Multiple sequence alignment - TraesCS5D01G394300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G394300 chr5D 100.000 3243 0 0 1 3243 462093727 462090485 0.000000e+00 5989.0
1 TraesCS5D01G394300 chr5D 90.287 731 57 11 1148 1868 462362376 462361650 0.000000e+00 944.0
2 TraesCS5D01G394300 chr5D 86.667 495 31 18 552 1036 462362919 462362450 1.730000e-142 516.0
3 TraesCS5D01G394300 chr5A 89.516 2499 137 53 380 2837 582401994 582399580 0.000000e+00 3048.0
4 TraesCS5D01G394300 chr5A 85.593 1298 103 47 603 1868 582609159 582607914 0.000000e+00 1284.0
5 TraesCS5D01G394300 chr5A 90.838 382 14 9 2822 3187 582399284 582398908 2.910000e-135 492.0
6 TraesCS5D01G394300 chr5A 96.364 55 2 0 3189 3243 582398874 582398820 1.240000e-14 91.6
7 TraesCS5D01G394300 chr5B 86.552 2506 169 77 817 3243 568421575 568419159 0.000000e+00 2606.0
8 TraesCS5D01G394300 chr5B 89.011 728 65 10 1148 1868 568734188 568733469 0.000000e+00 887.0
9 TraesCS5D01G394300 chr5B 87.230 556 49 13 280 823 568428601 568428056 5.950000e-172 614.0
10 TraesCS5D01G394300 chr5B 83.411 428 28 20 609 1029 568734583 568734192 1.110000e-94 357.0
11 TraesCS5D01G394300 chr5B 92.708 96 7 0 188 283 568512882 568512787 4.360000e-29 139.0
12 TraesCS5D01G394300 chr3B 83.030 495 50 17 2776 3243 750435206 750434719 5.000000e-113 418.0
13 TraesCS5D01G394300 chr6D 97.340 188 5 0 1 188 284062870 284062683 1.450000e-83 320.0
14 TraesCS5D01G394300 chr6D 96.316 190 6 1 1 190 154319048 154319236 8.740000e-81 311.0
15 TraesCS5D01G394300 chr2D 98.352 182 3 0 1 182 461681256 461681075 1.450000e-83 320.0
16 TraesCS5D01G394300 chr2D 98.343 181 3 0 1 181 321843459 321843279 5.220000e-83 318.0
17 TraesCS5D01G394300 chr2D 96.296 189 6 1 1 189 293411857 293411670 3.140000e-80 309.0
18 TraesCS5D01G394300 chr2D 100.000 30 0 0 1548 1577 623330308 623330337 4.520000e-04 56.5
19 TraesCS5D01G394300 chr3D 98.343 181 3 0 1 181 370209221 370209041 5.220000e-83 318.0
20 TraesCS5D01G394300 chr4D 97.802 182 4 0 3 184 87692050 87691869 6.750000e-82 315.0
21 TraesCS5D01G394300 chr1D 97.312 186 4 1 1 185 377031948 377031763 6.750000e-82 315.0
22 TraesCS5D01G394300 chr7D 96.296 189 6 1 1 189 553886099 553886286 3.140000e-80 309.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G394300 chr5D 462090485 462093727 3242 True 5989.000000 5989 100.000000 1 3243 1 chr5D.!!$R1 3242
1 TraesCS5D01G394300 chr5D 462361650 462362919 1269 True 730.000000 944 88.477000 552 1868 2 chr5D.!!$R2 1316
2 TraesCS5D01G394300 chr5A 582607914 582609159 1245 True 1284.000000 1284 85.593000 603 1868 1 chr5A.!!$R1 1265
3 TraesCS5D01G394300 chr5A 582398820 582401994 3174 True 1210.533333 3048 92.239333 380 3243 3 chr5A.!!$R2 2863
4 TraesCS5D01G394300 chr5B 568419159 568421575 2416 True 2606.000000 2606 86.552000 817 3243 1 chr5B.!!$R1 2426
5 TraesCS5D01G394300 chr5B 568733469 568734583 1114 True 622.000000 887 86.211000 609 1868 2 chr5B.!!$R4 1259
6 TraesCS5D01G394300 chr5B 568428056 568428601 545 True 614.000000 614 87.230000 280 823 1 chr5B.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.0 0.00 0.0 36.20 3.62 F
557 566 0.105964 TTGGTGGTGAGACAGAACCG 59.894 55.0 0.00 0.0 39.47 4.44 F
1211 1269 0.035881 CTGTCAGGCTGGCTCTTGAA 59.964 55.0 21.22 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1087 0.25361 ACGAGGATGACGAGAGGAGT 59.746 55.0 0.00 0.00 34.7 3.85 R
1974 2065 0.31904 CGCATCATGGACGGAGGTAG 60.319 60.0 0.00 0.00 0.0 3.18 R
2579 2709 0.45541 CTCTCAAGCCTCTCGAGTGG 59.545 60.0 25.78 25.78 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.910637 TCGTTACTTGCTCGTTACAAATT 57.089 34.783 0.00 0.00 0.00 1.82
24 25 7.585286 ATCGTTACTTGCTCGTTACAAATTA 57.415 32.000 0.00 0.00 0.00 1.40
25 26 7.585286 TCGTTACTTGCTCGTTACAAATTAT 57.415 32.000 0.00 0.00 0.00 1.28
26 27 7.669098 TCGTTACTTGCTCGTTACAAATTATC 58.331 34.615 0.00 0.00 0.00 1.75
27 28 7.543172 TCGTTACTTGCTCGTTACAAATTATCT 59.457 33.333 0.00 0.00 0.00 1.98
28 29 8.166706 CGTTACTTGCTCGTTACAAATTATCTT 58.833 33.333 0.00 0.00 0.00 2.40
29 30 9.262472 GTTACTTGCTCGTTACAAATTATCTTG 57.738 33.333 0.00 0.00 0.00 3.02
30 31 6.314784 ACTTGCTCGTTACAAATTATCTTGC 58.685 36.000 0.00 0.00 0.00 4.01
31 32 6.149474 ACTTGCTCGTTACAAATTATCTTGCT 59.851 34.615 0.00 0.00 0.00 3.91
32 33 7.333423 ACTTGCTCGTTACAAATTATCTTGCTA 59.667 33.333 0.00 0.00 0.00 3.49
33 34 7.000575 TGCTCGTTACAAATTATCTTGCTAC 57.999 36.000 0.00 0.00 0.00 3.58
34 35 6.036735 TGCTCGTTACAAATTATCTTGCTACC 59.963 38.462 0.00 0.00 0.00 3.18
35 36 6.036735 GCTCGTTACAAATTATCTTGCTACCA 59.963 38.462 0.00 0.00 0.00 3.25
36 37 7.413657 GCTCGTTACAAATTATCTTGCTACCAA 60.414 37.037 0.00 0.00 0.00 3.67
37 38 8.325421 TCGTTACAAATTATCTTGCTACCAAA 57.675 30.769 0.00 0.00 0.00 3.28
38 39 8.231837 TCGTTACAAATTATCTTGCTACCAAAC 58.768 33.333 0.00 0.00 0.00 2.93
39 40 8.234546 CGTTACAAATTATCTTGCTACCAAACT 58.765 33.333 0.00 0.00 0.00 2.66
42 43 8.863872 ACAAATTATCTTGCTACCAAACTACT 57.136 30.769 0.00 0.00 0.00 2.57
43 44 8.947115 ACAAATTATCTTGCTACCAAACTACTC 58.053 33.333 0.00 0.00 0.00 2.59
44 45 8.398665 CAAATTATCTTGCTACCAAACTACTCC 58.601 37.037 0.00 0.00 0.00 3.85
45 46 3.587797 TCTTGCTACCAAACTACTCCG 57.412 47.619 0.00 0.00 0.00 4.63
46 47 2.000447 CTTGCTACCAAACTACTCCGC 59.000 52.381 0.00 0.00 0.00 5.54
47 48 1.263356 TGCTACCAAACTACTCCGCT 58.737 50.000 0.00 0.00 0.00 5.52
48 49 2.449464 TGCTACCAAACTACTCCGCTA 58.551 47.619 0.00 0.00 0.00 4.26
49 50 2.165030 TGCTACCAAACTACTCCGCTAC 59.835 50.000 0.00 0.00 0.00 3.58
50 51 2.426381 GCTACCAAACTACTCCGCTACT 59.574 50.000 0.00 0.00 0.00 2.57
51 52 3.119209 GCTACCAAACTACTCCGCTACTT 60.119 47.826 0.00 0.00 0.00 2.24
52 53 4.096984 GCTACCAAACTACTCCGCTACTTA 59.903 45.833 0.00 0.00 0.00 2.24
53 54 4.446994 ACCAAACTACTCCGCTACTTAC 57.553 45.455 0.00 0.00 0.00 2.34
54 55 3.828451 ACCAAACTACTCCGCTACTTACA 59.172 43.478 0.00 0.00 0.00 2.41
