Multiple sequence alignment - TraesCS5D01G393600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G393600 chr5D 100.000 2866 0 0 1 2866 461911557 461914422 0.000000e+00 5293.0
1 TraesCS5D01G393600 chr5D 76.190 420 78 20 1419 1827 495619053 495618645 4.840000e-48 202.0
2 TraesCS5D01G393600 chr5D 90.909 99 7 2 2458 2556 88467971 88467875 6.440000e-27 132.0
3 TraesCS5D01G393600 chr5B 95.236 1868 67 9 521 2387 567873453 567875299 0.000000e+00 2937.0
4 TraesCS5D01G393600 chr5B 88.085 235 24 3 2557 2787 153888917 153888683 2.810000e-70 276.0
5 TraesCS5D01G393600 chr5B 76.429 420 77 20 1419 1827 612674208 612673800 1.040000e-49 207.0
6 TraesCS5D01G393600 chr5B 87.838 74 5 2 2797 2866 567875316 567875389 1.830000e-12 84.2
7 TraesCS5D01G393600 chr5A 91.996 2074 82 40 1 2013 581925255 581927305 0.000000e+00 2833.0
8 TraesCS5D01G393600 chr5A 75.952 420 79 20 1419 1827 619683190 619682782 2.250000e-46 196.0
9 TraesCS5D01G393600 chr6B 88.793 232 22 3 2560 2788 712265465 712265235 6.050000e-72 281.0
10 TraesCS5D01G393600 chr2A 87.607 234 25 3 2557 2786 58997926 58998159 4.710000e-68 268.0
11 TraesCS5D01G393600 chr2A 87.069 232 26 3 2560 2787 69212826 69212595 2.830000e-65 259.0
12 TraesCS5D01G393600 chr6D 87.773 229 26 2 2560 2786 359698345 359698117 1.690000e-67 267.0
13 TraesCS5D01G393600 chr6D 90.385 104 7 3 2453 2556 5409017 5409117 1.790000e-27 134.0
14 TraesCS5D01G393600 chr2B 87.446 231 24 3 2562 2787 775366089 775366319 7.880000e-66 261.0
15 TraesCS5D01G393600 chr1A 86.809 235 27 3 2557 2787 49354390 49354624 2.830000e-65 259.0
16 TraesCS5D01G393600 chr1A 90.476 105 7 3 2453 2556 12931580 12931682 4.980000e-28 135.0
17 TraesCS5D01G393600 chr7B 86.809 235 26 4 2557 2787 553331090 553331323 1.020000e-64 257.0
18 TraesCS5D01G393600 chr7B 89.423 104 8 3 2453 2556 63980418 63980318 8.330000e-26 128.0
19 TraesCS5D01G393600 chr4A 86.441 236 28 3 2560 2791 166997324 166997089 3.660000e-64 255.0
20 TraesCS5D01G393600 chr3B 91.346 104 7 2 2453 2556 817064544 817064645 1.070000e-29 141.0
21 TraesCS5D01G393600 chr2D 89.423 104 9 2 2453 2556 69254258 69254157 2.320000e-26 130.0
22 TraesCS5D01G393600 chr1B 89.423 104 9 1 2453 2556 24936885 24936986 2.320000e-26 130.0
23 TraesCS5D01G393600 chr3D 88.679 106 9 3 2451 2556 94515575 94515473 3.000000e-25 126.0
24 TraesCS5D01G393600 chr3D 86.325 117 12 3 2445 2561 119395745 119395857 1.080000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G393600 chr5D 461911557 461914422 2865 False 5293.0 5293 100.000 1 2866 1 chr5D.!!$F1 2865
1 TraesCS5D01G393600 chr5B 567873453 567875389 1936 False 1510.6 2937 91.537 521 2866 2 chr5B.!!$F1 2345
2 TraesCS5D01G393600 chr5A 581925255 581927305 2050 False 2833.0 2833 91.996 1 2013 1 chr5A.!!$F1 2012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 466 0.250038 CGCCATCATGGTCACCCTAG 60.25 60.0 5.31 0.0 40.46 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2346 0.033796 CCCAGTCCCACCTACTCGTA 60.034 60.0 0.0 0.0 0.0 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.736824 GCATGCAAAAACTGTTGTAAAAACC 59.263 36.000 14.21 0.00 0.00 3.27
182 185 8.896320 ATACTGAAAATAAACACCCCAAAAAC 57.104 30.769 0.00 0.00 0.00 2.43
256 259 8.949421 AGATTAACATAGAAGATTGTACCCCAT 58.051 33.333 0.00 0.00 0.00 4.00
315 319 9.447157 AAAGAGAAATTGTTTTCCATTTGTGAA 57.553 25.926 0.00 0.00 41.86 3.18
317 321 9.447157 AGAGAAATTGTTTTCCATTTGTGAAAA 57.553 25.926 0.00 0.00 41.86 2.29
377 400 5.407407 ACATCATATACGGAACATCCTCC 57.593 43.478 0.00 0.00 33.30 4.30
396 419 4.680237 CCGCTGTCGACAAGGCCA 62.680 66.667 20.49 0.00 38.10 5.36
405 428 3.672295 GACAAGGCCAGCGGAGGAG 62.672 68.421 5.01 0.00 0.00 3.69
432 455 4.802051 AAGGTGCGCCGCCATCAT 62.802 61.111 18.38 0.00 40.50 2.45
438 461 3.576356 CGCCGCCATCATGGTCAC 61.576 66.667 5.31 0.00 40.46 3.67
439 462 3.211963 GCCGCCATCATGGTCACC 61.212 66.667 5.31 0.00 40.46 4.02
440 463 2.516930 CCGCCATCATGGTCACCC 60.517 66.667 5.31 0.00 40.46 4.61
441 464 2.591753 CGCCATCATGGTCACCCT 59.408 61.111 5.31 0.00 40.46 4.34
442 465 1.695114 CCGCCATCATGGTCACCCTA 61.695 60.000 5.31 0.00 40.46 3.53
443 466 0.250038 CGCCATCATGGTCACCCTAG 60.250 60.000 5.31 0.00 40.46 3.02
444 467 0.536006 GCCATCATGGTCACCCTAGC 60.536 60.000 5.31 0.00 40.46 3.42
445 468 0.250038 CCATCATGGTCACCCTAGCG 60.250 60.000 0.00 0.00 31.35 4.26
446 469 0.250038 CATCATGGTCACCCTAGCGG 60.250 60.000 0.00 0.00 37.81 5.52
620 644 3.360249 AAATACGGATAACCCTCGTCG 57.640 47.619 0.00 0.00 38.19 5.12
636 660 1.448985 GTCGGTAAGCAAAGGCATCA 58.551 50.000 0.00 0.00 44.61 3.07
743 770 4.821589 GCGTCAGCCTCCCGGAAG 62.822 72.222 0.73 0.00 37.42 3.46
957 989 1.449423 CCCATTCGATCCGTGCACA 60.449 57.895 18.64 0.00 0.00 4.57
978 1010 1.133363 CCGTAGAGGAGAGGAGAGGA 58.867 60.000 0.00 0.00 45.00 3.71
991 1023 1.205179 GGAGAGGAAAGGAAGACCGAC 59.795 57.143 0.00 0.00 41.83 4.79
993 1025 0.974383 GAGGAAAGGAAGACCGACCA 59.026 55.000 0.00 0.00 41.83 4.02
1290 1322 1.268079 GGTACGTCCCCTTACGCTATC 59.732 57.143 0.00 0.00 46.71 2.08
1291 1323 1.069636 GTACGTCCCCTTACGCTATCG 60.070 57.143 0.00 0.00 46.71 2.92
1325 1357 6.576313 CACAGACTCAAATCAATTCTTCGTTG 59.424 38.462 0.00 0.00 0.00 4.10
1326 1358 6.082338 CAGACTCAAATCAATTCTTCGTTGG 58.918 40.000 0.00 0.00 0.00 3.77
1327 1359 5.765182 AGACTCAAATCAATTCTTCGTTGGT 59.235 36.000 0.00 0.00 0.00 3.67
1348 1410 4.870426 GGTATGCTCTGTTTTCTTCGATGA 59.130 41.667 0.00 0.00 0.00 2.92
1881 1943 0.747283 CTGAAGTGCCTGCATCTCCC 60.747 60.000 0.00 0.00 0.00 4.30
1919 1981 2.364190 CCCCTCCTCCTATCCTACTCT 58.636 57.143 0.00 0.00 0.00 3.24
1929 1999 7.744998 TCCTCCTATCCTACTCTAGTAATCCTT 59.255 40.741 0.00 0.00 0.00 3.36
2034 2105 7.687941 AATTTGGTCTATGTGACTTTGTAGG 57.312 36.000 0.00 0.00 44.74 3.18
2109 2180 2.508526 CTTGGGCTCTGTTTTAGCTGT 58.491 47.619 0.00 0.00 39.97 4.40
2110 2181 1.896220 TGGGCTCTGTTTTAGCTGTG 58.104 50.000 0.00 0.00 39.97 3.66
