Multiple sequence alignment - TraesCS5D01G394200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G394200 chr5D 100.000 4567 0 0 1 4567 462086242 462090808 0.000000e+00 8434
1 TraesCS5D01G394200 chr5B 94.195 2136 73 21 252 2342 568414755 568416884 0.000000e+00 3210
2 TraesCS5D01G394200 chr5B 94.507 1766 73 13 2336 4092 568417096 568418846 0.000000e+00 2702
3 TraesCS5D01G394200 chr5B 94.937 237 11 1 1 236 568414472 568414708 2.010000e-98 370
4 TraesCS5D01G394200 chr5B 79.554 538 41 22 4098 4567 568418988 568419524 2.050000e-83 320
5 TraesCS5D01G394200 chr5A 92.966 1976 99 19 2354 4298 582396908 582398874 0.000000e+00 2843
6 TraesCS5D01G394200 chr5A 93.092 1549 72 12 844 2362 582395188 582396731 0.000000e+00 2235
7 TraesCS5D01G394200 chr5A 93.738 527 24 3 255 781 582394661 582395178 0.000000e+00 782
8 TraesCS5D01G394200 chr5A 90.942 276 12 6 4300 4567 582398908 582399178 4.340000e-95 359
9 TraesCS5D01G394200 chr5A 94.093 237 10 2 1 234 582394376 582394611 1.560000e-94 357
10 TraesCS5D01G394200 chr3B 82.286 350 34 11 4243 4567 750434718 750435064 1.250000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G394200 chr5D 462086242 462090808 4566 False 8434.0 8434 100.00000 1 4567 1 chr5D.!!$F1 4566
1 TraesCS5D01G394200 chr5B 568414472 568419524 5052 False 1650.5 3210 90.79825 1 4567 4 chr5B.!!$F1 4566
2 TraesCS5D01G394200 chr5A 582394376 582399178 4802 False 1315.2 2843 92.96620 1 4567 5 chr5A.!!$F1 4566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 805 0.112412 ATTTTGCTTCCGAGGTGGGT 59.888 50.0 0.00 0.0 38.76 4.51 F
831 879 0.755698 ACGAGCGTCCCAGTCCATAT 60.756 55.0 0.00 0.0 0.00 1.78 F
2130 2204 0.953727 TAGCAATGCATCAATCGCCC 59.046 50.0 8.35 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 2244 0.179129 ACGCAATTAAGCATGCTGGC 60.179 50.0 23.48 17.95 40.39 4.85 R
2414 2896 2.409948 AAGCATCCCTGACAGCTAAC 57.590 50.0 0.00 0.00 36.07 2.34 R
3908 4410 0.178767 CATCTTCCTCGATGTGGCCA 59.821 55.0 0.00 0.00 36.80 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 4.997905 ATCTGATTTATTCGTGCCATCG 57.002 40.909 0.00 0.00 0.00 3.84
156 160 4.994907 ATGACATGGTCAATTGGTCATG 57.005 40.909 25.90 25.90 45.96 3.07
165 169 8.853126 CATGGTCAATTGGTCATGTCTAATTAT 58.147 33.333 22.42 2.67 34.12 1.28
220 225 3.164268 CCATTTCCCCAGACAATTGACA 58.836 45.455 13.59 0.00 0.00 3.58
236 241 0.392998 GACACATTGGCTGACCCGAT 60.393 55.000 0.00 0.00 38.31 4.18
237 242 0.392998 ACACATTGGCTGACCCGATC 60.393 55.000 0.00 0.00 35.36 3.69
239 244 1.889105 CATTGGCTGACCCGATCGG 60.889 63.158 27.65 27.65 35.36 4.18