55 56 4.281688 ACCAAACTACTCCGCTACTTACAA 59.718 41.667 0.00 0.00 0.00 2.41
56 57 5.046807 ACCAAACTACTCCGCTACTTACAAT 60.047 40.000 0.00 0.00 0.00 2.71
57 58 5.873164 CCAAACTACTCCGCTACTTACAATT 59.127 40.000 0.00 0.00 0.00 2.32
58 59 6.370718 CCAAACTACTCCGCTACTTACAATTT 59.629 38.462 0.00 0.00 0.00 1.82
59 60 7.412672 CCAAACTACTCCGCTACTTACAATTTC 60.413 40.741 0.00 0.00 0.00 2.17
60 61 6.276832 ACTACTCCGCTACTTACAATTTCA 57.723 37.500 0.00 0.00 0.00 2.69
61 62 6.331061 ACTACTCCGCTACTTACAATTTCAG 58.669 40.000 0.00 0.00 0.00 3.02
62 63 3.933332 ACTCCGCTACTTACAATTTCAGC 59.067 43.478 0.00 0.00 0.00 4.26
63 64 3.932710 CTCCGCTACTTACAATTTCAGCA 59.067 43.478 0.00 0.00 0.00 4.41
64 65 3.682858 TCCGCTACTTACAATTTCAGCAC 59.317 43.478 0.00 0.00 0.00 4.40
65 66 3.684788 CCGCTACTTACAATTTCAGCACT 59.315 43.478 0.00 0.00 0.00 4.40
66 67 4.154195 CCGCTACTTACAATTTCAGCACTT 59.846 41.667 0.00 0.00 0.00 3.16
67 68 5.082059 CGCTACTTACAATTTCAGCACTTG 58.918 41.667 0.00 0.00 0.00 3.16
68 69 4.853743 GCTACTTACAATTTCAGCACTTGC 59.146 41.667 0.00 0.00 42.49 4.01
69 70 4.916983 ACTTACAATTTCAGCACTTGCA 57.083 36.364 3.62 0.00 45.16 4.08
70 71 4.863491 ACTTACAATTTCAGCACTTGCAG 58.137 39.130 3.62 0.00 45.16 4.41
71 72 4.580167 ACTTACAATTTCAGCACTTGCAGA 59.420 37.500 3.62 0.00 45.16 4.26
72 73 5.242393 ACTTACAATTTCAGCACTTGCAGAT 59.758 36.000 3.62 0.00 45.16 2.90
73 74 6.430925 ACTTACAATTTCAGCACTTGCAGATA 59.569 34.615 3.62 0.00 45.16 1.98
74 75 5.909621 ACAATTTCAGCACTTGCAGATAT 57.090 34.783 3.62 0.00 45.16 1.63
75 76 6.276832 ACAATTTCAGCACTTGCAGATATT 57.723 33.333 3.62 5.37 45.16 1.28
76 77 7.395190 ACAATTTCAGCACTTGCAGATATTA 57.605 32.000 10.45 0.00 45.16 0.98
77 78 7.253422 ACAATTTCAGCACTTGCAGATATTAC 58.747 34.615 10.45 0.00 45.16 1.89
78 79 5.818136 TTTCAGCACTTGCAGATATTACC 57.182 39.130 3.62 0.00 45.16 2.85
79 80 4.760530 TCAGCACTTGCAGATATTACCT 57.239 40.909 3.62 0.00 45.16 3.08
80 81 5.102953 TCAGCACTTGCAGATATTACCTT 57.897 39.130 3.62 0.00 45.16 3.50
81 82 6.233905 TCAGCACTTGCAGATATTACCTTA 57.766 37.500 3.62 0.00 45.16 2.69
82 83 6.049149 TCAGCACTTGCAGATATTACCTTAC 58.951 40.000 3.62 0.00 45.16 2.34
83 84 6.051717 CAGCACTTGCAGATATTACCTTACT 58.948 40.000 3.62 0.00 45.16 2.24
84 85 6.018425 CAGCACTTGCAGATATTACCTTACTG 60.018 42.308 3.62 0.00 45.16 2.74
85 86 6.049149 GCACTTGCAGATATTACCTTACTGA 58.951 40.000 0.00 0.00 41.59 3.41
86 87 6.538742 GCACTTGCAGATATTACCTTACTGAA 59.461 38.462 0.00 0.00 41.59 3.02
87 88 7.065803 GCACTTGCAGATATTACCTTACTGAAA 59.934 37.037 0.00 0.00 41.59 2.69
88 89 8.946085 CACTTGCAGATATTACCTTACTGAAAA 58.054 33.333 0.00 0.00 0.00 2.29
89 90 8.947115 ACTTGCAGATATTACCTTACTGAAAAC 58.053 33.333 0.00 0.00 0.00 2.43
90 91 9.167311 CTTGCAGATATTACCTTACTGAAAACT 57.833 33.333 0.00 0.00 0.00 2.66
92 93 9.595823 TGCAGATATTACCTTACTGAAAACTAC 57.404 33.333 0.00 0.00 0.00 2.73
93 94 9.819267 GCAGATATTACCTTACTGAAAACTACT 57.181 33.333 0.00 0.00 0.00 2.57
100 101 9.841295 TTACCTTACTGAAAACTACTTGTCATT 57.159 29.630 0.00 0.00 0.00 2.57
101 102 8.747538 ACCTTACTGAAAACTACTTGTCATTT 57.252 30.769 0.00 0.00 0.00 2.32
102 103 8.837389 ACCTTACTGAAAACTACTTGTCATTTC 58.163 33.333 0.00 0.00 0.00 2.17
103 104 8.290325 CCTTACTGAAAACTACTTGTCATTTCC 58.710 37.037 0.00 0.00 29.07 3.13
104 105 8.974060 TTACTGAAAACTACTTGTCATTTCCT 57.026 30.769 0.00 0.00 29.07 3.36
105 106 7.881775 ACTGAAAACTACTTGTCATTTCCTT 57.118 32.000 0.00 0.00 29.07 3.36
106 107 7.931275 ACTGAAAACTACTTGTCATTTCCTTC 58.069 34.615 0.00 0.00 29.07 3.46
107 108 7.775561 ACTGAAAACTACTTGTCATTTCCTTCT 59.224 33.333 0.00 0.00 29.07 2.85
108 109 7.930217 TGAAAACTACTTGTCATTTCCTTCTG 58.070 34.615 0.00 0.00 29.07 3.02
109 110 5.948992 AACTACTTGTCATTTCCTTCTGC 57.051 39.130 0.00 0.00 0.00 4.26
110 111 5.234466 ACTACTTGTCATTTCCTTCTGCT 57.766 39.130 0.00 0.00 0.00 4.24
111 112 5.241662 ACTACTTGTCATTTCCTTCTGCTC 58.758 41.667 0.00 0.00 0.00 4.26
112 113 3.416156 ACTTGTCATTTCCTTCTGCTCC 58.584 45.455 0.00 0.00 0.00 4.70
113 114 3.073650 ACTTGTCATTTCCTTCTGCTCCT 59.926 43.478 0.00 0.00 0.00 3.69
114 115 3.340814 TGTCATTTCCTTCTGCTCCTC 57.659 47.619 0.00 0.00 0.00 3.71
115 116 2.275318 GTCATTTCCTTCTGCTCCTCG 58.725 52.381 0.00 0.00 0.00 4.63
116 117 1.902508 TCATTTCCTTCTGCTCCTCGT 59.097 47.619 0.00 0.00 0.00 4.18
117 118 2.303022 TCATTTCCTTCTGCTCCTCGTT 59.697 45.455 0.00 0.00 0.00 3.85
118 119 2.169832 TTTCCTTCTGCTCCTCGTTG 57.830 50.000 0.00 0.00 0.00 4.10
119 120 0.321671 TTCCTTCTGCTCCTCGTTGG 59.678 55.000 0.00 0.00 37.10 3.77
120 121 1.078848 CCTTCTGCTCCTCGTTGGG 60.079 63.158 0.00 0.00 36.20 4.12
121 122 1.674057 CTTCTGCTCCTCGTTGGGT 59.326 57.895 0.00 0.00 36.20 4.51
122 123 0.035458 CTTCTGCTCCTCGTTGGGTT 59.965 55.000 0.00 0.00 36.20 4.11
123 124 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.00 36.20 3.62
124 125 1.738099 CTGCTCCTCGTTGGGTTCG 60.738 63.158 0.00 0.00 36.20 3.95
125 126 2.154798 CTGCTCCTCGTTGGGTTCGA 62.155 60.000 0.00 0.00 36.20 3.71
126 127 1.737008 GCTCCTCGTTGGGTTCGAC 60.737 63.158 0.00 0.00 36.20 4.20
127 128 1.663739 CTCCTCGTTGGGTTCGACA 59.336 57.895 0.00 0.00 36.20 4.35
128 129 0.666577 CTCCTCGTTGGGTTCGACAC 60.667 60.000 0.00 0.00 36.20 3.67
129 130 1.111116 TCCTCGTTGGGTTCGACACT 61.111 55.000 0.00 0.00 36.20 3.55
130 131 0.666577 CCTCGTTGGGTTCGACACTC 60.667 60.000 0.00 0.00 33.71 3.51
131 132 0.314302 CTCGTTGGGTTCGACACTCT 59.686 55.000 0.00 0.00 33.71 3.24
132 133 0.748450 TCGTTGGGTTCGACACTCTT 59.252 50.000 0.00 0.00 32.30 2.85
133 134 1.955778 TCGTTGGGTTCGACACTCTTA 59.044 47.619 0.00 0.00 32.30 2.10
134 135 2.056577 CGTTGGGTTCGACACTCTTAC 58.943 52.381 0.00 0.00 0.00 2.34
135 136 2.288030 CGTTGGGTTCGACACTCTTACT 60.288 50.000 0.00 0.00 0.00 2.24
136 137 3.725490 GTTGGGTTCGACACTCTTACTT 58.275 45.455 0.00 0.00 0.00 2.24
137 138 4.557296 CGTTGGGTTCGACACTCTTACTTA 60.557 45.833 0.00 0.00 0.00 2.24