2116 2187 1.841663 CTGTTTTAGCTGTGCCGCGT 61.842 55.000 4.92 0.00 34.40 6.01
2141 2212 3.445096 GCCTCTGGTAAAATGTTCTGCAT 59.555 43.478 0.00 0.00 40.03 3.96
2148 2219 5.769662 TGGTAAAATGTTCTGCATGTTCTCT 59.230 36.000 0.00 0.00 36.48 3.10
2171 2242 3.387699 TGGCATCCATCGTCTTATCTTGA 59.612 43.478 0.00 0.00 0.00 3.02
2174 2245 3.735237 TCCATCGTCTTATCTTGAGGC 57.265 47.619 0.00 0.00 0.00 4.70
2182 2253 0.908910 TTATCTTGAGGCTTGGGCGA 59.091 50.000 0.00 0.00 39.81 5.54
2198 2269 1.131218 CGAGTTGTCGTCGACGCTA 59.869 57.895 32.19 20.10 41.57 4.26
2199 2270 0.852412 CGAGTTGTCGTCGACGCTAG 60.852 60.000 32.19 18.94 41.57 3.42
2200 2271 0.441533 GAGTTGTCGTCGACGCTAGA 59.558 55.000 32.19 13.26 39.60 2.43
2246 2317 0.745845 ATCATGTGCTCCTGCGTTCC 60.746 55.000 0.00 0.00 43.34 3.62
2248 2319 1.376424 ATGTGCTCCTGCGTTCCTG 60.376 57.895 0.00 0.00 43.34 3.86
2270 2341 4.349503 TGTGCGCTTGGGCCATCT 62.350 61.111 7.26 0.00 34.44 2.90
2271 2342 2.124736 GTGCGCTTGGGCCATCTA 60.125 61.111 7.26 0.00 34.44 1.98
2272 2343 2.182842 GTGCGCTTGGGCCATCTAG 61.183 63.158 7.26 2.46 34.44 2.43
2273 2344 2.366393 TGCGCTTGGGCCATCTAGA 61.366 57.895 7.26 0.00 34.44 2.43
2274 2345 1.153168 GCGCTTGGGCCATCTAGAA 60.153 57.895 7.26 0.00 34.44 2.10
2275 2346 0.536006 GCGCTTGGGCCATCTAGAAT 60.536 55.000 7.26 0.00 34.44 2.40
2277 2348 2.417719 CGCTTGGGCCATCTAGAATAC 58.582 52.381 7.26 0.00 34.44 1.89
2278 2349 2.417719 GCTTGGGCCATCTAGAATACG 58.582 52.381 7.26 0.00 0.00 3.06
2279 2350 2.037251 GCTTGGGCCATCTAGAATACGA 59.963 50.000 7.26 0.00 0.00 3.43
2280 2351 3.862642 GCTTGGGCCATCTAGAATACGAG 60.863 52.174 7.26 0.00 0.00 4.18
2281 2352 2.958818 TGGGCCATCTAGAATACGAGT 58.041 47.619 0.00 0.00 0.00 4.18
2282 2353 4.108501 TGGGCCATCTAGAATACGAGTA 57.891 45.455 0.00 0.00 0.00 2.59
2283 2354 4.079970 TGGGCCATCTAGAATACGAGTAG 58.920 47.826 0.00 0.00 0.00 2.57
2284 2355 3.444388 GGGCCATCTAGAATACGAGTAGG 59.556 52.174 4.39 0.00 0.00 3.18
2285 2356 4.080687 GGCCATCTAGAATACGAGTAGGT 58.919 47.826 0.00 0.00 0.00 3.08
2286 2357 4.082679 GGCCATCTAGAATACGAGTAGGTG 60.083 50.000 0.00 0.00 0.00 4.00
2287 2358 4.082679 GCCATCTAGAATACGAGTAGGTGG 60.083 50.000 0.00 3.87 44.78 4.61
2288 2359 4.459685 CCATCTAGAATACGAGTAGGTGGG 59.540 50.000 0.00 0.00 40.21 4.61
2289 2360 5.314529 CATCTAGAATACGAGTAGGTGGGA 58.685 45.833 0.00 0.00 0.00 4.37
2290 2361 4.712476 TCTAGAATACGAGTAGGTGGGAC 58.288 47.826 0.00 0.00 0.00 4.46
2291 2362 3.666345 AGAATACGAGTAGGTGGGACT 57.334 47.619 0.00 0.00 0.00 3.85
2292 2363 3.288964 AGAATACGAGTAGGTGGGACTG 58.711 50.000 0.00 0.00 0.00 3.51
2293 2364 2.068834 ATACGAGTAGGTGGGACTGG 57.931 55.000 0.00 0.00 0.00 4.00
2294 2365 0.033796 TACGAGTAGGTGGGACTGGG 60.034 60.000 0.00 0.00 0.00 4.45
2295 2366 2.722201 CGAGTAGGTGGGACTGGGC 61.722 68.421 0.00 0.00 0.00 5.36
2347 2420 1.546589 ATCGAACTACCGTGGGGCAA 61.547 55.000 0.00 0.00 36.48 4.52
2387 2460 5.629020 TGTGTCGTTCGTAAAATACTGTACC 59.371 40.000 0.00 0.00 0.00 3.34
2388 2461 5.629020 GTGTCGTTCGTAAAATACTGTACCA 59.371 40.000 0.00 0.00 0.00 3.25
2389 2462 5.858049 TGTCGTTCGTAAAATACTGTACCAG 59.142 40.000 0.00 0.00 37.52 4.00
2407 2480 3.664930 GTAGTATACGTAGCGCCGG 57.335 57.895 2.29 0.00 0.00 6.13
2409 2482 1.900585 TAGTATACGTAGCGCCGGCG 61.901 60.000 43.13 43.13 46.35 6.46
2419 2492 4.459331 CGCCGGCGAACCAACATG 62.459 66.667 44.86 10.04 42.83 3.21
2420 2493 4.114997 GCCGGCGAACCAACATGG 62.115 66.667 12.58 0.00 45.02 3.66
2421 2494 2.359354 CCGGCGAACCAACATGGA 60.359 61.111 9.30 0.00 40.96 3.41
2422 2495 2.398554 CCGGCGAACCAACATGGAG 61.399 63.158 9.30 0.00 40.96 3.86
2423 2496 2.398554 CGGCGAACCAACATGGAGG 61.399 63.158 0.00 0.20 40.96 4.30
2424 2497 1.002624 GGCGAACCAACATGGAGGA 60.003 57.895 12.10 0.00 40.96 3.71
2425 2498 0.608035 GGCGAACCAACATGGAGGAA 60.608 55.000 12.10 0.00 40.96 3.36
2426 2499 0.521735 GCGAACCAACATGGAGGAAC 59.478 55.000 12.10 5.20 40.96 3.62
2427 2500 1.890876 CGAACCAACATGGAGGAACA 58.109 50.000 12.10 0.00 40.96 3.18
2428 2501 1.806542 CGAACCAACATGGAGGAACAG 59.193 52.381 12.10 0.00 40.96 3.16
2429 2502 2.810400 CGAACCAACATGGAGGAACAGT 60.810 50.000 12.10 0.00 40.96 3.55
2430 2503 2.276732 ACCAACATGGAGGAACAGTG 57.723 50.000 12.10 0.00 40.96 3.66
2431 2504 1.202927 ACCAACATGGAGGAACAGTGG 60.203 52.381 12.10 0.00 40.96 4.00
2432 2505 1.202927 CCAACATGGAGGAACAGTGGT 60.203 52.381 0.00 0.00 40.96 4.16
2433 2506 2.039746 CCAACATGGAGGAACAGTGGTA 59.960 50.000 0.00 0.00 40.96 3.25
2434 2507 3.308402 CCAACATGGAGGAACAGTGGTAT 60.308 47.826 0.00 0.00 40.96 2.73
2435 2508 4.335416 CAACATGGAGGAACAGTGGTATT 58.665 43.478 0.00 0.00 0.00 1.89
2436 2509 4.222124 ACATGGAGGAACAGTGGTATTC 57.778 45.455 0.00 0.00 0.00 1.75
2437 2510 3.054361 ACATGGAGGAACAGTGGTATTCC 60.054 47.826 0.00 3.34 44.14 3.01
2438 2511 1.913419 TGGAGGAACAGTGGTATTCCC 59.087 52.381 7.25 0.00 44.78 3.97
2439 2512 1.913419 GGAGGAACAGTGGTATTCCCA 59.087 52.381 7.25 0.00 44.78 4.37
2440 2513 2.092914 GGAGGAACAGTGGTATTCCCAG 60.093 54.545 7.25 0.00 46.45 4.45
2441 2514 1.282157 AGGAACAGTGGTATTCCCAGC 59.718 52.381 7.25 0.00 46.45 4.85
2442 2515 1.682087 GGAACAGTGGTATTCCCAGCC 60.682 57.143 0.00 0.00 46.45 4.85
2443 2516 0.331616 AACAGTGGTATTCCCAGCCC 59.668 55.000 0.00 0.00 46.45 5.19
2444 2517 0.550147 ACAGTGGTATTCCCAGCCCT 60.550 55.000 0.00 0.00 46.45 5.19
2445 2518 0.107017 CAGTGGTATTCCCAGCCCTG 60.107 60.000 0.00 0.00 46.45 4.45
2446 2519 1.227383 GTGGTATTCCCAGCCCTGG 59.773 63.158 7.36 7.36 46.45 4.45
2454 2527 2.673523 CCAGCCCTGGTCTGAAGG 59.326 66.667 6.26 0.00 45.53 3.46
2455 2528 1.920325 CCAGCCCTGGTCTGAAGGA 60.920 63.158 6.26 0.00 45.53 3.36
2456 2529 1.492133 CCAGCCCTGGTCTGAAGGAA 61.492 60.000 6.26 0.00 45.53 3.36
2457 2530 0.322008 CAGCCCTGGTCTGAAGGAAC 60.322 60.000 0.00 0.00 36.91 3.62
2458 2531 0.768221 AGCCCTGGTCTGAAGGAACA 60.768 55.000 0.00 0.00 39.67 3.18