244 249 3.822192 CTGACCCGATCGGCGACA 61.822 66.667 29.12 23.46 44.57 4.35
246 251 3.823330 GACCCGATCGGCGACACT 61.823 66.667 29.12 5.94 44.57 3.55
249 254 0.535780 ACCCGATCGGCGACACTATA 60.536 55.000 29.12 0.00 44.57 1.31
264 300 0.921347 CTATAACGCCGCATATCGCC 59.079 55.000 0.00 0.00 37.30 5.54
397 434 2.268076 CCAGGAACCCAACAAGCCG 61.268 63.158 0.00 0.00 0.00 5.52
483 520 2.392974 AACCGCCATTTCGCCGTAC 61.393 57.895 0.00 0.00 0.00 3.67
611 653 2.606519 TGGGGTGGAAGACGGAGG 60.607 66.667 0.00 0.00 0.00 4.30
745 787 4.615815 GCATCTCGCTCGGCCCAT 62.616 66.667 0.00 0.00 37.77 4.00
759 801 1.250840 GCCCATTTTGCTTCCGAGGT 61.251 55.000 0.00 0.00 0.00 3.85
763 805 0.112412 ATTTTGCTTCCGAGGTGGGT 59.888 50.000 0.00 0.00 38.76 4.51
798 840 2.565645 CCTCCAGCCCGTATCCGAG 61.566 68.421 0.00 0.00 35.63 4.63
831 879 0.755698 ACGAGCGTCCCAGTCCATAT 60.756 55.000 0.00 0.00 0.00 1.78
1047 1098 2.860735 CAAATCTCGTGATTCCTCCGTC 59.139 50.000 12.73 0.00 41.62 4.79
1065 1116 0.955905 TCGTTTGCTTAAGGGTTGGC 59.044 50.000 4.29 0.00 0.00 4.52
1244 1295 2.168521 TCCCCTTCTTACTGATCTTGCG 59.831 50.000 0.00 0.00 0.00 4.85
1331 1383 4.151121 TCAAAAAGAATGTGCTGATGGGA 58.849 39.130 0.00 0.00 0.00 4.37
1397 1449 2.007360 CTGCTGCTCAAGTAGGAGTG 57.993 55.000 8.18 0.00 45.10 3.51
1427 1479 6.466308 TCACAATGTCGAATAGTTTCACTG 57.534 37.500 0.00 0.00 0.00 3.66
1460 1512 7.586300 CCACGAAAATAAGTATTAATCCTTGCG 59.414 37.037 3.68 3.09 32.17 4.85
1473 1525 0.954452 CCTTGCGTTTGGAGCTTCTT 59.046 50.000 0.00 0.00 35.28 2.52
1673 1725 1.482593 AGAAGGAGGCACTGATTACGG 59.517 52.381 0.00 0.00 41.55 4.02
1923 1975 1.879372 GCTGTGGAGCATGAGAACACA 60.879 52.381 0.00 4.88 45.46 3.72
1996 2048 1.640917 TGAGGTACCCTGTTGTCTCC 58.359 55.000 8.74 0.00 31.76 3.71
2021 2073 7.606456 CCTTTTACTATTGCTAAGACTTCACCA 59.394 37.037 0.00 0.00 0.00 4.17
2033 2085 5.304686 AGACTTCACCATTCCTGTACAAA 57.695 39.130 0.00 0.00 0.00 2.83
2058 2132 8.492673 ACTATCGCAAATTGAAGATTGTAAGA 57.507 30.769 13.42 0.00 29.98 2.10
2060 2134 9.773328 CTATCGCAAATTGAAGATTGTAAGAAA 57.227 29.630 9.03 0.00 0.00 2.52
2077 2151 4.929146 AGAAACTGTTAGGCCCACTAAT 57.071 40.909 0.00 0.00 43.20 1.73
2082 2156 6.515512 AACTGTTAGGCCCACTAATATGAT 57.484 37.500 0.00 0.00 43.20 2.45
2092 2166 8.227507 AGGCCCACTAATATGATACAGAAAAAT 58.772 33.333 0.00 0.00 0.00 1.82
2093 2167 9.515226 GGCCCACTAATATGATACAGAAAAATA 57.485 33.333 0.00 0.00 0.00 1.40
2122 2196 3.273434 TCTCACCTGTTAGCAATGCATC 58.727 45.455 8.35 0.00 0.00 3.91
2123 2197 3.011818 CTCACCTGTTAGCAATGCATCA 58.988 45.455 8.35 2.46 0.00 3.07