138 139 5.476614 GTTGGGTTCGACACTCTTACTTAT 58.523 41.667 0.00 0.00 0.00 1.73
139 140 5.320549 TGGGTTCGACACTCTTACTTATC 57.679 43.478 0.00 0.00 0.00 1.75
140 141 4.142534 TGGGTTCGACACTCTTACTTATCG 60.143 45.833 0.00 0.00 0.00 2.92
141 142 4.095483 GGGTTCGACACTCTTACTTATCGA 59.905 45.833 0.00 0.00 36.85 3.59
142 143 5.392380 GGGTTCGACACTCTTACTTATCGAA 60.392 44.000 2.99 2.99 43.90 3.71
143 144 6.088824 GGTTCGACACTCTTACTTATCGAAA 58.911 40.000 8.30 0.00 46.48 3.46
144 145 6.583806 GGTTCGACACTCTTACTTATCGAAAA 59.416 38.462 8.30 0.00 46.48 2.29
145 146 7.201333 GGTTCGACACTCTTACTTATCGAAAAG 60.201 40.741 8.30 0.00 46.48 2.27
146 147 7.137490 TCGACACTCTTACTTATCGAAAAGA 57.863 36.000 0.00 0.00 35.80 2.52
147 148 7.242079 TCGACACTCTTACTTATCGAAAAGAG 58.758 38.462 16.62 16.62 46.69 2.85
148 149 6.021311 CGACACTCTTACTTATCGAAAAGAGC 60.021 42.308 17.49 7.32 45.71 4.09
149 150 6.926313 ACACTCTTACTTATCGAAAAGAGCT 58.074 36.000 17.49 0.00 45.71 4.09
150 151 8.053026 ACACTCTTACTTATCGAAAAGAGCTA 57.947 34.615 17.49 0.00 45.71 3.32
151 152 7.969508 ACACTCTTACTTATCGAAAAGAGCTAC 59.030 37.037 17.49 0.00 45.71 3.58
152 153 7.968956 CACTCTTACTTATCGAAAAGAGCTACA 59.031 37.037 17.49 0.00 45.71 2.74
153 154 8.521176 ACTCTTACTTATCGAAAAGAGCTACAA 58.479 33.333 17.49 0.00 45.71 2.41
154 155 9.522804 CTCTTACTTATCGAAAAGAGCTACAAT 57.477 33.333 10.09 0.00 38.75 2.71
155 156 9.871238 TCTTACTTATCGAAAAGAGCTACAATT 57.129 29.630 0.00 0.00 0.00 2.32
156 157 9.907576 CTTACTTATCGAAAAGAGCTACAATTG 57.092 33.333 3.24 3.24 0.00 2.32
157 158 9.647797 TTACTTATCGAAAAGAGCTACAATTGA 57.352 29.630 13.59 0.00 0.00 2.57
158 159 8.723942 ACTTATCGAAAAGAGCTACAATTGAT 57.276 30.769 13.59 0.00 0.00 2.57
159 160 8.821894 ACTTATCGAAAAGAGCTACAATTGATC 58.178 33.333 13.59 4.68 0.00 2.92
160 161 6.610741 ATCGAAAAGAGCTACAATTGATCC 57.389 37.500 13.59 0.00 0.00 3.36
161 162 4.876107 TCGAAAAGAGCTACAATTGATCCC 59.124 41.667 13.59 0.00 0.00 3.85
162 163 4.035675 CGAAAAGAGCTACAATTGATCCCC 59.964 45.833 13.59 0.00 0.00 4.81
163 164 4.870021 AAAGAGCTACAATTGATCCCCT 57.130 40.909 13.59 0.72 0.00 4.79
164 165 5.975988 AAAGAGCTACAATTGATCCCCTA 57.024 39.130 13.59 0.00 0.00 3.53
165 166 6.521527 AAAGAGCTACAATTGATCCCCTAT 57.478 37.500 13.59 0.00 0.00 2.57
166 167 7.633018 AAAGAGCTACAATTGATCCCCTATA 57.367 36.000 13.59 0.00 0.00 1.31
167 168 6.613153 AGAGCTACAATTGATCCCCTATAC 57.387 41.667 13.59 0.00 0.00 1.47
168 169 6.326970 AGAGCTACAATTGATCCCCTATACT 58.673 40.000 13.59 0.00 0.00 2.12
169 170 6.789959 AGAGCTACAATTGATCCCCTATACTT 59.210 38.462 13.59 0.00 0.00 2.24
170 171 6.773638 AGCTACAATTGATCCCCTATACTTG 58.226 40.000 13.59 0.00 0.00 3.16
171 172 6.330250 AGCTACAATTGATCCCCTATACTTGT 59.670 38.462 13.59 0.00 0.00 3.16
172 173 6.428159 GCTACAATTGATCCCCTATACTTGTG 59.572 42.308 13.59 0.00 0.00 3.33
173 174 5.694995 ACAATTGATCCCCTATACTTGTGG 58.305 41.667 13.59 0.00 0.00 4.17
174 175 5.072741 CAATTGATCCCCTATACTTGTGGG 58.927 45.833 0.00 0.00 40.59 4.61
175 176 3.431411 TGATCCCCTATACTTGTGGGT 57.569 47.619 0.00 0.00 39.31 4.51
176 177 3.314693 TGATCCCCTATACTTGTGGGTC 58.685 50.000 0.00 0.00 39.31 4.46
177 178 1.784358 TCCCCTATACTTGTGGGTCG 58.216 55.000 0.00 0.00 39.31 4.79
178 179 1.007479 TCCCCTATACTTGTGGGTCGT 59.993 52.381 0.00 0.00 39.31 4.34
179 180 1.411612 CCCCTATACTTGTGGGTCGTC 59.588 57.143 0.00 0.00 39.31 4.20
180 181 2.104967 CCCTATACTTGTGGGTCGTCA 58.895 52.381 0.00 0.00 36.32 4.35
181 182 2.159142 CCCTATACTTGTGGGTCGTCAC 60.159 54.545 0.00 0.00 36.32 3.67
182 183 2.159142 CCTATACTTGTGGGTCGTCACC 60.159 54.545 0.00 0.00 42.90 4.02
190 191 2.426023 GGTCGTCACCCAGCAACT 59.574 61.111 0.00 0.00 36.54 3.16
191 192 1.961277 GGTCGTCACCCAGCAACTG 60.961 63.158 0.00 0.00 36.54 3.16
192 193 2.280797 TCGTCACCCAGCAACTGC 60.281 61.111 0.00 0.00 42.49 4.40
210 211 4.541213 GGAGGCCCGATATCTCCA 57.459 61.111 0.00 0.00 44.72 3.86
211 212 1.976112 GGAGGCCCGATATCTCCAC 59.024 63.158 0.00 0.00 44.72 4.02
212 213 1.587054 GAGGCCCGATATCTCCACG 59.413 63.158 0.00 0.00 0.00 4.94
213 214 2.048127 GGCCCGATATCTCCACGC 60.048 66.667 0.34 0.00 0.00 5.34
214 215 2.048127 GCCCGATATCTCCACGCC 60.048 66.667 0.34 0.00 0.00 5.68
215 216 2.574955 GCCCGATATCTCCACGCCT 61.575 63.158 0.34 0.00 0.00 5.52
216 217 1.290324 CCCGATATCTCCACGCCTG 59.710 63.158 0.34 0.00 0.00 4.85
217 218 1.373497 CCGATATCTCCACGCCTGC 60.373 63.158 0.34 0.00 0.00 4.85
218 219 1.373497 CGATATCTCCACGCCTGCC 60.373 63.158 0.34 0.00 0.00 4.85
219 220 1.748403 GATATCTCCACGCCTGCCA 59.252 57.895 0.00 0.00 0.00 4.92
220 221 0.320247 GATATCTCCACGCCTGCCAG 60.320 60.000 0.00 0.00 0.00 4.85
221 222 2.388890 ATATCTCCACGCCTGCCAGC 62.389 60.000 0.00 0.00 0.00 4.85
230 231 4.340246 CCTGCCAGCAGCCACAGA 62.340 66.667 14.26 0.00 42.35 3.41
231 232 3.054503 CTGCCAGCAGCCACAGAC 61.055 66.667 6.72 0.00 42.71 3.51
232 233 4.648626 TGCCAGCAGCCACAGACC 62.649 66.667 0.00 0.00 42.71 3.85
233 234 4.648626 GCCAGCAGCCACAGACCA 62.649 66.667 0.00 0.00 34.35 4.02
234 235 2.113774 CCAGCAGCCACAGACCAA 59.886 61.111 0.00 0.00 0.00 3.67
235 236 1.970114 CCAGCAGCCACAGACCAAG 60.970 63.158 0.00 0.00 0.00 3.61
236 237 2.282040 AGCAGCCACAGACCAAGC 60.282 61.111 0.00 0.00 0.00 4.01
237 238 3.368571 GCAGCCACAGACCAAGCC 61.369 66.667 0.00 0.00 0.00 4.35
238 239 2.113774 CAGCCACAGACCAAGCCA 59.886 61.111 0.00 0.00 0.00 4.75
239 240 1.303888 CAGCCACAGACCAAGCCAT 60.304 57.895 0.00 0.00 0.00 4.40
240 241 1.303888 AGCCACAGACCAAGCCATG 60.304 57.895 0.00 0.00 0.00 3.66
241 242 1.604593 GCCACAGACCAAGCCATGT 60.605 57.895 0.00 0.00 0.00 3.21
242 243 1.589716 GCCACAGACCAAGCCATGTC 61.590 60.000 0.00 0.00 0.00 3.06
243 244 1.300971 CCACAGACCAAGCCATGTCG 61.301 60.000 0.00 0.00 36.61 4.35
244 245 1.003355 ACAGACCAAGCCATGTCGG 60.003 57.895 0.00 0.00 36.61 4.79
245 246 1.746615 CAGACCAAGCCATGTCGGG 60.747 63.158 0.00 0.00 36.61 5.14