2463 2536 1.507140 TGGTCTGAAGGAACAGTGGT 58.493 50.000 0.00 0.00 36.62 4.16
2464 2537 2.684943 TGGTCTGAAGGAACAGTGGTA 58.315 47.619 0.00 0.00 36.62 3.25
2465 2538 3.248024 TGGTCTGAAGGAACAGTGGTAT 58.752 45.455 0.00 0.00 36.62 2.73
2466 2539 3.650942 TGGTCTGAAGGAACAGTGGTATT 59.349 43.478 0.00 0.00 36.62 1.89
2467 2540 4.254492 GGTCTGAAGGAACAGTGGTATTC 58.746 47.826 0.00 0.00 38.79 1.75
2468 2541 4.254492 GTCTGAAGGAACAGTGGTATTCC 58.746 47.826 3.34 3.34 44.14 3.01
2469 2542 3.263425 TCTGAAGGAACAGTGGTATTCCC 59.737 47.826 7.25 0.00 44.78 3.97
2470 2543 2.983192 TGAAGGAACAGTGGTATTCCCA 59.017 45.455 7.25 0.00 44.78 4.37
2471 2544 3.009033 TGAAGGAACAGTGGTATTCCCAG 59.991 47.826 7.25 0.00 46.45 4.45
2472 2545 1.282157 AGGAACAGTGGTATTCCCAGC 59.718 52.381 7.25 0.00 46.45 4.85
2473 2546 1.682087 GGAACAGTGGTATTCCCAGCC 60.682 57.143 0.00 0.00 46.45 4.85
2474 2547 0.331616 AACAGTGGTATTCCCAGCCC 59.668 55.000 0.00 0.00 46.45 5.19
2475 2548 0.844661 ACAGTGGTATTCCCAGCCCA 60.845 55.000 0.00 0.00 46.45 5.36
2476 2549 0.394352 CAGTGGTATTCCCAGCCCAC 60.394 60.000 0.00 0.00 46.45 4.61
2477 2550 1.076995 GTGGTATTCCCAGCCCACC 60.077 63.158 0.00 0.00 46.45 4.61
2478 2551 1.542628 TGGTATTCCCAGCCCACCA 60.543 57.895 0.00 0.00 38.72 4.17
2479 2552 1.227383 GGTATTCCCAGCCCACCAG 59.773 63.158 0.00 0.00 0.00 4.00
2480 2553 1.227383 GTATTCCCAGCCCACCAGG 59.773 63.158 0.00 0.00 39.47 4.45
2497 2570 3.249687 GGGCTTAAGTCCTGGTGTG 57.750 57.895 19.23 0.00 36.72 3.82
2498 2571 0.960861 GGGCTTAAGTCCTGGTGTGC 60.961 60.000 19.23 0.00 36.72 4.57
2499 2572 0.036875 GGCTTAAGTCCTGGTGTGCT 59.963 55.000 4.02 0.00 0.00 4.40
2500 2573 1.443802 GCTTAAGTCCTGGTGTGCTC 58.556 55.000 4.02 0.00 0.00 4.26
2501 2574 1.714794 CTTAAGTCCTGGTGTGCTCG 58.285 55.000 0.00 0.00 0.00 5.03
2502 2575 0.320421 TTAAGTCCTGGTGTGCTCGC 60.320 55.000 0.00 0.00 0.00 5.03
2503 2576 1.468506 TAAGTCCTGGTGTGCTCGCA 61.469 55.000 1.32 0.00 0.00 5.10
2504 2577 2.046892 GTCCTGGTGTGCTCGCAT 60.047 61.111 1.32 0.00 0.00 4.73
2505 2578 1.672356 GTCCTGGTGTGCTCGCATT 60.672 57.895 1.32 0.00 0.00 3.56
2506 2579 0.391130 GTCCTGGTGTGCTCGCATTA 60.391 55.000 1.32 0.00 0.00 1.90
2507 2580 0.541392 TCCTGGTGTGCTCGCATTAT 59.459 50.000 1.32 0.00 0.00 1.28
2508 2581 1.065491 TCCTGGTGTGCTCGCATTATT 60.065 47.619 1.32 0.00 0.00 1.40
2509 2582 1.745087 CCTGGTGTGCTCGCATTATTT 59.255 47.619 1.32 0.00 0.00 1.40
2510 2583 2.164219 CCTGGTGTGCTCGCATTATTTT 59.836 45.455 1.32 0.00 0.00 1.82
2511 2584 3.367292 CCTGGTGTGCTCGCATTATTTTT 60.367 43.478 1.32 0.00 0.00 1.94
2533 2606 8.770438 TTTTTGATTTATTTCAGGATTTCCGG 57.230 30.769 0.00 0.00 42.08 5.14
2534 2607 5.514274 TGATTTATTTCAGGATTTCCGGC 57.486 39.130 0.00 0.00 42.08 6.13
2535 2608 4.036262 TGATTTATTTCAGGATTTCCGGCG 59.964 41.667 0.00 0.00 42.08 6.46
2536 2609 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
2537 2610 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
2538 2611 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
2539 2612 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
2540 2613 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
2558 2631 3.780624 GCTTTTAGCGGGAGGATGA 57.219 52.632 0.00 0.00 0.00 2.92
2559 2632 2.262423 GCTTTTAGCGGGAGGATGAT 57.738 50.000 0.00 0.00 0.00 2.45
2560 2633 1.876156 GCTTTTAGCGGGAGGATGATG 59.124 52.381 0.00 0.00 0.00 3.07
2561 2634 1.876156 CTTTTAGCGGGAGGATGATGC 59.124 52.381 0.00 0.00 0.00 3.91
2562 2635 1.131638 TTTAGCGGGAGGATGATGCT 58.868 50.000 0.00 0.00 39.59 3.79
2563 2636 1.131638 TTAGCGGGAGGATGATGCTT 58.868 50.000 0.00 0.00 37.12 3.91
2564 2637 0.394192 TAGCGGGAGGATGATGCTTG 59.606 55.000 0.00 0.00 37.12 4.01
2565 2638 2.550101 GCGGGAGGATGATGCTTGC 61.550 63.158 0.00 0.00 0.00 4.01
2566 2639 1.153107 CGGGAGGATGATGCTTGCA 60.153 57.895 0.00 0.00 0.00 4.08
2567 2640 0.536687 CGGGAGGATGATGCTTGCAT 60.537 55.000 7.91 7.91 0.00 3.96
2568 2641 1.700955 GGGAGGATGATGCTTGCATT 58.299 50.000 9.59 0.00 0.00 3.56
2569 2642 2.811504 CGGGAGGATGATGCTTGCATTA 60.812 50.000 9.59 6.04 0.00 1.90
2570 2643 3.428532 GGGAGGATGATGCTTGCATTAT 58.571 45.455 11.75 11.75 0.00 1.28
2571 2644 3.830755 GGGAGGATGATGCTTGCATTATT 59.169 43.478 12.88 0.39 0.00 1.40
2572 2645 4.282703 GGGAGGATGATGCTTGCATTATTT 59.717 41.667 12.88 6.27 0.00 1.40
2573 2646 5.467705 GGAGGATGATGCTTGCATTATTTC 58.532 41.667 12.88 12.77 0.00 2.17
2574 2647 5.243283 GGAGGATGATGCTTGCATTATTTCT 59.757 40.000 12.88 12.82 0.00 2.52
2575 2648 6.432162 GGAGGATGATGCTTGCATTATTTCTA 59.568 38.462 12.88 0.00 0.00 2.10
2576 2649 7.361885 GGAGGATGATGCTTGCATTATTTCTAG 60.362 40.741 12.88 0.00 0.00 2.43
2577 2650 7.229308 AGGATGATGCTTGCATTATTTCTAGA 58.771 34.615 12.88 0.00 0.00 2.43
2578 2651 7.889073 AGGATGATGCTTGCATTATTTCTAGAT 59.111 33.333 12.88 0.00 0.00 1.98
2579 2652 8.521176 GGATGATGCTTGCATTATTTCTAGATT 58.479 33.333 12.88 0.00 0.00 2.40
2580 2653 9.909644 GATGATGCTTGCATTATTTCTAGATTT 57.090 29.630 12.88 0.00 0.00 2.17
2596 2669 8.677148 TTCTAGATTTATTTCAGGATTTCCGG 57.323 34.615 0.00 0.00 42.08 5.14
2597 2670 5.774498 AGATTTATTTCAGGATTTCCGGC 57.226 39.130 0.00 0.00 42.08 6.13
2598 2671 5.200483 AGATTTATTTCAGGATTTCCGGCA 58.800 37.500 0.00 0.00 42.08 5.69
2599 2672 5.656416 AGATTTATTTCAGGATTTCCGGCAA 59.344 36.000 0.00 0.00 42.08 4.52
2600 2673 5.930837 TTTATTTCAGGATTTCCGGCAAT 57.069 34.783 0.00 0.00 42.08 3.56
2601 2674 3.806625 ATTTCAGGATTTCCGGCAATG 57.193 42.857 3.34 0.00 42.08 2.82
2602 2675 0.817013 TTCAGGATTTCCGGCAATGC 59.183 50.000 10.26 10.26 42.08 3.56
2603 2676 1.064621 CAGGATTTCCGGCAATGCG 59.935 57.895 12.24 4.57 42.08 4.73
2604 2677 2.278792 GGATTTCCGGCAATGCGC 60.279 61.111 3.34 0.00 41.28 6.09
2605 2678 2.774799 GGATTTCCGGCAATGCGCT 61.775 57.895 9.73 0.00 41.91 5.92
2606 2679 1.139520 GATTTCCGGCAATGCGCTT 59.860 52.632 9.73 0.00 41.91 4.68
2607 2680 0.458370 GATTTCCGGCAATGCGCTTT 60.458 50.000 9.73 5.65 41.91 3.51