2124 2198 3.419943 TCACCTGTTAGCAATGCATCAA 58.580 40.909 8.35 0.00 0.00 2.57
2127 2201 3.065786 ACCTGTTAGCAATGCATCAATCG 59.934 43.478 8.35 0.00 0.00 3.34
2129 2203 2.223548 TGTTAGCAATGCATCAATCGCC 60.224 45.455 8.35 0.00 0.00 5.54
2130 2204 0.953727 TAGCAATGCATCAATCGCCC 59.046 50.000 8.35 0.00 0.00 6.13
2131 2205 1.659335 GCAATGCATCAATCGCCCG 60.659 57.895 0.00 0.00 0.00 6.13
2132 2206 2.024117 CAATGCATCAATCGCCCGA 58.976 52.632 0.00 0.00 0.00 5.14
2158 2239 5.475220 CAGTGGATCTACGATGAGATACCTT 59.525 44.000 3.29 0.00 36.11 3.50
2163 2244 7.175119 TGGATCTACGATGAGATACCTTAAGTG 59.825 40.741 0.97 0.00 36.11 3.16
2228 2309 6.701841 ACTTGCTGTACTATATTTGGTGATCG 59.298 38.462 0.00 0.00 0.00 3.69
2377 2859 1.151668 CGCTTCTTGACAAGAGTGGG 58.848 55.000 17.06 16.84 39.03 4.61
2414 2896 9.507280 CTAAATGCTTACTGATTTATGGTTGTG 57.493 33.333 0.00 0.00 0.00 3.33
2431 2913 1.339055 TGTGTTAGCTGTCAGGGATGC 60.339 52.381 1.14 0.00 0.00 3.91
2487 2969 8.217799 ACTGTGCCCATAATATTTGTATGTACT 58.782 33.333 0.00 0.00 0.00 2.73
2867 3349 1.512926 ACGATCTTGCTGTGACCAAC 58.487 50.000 0.00 0.00 0.00 3.77
3095 3577 3.429822 GCACCATAATGTCAGCAAGCAAT 60.430 43.478 0.00 0.00 0.00 3.56
3210 3692 1.326951 TGCCACGGTAGCAGCTCATA 61.327 55.000 0.00 0.00 34.69 2.15
3275 3757 0.693049 TTTCAAGTGGGAGAGAGGGC 59.307 55.000 0.00 0.00 0.00 5.19
3582 4066 2.143925 CTTGAGACCCGTGTTTCCTTC 58.856 52.381 0.00 0.00 0.00 3.46
3630 4114 5.067283 GGGTTTCGCTTCAATATGGTATTGT 59.933 40.000 8.94 0.00 0.00 2.71
3844 4341 4.150451 GGTTTAACATGTGCATTTGCTGAC 59.850 41.667 0.00 0.00 42.66 3.51
3847 4344 1.000060 ACATGTGCATTTGCTGACACC 60.000 47.619 0.00 0.00 42.66 4.16
3881 4380 7.939039 TCTTATCTCTTATGGCAAATTAGTGGG 59.061 37.037 0.00 0.00 0.00 4.61
3905 4407 2.964978 CCTTTCGGGGCAGCAAAG 59.035 61.111 0.00 0.00 0.00 2.77
3908 4410 1.809567 CTTTCGGGGCAGCAAAGCTT 61.810 55.000 0.00 0.00 36.40 3.74
3910 4412 4.060038 CGGGGCAGCAAAGCTTGG 62.060 66.667 0.00 0.00 36.40 3.61
3912 4414 4.383861 GGGCAGCAAAGCTTGGCC 62.384 66.667 22.47 20.04 43.96 5.36
3917 4419 0.389426 CAGCAAAGCTTGGCCACATC 60.389 55.000 22.47 0.00 36.40 3.06
3966 4471 2.092323 GTTACATGCTCCCTCCAAACC 58.908 52.381 0.00 0.00 0.00 3.27
3967 4472 0.251916 TACATGCTCCCTCCAAACCG 59.748 55.000 0.00 0.00 0.00 4.44
4027 4542 3.255642 CAGTTGTTGTCTTTGTATGGGGG 59.744 47.826 0.00 0.00 0.00 5.40
4035 4550 3.381590 GTCTTTGTATGGGGGCTTCATTC 59.618 47.826 0.00 0.00 0.00 2.67
4050 4565 2.507484 TCATTCAGTCTTGCCAGGTTG 58.493 47.619 0.00 0.00 0.00 3.77