253 254 4.961637 CCATGTCGGGCAGATCAA 57.038 55.556 0.00 0.00 0.00 2.57
254 255 2.699073 CCATGTCGGGCAGATCAAG 58.301 57.895 0.00 0.00 0.00 3.02
255 256 0.107508 CCATGTCGGGCAGATCAAGT 60.108 55.000 0.00 0.00 0.00 3.16
256 257 1.679944 CCATGTCGGGCAGATCAAGTT 60.680 52.381 0.00 0.00 0.00 2.66
257 258 1.667724 CATGTCGGGCAGATCAAGTTC 59.332 52.381 0.00 0.00 0.00 3.01
258 259 0.684535 TGTCGGGCAGATCAAGTTCA 59.315 50.000 0.00 0.00 0.00 3.18
259 260 1.071542 TGTCGGGCAGATCAAGTTCAA 59.928 47.619 0.00 0.00 0.00 2.69
260 261 1.734465 GTCGGGCAGATCAAGTTCAAG 59.266 52.381 0.00 0.00 0.00 3.02
261 262 1.623311 TCGGGCAGATCAAGTTCAAGA 59.377 47.619 0.00 0.00 0.00 3.02
262 263 2.005451 CGGGCAGATCAAGTTCAAGAG 58.995 52.381 0.00 0.00 0.00 2.85
263 264 1.742268 GGGCAGATCAAGTTCAAGAGC 59.258 52.381 0.00 0.00 0.00 4.09
264 265 1.396301 GGCAGATCAAGTTCAAGAGCG 59.604 52.381 0.00 0.00 0.00 5.03
265 266 1.396301 GCAGATCAAGTTCAAGAGCGG 59.604 52.381 0.00 0.00 0.00 5.52
266 267 2.932622 GCAGATCAAGTTCAAGAGCGGA 60.933 50.000 0.00 0.00 0.00 5.54
267 268 3.529533 CAGATCAAGTTCAAGAGCGGAT 58.470 45.455 0.00 0.00 0.00 4.18
268 269 4.686972 CAGATCAAGTTCAAGAGCGGATA 58.313 43.478 0.00 0.00 0.00 2.59
269 270 4.744137 CAGATCAAGTTCAAGAGCGGATAG 59.256 45.833 0.00 0.00 0.00 2.08
270 271 4.646945 AGATCAAGTTCAAGAGCGGATAGA 59.353 41.667 0.00 0.00 0.00 1.98
271 272 4.111375 TCAAGTTCAAGAGCGGATAGAC 57.889 45.455 0.00 0.00 0.00 2.59
272 273 3.119101 TCAAGTTCAAGAGCGGATAGACC 60.119 47.826 0.00 0.00 0.00 3.85
273 274 1.757699 AGTTCAAGAGCGGATAGACCC 59.242 52.381 0.00 0.00 34.64 4.46
286 287 4.176752 GACCCGAGACCCCATGCC 62.177 72.222 0.00 0.00 0.00 4.40
292 293 1.224592 GAGACCCCATGCCATCGTT 59.775 57.895 0.00 0.00 0.00 3.85
294 295 2.755469 ACCCCATGCCATCGTTGC 60.755 61.111 0.00 0.00 0.00 4.17
354 355 3.485431 CGCCAACGAGCAGAGCAG 61.485 66.667 0.00 0.00 43.93 4.24
360 361 4.426112 CGAGCAGAGCAGTCGCCA 62.426 66.667 0.00 0.00 39.83 5.69
370 371 2.006772 CAGTCGCCATAACTTCGCC 58.993 57.895 0.00 0.00 0.00 5.54
377 378 1.429148 CCATAACTTCGCCGCACCTC 61.429 60.000 0.00 0.00 0.00 3.85
378 379 0.739462 CATAACTTCGCCGCACCTCA 60.739 55.000 0.00 0.00 0.00 3.86
436 440 0.955919 GGGAGAAGAAAGTGGCACCG 60.956 60.000 15.27 0.00 0.00 4.94
450 454 4.787280 ACCGAGGAGAGGCCCTGG 62.787 72.222 0.00 0.00 36.49 4.45
508 512 3.518998 CGACGAGGAGGGACGCAT 61.519 66.667 0.00 0.00 0.00 4.73
513 517 1.153549 GAGGAGGGACGCATGTGTC 60.154 63.158 27.60 27.60 38.17 3.67
557 566 0.105964 TTGGTGGTGAGACAGAACCG 59.894 55.000 0.00 0.00 39.47 4.44
594 604 1.740025 CTTGGGACGCTGAATCTTTCC 59.260 52.381 0.00 0.00 0.00 3.13
656 674 1.356624 GCGAATTGGCGGATTCTGG 59.643 57.895 0.00 0.18 34.58 3.86
702 720 0.994247 TCCACCTGCCATTCATCAGT 59.006 50.000 0.00 0.00 0.00 3.41
720 738 1.077787 TGACACCCATGGAATCCGC 60.078 57.895 15.22 0.00 0.00 5.54
827 864 4.144731 GTGAAAACTGAAAACGATCGCAAG 59.855 41.667 16.60 8.19 0.00 4.01
1036 1075 2.616458 ATTGCCCTCTCCCACACCC 61.616 63.158 0.00 0.00 0.00 4.61
1052 1091 4.697102 CCCCCTCTCTCTCACTCC 57.303 66.667 0.00 0.00 0.00 3.85
1053 1092 2.015081 CCCCCTCTCTCTCACTCCT 58.985 63.158 0.00 0.00 0.00 3.69
1099 1145 2.997897 GTGACACCCGCTCCCTCT 60.998 66.667 0.00 0.00 0.00 3.69
1211 1269 0.035881 CTGTCAGGCTGGCTCTTGAA 59.964 55.000 21.22 0.00 0.00 2.69
1503 1588 4.273257 TGCTTGACGCGTCGGTGA 62.273 61.111 31.88 13.84 43.27 4.02
1637 1722 1.668151 GCAGCGGAGGAAGAACGTT 60.668 57.895 0.00 0.00 0.00 3.99
1945 2036 2.046988 CAGCCTGTGACGCCATGA 60.047 61.111 0.00 0.00 0.00 3.07
1947 2038 2.358615 GCCTGTGACGCCATGACA 60.359 61.111 0.00 0.00 0.00 3.58
1948 2039 1.746615 GCCTGTGACGCCATGACAT 60.747 57.895 0.00 0.00 0.00 3.06
1949 2040 1.985447 GCCTGTGACGCCATGACATG 61.985 60.000 8.56 8.56 0.00 3.21
1950 2041 1.426621 CTGTGACGCCATGACATGC 59.573 57.895 10.10 5.01 0.00 4.06
1952 2043 2.039974 GTGACGCCATGACATGCCA 61.040 57.895 10.10 2.49 0.00 4.92
1953 2044 1.077572 TGACGCCATGACATGCCAT 60.078 52.632 10.10 0.00 0.00 4.40
1954 2045 1.357690 GACGCCATGACATGCCATG 59.642 57.895 14.52 14.52 42.58 3.66
1955 2046 2.027024 CGCCATGACATGCCATGC 59.973 61.111 15.88 10.54 41.83 4.06
1956 2047 2.420043 GCCATGACATGCCATGCC 59.580 61.111 15.88 1.53 41.83 4.40
1957 2048 3.134879 CCATGACATGCCATGCCC 58.865 61.111 15.88 0.00 41.83 5.36
1972 2063 2.496291 GCCCGCCACCGATAGTAGT 61.496 63.158 0.00 0.00 36.29 2.73
1974 2065 0.595095 CCCGCCACCGATAGTAGTAC 59.405 60.000 0.00 0.00 36.29 2.73
1975 2066 1.602311 CCGCCACCGATAGTAGTACT 58.398 55.000 8.14 8.14 36.29 2.73
1976 2067 2.550855 CCCGCCACCGATAGTAGTACTA 60.551 54.545 12.38 12.38 34.82 1.82
1977 2068 2.481952 CCGCCACCGATAGTAGTACTAC 59.518 54.545 23.03 23.03 32.84 2.73
1978 2069 2.481952 CGCCACCGATAGTAGTACTACC 59.518 54.545 25.97 12.40 32.84 3.18
1982 2073 3.993081 CACCGATAGTAGTACTACCTCCG 59.007 52.174 25.97 23.40 36.75 4.63
2018 2117 1.419107 GCGTGCTCCGGTAAAGTAGC 61.419 60.000 0.00 1.75 36.94 3.58
2161 2264 5.370875 AGGAATTCTATCTCTTTGCTGCT 57.629 39.130 5.23 0.00 0.00 4.24
2162 2265 5.124645 AGGAATTCTATCTCTTTGCTGCTG 58.875 41.667 5.23 0.00 0.00 4.41
2208 2311 7.251704 AGATCACATCCGAACATGTAAAATC 57.748 36.000 0.00 0.00 35.10 2.17
2286 2392 1.088340 CCAGCGCTTGTGATCAGGAG 61.088 60.000 7.50 0.00 0.00 3.69
2288 2394 1.219124 GCGCTTGTGATCAGGAGGA 59.781 57.895 0.00 0.00 0.00 3.71
2290 2396 1.069204 GCGCTTGTGATCAGGAGGATA 59.931 52.381 0.00 0.00 36.00 2.59
2292 2398 2.363680 CGCTTGTGATCAGGAGGATAGT 59.636 50.000 0.00 0.00 36.00 2.12
2293 2399 3.570125 CGCTTGTGATCAGGAGGATAGTA 59.430 47.826 0.00 0.00 36.00 1.82
2295 2401 5.416013 CGCTTGTGATCAGGAGGATAGTATA 59.584 44.000 0.00 0.00 36.00 1.47
2296 2402 6.404184 CGCTTGTGATCAGGAGGATAGTATAG 60.404 46.154 0.00 0.00 36.00 1.31
2297 2403 6.435904 GCTTGTGATCAGGAGGATAGTATAGT 59.564 42.308 0.00 0.00 36.00 2.12
2298 2404 7.612244 GCTTGTGATCAGGAGGATAGTATAGTA 59.388 40.741 0.00 0.00 36.00 1.82