2608 2681 0.458370 ATTTCCGGCAATGCGCTTTC 60.458 50.000 9.73 3.08 41.91 2.62
2609 2682 1.800283 TTTCCGGCAATGCGCTTTCA 61.800 50.000 9.73 0.00 41.91 2.69
2610 2683 2.198906 TTCCGGCAATGCGCTTTCAG 62.199 55.000 9.73 0.00 41.91 3.02
2611 2684 2.562912 CGGCAATGCGCTTTCAGT 59.437 55.556 9.73 0.00 41.91 3.41
2612 2685 1.798725 CGGCAATGCGCTTTCAGTG 60.799 57.895 9.73 0.00 41.91 3.66
2613 2686 1.444895 GGCAATGCGCTTTCAGTGG 60.445 57.895 9.73 0.00 41.91 4.00
2614 2687 1.444895 GCAATGCGCTTTCAGTGGG 60.445 57.895 9.73 0.00 37.77 4.61
2615 2688 1.865788 GCAATGCGCTTTCAGTGGGA 61.866 55.000 9.73 0.00 37.77 4.37
2616 2689 0.169672 CAATGCGCTTTCAGTGGGAG 59.830 55.000 9.73 0.00 0.00 4.30
2617 2690 0.962356 AATGCGCTTTCAGTGGGAGG 60.962 55.000 9.73 0.00 0.00 4.30
2618 2691 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
2619 2692 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
2620 2693 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
2621 2694 0.539051 CGCTTTCAGTGGGAGGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
2622 2695 1.741732 CGCTTTCAGTGGGAGGAGATG 60.742 57.143 0.00 0.00 0.00 2.90
2623 2696 1.280421 GCTTTCAGTGGGAGGAGATGT 59.720 52.381 0.00 0.00 0.00 3.06
2624 2697 2.290577 GCTTTCAGTGGGAGGAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
2625 2698 3.604582 CTTTCAGTGGGAGGAGATGTTC 58.395 50.000 0.00 0.00 0.00 3.18
2634 2707 3.274393 GGAGATGTTCCCGTCGATG 57.726 57.895 0.00 0.00 40.37 3.84
2635 2708 0.744874 GGAGATGTTCCCGTCGATGA 59.255 55.000 6.11 0.00 40.37 2.92
2636 2709 1.269309 GGAGATGTTCCCGTCGATGAG 60.269 57.143 6.11 0.00 40.37 2.90
2637 2710 0.747255 AGATGTTCCCGTCGATGAGG 59.253 55.000 6.11 6.01 0.00 3.86
2638 2711 0.744874 GATGTTCCCGTCGATGAGGA 59.255 55.000 6.11 8.42 0.00 3.71
2639 2712 0.747255 ATGTTCCCGTCGATGAGGAG 59.253 55.000 6.11 0.00 0.00 3.69
2640 2713 1.320344 TGTTCCCGTCGATGAGGAGG 61.320 60.000 6.11 0.00 0.00 4.30
2641 2714 2.423898 TTCCCGTCGATGAGGAGGC 61.424 63.158 6.11 0.00 0.00 4.70
2642 2715 4.271816 CCCGTCGATGAGGAGGCG 62.272 72.222 6.11 0.00 0.00 5.52
2643 2716 4.933064 CCGTCGATGAGGAGGCGC 62.933 72.222 6.11 0.00 0.00 6.53
2644 2717 4.933064 CGTCGATGAGGAGGCGCC 62.933 72.222 21.89 21.89 0.00 6.53
2653 2726 4.126524 GGAGGCGCCTACAATGAC 57.873 61.111 34.40 17.23 0.00 3.06
2654 2727 1.522569 GGAGGCGCCTACAATGACT 59.477 57.895 34.40 6.21 0.00 3.41
2655 2728 0.107654 GGAGGCGCCTACAATGACTT 60.108 55.000 34.40 5.29 0.00 3.01
2656 2729 1.679032 GGAGGCGCCTACAATGACTTT 60.679 52.381 34.40 4.65 0.00 2.66
2657 2730 1.398390 GAGGCGCCTACAATGACTTTG 59.602 52.381 32.97 0.00 41.36 2.77
2659 2732 2.027561 AGGCGCCTACAATGACTTTGTA 60.028 45.455 31.86 12.03 46.75 2.41
2681 2754 9.820229 TTGTAAATTTCAAGATAACATGTCGTC 57.180 29.630 0.00 0.05 0.00 4.20
2682 2755 9.214957 TGTAAATTTCAAGATAACATGTCGTCT 57.785 29.630 0.00 2.74 0.00 4.18
2683 2756 9.690434 GTAAATTTCAAGATAACATGTCGTCTC 57.310 33.333 11.92 2.16 0.00 3.36
2684 2757 6.910536 ATTTCAAGATAACATGTCGTCTCC 57.089 37.500 11.92 0.00 0.00 3.71
2685 2758 4.028852 TCAAGATAACATGTCGTCTCCG 57.971 45.455 11.92 7.89 0.00 4.63
2686 2759 3.442625 TCAAGATAACATGTCGTCTCCGT 59.557 43.478 11.92 0.00 35.01 4.69
2687 2760 3.694535 AGATAACATGTCGTCTCCGTC 57.305 47.619 0.00 0.00 35.01 4.79
2688 2761 3.280295 AGATAACATGTCGTCTCCGTCT 58.720 45.455 0.00 0.00 35.01 4.18
2689 2762 3.312973 AGATAACATGTCGTCTCCGTCTC 59.687 47.826 0.00 0.00 35.01 3.36
2690 2763 1.535833 AACATGTCGTCTCCGTCTCT 58.464 50.000 0.00 0.00 35.01 3.10
2691 2764 1.088306 ACATGTCGTCTCCGTCTCTC 58.912 55.000 0.00 0.00 35.01 3.20
2692 2765 0.026933 CATGTCGTCTCCGTCTCTCG 59.973 60.000 0.00 0.00 39.52 4.04
2701 2774 2.795297 CGTCTCTCGGAGGTGCTC 59.205 66.667 4.96 0.00 35.71 4.26
2702 2775 2.041115 CGTCTCTCGGAGGTGCTCA 61.041 63.158 4.96 0.00 35.71 4.26
2703 2776 1.380403 CGTCTCTCGGAGGTGCTCAT 61.380 60.000 4.96 0.00 35.71 2.90
2704 2777 1.681538 GTCTCTCGGAGGTGCTCATA 58.318 55.000 4.96 0.00 31.08 2.15
2705 2778 2.025155 GTCTCTCGGAGGTGCTCATAA 58.975 52.381 4.96 0.00 31.08 1.90
2706 2779 2.034053 GTCTCTCGGAGGTGCTCATAAG 59.966 54.545 4.96 0.00 31.08 1.73
2707 2780 1.339610 CTCTCGGAGGTGCTCATAAGG 59.660 57.143 4.96 0.00 31.08 2.69
2708 2781 0.390860 CTCGGAGGTGCTCATAAGGG 59.609 60.000 0.00 0.00 31.08 3.95
2709 2782 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
2710 2783 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
2711 2784 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
2712 2785 2.679082 GGAGGTGCTCATAAGGGTAGA 58.321 52.381 0.00 0.00 31.08 2.59
2713 2786 3.039011 GGAGGTGCTCATAAGGGTAGAA 58.961 50.000 0.00 0.00 31.08 2.10
2714 2787 3.648545 GGAGGTGCTCATAAGGGTAGAAT 59.351 47.826 0.00 0.00 31.08 2.40
2715 2788 4.503991 GGAGGTGCTCATAAGGGTAGAATG 60.504 50.000 0.00 0.00 31.08 2.67
2716 2789 4.040755 AGGTGCTCATAAGGGTAGAATGT 58.959 43.478 0.00 0.00 0.00 2.71
2717 2790 4.130118 GGTGCTCATAAGGGTAGAATGTG 58.870 47.826 0.00 0.00 0.00 3.21
2718 2791 3.561725 GTGCTCATAAGGGTAGAATGTGC 59.438 47.826 0.00 0.00 39.41 4.57
2719 2792 2.802816 GCTCATAAGGGTAGAATGTGCG 59.197 50.000 0.00 0.00 32.50 5.34
2720 2793 3.741388 GCTCATAAGGGTAGAATGTGCGT 60.741 47.826 0.00 0.00 32.50 5.24
2721 2794 3.792401 TCATAAGGGTAGAATGTGCGTG 58.208 45.455 0.00 0.00 0.00 5.34
2722 2795 3.196901 TCATAAGGGTAGAATGTGCGTGT 59.803 43.478 0.00 0.00 0.00 4.49
2723 2796 1.808411 AAGGGTAGAATGTGCGTGTG 58.192 50.000 0.00 0.00 0.00 3.82
2724 2797 0.685097 AGGGTAGAATGTGCGTGTGT 59.315 50.000 0.00 0.00 0.00 3.72
2725 2798 0.796312 GGGTAGAATGTGCGTGTGTG 59.204 55.000 0.00 0.00 0.00 3.82
2726 2799 0.165944 GGTAGAATGTGCGTGTGTGC 59.834 55.000 0.00 0.00 0.00 4.57
2727 2800 0.179250 GTAGAATGTGCGTGTGTGCG 60.179 55.000 0.00 0.00 37.81 5.34
2728 2801 0.598942 TAGAATGTGCGTGTGTGCGT 60.599 50.000 0.00 0.00 37.81 5.24
2729 2802 1.010125 GAATGTGCGTGTGTGCGTT 60.010 52.632 0.00 0.00 37.81 4.84