4142 4793 2.574006 TGATGAACCAGAGCAAGCTT 57.426 45.000 0.00 0.00 0.00 3.74
4159 4810 5.626955 GCAAGCTTTGAATACTGAACAGTTC 59.373 40.000 12.66 6.32 42.54 3.01
4187 4843 2.618241 TGTTTTTGTGAGCAGTGCTAGG 59.382 45.455 19.77 0.00 39.88 3.02
4234 4890 6.433847 TCTGGTTCTGTTCATTCCTCTAAA 57.566 37.500 0.00 0.00 0.00 1.85
4275 4951 1.586154 GAGGGTTGCGTTGTGGATGG 61.586 60.000 0.00 0.00 0.00 3.51
4332 5044 6.537453 ACTTGAGTTCTGCTACATATGACT 57.463 37.500 10.38 0.00 0.00 3.41
4389 5125 5.648178 TGAACAAATCACCATCCAATCAG 57.352 39.130 0.00 0.00 31.50 2.90
4398 5134 2.358898 ACCATCCAATCAGCAAATACGC 59.641 45.455 0.00 0.00 0.00 4.42
4433 5174 8.755977 CCCAAAATAAGTGAGGAAGTACTACTA 58.244 37.037 0.00 0.00 0.00 1.82
4434 5175 9.583765 CCAAAATAAGTGAGGAAGTACTACTAC 57.416 37.037 0.00 0.00 0.00 2.73
4488 5239 6.738832 AACCGAAGCTAAAATCCTCTAAAC 57.261 37.500 0.00 0.00 0.00 2.01
4499 5250 2.537143 TCCTCTAAACTCCCTGTCCAC 58.463 52.381 0.00 0.00 0.00 4.02
4521 5272 0.461961 GCCCTAACTCTCGCTGTCAT 59.538 55.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.328279 CAACAGAAAAGACCACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
90 91 0.516877 ATTGTTCACACGATGGCACG 59.483 50.000 7.71 7.71 39.31 5.34
165 169 8.103305 GGCACTAAATCATAGAATAGAATGGGA 58.897 37.037 0.00 0.00 0.00 4.37
220 225 1.153369 CGATCGGGTCAGCCAATGT 60.153 57.895 7.38 0.00 36.17 2.71
236 241 4.696078 GCGTTATAGTGTCGCCGA 57.304 55.556 0.00 0.00 43.41 5.54
240 245 2.040714 TATGCGGCGTTATAGTGTCG 57.959 50.000 9.37 0.00 0.00 4.35
241 246 2.592897 CGATATGCGGCGTTATAGTGTC 59.407 50.000 9.37 2.62 36.03 3.67
242 247 2.592194 CGATATGCGGCGTTATAGTGT 58.408 47.619 9.37 0.00 36.03 3.55
243 248 1.320555 GCGATATGCGGCGTTATAGTG 59.679 52.381 9.37 6.08 41.29 2.74
244 249 1.625616 GCGATATGCGGCGTTATAGT 58.374 50.000 9.37 0.00 41.29 2.12
358 395 0.171455 CGTCCTGTCTGTACTCCTGC 59.829 60.000 0.00 0.00 0.00 4.85
397 434 0.040067 CAGTGCCCGCTTTCTTGAAC 60.040 55.000 0.00 0.00 0.00 3.18
483 520 4.899239 GTGCCATCGAGGGGAGCG 62.899 72.222 19.23 0.00 38.09 5.03
546 583 0.392461 TAAGTGCGCATTCCCCTCAC 60.392 55.000 15.91 0.00 0.00 3.51
590 632 3.246112 CGTCTTCCACCCCACCCA 61.246 66.667 0.00 0.00 0.00 4.51
745 787 0.106419 AACCCACCTCGGAAGCAAAA 60.106 50.000 0.00 0.00 36.56 2.44
763 805 0.772124 AGGAGGAGTTGGGCCTGAAA 60.772 55.000 4.53 0.00 35.44 2.69
798 840 1.139095 CTCGTAAGGTGGGCTCGAC 59.861 63.158 0.00 0.00 38.47 4.20
1047 1098 0.386731 CGCCAACCCTTAAGCAAACG 60.387 55.000 0.00 0.00 0.00 3.60
1244 1295 1.224722 GCCCGATTCGATCCAAGCTC 61.225 60.000 7.83 0.00 0.00 4.09