2299 2405 9.173021 CTTGTGATCAGGAGGATAGTATAGTAG 57.827 40.741 0.00 0.00 36.00 2.57
2350 2456 0.392998 TGAATTTCTCGAGCCCTGGC 60.393 55.000 7.81 0.00 42.33 4.85
2356 2462 4.704103 TCGAGCCCTGGCCAGAGT 62.704 66.667 34.91 17.58 43.17 3.24
2360 2466 4.792804 GCCCTGGCCAGAGTCTGC 62.793 72.222 34.91 21.99 34.56 4.26
2419 2525 5.592054 TCCTACTAGTTGCGATCAATCAAG 58.408 41.667 0.00 0.00 34.29 3.02
2422 2528 1.825090 AGTTGCGATCAATCAAGCCA 58.175 45.000 0.00 0.00 34.29 4.75
2423 2529 1.741706 AGTTGCGATCAATCAAGCCAG 59.258 47.619 0.00 0.00 34.29 4.85
2514 2637 3.063510 TGAGCAGCAGTAGCAGAAAAT 57.936 42.857 0.00 0.00 45.49 1.82
2515 2638 4.206477 TGAGCAGCAGTAGCAGAAAATA 57.794 40.909 0.00 0.00 45.49 1.40
2516 2639 4.578871 TGAGCAGCAGTAGCAGAAAATAA 58.421 39.130 0.00 0.00 45.49 1.40
2517 2640 4.633126 TGAGCAGCAGTAGCAGAAAATAAG 59.367 41.667 0.00 0.00 45.49 1.73
2590 2720 2.202987 GCATGGCCACTCGAGAGG 60.203 66.667 23.06 23.06 0.00 3.69
2719 2850 4.924187 CCGATCGCCTCCCCCTCT 62.924 72.222 10.32 0.00 0.00 3.69
2721 2852 2.920384 GATCGCCTCCCCCTCTCC 60.920 72.222 0.00 0.00 0.00 3.71
2725 2856 2.445654 GCCTCCCCCTCTCCTCTG 60.446 72.222 0.00 0.00 0.00 3.35
2792 2923 3.083349 CTCCGCCTCCCCATCACA 61.083 66.667 0.00 0.00 0.00 3.58
2820 2955 7.595311 TTTTTCTTTCTTGGTTTCTTTCTGC 57.405 32.000 0.00 0.00 0.00 4.26
2825 2960 5.443185 TTCTTGGTTTCTTTCTGCTGATG 57.557 39.130 0.00 0.00 0.00 3.07
2855 3301 2.174363 TGCTATGAATCGGCTGATGG 57.826 50.000 9.28 0.00 34.24 3.51
2907 3359 2.750350 CCCACTTTCTCGCAGGGT 59.250 61.111 0.00 0.00 34.75 4.34
2912 3372 2.693591 CCACTTTCTCGCAGGGTAGATA 59.306 50.000 0.00 0.00 0.00 1.98
2986 3449 0.247736 ACAGCGAGAGTTAGGGCAAG 59.752 55.000 0.00 0.00 0.00 4.01
2997 3460 0.909610 TAGGGCAAGTGGACAGGGAG 60.910 60.000 0.00 0.00 0.00 4.30
3087 3556 1.014352 CTTATTTTGGGACGGAGCGG 58.986 55.000 0.00 0.00 0.00 5.52
3096 3574 3.151673 GACGGAGCGGCGTATTTGC 62.152 63.158 9.37 0.00 0.00 3.68
3126 3604 5.104817 GGATGGTGATTTGTTCATGGGAAAT 60.105 40.000 0.00 0.00 36.54 2.17
3210 3744 1.521681 GACATACGGCCTCCTGCAC 60.522 63.158 0.00 0.00 43.89 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.910637 AATTTGTAACGAGCAAGTAACGA 57.089 34.783 0.00 0.00 0.00 3.85
2 3 7.672738 AGATAATTTGTAACGAGCAAGTAACG 58.327 34.615 0.00 0.00 0.00 3.18
3 4 9.262472 CAAGATAATTTGTAACGAGCAAGTAAC 57.738 33.333 0.00 0.00 0.00 2.50
4 5 7.960738 GCAAGATAATTTGTAACGAGCAAGTAA 59.039 33.333 0.00 0.00 0.00 2.24
5 6 7.333423 AGCAAGATAATTTGTAACGAGCAAGTA 59.667 33.333 0.00 0.00 0.00 2.24
6 7 6.149474 AGCAAGATAATTTGTAACGAGCAAGT 59.851 34.615 0.00 0.00 0.00 3.16
10 11 6.036735 TGGTAGCAAGATAATTTGTAACGAGC 59.963 38.462 0.00 0.00 0.00 5.03
11 12 7.534085 TGGTAGCAAGATAATTTGTAACGAG 57.466 36.000 0.00 0.00 0.00 4.18
12 13 7.908827 TTGGTAGCAAGATAATTTGTAACGA 57.091 32.000 2.54 0.00 0.00 3.85
13 14 8.234546 AGTTTGGTAGCAAGATAATTTGTAACG 58.765 33.333 7.51 0.00 0.00 3.18
16 17 9.953565 AGTAGTTTGGTAGCAAGATAATTTGTA 57.046 29.630 7.51 0.00 0.00 2.41
17 18 8.863872 AGTAGTTTGGTAGCAAGATAATTTGT 57.136 30.769 7.51 0.00 0.00 2.83
18 19 8.398665 GGAGTAGTTTGGTAGCAAGATAATTTG 58.601 37.037 7.51 0.00 0.00 2.32
19 20 7.280205 CGGAGTAGTTTGGTAGCAAGATAATTT 59.720 37.037 7.51 0.00 0.00 1.82
20 21 6.761714 CGGAGTAGTTTGGTAGCAAGATAATT 59.238 38.462 7.51 0.00 0.00 1.40
21 22 6.281405 CGGAGTAGTTTGGTAGCAAGATAAT 58.719 40.000 7.51 4.42 0.00 1.28
22 23 5.657474 CGGAGTAGTTTGGTAGCAAGATAA 58.343 41.667 7.51 0.00 0.00 1.75
23 24 4.441079 GCGGAGTAGTTTGGTAGCAAGATA 60.441 45.833 7.51 2.49 0.00 1.98
24 25 3.679083 GCGGAGTAGTTTGGTAGCAAGAT 60.679 47.826 7.51 3.44 0.00 2.40
25 26 2.353406 GCGGAGTAGTTTGGTAGCAAGA 60.353 50.000 7.51 0.00 0.00 3.02
26 27 2.000447 GCGGAGTAGTTTGGTAGCAAG 59.000 52.381 7.51 0.00 0.00 4.01
27 28 1.621814 AGCGGAGTAGTTTGGTAGCAA 59.378 47.619 2.54 2.54 0.00 3.91
28 29 1.263356 AGCGGAGTAGTTTGGTAGCA 58.737 50.000 0.00 0.00 0.00 3.49
29 30 2.426381 AGTAGCGGAGTAGTTTGGTAGC 59.574 50.000 0.00 0.00 0.00 3.58
30 31 4.715527 AAGTAGCGGAGTAGTTTGGTAG 57.284 45.455 0.00 0.00 0.00 3.18
31 32 5.009631 TGTAAGTAGCGGAGTAGTTTGGTA 58.990 41.667 0.00 0.00 0.00 3.25
32 33 3.828451 TGTAAGTAGCGGAGTAGTTTGGT 59.172 43.478 0.00 0.00 0.00 3.67
33 34 4.445452 TGTAAGTAGCGGAGTAGTTTGG 57.555 45.455 0.00 0.00 0.00 3.28
34 35 6.963049 AATTGTAAGTAGCGGAGTAGTTTG 57.037 37.500 0.00 0.00 0.00 2.93
35 36 7.156673 TGAAATTGTAAGTAGCGGAGTAGTTT 58.843 34.615 0.00 0.00 0.00 2.66
36 37 6.694447 TGAAATTGTAAGTAGCGGAGTAGTT 58.306 36.000 0.00 0.00 0.00 2.24
37 38 6.276832 TGAAATTGTAAGTAGCGGAGTAGT 57.723 37.500 0.00 0.00 0.00 2.73
38 39 5.232414 GCTGAAATTGTAAGTAGCGGAGTAG 59.768 44.000 0.00 0.00 0.00 2.57
39 40 5.107133 GCTGAAATTGTAAGTAGCGGAGTA 58.893 41.667 0.00 0.00 0.00 2.59
40 41 3.933332 GCTGAAATTGTAAGTAGCGGAGT 59.067 43.478 0.00 0.00 0.00 3.85
41 42 3.932710 TGCTGAAATTGTAAGTAGCGGAG 59.067 43.478 0.00 0.00 34.07 4.63
42 43 3.682858 GTGCTGAAATTGTAAGTAGCGGA 59.317 43.478 0.00 0.00 34.07 5.54
43 44 3.684788 AGTGCTGAAATTGTAAGTAGCGG 59.315 43.478 0.00 0.00 34.07 5.52
44 45 4.928661 AGTGCTGAAATTGTAAGTAGCG 57.071 40.909 0.00 0.00 34.07 4.26
45 46 4.853743 GCAAGTGCTGAAATTGTAAGTAGC 59.146 41.667 0.00 0.00 38.21 3.58
46 47 6.000891 TGCAAGTGCTGAAATTGTAAGTAG 57.999 37.500 4.69 0.00 42.66 2.57
47 48 5.762711 TCTGCAAGTGCTGAAATTGTAAGTA 59.237 36.000 10.07 0.00 44.21 2.24
48 49 4.580167 TCTGCAAGTGCTGAAATTGTAAGT 59.420 37.500 10.07 0.00 44.21 2.24
49 50 5.112220 TCTGCAAGTGCTGAAATTGTAAG 57.888 39.130 10.07 0.00 44.21 2.34
59 60 6.018425 CAGTAAGGTAATATCTGCAAGTGCTG 60.018 42.308 4.69 4.30 42.66 4.41
60 61 6.051717 CAGTAAGGTAATATCTGCAAGTGCT 58.948 40.000 4.69 0.00 42.66 4.40
61 62 6.049149 TCAGTAAGGTAATATCTGCAAGTGC 58.951 40.000 0.00 0.00 42.50 4.40
62 63 8.492673 TTTCAGTAAGGTAATATCTGCAAGTG 57.507 34.615 0.00 0.00 33.76 3.16
63 64 8.947115 GTTTTCAGTAAGGTAATATCTGCAAGT 58.053 33.333 0.00 0.00 33.76 3.16