2730 2803 0.991770 GAATGTGCGTGTGTGCGTTC 60.992 55.000 0.00 0.00 37.81 3.95
2731 2804 1.710103 AATGTGCGTGTGTGCGTTCA 61.710 50.000 0.00 0.00 37.81 3.18
2732 2805 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
2733 2806 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2734 2807 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
2735 2808 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
2736 2809 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
2737 2810 1.977188 CGTGTGTGCGTTCATAGAGA 58.023 50.000 0.00 0.00 0.00 3.10
2738 2811 2.530177 CGTGTGTGCGTTCATAGAGAT 58.470 47.619 0.00 0.00 0.00 2.75
2739 2812 2.279921 CGTGTGTGCGTTCATAGAGATG 59.720 50.000 0.00 0.00 0.00 2.90
2740 2813 3.511699 GTGTGTGCGTTCATAGAGATGA 58.488 45.455 0.00 0.00 40.45 2.92
2741 2814 3.549471 GTGTGTGCGTTCATAGAGATGAG 59.451 47.826 0.00 0.00 43.03 2.90
2742 2815 3.193479 TGTGTGCGTTCATAGAGATGAGT 59.807 43.478 0.00 0.00 43.03 3.41
2743 2816 4.398044 TGTGTGCGTTCATAGAGATGAGTA 59.602 41.667 0.00 0.00 43.03 2.59
2744 2817 5.067805 TGTGTGCGTTCATAGAGATGAGTAT 59.932 40.000 0.00 0.00 43.03 2.12
2745 2818 6.262273 TGTGTGCGTTCATAGAGATGAGTATA 59.738 38.462 0.00 0.00 43.03 1.47
2746 2819 6.799441 GTGTGCGTTCATAGAGATGAGTATAG 59.201 42.308 0.00 0.00 43.03 1.31
2747 2820 6.486993 TGTGCGTTCATAGAGATGAGTATAGT 59.513 38.462 0.00 0.00 43.03 2.12
2748 2821 6.799441 GTGCGTTCATAGAGATGAGTATAGTG 59.201 42.308 0.00 0.00 43.03 2.74
2749 2822 6.486993 TGCGTTCATAGAGATGAGTATAGTGT 59.513 38.462 0.00 0.00 43.03 3.55
2750 2823 7.660208 TGCGTTCATAGAGATGAGTATAGTGTA 59.340 37.037 0.00 0.00 43.03 2.90
2751 2824 8.670135 GCGTTCATAGAGATGAGTATAGTGTAT 58.330 37.037 0.00 0.00 43.03 2.29
2765 2838 9.509855 GAGTATAGTGTATATATGAGCACTTGC 57.490 37.037 18.10 0.00 41.67 4.01
2802 2875 3.531934 AAAAAGTATACGTAGCGCCCT 57.468 42.857 2.29 0.00 0.00 5.19
2803 2876 2.789491 AAAGTATACGTAGCGCCCTC 57.211 50.000 2.29 0.00 0.00 4.30
2804 2877 0.590195 AAGTATACGTAGCGCCCTCG 59.410 55.000 2.29 9.51 39.07 4.63
2837 2910 7.413475 ACTCGTACGATCGTACTTAATGTAT 57.587 36.000 40.07 22.02 46.22 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 165 7.575414 ATTGGTTTTTGGGGTGTTTATTTTC 57.425 32.000 0.00 0.00 0.00 2.29
173 176 0.533755 TGCGCAATTGGTTTTTGGGG 60.534 50.000 8.16 0.00 37.46 4.96
182 185 3.573598 TGACAAAAGTATGCGCAATTGG 58.426 40.909 17.11 7.81 0.00 3.16
365 388 4.547367 GCGGGGGAGGATGTTCCG 62.547 72.222 0.00 0.00 42.75 4.30
434 457 2.203070 CATGGCCGCTAGGGTGAC 60.203 66.667 6.02 0.28 38.44 3.67
435 458 4.175337 GCATGGCCGCTAGGGTGA 62.175 66.667 6.02 0.00 38.44 4.02
436 459 3.704231 AAGCATGGCCGCTAGGGTG 62.704 63.158 5.49 0.00 42.89 4.61
437 460 2.983879 AAAGCATGGCCGCTAGGGT 61.984 57.895 5.49 0.00 42.89 4.34
438 461 2.124151 AAAGCATGGCCGCTAGGG 60.124 61.111 5.49 0.00 42.89 3.53
439 462 2.484062 CCAAAGCATGGCCGCTAGG 61.484 63.158 5.49 7.48 43.80 3.02
440 463 3.113745 CCAAAGCATGGCCGCTAG 58.886 61.111 5.49 2.28 43.80 3.42
519 543 3.457234 GCCTGCTTTGCAAAGTTAAACT 58.543 40.909 33.47 0.00 38.41 2.66
526 550 4.454728 TTTATAGGCCTGCTTTGCAAAG 57.545 40.909 30.70 30.70 38.41 2.77
620 644 1.885887 TGTGTGATGCCTTTGCTTACC 59.114 47.619 0.00 0.00 38.71 2.85
636 660 2.295909 AGTTGTGCCGCAAAATATGTGT 59.704 40.909 0.00 0.00 39.03 3.72
902 934 2.807045 CAGAGCACGTGTCGCCTC 60.807 66.667 18.38 14.47 0.00 4.70
934 966 0.106708 CACGGATCGAATGGGATGGT 59.893 55.000 0.00 0.00 0.00 3.55
957 989 0.472471 CTCTCCTCTCCTCTACGGCT 59.528 60.000 0.00 0.00 0.00 5.52
978 1010 1.370064 CGGTGGTCGGTCTTCCTTT 59.630 57.895 0.00 0.00 34.75 3.11
991 1023 1.495584 CGGAAATACATCGCCGGTGG 61.496 60.000 16.49 1.91 40.08 4.61
993 1025 4.431035 CGGAAATACATCGCCGGT 57.569 55.556 1.90 0.00 40.08 5.28
997 1029 2.935955 CGGCCGGAAATACATCGC 59.064 61.111 20.10 0.00 0.00 4.58
1286 1318 2.652079 CTGTGCGCGCATCCGATAG 61.652 63.158 38.62 22.36 36.29 2.08
1291 1323 3.558411 GAGTCTGTGCGCGCATCC 61.558 66.667 38.62 25.67 0.00 3.51
1325 1357 4.870426 TCATCGAAGAAAACAGAGCATACC 59.130 41.667 0.00 0.00 43.58 2.73
1326 1358 5.807520 TCTCATCGAAGAAAACAGAGCATAC 59.192 40.000 0.00 0.00 43.58 2.39
1327 1359 5.807520 GTCTCATCGAAGAAAACAGAGCATA 59.192 40.000 0.00 0.00 43.58 3.14
1348 1410 2.131294 GACACGGTGAGCGTCAGTCT 62.131 60.000 16.29 0.00 0.00 3.24
1919 1981 1.343681 ACGGCAGGGGAAGGATTACTA 60.344 52.381 0.00 0.00 0.00 1.82
1929 1999 1.600107 GTGATGTAACGGCAGGGGA 59.400 57.895 0.00 0.00 0.00 4.81
2024 2095 4.199310 TGATATTGGCAGCCTACAAAGTC 58.801 43.478 14.15 2.50 0.00 3.01
2034 2105 3.317149 TCAGCAATCTTGATATTGGCAGC 59.683 43.478 0.00 0.00 37.34 5.25
2116 2187 4.326826 CAGAACATTTTACCAGAGGCAGA 58.673 43.478 0.00 0.00 0.00 4.26
2124 2195 5.769662 AGAGAACATGCAGAACATTTTACCA 59.230 36.000 0.00 0.00 36.64 3.25
2141 2212 1.278985 ACGATGGATGCCAAGAGAACA 59.721 47.619 0.00 0.00 36.95 3.18
2148 2219 4.129380 CAAGATAAGACGATGGATGCCAA 58.871 43.478 0.00 0.00 36.95 4.52
2171 2242 2.032681 GACAACTCGCCCAAGCCT 59.967 61.111 0.00 0.00 34.57 4.58
2174 2245 2.372690 CGACGACAACTCGCCCAAG 61.373 63.158 0.00 0.00 44.33 3.61
2182 2253 1.085091 ATCTAGCGTCGACGACAACT 58.915 50.000 39.74 27.60 43.02 3.16
2198 2269 3.036429 GCTTCCTCACCCCGCATCT 62.036 63.158 0.00 0.00 0.00 2.90
2199 2270 2.514824 GCTTCCTCACCCCGCATC 60.515 66.667 0.00 0.00 0.00 3.91
2200 2271 4.115199 GGCTTCCTCACCCCGCAT 62.115 66.667 0.00 0.00 0.00 4.73
2221 2292 2.089980 GCAGGAGCACATGATTCTGTT 58.910 47.619 7.25 0.00 41.58 3.16
2270 2341 4.458397 CAGTCCCACCTACTCGTATTCTA 58.542 47.826 0.00 0.00 0.00 2.10
2271 2342 3.288964 CAGTCCCACCTACTCGTATTCT 58.711 50.000 0.00 0.00 0.00 2.40
2272 2343 2.361438 CCAGTCCCACCTACTCGTATTC 59.639 54.545 0.00 0.00 0.00 1.75
2273 2344 2.385803 CCAGTCCCACCTACTCGTATT 58.614 52.381 0.00 0.00 0.00 1.89
2274 2345 1.411216 CCCAGTCCCACCTACTCGTAT 60.411 57.143 0.00 0.00 0.00 3.06
2275 2346 0.033796 CCCAGTCCCACCTACTCGTA 60.034 60.000 0.00 0.00 0.00 3.43
