 45.04 3.01
2312 3486 1.483595 CCCTCAGCTGGTCACAGGAA 61.484 60.000 17.74 0.00 45.04 3.36
2313 3487 1.915266 CCCTCAGCTGGTCACAGGA 60.915 63.158 17.74 0.00 45.04 3.86
2314 3488 2.667418 CCCTCAGCTGGTCACAGG 59.333 66.667 15.13 12.59 45.04 4.00
2316 3490 1.782201 AATGCCCTCAGCTGGTCACA 61.782 55.000 15.13 8.33 44.23 3.58
2317 3491 0.610232 AAATGCCCTCAGCTGGTCAC 60.610 55.000 15.13 2.25 44.23 3.67
2318 3492 0.609957 CAAATGCCCTCAGCTGGTCA 60.610 55.000 15.13 7.19 44.23 4.02
2319 3493 0.610232 ACAAATGCCCTCAGCTGGTC 60.610 55.000 15.13 1.25 44.23 4.02
2320 3494 0.896940 CACAAATGCCCTCAGCTGGT 60.897 55.000 15.13 0.00 44.23 4.00
2321 3495 0.609957 TCACAAATGCCCTCAGCTGG 60.610 55.000 15.13 4.45 44.23 4.85
2322 3496 0.809385 CTCACAAATGCCCTCAGCTG 59.191 55.000 7.63 7.63 44.23 4.24
2323 3497 0.694771 TCTCACAAATGCCCTCAGCT 59.305 50.000 0.00 0.00 44.23 4.24
2324 3498 1.760192 ATCTCACAAATGCCCTCAGC 58.240 50.000 0.00 0.00 44.14 4.26
2325 3499 3.760151 TGAAATCTCACAAATGCCCTCAG 59.240 43.478 0.00 0.00 0.00 3.35
2326 3500 3.765381 TGAAATCTCACAAATGCCCTCA 58.235 40.909 0.00 0.00 0.00 3.86
2338 3512 3.561313 GCCCAGGTTTAGGTGAAATCTCA 60.561 47.826 0.00 0.00 36.26 3.27
2339 3513 3.017442 GCCCAGGTTTAGGTGAAATCTC 58.983 50.000 0.00 0.00 36.26 2.75
2340 3514 2.291605 GGCCCAGGTTTAGGTGAAATCT 60.292 50.000 0.00 0.00 39.19 2.40
2341 3515 2.100197 GGCCCAGGTTTAGGTGAAATC 58.900 52.381 0.00 0.00 0.00 2.17
2342 3516 1.431243 TGGCCCAGGTTTAGGTGAAAT 59.569 47.619 0.00 0.00 0.00 2.17
2343 3517 0.854218 TGGCCCAGGTTTAGGTGAAA 59.146 50.000 0.00 0.00 0.00 2.69
2344 3518 0.854218 TTGGCCCAGGTTTAGGTGAA 59.146 50.000 0.00 0.00 0.00 3.18
2345 3519 0.404040 CTTGGCCCAGGTTTAGGTGA 59.596 55.000 0.00 0.00 0.00 4.02
2346 3520 0.112412 ACTTGGCCCAGGTTTAGGTG 59.888 55.000 8.98 0.00 0.00 4.00
2347 3521 0.112412 CACTTGGCCCAGGTTTAGGT 59.888 55.000 8.98 0.00 0.00 3.08
2348 3522 0.611896 CCACTTGGCCCAGGTTTAGG 60.612 60.000 8.98 0.00 0.00 2.69
2349 3523 2.961424 CCACTTGGCCCAGGTTTAG 58.039 57.895 8.98 0.00 0.00 1.85
2360 3534 1.542915 CAATGGTGAGAAGCCACTTGG 59.457 52.381 0.00 0.00 39.03 3.61
2361 3535 1.542915 CCAATGGTGAGAAGCCACTTG 59.457 52.381 0.00 0.00 39.03 3.16
2362 3536 1.145738 ACCAATGGTGAGAAGCCACTT 59.854 47.619 3.09 0.00 39.03 3.16
2363 3537 0.773644 ACCAATGGTGAGAAGCCACT 59.226 50.000 3.09 0.00 39.03 4.00
2364 3538 1.270550 CAACCAATGGTGAGAAGCCAC 59.729 52.381 5.34 0.00 39.03 5.01
2365 3539 1.619654 CAACCAATGGTGAGAAGCCA 58.380 50.000 5.34 0.00 40.68 4.75
2366 3540 0.244721 GCAACCAATGGTGAGAAGCC 59.755 55.000 5.34 0.00 35.34 4.35
2367 3541 1.200948 GAGCAACCAATGGTGAGAAGC 59.799 52.381 5.34 5.84 40.59 3.86
2368 3542 1.815003 GGAGCAACCAATGGTGAGAAG 59.185 52.381 5.34 0.00 40.59 2.85
2369 3543 1.547675 GGGAGCAACCAATGGTGAGAA 60.548 52.381 5.34 0.00 40.59 2.87
2370 3544 0.038166 GGGAGCAACCAATGGTGAGA 59.962 55.000 5.34 0.00 40.59 3.27
2371 3545 0.038744 AGGGAGCAACCAATGGTGAG 59.961 55.000 5.34 2.89 40.59 3.51
2372 3546 0.038166 GAGGGAGCAACCAATGGTGA 59.962 55.000 5.34 0.00 40.59 4.02
2373 3547 0.967380 GGAGGGAGCAACCAATGGTG 60.967 60.000 5.34 1.28 40.59 4.17
2374 3548 1.384191 GGAGGGAGCAACCAATGGT 59.616 57.895 0.00 0.00 43.97 3.55
2375 3549 4.344237 GGAGGGAGCAACCAATGG 57.656 61.111 0.00 0.00 41.20 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.