64 65 9.167311 AGTTTTCAGTAAGGTAATATCTGCAAG 57.833 33.333 0.00 0.00 0.00 4.01
66 67 9.595823 GTAGTTTTCAGTAAGGTAATATCTGCA 57.404 33.333 0.00 0.00 0.00 4.41
67 68 9.819267 AGTAGTTTTCAGTAAGGTAATATCTGC 57.181 33.333 0.00 0.00 0.00 4.26
74 75 9.841295 AATGACAAGTAGTTTTCAGTAAGGTAA 57.159 29.630 5.45 0.00 0.00 2.85
75 76 9.841295 AAATGACAAGTAGTTTTCAGTAAGGTA 57.159 29.630 5.45 0.00 0.00 3.08
76 77 8.747538 AAATGACAAGTAGTTTTCAGTAAGGT 57.252 30.769 5.45 0.00 0.00 3.50
77 78 8.290325 GGAAATGACAAGTAGTTTTCAGTAAGG 58.710 37.037 5.45 0.00 31.52 2.69
78 79 9.057089 AGGAAATGACAAGTAGTTTTCAGTAAG 57.943 33.333 5.45 0.00 31.52 2.34
79 80 8.974060 AGGAAATGACAAGTAGTTTTCAGTAA 57.026 30.769 5.45 0.00 31.52 2.24
80 81 8.974060 AAGGAAATGACAAGTAGTTTTCAGTA 57.026 30.769 5.45 0.00 31.52 2.74
81 82 7.775561 AGAAGGAAATGACAAGTAGTTTTCAGT 59.224 33.333 5.45 0.00 31.52 3.41
82 83 8.072567 CAGAAGGAAATGACAAGTAGTTTTCAG 58.927 37.037 5.45 0.00 31.52 3.02
83 84 7.468631 GCAGAAGGAAATGACAAGTAGTTTTCA 60.469 37.037 1.73 1.73 31.52 2.69
84 85 6.858478 GCAGAAGGAAATGACAAGTAGTTTTC 59.142 38.462 0.00 0.00 0.00 2.29
85 86 6.547510 AGCAGAAGGAAATGACAAGTAGTTTT 59.452 34.615 0.00 0.00 0.00 2.43
86 87 6.064717 AGCAGAAGGAAATGACAAGTAGTTT 58.935 36.000 0.00 0.00 0.00 2.66
87 88 5.625150 AGCAGAAGGAAATGACAAGTAGTT 58.375 37.500 0.00 0.00 0.00 2.24
88 89 5.234466 AGCAGAAGGAAATGACAAGTAGT 57.766 39.130 0.00 0.00 0.00 2.73
89 90 4.633565 GGAGCAGAAGGAAATGACAAGTAG 59.366 45.833 0.00 0.00 0.00 2.57
90 91 4.287067 AGGAGCAGAAGGAAATGACAAGTA 59.713 41.667 0.00 0.00 0.00 2.24
91 92 3.073650 AGGAGCAGAAGGAAATGACAAGT 59.926 43.478 0.00 0.00 0.00 3.16
92 93 3.683802 AGGAGCAGAAGGAAATGACAAG 58.316 45.455 0.00 0.00 0.00 3.16
93 94 3.679389 GAGGAGCAGAAGGAAATGACAA 58.321 45.455 0.00 0.00 0.00 3.18
94 95 2.354103 CGAGGAGCAGAAGGAAATGACA 60.354 50.000 0.00 0.00 0.00 3.58
95 96 2.275318 CGAGGAGCAGAAGGAAATGAC 58.725 52.381 0.00 0.00 0.00 3.06
96 97 1.902508 ACGAGGAGCAGAAGGAAATGA 59.097 47.619 0.00 0.00 0.00 2.57
97 98 2.393271 ACGAGGAGCAGAAGGAAATG 57.607 50.000 0.00 0.00 0.00 2.32
98 99 2.616510 CCAACGAGGAGCAGAAGGAAAT 60.617 50.000 0.00 0.00 41.22 2.17
99 100 1.270839 CCAACGAGGAGCAGAAGGAAA 60.271 52.381 0.00 0.00 41.22 3.13
100 101 0.321671 CCAACGAGGAGCAGAAGGAA 59.678 55.000 0.00 0.00 41.22 3.36
101 102 1.544825 CCCAACGAGGAGCAGAAGGA 61.545 60.000 0.00 0.00 41.22 3.36
102 103 1.078848 CCCAACGAGGAGCAGAAGG 60.079 63.158 0.00 0.00 41.22 3.46
103 104 0.035458 AACCCAACGAGGAGCAGAAG 59.965 55.000 0.00 0.00 41.22 2.85
104 105 0.034896 GAACCCAACGAGGAGCAGAA 59.965 55.000 0.00 0.00 41.22 3.02
105 106 1.671742 GAACCCAACGAGGAGCAGA 59.328 57.895 0.00 0.00 41.22 4.26
106 107 1.738099 CGAACCCAACGAGGAGCAG 60.738 63.158 0.00 0.00 41.22 4.24
107 108 2.204461 TCGAACCCAACGAGGAGCA 61.204 57.895 0.00 0.00 41.22 4.26
108 109 1.737008 GTCGAACCCAACGAGGAGC 60.737 63.158 0.00 0.00 41.22 4.70
109 110 0.666577 GTGTCGAACCCAACGAGGAG 60.667 60.000 0.00 0.00 41.22 3.69
110 111 1.111116 AGTGTCGAACCCAACGAGGA 61.111 55.000 0.00 0.00 41.22 3.71
111 112 0.666577 GAGTGTCGAACCCAACGAGG 60.667 60.000 0.00 0.00 40.37 4.63
112 113 0.314302 AGAGTGTCGAACCCAACGAG 59.686 55.000 0.00 0.00 40.37 4.18
113 114 0.748450 AAGAGTGTCGAACCCAACGA 59.252 50.000 0.00 0.00 37.43 3.85
114 115 2.056577 GTAAGAGTGTCGAACCCAACG 58.943 52.381 0.00 0.00 0.00 4.10
115 116 3.382048 AGTAAGAGTGTCGAACCCAAC 57.618 47.619 0.00 0.00 0.00 3.77
116 117 5.620654 CGATAAGTAAGAGTGTCGAACCCAA 60.621 44.000 0.00 0.00 0.00 4.12
117 118 4.142534 CGATAAGTAAGAGTGTCGAACCCA 60.143 45.833 0.00 0.00 0.00 4.51
118 119 4.095483 TCGATAAGTAAGAGTGTCGAACCC 59.905 45.833 0.00 0.00 35.48 4.11
119 120 5.227238 TCGATAAGTAAGAGTGTCGAACC 57.773 43.478 0.00 0.00 35.48 3.62
120 121 7.536622 TCTTTTCGATAAGTAAGAGTGTCGAAC 59.463 37.037 14.15 0.00 44.53 3.95
121 122 7.587629 TCTTTTCGATAAGTAAGAGTGTCGAA 58.412 34.615 14.15 4.17 43.60 3.71
122 123 7.137490 TCTTTTCGATAAGTAAGAGTGTCGA 57.863 36.000 14.15 0.00 36.46 4.20
123 124 6.021311 GCTCTTTTCGATAAGTAAGAGTGTCG 60.021 42.308 14.15 0.00 43.39 4.35
124 125 7.030768 AGCTCTTTTCGATAAGTAAGAGTGTC 58.969 38.462 14.15 3.85 43.39 3.67
125 126 6.926313 AGCTCTTTTCGATAAGTAAGAGTGT 58.074 36.000 14.15 4.97 43.39 3.55
126 127 7.968956 TGTAGCTCTTTTCGATAAGTAAGAGTG 59.031 37.037 14.15 0.00 43.39 3.51
127 128 8.053026 TGTAGCTCTTTTCGATAAGTAAGAGT 57.947 34.615 14.15 8.01 43.39 3.24
128 129 8.912787 TTGTAGCTCTTTTCGATAAGTAAGAG 57.087 34.615 14.15 13.56 43.99 2.85
129 130 9.871238 AATTGTAGCTCTTTTCGATAAGTAAGA 57.129 29.630 14.15 5.28 0.00 2.10
130 131 9.907576 CAATTGTAGCTCTTTTCGATAAGTAAG 57.092 33.333 14.15 7.51 0.00 2.34
131 132 9.647797 TCAATTGTAGCTCTTTTCGATAAGTAA 57.352 29.630 14.15 0.00 0.00 2.24
132 133 9.817809 ATCAATTGTAGCTCTTTTCGATAAGTA 57.182 29.630 14.15 0.00 0.00 2.24
133 134 8.723942 ATCAATTGTAGCTCTTTTCGATAAGT 57.276 30.769 14.15 0.00 0.00 2.24
134 135 8.279103 GGATCAATTGTAGCTCTTTTCGATAAG 58.721 37.037 9.11 9.11 0.00 1.73
135 136 7.226720 GGGATCAATTGTAGCTCTTTTCGATAA 59.773 37.037 5.13 0.00 0.00 1.75
136 137 6.706270 GGGATCAATTGTAGCTCTTTTCGATA 59.294 38.462 5.13 0.00 0.00 2.92
137 138 5.529060 GGGATCAATTGTAGCTCTTTTCGAT 59.471 40.000 5.13 0.00 0.00 3.59
138 139 4.876107 GGGATCAATTGTAGCTCTTTTCGA 59.124 41.667 5.13 0.00 0.00 3.71
139 140 4.035675 GGGGATCAATTGTAGCTCTTTTCG 59.964 45.833 5.13 0.00 0.00 3.46
140 141 5.196695 AGGGGATCAATTGTAGCTCTTTTC 58.803 41.667 5.13 0.00 0.00 2.29
141 142 5.198602 AGGGGATCAATTGTAGCTCTTTT 57.801 39.130 5.13 0.00 0.00 2.27
142 143 4.870021 AGGGGATCAATTGTAGCTCTTT 57.130 40.909 5.13 0.00 0.00 2.52
143 144 6.789959 AGTATAGGGGATCAATTGTAGCTCTT 59.210 38.462 5.13 0.00 0.00 2.85
144 145 6.326970 AGTATAGGGGATCAATTGTAGCTCT 58.673 40.000 5.13 2.52 0.00 4.09
145 146 6.613153 AGTATAGGGGATCAATTGTAGCTC 57.387 41.667 5.13 0.00 0.00 4.09