1331 1383 2.479566 ATCAACTTCACACAGCCGAT 57.520 45.000 0.00 0.00 0.00 4.18
1397 1449 2.987413 TTCGACATTGTGATTGTGCC 57.013 45.000 0.00 0.00 0.00 5.01
1460 1512 1.269778 GGCACCAAAGAAGCTCCAAAC 60.270 52.381 0.00 0.00 0.00 2.93
1473 1525 0.602638 CTACACGCAGAAGGCACCAA 60.603 55.000 0.00 0.00 45.17 3.67
1673 1725 2.604132 GCTGAAGTTCACTCTGCAAAGC 60.604 50.000 0.08 0.00 0.00 3.51
1996 2048 8.547967 TGGTGAAGTCTTAGCAATAGTAAAAG 57.452 34.615 0.00 0.00 0.00 2.27
2021 2073 7.120579 TCAATTTGCGATAGTTTGTACAGGAAT 59.879 33.333 0.00 0.00 39.35 3.01
2033 2085 8.492673 TCTTACAATCTTCAATTTGCGATAGT 57.507 30.769 0.00 0.00 39.35 2.12
2058 2132 6.321821 TCATATTAGTGGGCCTAACAGTTT 57.678 37.500 4.53 0.00 38.45 2.66
2060 2134 6.557253 TGTATCATATTAGTGGGCCTAACAGT 59.443 38.462 4.53 0.00 38.45 3.55
2092 2166 9.330063 CATTGCTAACAGGTGAGAAGATTATTA 57.670 33.333 0.00 0.00 0.00 0.98
2093 2167 7.201767 GCATTGCTAACAGGTGAGAAGATTATT 60.202 37.037 0.16 0.00 0.00 1.40
2094 2168 6.261826 GCATTGCTAACAGGTGAGAAGATTAT 59.738 38.462 0.16 0.00 0.00 1.28
2095 2169 5.586243 GCATTGCTAACAGGTGAGAAGATTA 59.414 40.000 0.16 0.00 0.00 1.75
2105 2179 3.065786 CGATTGATGCATTGCTAACAGGT 59.934 43.478 10.49 1.33 0.00 4.00
2113 2187 1.659335 CGGGCGATTGATGCATTGC 60.659 57.895 0.00 0.46 0.00 3.56
2122 2196 2.593468 ATCCACTGGTCGGGCGATTG 62.593 60.000 0.00 0.00 0.00 2.67
2123 2197 2.311688 GATCCACTGGTCGGGCGATT 62.312 60.000 0.00 0.00 0.00 3.34
2124 2198 2.764128 ATCCACTGGTCGGGCGAT 60.764 61.111 0.00 0.00 0.00 4.58
2127 2201 1.442148 GTAGATCCACTGGTCGGGC 59.558 63.158 0.00 0.00 0.00 6.13
2129 2203 1.001268 CATCGTAGATCCACTGGTCGG 60.001 57.143 0.00 0.00 45.12 4.79
2130 2204 1.947456 TCATCGTAGATCCACTGGTCG 59.053 52.381 0.00 0.00 45.12 4.79
2131 2205 3.215151 TCTCATCGTAGATCCACTGGTC 58.785 50.000 0.00 0.00 45.12 4.02
2132 2206 3.298686 TCTCATCGTAGATCCACTGGT 57.701 47.619 0.00 0.00 45.12 4.00
2158 2239 3.429272 GCAATTAAGCATGCTGGCACTTA 60.429 43.478 23.48 5.62 39.46 2.24
2163 2244 0.179129 ACGCAATTAAGCATGCTGGC 60.179 50.000 23.48 17.95 40.39 4.85
2228 2309 7.702348 ACAATAAAAACTGAGACTGAAGCAAAC 59.298 33.333 0.00 0.00 0.00 2.93
2283 2364 7.470702 CGGATGAAAGGATCACTACTGTTATCT 60.471 40.741 0.00 0.00 41.93 1.98
2352 2650 4.034510 CACTCTTGTCAAGAAGCGAAAAGT 59.965 41.667 15.97 5.54 37.02 2.66
2414 2896 2.409948 AAGCATCCCTGACAGCTAAC 57.590 50.000 0.00 0.00 36.07 2.34
2867 3349 4.262045 GCGGCAATTACAAACTTGTTATCG 59.738 41.667 0.00 0.00 42.35 2.92
3095 3577 4.473196 TGGATGAAAGCTAGTGTATTGGGA 59.527 41.667 0.00 0.00 0.00 4.37
3188 3670 1.228124 AGCTGCTACCGTGGCAAAA 60.228 52.632 11.04 0.00 39.30 2.44