2277 2348 2.722201 GCCCAGTCCCACCTACTCG 61.722 68.421 0.00 0.00 0.00 4.18
2278 2349 2.722201 CGCCCAGTCCCACCTACTC 61.722 68.421 0.00 0.00 0.00 2.59
2279 2350 2.683933 CGCCCAGTCCCACCTACT 60.684 66.667 0.00 0.00 0.00 2.57
2280 2351 4.468689 GCGCCCAGTCCCACCTAC 62.469 72.222 0.00 0.00 0.00 3.18
2387 2460 1.136141 CCGGCGCTACGTATACTACTG 60.136 57.143 7.64 0.00 0.00 2.74
2388 2461 1.151668 CCGGCGCTACGTATACTACT 58.848 55.000 7.64 0.00 0.00 2.57
2389 2462 0.453449 GCCGGCGCTACGTATACTAC 60.453 60.000 12.58 0.00 0.00 2.73
2390 2463 1.868997 GCCGGCGCTACGTATACTA 59.131 57.895 12.58 0.00 0.00 1.82
2391 2464 2.641559 GCCGGCGCTACGTATACT 59.358 61.111 12.58 0.00 0.00 2.12
2392 2465 2.715864 TTCGCCGGCGCTACGTATAC 62.716 60.000 42.78 0.00 39.59 1.47
2393 2466 2.542013 TTCGCCGGCGCTACGTATA 61.542 57.895 42.78 21.64 39.59 1.47
2395 2468 4.834892 GTTCGCCGGCGCTACGTA 62.835 66.667 42.78 23.30 39.59 3.57
2405 2478 2.398554 CCTCCATGTTGGTTCGCCG 61.399 63.158 0.00 0.00 39.03 6.46
2406 2479 0.608035 TTCCTCCATGTTGGTTCGCC 60.608 55.000 0.00 0.00 39.03 5.54
2407 2480 0.521735 GTTCCTCCATGTTGGTTCGC 59.478 55.000 0.00 0.00 39.03 4.70
2409 2482 2.554032 CACTGTTCCTCCATGTTGGTTC 59.446 50.000 0.00 0.00 39.03 3.62
2411 2484 1.202927 CCACTGTTCCTCCATGTTGGT 60.203 52.381 0.00 0.00 39.03 3.67
2412 2485 1.202927 ACCACTGTTCCTCCATGTTGG 60.203 52.381 0.00 0.00 39.43 3.77
2413 2486 2.276732 ACCACTGTTCCTCCATGTTG 57.723 50.000 0.00 0.00 0.00 3.33
2415 2488 3.054361 GGAATACCACTGTTCCTCCATGT 60.054 47.826 0.00 0.00 40.55 3.21
2416 2489 3.545703 GGAATACCACTGTTCCTCCATG 58.454 50.000 0.00 0.00 40.55 3.66
2417 2490 2.509964 GGGAATACCACTGTTCCTCCAT 59.490 50.000 4.36 0.00 42.76 3.41
2418 2491 1.913419 GGGAATACCACTGTTCCTCCA 59.087 52.381 4.36 0.00 42.76 3.86
2419 2492 1.913419 TGGGAATACCACTGTTCCTCC 59.087 52.381 4.36 0.00 46.80 4.30
2420 2493 2.681097 GCTGGGAATACCACTGTTCCTC 60.681 54.545 4.36 0.00 46.80 3.71
2421 2494 1.282157 GCTGGGAATACCACTGTTCCT 59.718 52.381 4.36 0.00 46.80 3.36
2422 2495 1.682087 GGCTGGGAATACCACTGTTCC 60.682 57.143 0.00 0.00 46.80 3.62
2423 2496 1.682087 GGGCTGGGAATACCACTGTTC 60.682 57.143 0.00 0.00 46.80 3.18
2424 2497 0.331616 GGGCTGGGAATACCACTGTT 59.668 55.000 0.00 0.00 46.80 3.16
2425 2498 0.550147 AGGGCTGGGAATACCACTGT 60.550 55.000 0.00 0.00 46.80 3.55
2426 2499 0.107017 CAGGGCTGGGAATACCACTG 60.107 60.000 0.00 0.00 46.80 3.66
2427 2500 1.281925 CCAGGGCTGGGAATACCACT 61.282 60.000 0.00 0.00 46.80 4.00
2428 2501 1.227383 CCAGGGCTGGGAATACCAC 59.773 63.158 0.00 0.00 46.80 4.16
2438 2511 0.322008 GTTCCTTCAGACCAGGGCTG 60.322 60.000 17.61 17.61 34.71 4.85
2439 2512 0.768221 TGTTCCTTCAGACCAGGGCT 60.768 55.000 0.00 0.00 31.50 5.19
2440 2513 0.322008 CTGTTCCTTCAGACCAGGGC 60.322 60.000 0.00 0.00 37.61 5.19
2441 2514 1.059913 ACTGTTCCTTCAGACCAGGG 58.940 55.000 0.65 0.00 38.63 4.45
2442 2515 1.271054 CCACTGTTCCTTCAGACCAGG 60.271 57.143 0.65 0.00 38.63 4.45
2443 2516 1.417890 ACCACTGTTCCTTCAGACCAG 59.582 52.381 0.65 0.00 38.63 4.00
2444 2517 1.507140 ACCACTGTTCCTTCAGACCA 58.493 50.000 0.65 0.00 38.63 4.02
2445 2518 3.983044 ATACCACTGTTCCTTCAGACC 57.017 47.619 0.65 0.00 38.63 3.85
2446 2519 4.254492 GGAATACCACTGTTCCTTCAGAC 58.746 47.826 0.65 0.00 40.55 3.51
2447 2520 3.263425 GGGAATACCACTGTTCCTTCAGA 59.737 47.826 4.36 0.00 42.76 3.27
2448 2521 3.009033 TGGGAATACCACTGTTCCTTCAG 59.991 47.826 4.36 0.00 46.80 3.02
2449 2522 2.983192 TGGGAATACCACTGTTCCTTCA 59.017 45.455 4.36 0.00 46.80 3.02
2450 2523 3.610911 CTGGGAATACCACTGTTCCTTC 58.389 50.000 4.36 0.00 46.80 3.46
2451 2524 2.290960 GCTGGGAATACCACTGTTCCTT 60.291 50.000 4.36 0.00 46.80 3.36
2452 2525 1.282157 GCTGGGAATACCACTGTTCCT 59.718 52.381 4.36 0.00 46.80 3.36
2453 2526 1.682087 GGCTGGGAATACCACTGTTCC 60.682 57.143 0.00 0.00 46.80 3.62
2454 2527 1.682087 GGGCTGGGAATACCACTGTTC 60.682 57.143 0.00 0.00 46.80 3.18
2455 2528 0.331616 GGGCTGGGAATACCACTGTT 59.668 55.000 0.00 0.00 46.80 3.16
2456 2529 0.844661 TGGGCTGGGAATACCACTGT 60.845 55.000 0.00 0.00 46.80 3.55
2457 2530 0.394352 GTGGGCTGGGAATACCACTG 60.394 60.000 5.50 0.00 46.80 3.66
2458 2531 1.999346 GTGGGCTGGGAATACCACT 59.001 57.895 5.50 0.00 46.80 4.00
2459 2532 1.076995 GGTGGGCTGGGAATACCAC 60.077 63.158 4.19 4.19 46.80 4.16
2461 2534 1.227383 CTGGTGGGCTGGGAATACC 59.773 63.158 0.00 0.00 40.81 2.73
2462 2535 1.227383 CCTGGTGGGCTGGGAATAC 59.773 63.158 0.00 0.00 0.00 1.89
2463 2536 3.754043 CCTGGTGGGCTGGGAATA 58.246 61.111 0.00 0.00 0.00 1.75
2473 2546 0.035056 CAGGACTTAAGCCCTGGTGG 60.035 60.000 25.79 4.41 44.68 4.61
2474 2547 3.558674 CAGGACTTAAGCCCTGGTG 57.441 57.895 25.79 5.63 44.68 4.17
2478 2551 0.693049 CACACCAGGACTTAAGCCCT 59.307 55.000 4.19 4.19 0.00 5.19
2479 2552 0.960861 GCACACCAGGACTTAAGCCC 60.961 60.000 1.29 0.00 0.00 5.19
2480 2553 0.036875 AGCACACCAGGACTTAAGCC 59.963 55.000 1.29 5.13 0.00 4.35
2481 2554 1.443802 GAGCACACCAGGACTTAAGC 58.556 55.000 1.29 0.00 0.00 3.09
2482 2555 1.714794 CGAGCACACCAGGACTTAAG 58.285 55.000 0.00 0.00 0.00 1.85
2483 2556 0.320421 GCGAGCACACCAGGACTTAA 60.320 55.000 0.00 0.00 0.00 1.85
2484 2557 1.292223 GCGAGCACACCAGGACTTA 59.708 57.895 0.00 0.00 0.00 2.24
2485 2558 2.031163 GCGAGCACACCAGGACTT 59.969 61.111 0.00 0.00 0.00 3.01
2486 2559 2.116983 AATGCGAGCACACCAGGACT 62.117 55.000 0.00 0.00 0.00 3.85
2487 2560 0.391130 TAATGCGAGCACACCAGGAC 60.391 55.000 0.00 0.00 0.00 3.85
2488 2561 0.541392 ATAATGCGAGCACACCAGGA 59.459 50.000 0.00 0.00 0.00 3.86
2489 2562 1.382522 AATAATGCGAGCACACCAGG 58.617 50.000 0.00 0.00 0.00 4.45
2490 2563 3.492421 AAAATAATGCGAGCACACCAG 57.508 42.857 0.00 0.00 0.00 4.00
2491 2564 3.932545 AAAAATAATGCGAGCACACCA 57.067 38.095 0.00 0.00 0.00 4.17
2508 2581 7.333174 GCCGGAAATCCTGAAATAAATCAAAAA 59.667 33.333 5.05 0.00 0.00 1.94
2509 2582 6.816140 GCCGGAAATCCTGAAATAAATCAAAA 59.184 34.615 5.05 0.00 0.00 2.44
2510 2583 6.337356 GCCGGAAATCCTGAAATAAATCAAA 58.663 36.000 5.05 0.00 0.00 2.69