146 147 6.330250 ACAAGTATAGGGGATCAATTGTAGCT 59.670 38.462 5.13 0.00 0.00 3.32
147 148 6.428159 CACAAGTATAGGGGATCAATTGTAGC 59.572 42.308 5.13 0.00 0.00 3.58
148 149 6.936900 CCACAAGTATAGGGGATCAATTGTAG 59.063 42.308 5.13 0.00 0.00 2.74
149 150 6.183361 CCCACAAGTATAGGGGATCAATTGTA 60.183 42.308 5.13 0.00 43.57 2.41
150 151 5.399038 CCCACAAGTATAGGGGATCAATTGT 60.399 44.000 5.13 0.00 43.57 2.71
151 152 5.072741 CCCACAAGTATAGGGGATCAATTG 58.927 45.833 0.00 0.00 43.57 2.32
152 153 5.324832 CCCACAAGTATAGGGGATCAATT 57.675 43.478 0.00 0.00 43.57 2.32
161 162 2.159142 GGTGACGACCCACAAGTATAGG 60.159 54.545 0.00 0.00 38.74 2.57
162 163 3.160777 GGTGACGACCCACAAGTATAG 57.839 52.381 0.00 0.00 38.74 1.31
173 174 1.961277 CAGTTGCTGGGTGACGACC 60.961 63.158 0.00 0.00 42.27 4.79
174 175 2.607892 GCAGTTGCTGGGTGACGAC 61.608 63.158 0.00 0.00 38.21 4.34
175 176 2.280797 GCAGTTGCTGGGTGACGA 60.281 61.111 0.00 0.00 38.21 4.20
176 177 3.716006 CGCAGTTGCTGGGTGACG 61.716 66.667 2.29 0.00 39.17 4.35
177 178 3.357079 CCGCAGTTGCTGGGTGAC 61.357 66.667 11.30 0.00 41.84 3.67
178 179 3.535629 CTCCGCAGTTGCTGGGTGA 62.536 63.158 11.30 7.83 41.84 4.02
179 180 3.052082 CTCCGCAGTTGCTGGGTG 61.052 66.667 11.30 4.56 41.84 4.61
180 181 4.335647 CCTCCGCAGTTGCTGGGT 62.336 66.667 11.30 0.00 41.84 4.51
193 194 1.878656 CGTGGAGATATCGGGCCTCC 61.879 65.000 0.84 0.00 45.07 4.30
194 195 1.587054 CGTGGAGATATCGGGCCTC 59.413 63.158 0.84 0.00 0.00 4.70
195 196 2.574955 GCGTGGAGATATCGGGCCT 61.575 63.158 0.84 0.00 0.00 5.19
196 197 2.048127 GCGTGGAGATATCGGGCC 60.048 66.667 0.00 0.00 0.00 5.80
197 198 2.048127 GGCGTGGAGATATCGGGC 60.048 66.667 0.00 0.00 0.00 6.13
198 199 1.290324 CAGGCGTGGAGATATCGGG 59.710 63.158 0.00 0.00 0.00 5.14
199 200 1.373497 GCAGGCGTGGAGATATCGG 60.373 63.158 8.72 0.00 0.00 4.18
200 201 1.373497 GGCAGGCGTGGAGATATCG 60.373 63.158 8.72 0.00 0.00 2.92
201 202 0.320247 CTGGCAGGCGTGGAGATATC 60.320 60.000 6.61 0.00 0.00 1.63
202 203 1.750930 CTGGCAGGCGTGGAGATAT 59.249 57.895 6.61 0.00 0.00 1.63
203 204 3.094062 GCTGGCAGGCGTGGAGATA 62.094 63.158 17.64 0.00 0.00 1.98
204 205 4.479993 GCTGGCAGGCGTGGAGAT 62.480 66.667 17.64 0.00 0.00 2.75
215 216 4.648626 GGTCTGTGGCTGCTGGCA 62.649 66.667 16.03 16.03 46.87 4.92
216 217 4.648626 TGGTCTGTGGCTGCTGGC 62.649 66.667 10.40 10.40 40.90 4.85
217 218 1.970114 CTTGGTCTGTGGCTGCTGG 60.970 63.158 0.00 0.00 0.00 4.85
218 219 2.623915 GCTTGGTCTGTGGCTGCTG 61.624 63.158 0.00 0.00 0.00 4.41
219 220 2.282040 GCTTGGTCTGTGGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
220 221 3.368571 GGCTTGGTCTGTGGCTGC 61.369 66.667 0.00 0.00 0.00 5.25
221 222 1.303888 ATGGCTTGGTCTGTGGCTG 60.304 57.895 0.00 0.00 0.00 4.85
222 223 1.303888 CATGGCTTGGTCTGTGGCT 60.304 57.895 0.00 0.00 0.00 4.75
223 224 1.589716 GACATGGCTTGGTCTGTGGC 61.590 60.000 5.31 0.00 0.00 5.01
224 225 1.300971 CGACATGGCTTGGTCTGTGG 61.301 60.000 0.00 0.00 31.88 4.17
225 226 1.300971 CCGACATGGCTTGGTCTGTG 61.301 60.000 0.00 0.00 31.88 3.66
226 227 1.003355 CCGACATGGCTTGGTCTGT 60.003 57.895 0.00 0.00 31.88 3.41
227 228 1.746615 CCCGACATGGCTTGGTCTG 60.747 63.158 0.00 0.00 35.87 3.51
228 229 2.671070 CCCGACATGGCTTGGTCT 59.329 61.111 0.00 0.00 35.87 3.85
236 237 0.107508 ACTTGATCTGCCCGACATGG 60.108 55.000 0.00 0.00 37.55 3.66
237 238 1.667724 GAACTTGATCTGCCCGACATG 59.332 52.381 0.00 0.00 0.00 3.21
238 239 1.278985 TGAACTTGATCTGCCCGACAT 59.721 47.619 0.00 0.00 0.00 3.06
239 240 0.684535 TGAACTTGATCTGCCCGACA 59.315 50.000 0.00 0.00 0.00 4.35
240 241 1.734465 CTTGAACTTGATCTGCCCGAC 59.266 52.381 0.00 0.00 0.00 4.79
241 242 1.623311 TCTTGAACTTGATCTGCCCGA 59.377 47.619 0.00 0.00 0.00 5.14
242 243 2.005451 CTCTTGAACTTGATCTGCCCG 58.995 52.381 0.00 0.00 0.00 6.13
243 244 1.742268 GCTCTTGAACTTGATCTGCCC 59.258 52.381 0.00 0.00 0.00 5.36
244 245 1.396301 CGCTCTTGAACTTGATCTGCC 59.604 52.381 0.00 0.00 0.00 4.85
245 246 1.396301 CCGCTCTTGAACTTGATCTGC 59.604 52.381 0.00 0.00 0.00 4.26
246 247 2.964740 TCCGCTCTTGAACTTGATCTG 58.035 47.619 0.00 0.00 0.00 2.90
247 248 3.902881 ATCCGCTCTTGAACTTGATCT 57.097 42.857 0.00 0.00 0.00 2.75
248 249 4.742659 GTCTATCCGCTCTTGAACTTGATC 59.257 45.833 0.00 0.00 0.00 2.92
249 250 4.442192 GGTCTATCCGCTCTTGAACTTGAT 60.442 45.833 0.00 0.00 0.00 2.57
250 251 3.119101 GGTCTATCCGCTCTTGAACTTGA 60.119 47.826 0.00 0.00 0.00 3.02
251 252 3.190874 GGTCTATCCGCTCTTGAACTTG 58.809 50.000 0.00 0.00 0.00 3.16
252 253 2.168728 GGGTCTATCCGCTCTTGAACTT 59.831 50.000 0.00 0.00 37.00 2.66
253 254 1.757699 GGGTCTATCCGCTCTTGAACT 59.242 52.381 0.00 0.00 37.00 3.01
254 255 1.536284 CGGGTCTATCCGCTCTTGAAC 60.536 57.143 0.00 0.00 43.71 3.18
255 256 0.744874 CGGGTCTATCCGCTCTTGAA 59.255 55.000 0.00 0.00 43.71 2.69
256 257 2.415825 CGGGTCTATCCGCTCTTGA 58.584 57.895 0.00 0.00 43.71 3.02
264 265 0.178929 ATGGGGTCTCGGGTCTATCC 60.179 60.000 0.00 0.00 0.00 2.59
265 266 0.969894 CATGGGGTCTCGGGTCTATC 59.030 60.000 0.00 0.00 0.00 2.08
266 267 1.122019 GCATGGGGTCTCGGGTCTAT 61.122 60.000 0.00 0.00 0.00 1.98
267 268 1.760875 GCATGGGGTCTCGGGTCTA 60.761 63.158 0.00 0.00 0.00 2.59
268 269 3.083997 GCATGGGGTCTCGGGTCT 61.084 66.667 0.00 0.00 0.00 3.85
269 270 4.176752 GGCATGGGGTCTCGGGTC 62.177 72.222 0.00 0.00 0.00 4.46
271 272 3.482232 GATGGCATGGGGTCTCGGG 62.482 68.421 3.81 0.00 0.00 5.14
272 273 2.111878 GATGGCATGGGGTCTCGG 59.888 66.667 3.81 0.00 0.00 4.63
273 274 2.280389 CGATGGCATGGGGTCTCG 60.280 66.667 3.81 0.00 0.00 4.04
274 275 1.097547 CAACGATGGCATGGGGTCTC 61.098 60.000 14.18 0.00 0.00 3.36
275 276 1.077501 CAACGATGGCATGGGGTCT 60.078 57.895 14.18 0.00 0.00 3.85
276 277 2.774799 GCAACGATGGCATGGGGTC 61.775 63.158 14.18 0.00 0.00 4.46
277 278 2.755469 GCAACGATGGCATGGGGT 60.755 61.111 14.18 2.21 0.00 4.95
340 341 2.724708 GCGACTGCTCTGCTCGTTG 61.725 63.158 0.00 0.00 38.39 4.10
360 361 0.739813 GTGAGGTGCGGCGAAGTTAT 60.740 55.000 12.98 0.00 0.00 1.89