3210 3692 3.118847 ACACAGATCGAGCTGACATCAAT 60.119 43.478 35.32 9.82 39.20 2.57
3275 3757 2.462889 ACATCAAAAAGCTTGTGCACG 58.537 42.857 13.13 0.00 42.74 5.34
3582 4066 2.162208 CACATCCTGGTTTGAATGACCG 59.838 50.000 6.44 0.00 40.13 4.79
3607 4091 6.131544 ACAATACCATATTGAAGCGAAACC 57.868 37.500 14.04 0.00 33.51 3.27
3630 4114 2.632996 ACGAGTGTCCTCAAGAATGGAA 59.367 45.455 0.00 0.00 37.59 3.53
3697 4190 1.191647 CGTACCGTGCTGTCAGTTTTC 59.808 52.381 0.93 0.00 0.00 2.29
3847 4344 5.059833 GCCATAAGAGATAAGAACCCACAG 58.940 45.833 0.00 0.00 0.00 3.66
3895 4394 4.383861 GGCCAAGCTTTGCTGCCC 62.384 66.667 20.64 1.93 40.45 5.36
3897 4396 2.356673 GTGGCCAAGCTTTGCTGC 60.357 61.111 20.64 10.86 39.62 5.25
3904 4406 1.841302 TTCCTCGATGTGGCCAAGCT 61.841 55.000 7.24 0.00 0.00 3.74
3905 4407 1.372087 CTTCCTCGATGTGGCCAAGC 61.372 60.000 7.24 0.00 0.00 4.01
3908 4410 0.178767 CATCTTCCTCGATGTGGCCA 59.821 55.000 0.00 0.00 36.80 5.36
3910 4412 1.162800 GCCATCTTCCTCGATGTGGC 61.163 60.000 4.69 4.69 39.26 5.01
3912 4414 2.251409 ATGCCATCTTCCTCGATGTG 57.749 50.000 0.00 0.00 39.26 3.21
3917 4419 0.465097 AGCCAATGCCATCTTCCTCG 60.465 55.000 0.00 0.00 38.69 4.63
3941 4443 1.559682 GGAGGGAGCATGTAACCAGAA 59.440 52.381 0.00 0.00 0.00 3.02
3942 4444 1.204146 GGAGGGAGCATGTAACCAGA 58.796 55.000 0.00 0.00 0.00 3.86
3956 4461 1.204941 CTACTCACTCGGTTTGGAGGG 59.795 57.143 0.00 0.00 38.86 4.30
3966 4471 7.809806 TGTATTCATATGCAATCTACTCACTCG 59.190 37.037 0.00 0.00 0.00 4.18
3967 4472 8.920665 GTGTATTCATATGCAATCTACTCACTC 58.079 37.037 0.00 0.00 0.00 3.51
4027 4542 1.471684 CCTGGCAAGACTGAATGAAGC 59.528 52.381 0.00 0.00 0.00 3.86
4035 4550 0.250640 AGCTCAACCTGGCAAGACTG 60.251 55.000 0.00 0.00 0.00 3.51
4050 4565 3.693085 TCTGCCAAATCTCAATCAAGCTC 59.307 43.478 0.00 0.00 0.00 4.09
4093 4608 7.381948 TGCATCTGACAAAATGAAACATTGTAC 59.618 33.333 0.00 0.00 37.41 2.90
4095 4610 6.282167 TGCATCTGACAAAATGAAACATTGT 58.718 32.000 0.00 0.00 39.82 2.71
4159 4810 5.610975 CACTGCTCACAAAAACAAAAACAG 58.389 37.500 0.00 0.00 0.00 3.16
4275 4951 1.521681 GACATACGGCCTCCTGCAC 60.522 63.158 0.00 0.00 43.89 4.57
4358 5093 6.098124 GGATGGTGATTTGTTCATGGGAAATA 59.902 38.462 0.00 0.00 36.54 1.40
4389 5125 3.151673 GACGGAGCGGCGTATTTGC 62.152 63.158 9.37 0.00 0.00 3.68
4398 5134 1.014352 CTTATTTTGGGACGGAGCGG 58.986 55.000 0.00 0.00 0.00 5.52
4488 5239 0.909610 TAGGGCAAGTGGACAGGGAG 60.910 60.000 0.00 0.00 0.00 4.30
4499 5250 0.247736 ACAGCGAGAGTTAGGGCAAG 59.752 55.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.