2511 2584 5.449862 CGCCGGAAATCCTGAAATAAATCAA 60.450 40.000 5.05 0.00 0.00 2.57
2512 2585 4.036262 CGCCGGAAATCCTGAAATAAATCA 59.964 41.667 5.05 0.00 0.00 2.57
2513 2586 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
2514 2587 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
2515 2588 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
2516 2589 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
2517 2590 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
2518 2591 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
2519 2592 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
2520 2593 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
2521 2594 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
2522 2595 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
2523 2596 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
2540 2613 1.876156 CATCATCCTCCCGCTAAAAGC 59.124 52.381 0.00 0.00 38.02 3.51
2541 2614 1.876156 GCATCATCCTCCCGCTAAAAG 59.124 52.381 0.00 0.00 0.00 2.27
2542 2615 1.490490 AGCATCATCCTCCCGCTAAAA 59.510 47.619 0.00 0.00 0.00 1.52
2543 2616 1.131638 AGCATCATCCTCCCGCTAAA 58.868 50.000 0.00 0.00 0.00 1.85
2544 2617 1.131638 AAGCATCATCCTCCCGCTAA 58.868 50.000 0.00 0.00 31.36 3.09
2545 2618 0.394192 CAAGCATCATCCTCCCGCTA 59.606 55.000 0.00 0.00 31.36 4.26
2546 2619 1.147824 CAAGCATCATCCTCCCGCT 59.852 57.895 0.00 0.00 33.45 5.52
2547 2620 2.550101 GCAAGCATCATCCTCCCGC 61.550 63.158 0.00 0.00 0.00 6.13
2548 2621 0.536687 ATGCAAGCATCATCCTCCCG 60.537 55.000 0.86 0.00 29.42 5.14
2549 2622 1.700955 AATGCAAGCATCATCCTCCC 58.299 50.000 8.14 0.00 35.31 4.30
2550 2623 5.243283 AGAAATAATGCAAGCATCATCCTCC 59.757 40.000 8.14 0.00 35.31 4.30
2551 2624 6.328641 AGAAATAATGCAAGCATCATCCTC 57.671 37.500 8.14 0.75 35.31 3.71
2552 2625 7.229308 TCTAGAAATAATGCAAGCATCATCCT 58.771 34.615 8.14 3.64 35.31 3.24
2553 2626 7.444629 TCTAGAAATAATGCAAGCATCATCC 57.555 36.000 8.14 0.00 35.31 3.51
2554 2627 9.909644 AAATCTAGAAATAATGCAAGCATCATC 57.090 29.630 8.14 4.92 35.31 2.92
2570 2643 9.120538 CCGGAAATCCTGAAATAAATCTAGAAA 57.879 33.333 0.00 0.00 0.00 2.52
2571 2644 7.228706 GCCGGAAATCCTGAAATAAATCTAGAA 59.771 37.037 5.05 0.00 0.00 2.10
2572 2645 6.710744 GCCGGAAATCCTGAAATAAATCTAGA 59.289 38.462 5.05 0.00 0.00 2.43
2573 2646 6.486657 TGCCGGAAATCCTGAAATAAATCTAG 59.513 38.462 5.05 0.00 0.00 2.43
2574 2647 6.361433 TGCCGGAAATCCTGAAATAAATCTA 58.639 36.000 5.05 0.00 0.00 1.98
2575 2648 5.200483 TGCCGGAAATCCTGAAATAAATCT 58.800 37.500 5.05 0.00 0.00 2.40
2576 2649 5.514274 TGCCGGAAATCCTGAAATAAATC 57.486 39.130 5.05 0.00 0.00 2.17
2577 2650 5.930837 TTGCCGGAAATCCTGAAATAAAT 57.069 34.783 5.05 0.00 0.00 1.40
2578 2651 5.659463 CATTGCCGGAAATCCTGAAATAAA 58.341 37.500 4.04 0.00 0.00 1.40
2579 2652 4.441356 GCATTGCCGGAAATCCTGAAATAA 60.441 41.667 4.04 0.00 0.00 1.40
2580 2653 3.068024 GCATTGCCGGAAATCCTGAAATA 59.932 43.478 4.04 0.00 0.00 1.40
2581 2654 2.159057 GCATTGCCGGAAATCCTGAAAT 60.159 45.455 4.04 0.00 0.00 2.17
2582 2655 1.204467 GCATTGCCGGAAATCCTGAAA 59.796 47.619 4.04 0.00 0.00 2.69
2583 2656 0.817013 GCATTGCCGGAAATCCTGAA 59.183 50.000 4.04 0.00 0.00 3.02
2584 2657 1.375853 CGCATTGCCGGAAATCCTGA 61.376 55.000 4.04 0.00 0.00 3.86
2585 2658 1.064621 CGCATTGCCGGAAATCCTG 59.935 57.895 4.04 0.00 0.00 3.86
2586 2659 2.774799 GCGCATTGCCGGAAATCCT 61.775 57.895 4.04 0.00 37.76 3.24
2587 2660 2.278792 GCGCATTGCCGGAAATCC 60.279 61.111 4.04 0.00 37.76 3.01
2596 2669 1.444895 CCCACTGAAAGCGCATTGC 60.445 57.895 11.47 0.00 46.98 3.56
2597 2670 0.169672 CTCCCACTGAAAGCGCATTG 59.830 55.000 11.47 0.00 37.60 2.82
2598 2671 0.962356 CCTCCCACTGAAAGCGCATT 60.962 55.000 11.47 2.75 37.60 3.56
2599 2672 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
2600 2673 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
2601 2674 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
2602 2675 0.539051 ATCTCCTCCCACTGAAAGCG 59.461 55.000 0.00 0.00 37.60 4.68
2603 2676 1.280421 ACATCTCCTCCCACTGAAAGC 59.720 52.381 0.00 0.00 37.60 3.51
2604 2677 3.604582 GAACATCTCCTCCCACTGAAAG 58.395 50.000 0.00 0.00 42.29 2.62
2605 2678 2.305927 GGAACATCTCCTCCCACTGAAA 59.694 50.000 0.00 0.00 41.61 2.69
2606 2679 1.909302 GGAACATCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
2607 2680 1.573108 GGAACATCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
2612 2685 1.823976 GACGGGAACATCTCCTCCC 59.176 63.158 0.00 0.00 46.97 4.30
2613 2686 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
2614 2687 1.033574 ATCGACGGGAACATCTCCTC 58.966 55.000 0.00 0.00 44.68 3.71
2615 2688 0.747255 CATCGACGGGAACATCTCCT 59.253 55.000 0.00 0.00 44.68 3.69
2616 2689 0.744874 TCATCGACGGGAACATCTCC 59.255 55.000 0.00 0.00 44.54 3.71
2617 2690 1.269309 CCTCATCGACGGGAACATCTC 60.269 57.143 0.00 0.00 0.00 2.75
2618 2691 0.747255 CCTCATCGACGGGAACATCT 59.253 55.000 0.00 0.00 0.00 2.90
2619 2692 0.744874 TCCTCATCGACGGGAACATC 59.255 55.000 0.00 0.00 0.00 3.06
2620 2693 0.747255 CTCCTCATCGACGGGAACAT 59.253 55.000 0.00 0.00 0.00 2.71
2621 2694 1.320344 CCTCCTCATCGACGGGAACA 61.320 60.000 0.00 0.00 0.00 3.18
2622 2695 1.437986 CCTCCTCATCGACGGGAAC 59.562 63.158 0.00 0.00 0.00 3.62
2623 2696 2.423898 GCCTCCTCATCGACGGGAA 61.424 63.158 0.00 0.00 0.00 3.97
2624 2697 2.833582 GCCTCCTCATCGACGGGA 60.834 66.667 0.00 0.00 0.00 5.14
2625 2698 4.271816 CGCCTCCTCATCGACGGG 62.272 72.222 0.00 0.00 0.00 5.28
2626 2699 4.933064 GCGCCTCCTCATCGACGG 62.933 72.222 0.00 0.00 0.00 4.79
2627 2700 4.933064 GGCGCCTCCTCATCGACG 62.933 72.222 22.15 0.00 0.00 5.12
2628 2701 2.194212 TAGGCGCCTCCTCATCGAC 61.194 63.158 36.73 0.00 43.20 4.20
2629 2702 2.194212 GTAGGCGCCTCCTCATCGA 61.194 63.158 36.73 10.36 43.20 3.59
2630 2703 2.016393 TTGTAGGCGCCTCCTCATCG 62.016 60.000 36.73 0.00 43.20 3.84