415 418 1.628846 GGTGCCACTTTCTTCTCCCTA 59.371 52.381 0.00 0.00 0.00 3.53
425 428 1.674057 CTCTCCTCGGTGCCACTTT 59.326 57.895 0.00 0.00 0.00 2.66
426 429 2.286523 CCTCTCCTCGGTGCCACTT 61.287 63.158 0.00 0.00 0.00 3.16
479 483 1.502640 CTCGTCGAGGGTCACTGTC 59.497 63.158 14.68 0.00 0.00 3.51
508 512 4.715130 CCCTCCCCTCCCGACACA 62.715 72.222 0.00 0.00 0.00 3.72
513 517 2.767073 GTTACCCCTCCCCTCCCG 60.767 72.222 0.00 0.00 0.00 5.14
594 604 4.082300 TCAATCATTGTTCCCGTTCCAATG 60.082 41.667 0.00 0.00 44.23 2.82
702 720 1.077787 GCGGATTCCATGGGTGTCA 60.078 57.895 13.02 0.00 0.00 3.58
720 738 2.793946 GCGCTATGCACACAAGGG 59.206 61.111 0.00 0.00 45.45 3.95
827 864 8.734386 TCTTTTATTTTCCTGATTGAAGAGAGC 58.266 33.333 0.00 0.00 0.00 4.09
983 1021 1.001393 CTTAAAGAAGGGCCGGGCA 60.001 57.895 30.95 3.67 0.00 5.36
1036 1075 0.926293 AGAGGAGTGAGAGAGAGGGG 59.074 60.000 0.00 0.00 0.00 4.79
1038 1077 1.209504 ACGAGAGGAGTGAGAGAGAGG 59.790 57.143 0.00 0.00 0.00 3.69
1048 1087 0.253610 ACGAGGATGACGAGAGGAGT 59.746 55.000 0.00 0.00 34.70 3.85
1052 1091 2.285083 AGAAGACGAGGATGACGAGAG 58.715 52.381 0.00 0.00 34.70 3.20
1053 1092 2.404923 AGAAGACGAGGATGACGAGA 57.595 50.000 0.00 0.00 34.70 4.04
1095 1141 1.761784 AGCTAGCTGGTGAATGAGAGG 59.238 52.381 18.57 0.00 0.00 3.69
1097 1143 2.833943 TCAAGCTAGCTGGTGAATGAGA 59.166 45.455 20.16 2.83 0.00 3.27
1099 1145 2.679059 GCTCAAGCTAGCTGGTGAATGA 60.679 50.000 22.58 17.42 39.50 2.57
1211 1269 3.369892 CCTGGACCTTCGATCTGAACATT 60.370 47.826 0.00 0.00 31.87 2.71
1244 1302 0.854039 TGGACCTGGACCTCCTCCTA 60.854 60.000 16.02 0.00 40.26 2.94
1293 1363 2.358737 CGTGGACAGGTTGCCTCC 60.359 66.667 0.00 0.00 0.00 4.30
1294 1364 2.358737 CCGTGGACAGGTTGCCTC 60.359 66.667 0.00 0.00 0.00 4.70
1295 1365 4.643387 GCCGTGGACAGGTTGCCT 62.643 66.667 0.00 0.00 0.00 4.75
1619 1704 1.627550 GAACGTTCTTCCTCCGCTGC 61.628 60.000 20.97 0.00 0.00 5.25
1838 1923 2.809174 TCGCCGAAGATGTGCACG 60.809 61.111 13.13 0.00 0.00 5.34
1950 2041 4.248842 TATCGGTGGCGGGCATGG 62.249 66.667 7.75 2.89 0.00 3.66
1952 2043 1.816863 CTACTATCGGTGGCGGGCAT 61.817 60.000 7.75 0.00 0.00 4.40
1953 2044 2.442458 TACTATCGGTGGCGGGCA 60.442 61.111 0.00 0.00 0.00 5.36
1954 2045 1.174712 TACTACTATCGGTGGCGGGC 61.175 60.000 0.00 0.00 0.00 6.13
1955 2046 0.595095 GTACTACTATCGGTGGCGGG 59.405 60.000 0.00 0.00 0.00 6.13
1956 2047 1.602311 AGTACTACTATCGGTGGCGG 58.398 55.000 0.00 0.00 0.00 6.13
1957 2048 2.481952 GGTAGTACTACTATCGGTGGCG 59.518 54.545 27.71 0.00 32.65 5.69
1972 2063 1.961394 GCATCATGGACGGAGGTAGTA 59.039 52.381 0.00 0.00 0.00 1.82
1974 2065 0.319040 CGCATCATGGACGGAGGTAG 60.319 60.000 0.00 0.00 0.00 3.18
1975 2066 1.040893 ACGCATCATGGACGGAGGTA 61.041 55.000 7.62 0.00 0.00 3.08
1976 2067 2.359169 ACGCATCATGGACGGAGGT 61.359 57.895 7.62 0.00 0.00 3.85
1977 2068 1.884464 CACGCATCATGGACGGAGG 60.884 63.158 7.62 0.00 0.00 4.30
1978 2069 2.528743 GCACGCATCATGGACGGAG 61.529 63.158 7.62 2.12 0.00 4.63
1982 2073 2.400798 CACGCACGCATCATGGAC 59.599 61.111 0.00 0.00 0.00 4.02
2018 2117 3.562973 ACTGACAGCATCAACAAGACTTG 59.437 43.478 13.77 13.77 36.69 3.16
2161 2264 2.293122 GCTCTGGTACAAACATGTTGCA 59.707 45.455 12.82 0.00 38.70 4.08
2162 2265 2.293122 TGCTCTGGTACAAACATGTTGC 59.707 45.455 12.82 8.26 38.70 4.17
2208 2311 8.081208 ACGATCAATTCATTCATAAGCTACTG 57.919 34.615 0.00 0.00 0.00 2.74
2240 2346 2.053627 GCAACCAAGAAATTCAGTGCG 58.946 47.619 0.00 0.00 0.00 5.34
2286 2392 9.015367 TGTCATTCAGAAGCTACTATACTATCC 57.985 37.037 0.00 0.00 0.00 2.59
2290 2396 8.470657 TCATGTCATTCAGAAGCTACTATACT 57.529 34.615 0.00 0.00 0.00 2.12
2292 2398 7.862873 CGTTCATGTCATTCAGAAGCTACTATA 59.137 37.037 0.00 0.00 0.00 1.31
2293 2399 6.699204 CGTTCATGTCATTCAGAAGCTACTAT 59.301 38.462 0.00 0.00 0.00 2.12
2295 2401 4.867047 CGTTCATGTCATTCAGAAGCTACT 59.133 41.667 0.00 0.00 0.00 2.57
2296 2402 4.627467 ACGTTCATGTCATTCAGAAGCTAC 59.373 41.667 0.00 0.00 0.00 3.58
2297 2403 4.820897 ACGTTCATGTCATTCAGAAGCTA 58.179 39.130 0.00 0.00 0.00 3.32
2298 2404 3.668447 ACGTTCATGTCATTCAGAAGCT 58.332 40.909 0.00 0.00 0.00 3.74
2299 2405 4.410492 AACGTTCATGTCATTCAGAAGC 57.590 40.909 0.00 0.00 0.00 3.86
2350 2456 2.361757 AGATTCTCATCGCAGACTCTGG 59.638 50.000 8.17 0.00 42.51 3.86
2356 2462 3.525537 GTTCCAAGATTCTCATCGCAGA 58.474 45.455 0.00 0.00 45.75 4.26
2360 2466 5.814783 GAAATGGTTCCAAGATTCTCATCG 58.185 41.667 0.00 0.00 34.17 3.84
2409 2515 1.948145 CTGGCTCTGGCTTGATTGATC 59.052 52.381 0.00 0.00 38.73 2.92
2419 2525 4.792804 GAGTGGCCTGGCTCTGGC 62.793 72.222 19.68 12.63 45.73 4.85
2486 2606 2.771089 CTACTGCTGCTCAAGAAACCA 58.229 47.619 0.00 0.00 0.00 3.67
2579 2709 0.455410 CTCTCAAGCCTCTCGAGTGG 59.545 60.000 25.78 25.78 0.00 4.00
2678 2808 2.808567 CGGATCAGATGAGACGAGAGGA 60.809 54.545 0.00 0.00 31.57 3.71
2719 2850 2.771943 ACTGAAACACAAGTCCAGAGGA 59.228 45.455 0.00 0.00 0.00 3.71
2721 2852 4.878397 AGAAACTGAAACACAAGTCCAGAG 59.122 41.667 0.00 0.00 0.00 3.35
2725 2856 6.033513 CGAAAAAGAAACTGAAACACAAGTCC 59.966 38.462 0.00 0.00 0.00 3.85
2855 3301 4.796495 GATGCCCACCACGGTCCC 62.796 72.222 0.00 0.00 0.00 4.46
2907 3359 8.004801 TCACAACCCACTTGATCTATCTATCTA 58.995 37.037 0.00 0.00 33.59 1.98
2912 3372 5.485353 TCTTCACAACCCACTTGATCTATCT 59.515 40.000 0.00 0.00 33.59 1.98
2964 3424 0.461961 GCCCTAACTCTCGCTGTCAT 59.538 55.000 0.00 0.00 0.00 3.06
2986 3449 2.537143 TCCTCTAAACTCCCTGTCCAC 58.463 52.381 0.00 0.00 0.00 4.02
2997 3460 6.738832 AACCGAAGCTAAAATCCTCTAAAC 57.261 37.500 0.00 0.00 0.00 2.01
3087 3556 2.358898 ACCATCCAATCAGCAAATACGC 59.641 45.455 0.00 0.00 0.00 4.42
3096 3574 5.648178 TGAACAAATCACCATCCAATCAG 57.352 39.130 0.00 0.00 31.50 2.90
3153 3632 6.537453 ACTTGAGTTCTGCTACATATGACT 57.463 37.500 10.38 0.00 0.00 3.41
3210 3744 1.586154 GAGGGTTGCGTTGTGGATGG 61.586 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.