2631 2704 0.394565 ATTGTAGGCGCCTCCTCATC 59.605 55.000 36.73 17.21 43.20 2.92
2632 2705 0.107456 CATTGTAGGCGCCTCCTCAT 59.893 55.000 36.73 18.14 43.20 2.90
2633 2706 0.975556 TCATTGTAGGCGCCTCCTCA 60.976 55.000 36.73 26.44 43.20 3.86
2634 2707 0.530870 GTCATTGTAGGCGCCTCCTC 60.531 60.000 36.73 24.11 43.20 3.71
2636 2709 0.107654 AAGTCATTGTAGGCGCCTCC 60.108 55.000 36.73 24.70 0.00 4.30
2637 2710 1.398390 CAAAGTCATTGTAGGCGCCTC 59.602 52.381 36.73 24.38 34.16 4.70
2638 2711 1.453155 CAAAGTCATTGTAGGCGCCT 58.547 50.000 34.85 34.85 34.16 5.52
2639 2712 3.996825 CAAAGTCATTGTAGGCGCC 57.003 52.632 21.89 21.89 34.16 6.53
2655 2728 9.820229 GACGACATGTTATCTTGAAATTTACAA 57.180 29.630 0.00 0.00 0.00 2.41
2656 2729 9.214957 AGACGACATGTTATCTTGAAATTTACA 57.785 29.630 0.00 0.00 0.00 2.41
2657 2730 9.690434 GAGACGACATGTTATCTTGAAATTTAC 57.310 33.333 12.58 0.00 0.00 2.01
2658 2731 8.879759 GGAGACGACATGTTATCTTGAAATTTA 58.120 33.333 12.58 0.00 0.00 1.40
2659 2732 7.752695 GGAGACGACATGTTATCTTGAAATTT 58.247 34.615 12.58 0.00 0.00 1.82
2660 2733 7.308782 GGAGACGACATGTTATCTTGAAATT 57.691 36.000 12.58 0.00 0.00 1.82
2661 2734 6.910536 GGAGACGACATGTTATCTTGAAAT 57.089 37.500 12.58 0.00 0.00 2.17
2684 2757 1.380403 ATGAGCACCTCCGAGAGACG 61.380 60.000 0.00 0.00 42.18 4.18
2685 2758 1.681538 TATGAGCACCTCCGAGAGAC 58.318 55.000 0.00 0.00 0.00 3.36
2686 2759 2.302260 CTTATGAGCACCTCCGAGAGA 58.698 52.381 0.00 0.00 0.00 3.10
2687 2760 1.339610 CCTTATGAGCACCTCCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2688 2761 1.403814 CCTTATGAGCACCTCCGAGA 58.596 55.000 0.00 0.00 0.00 4.04
2689 2762 0.390860 CCCTTATGAGCACCTCCGAG 59.609 60.000 0.00 0.00 0.00 4.63
2690 2763 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
2691 2764 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
2692 2765 2.679082 TCTACCCTTATGAGCACCTCC 58.321 52.381 0.00 0.00 0.00 4.30
2693 2766 4.101741 ACATTCTACCCTTATGAGCACCTC 59.898 45.833 0.00 0.00 0.00 3.85
2694 2767 4.040755 ACATTCTACCCTTATGAGCACCT 58.959 43.478 0.00 0.00 0.00 4.00
2695 2768 4.130118 CACATTCTACCCTTATGAGCACC 58.870 47.826 0.00 0.00 0.00 5.01
2696 2769 3.561725 GCACATTCTACCCTTATGAGCAC 59.438 47.826 0.00 0.00 36.37 4.40
2697 2770 3.741075 CGCACATTCTACCCTTATGAGCA 60.741 47.826 0.00 0.00 36.20 4.26
2698 2771 2.802816 CGCACATTCTACCCTTATGAGC 59.197 50.000 0.00 0.00 34.10 4.26
2699 2772 3.804325 CACGCACATTCTACCCTTATGAG 59.196 47.826 0.00 0.00 0.00 2.90
2700 2773 3.196901 ACACGCACATTCTACCCTTATGA 59.803 43.478 0.00 0.00 0.00 2.15
2701 2774 3.309682 CACACGCACATTCTACCCTTATG 59.690 47.826 0.00 0.00 0.00 1.90
2702 2775 3.055385 ACACACGCACATTCTACCCTTAT 60.055 43.478 0.00 0.00 0.00 1.73
2703 2776 2.300723 ACACACGCACATTCTACCCTTA 59.699 45.455 0.00 0.00 0.00 2.69
2704 2777 1.071699 ACACACGCACATTCTACCCTT 59.928 47.619 0.00 0.00 0.00 3.95
2705 2778 0.685097 ACACACGCACATTCTACCCT 59.315 50.000 0.00 0.00 0.00 4.34
2706 2779 0.796312 CACACACGCACATTCTACCC 59.204 55.000 0.00 0.00 0.00 3.69
2707 2780 0.165944 GCACACACGCACATTCTACC 59.834 55.000 0.00 0.00 0.00 3.18
2708 2781 0.179250 CGCACACACGCACATTCTAC 60.179 55.000 0.00 0.00 0.00 2.59
2709 2782 0.598942 ACGCACACACGCACATTCTA 60.599 50.000 0.00 0.00 36.19 2.10
2710 2783 1.436195 AACGCACACACGCACATTCT 61.436 50.000 0.00 0.00 36.19 2.40
2711 2784 0.991770 GAACGCACACACGCACATTC 60.992 55.000 0.00 0.00 36.19 2.67
2712 2785 1.010125 GAACGCACACACGCACATT 60.010 52.632 0.00 0.00 36.19 2.71
2713 2786 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
2714 2787 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2715 2788 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
2716 2789 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
2717 2790 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
2718 2791 1.977188 TCTCTATGAACGCACACACG 58.023 50.000 0.00 0.00 39.50 4.49
2719 2792 3.511699 TCATCTCTATGAACGCACACAC 58.488 45.455 0.00 0.00 39.20 3.82
2720 2793 3.193479 ACTCATCTCTATGAACGCACACA 59.807 43.478 0.00 0.00 41.57 3.72
2721 2794 3.775202 ACTCATCTCTATGAACGCACAC 58.225 45.455 0.00 0.00 41.57 3.82
2722 2795 5.774498 ATACTCATCTCTATGAACGCACA 57.226 39.130 0.00 0.00 41.57 4.57
2723 2796 6.799441 CACTATACTCATCTCTATGAACGCAC 59.201 42.308 0.00 0.00 41.57 5.34
2724 2797 6.486993 ACACTATACTCATCTCTATGAACGCA 59.513 38.462 0.00 0.00 41.57 5.24
2725 2798 6.904498 ACACTATACTCATCTCTATGAACGC 58.096 40.000 0.00 0.00 41.57 4.84
2739 2812 9.509855 GCAAGTGCTCATATATACACTATACTC 57.490 37.037 12.91 2.31 42.34 2.59
2740 2813 8.184848 CGCAAGTGCTCATATATACACTATACT 58.815 37.037 12.91 0.00 42.34 2.12
2741 2814 8.329066 CGCAAGTGCTCATATATACACTATAC 57.671 38.462 12.91 7.20 42.34 1.47
2782 2855 3.451526 GAGGGCGCTACGTATACTTTTT 58.548 45.455 7.64 0.00 0.00 1.94
2783 2856 2.542411 CGAGGGCGCTACGTATACTTTT 60.542 50.000 7.64 0.00 0.00 2.27
2784 2857 1.002033 CGAGGGCGCTACGTATACTTT 60.002 52.381 7.64 0.00 0.00 2.66
2785 2858 0.590195 CGAGGGCGCTACGTATACTT 59.410 55.000 7.64 0.00 0.00 2.24
2786 2859 2.242113 CGAGGGCGCTACGTATACT 58.758 57.895 7.64 0.00 0.00 2.12
2787 2860 4.834828 CGAGGGCGCTACGTATAC 57.165 61.111 7.64 0.00 0.00 1.47
2800 2873 1.534595 GTACGAGTACCCTATGCGAGG 59.465 57.143 2.13 0.00 46.25 4.63
2801 2874 1.194098 CGTACGAGTACCCTATGCGAG 59.806 57.143 10.44 0.00 32.61 5.03
2802 2875 1.202521 TCGTACGAGTACCCTATGCGA 60.203 52.381 15.28 0.00 32.61 5.10
2803 2876 1.220529 TCGTACGAGTACCCTATGCG 58.779 55.000 15.28 0.00 32.61 4.73
2804 2877 2.159734 CGATCGTACGAGTACCCTATGC 60.160 54.545 23.89 2.09 35.09 3.14
2805 2878 3.062763 ACGATCGTACGAGTACCCTATG 58.937 50.000 21.32 7.36 37.03 2.23
2806 2879 3.393089 ACGATCGTACGAGTACCCTAT 57.607 47.619 21.32 3.57 37.03 2.57
2807 2880 2.890808 ACGATCGTACGAGTACCCTA 57.109 50.000 21.32 0.00 37.03 3.53
2837 2910 6.183361 ACGACTATACAGTACAATCTCCCCTA 60.183 42.308 0.00 0.00 34.21 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.