Multiple sequence alignment - TraesCS5D01G393100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G393100 chr5D 100.000 5850 0 0 1 5850 461219541 461213692 0.000000e+00 10804.0
1 TraesCS5D01G393100 chr5D 100.000 28 0 0 3977 4004 461215508 461215481 1.100000e-02 52.8
2 TraesCS5D01G393100 chr5D 100.000 28 0 0 4034 4061 461215565 461215538 1.100000e-02 52.8
3 TraesCS5D01G393100 chr5B 95.382 2577 72 15 2682 5231 567157415 567154859 0.000000e+00 4056.0
4 TraesCS5D01G393100 chr5B 92.545 2656 114 32 12 2650 567160420 567157832 0.000000e+00 3731.0
5 TraesCS5D01G393100 chr5B 86.301 219 11 8 5651 5850 567154807 567154589 2.740000e-53 220.0
6 TraesCS5D01G393100 chr5B 91.892 111 9 0 5231 5341 661211422 661211532 7.850000e-34 156.0
7 TraesCS5D01G393100 chr5B 96.491 57 2 0 5340 5396 567154860 567154804 1.740000e-15 95.3
8 TraesCS5D01G393100 chr5B 97.872 47 1 0 2643 2689 567157646 567157600 1.350000e-11 82.4
9 TraesCS5D01G393100 chr5B 100.000 28 0 0 3977 4004 567156058 567156031 1.100000e-02 52.8
10 TraesCS5D01G393100 chr5B 100.000 28 0 0 4034 4061 567156115 567156088 1.100000e-02 52.8
11 TraesCS5D01G393100 chr5A 93.984 2593 86 27 2512 5078 581304393 581301845 0.000000e+00 3860.0
12 TraesCS5D01G393100 chr5A 92.487 2103 104 23 394 2467 581306468 581304391 0.000000e+00 2959.0
13 TraesCS5D01G393100 chr5A 86.486 222 8 7 5651 5850 581301676 581301455 2.120000e-54 224.0
14 TraesCS5D01G393100 chr5A 96.491 57 2 0 5340 5396 581301729 581301673 1.740000e-15 95.3
15 TraesCS5D01G393100 chr2B 91.760 267 20 2 5390 5654 166592382 166592116 2.570000e-98 370.0
16 TraesCS5D01G393100 chr2B 91.288 264 19 4 5394 5654 206286918 206287180 2.000000e-94 357.0
17 TraesCS5D01G393100 chr7B 91.698 265 21 1 5394 5657 598296407 598296143 3.330000e-97 366.0
18 TraesCS5D01G393100 chr7B 91.255 263 21 2 5394 5654 436122807 436122545 2.000000e-94 357.0
19 TraesCS5D01G393100 chr7B 91.221 262 21 2 5394 5653 627876219 627876480 7.210000e-94 355.0
20 TraesCS5D01G393100 chr7B 90.000 110 11 0 5234 5343 504473212 504473103 6.110000e-30 143.0
21 TraesCS5D01G393100 chr1B 91.321 265 22 1 5392 5655 538625639 538625375 1.550000e-95 361.0
22 TraesCS5D01G393100 chr6B 90.406 271 24 2 5386 5654 571454137 571453867 7.210000e-94 355.0
23 TraesCS5D01G393100 chr1D 91.221 262 22 1 5393 5653 76971213 76970952 7.210000e-94 355.0
24 TraesCS5D01G393100 chr2D 90.335 269 25 1 5392 5659 112871212 112870944 9.330000e-93 351.0
25 TraesCS5D01G393100 chr4B 90.090 111 11 0 5231 5341 27978276 27978386 1.700000e-30 145.0
26 TraesCS5D01G393100 chr2A 80.220 91 15 3 1 89 670748847 670748758 1.360000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G393100 chr5D 461213692 461219541 5849 True 10804.000000 10804 100.000 1 5850 1 chr5D.!!$R1 5849
1 TraesCS5D01G393100 chr5B 567154589 567160420 5831 True 1184.328571 4056 95.513 12 5850 7 chr5B.!!$R1 5838
2 TraesCS5D01G393100 chr5A 581301455 581306468 5013 True 1784.575000 3860 92.362 394 5850 4 chr5A.!!$R1 5456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 373 0.179009 CGCCATCCCTGTCATCCAAT 60.179 55.000 0.00 0.00 0.00 3.16 F
743 753 0.387202 CCATTTGGCAAACACCGTGA 59.613 50.000 16.00 0.00 0.00 4.35 F
1472 1492 0.394216 TTGGCAATCGAGTGGGGATG 60.394 55.000 15.48 0.00 0.00 3.51 F
2265 2304 0.036732 GTGTTCCTGTCATGCTGGGA 59.963 55.000 11.26 5.17 36.89 4.37 F
2272 2311 0.251253 TGTCATGCTGGGATGTTGCA 60.251 50.000 2.31 0.00 41.13 4.08 F
2749 3176 4.219507 TCAACTTGTTTTTGCTTCACCTCA 59.780 37.500 0.00 0.00 0.00 3.86 F
4122 4578 2.875933 ACACTTACATGTCCACGGTTTG 59.124 45.455 0.00 0.00 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2297 0.033781 GCTTTTGCAACATCCCAGCA 59.966 50.000 0.0 0.0 46.58 4.41 R
2259 2298 2.831597 GCTTTTGCAACATCCCAGC 58.168 52.632 0.0 0.0 46.58 4.85 R
3427 3878 3.149196 GCTGAAAATCTCAAGGGACACA 58.851 45.455 0.0 0.0 32.17 3.72 R
3904 4360 1.140852 TCATTAGTTCATCCCTGCCCG 59.859 52.381 0.0 0.0 0.00 6.13 R
4122 4578 1.376812 CACCGCCTCCCCACTTAAC 60.377 63.158 0.0 0.0 0.00 2.01 R
4591 5048 2.277084 GAACAGGCGACGGATGTAAAT 58.723 47.619 0.0 0.0 0.00 1.40 R
4967 5424 0.106015 GCCATTAGCCCATTCCCTGT 60.106 55.000 0.0 0.0 34.35 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.990939 TGTTCAAATGATGCAAATTGAAAGGA 59.009 30.769 16.21 6.08 41.77 3.36
42 43 9.685828 CAAATGATGCAAATTGAAAGGAAAAAT 57.314 25.926 0.00 0.00 0.00 1.82
50 51 9.977762 GCAAATTGAAAGGAAAAATAATAGCAG 57.022 29.630 0.00 0.00 0.00 4.24
71 72 8.854614 AGCAGAAGTGTTTGAAAAGTAGATAT 57.145 30.769 0.00 0.00 0.00 1.63
115 116 7.194607 ACAGAAACACTCACATTTAGACATG 57.805 36.000 0.00 0.00 0.00 3.21
129 130 0.526524 GACATGTCTCCCGCTCTTCG 60.527 60.000 18.83 0.00 38.08 3.79
130 131 1.251527 ACATGTCTCCCGCTCTTCGT 61.252 55.000 0.00 0.00 36.19 3.85
131 132 0.738975 CATGTCTCCCGCTCTTCGTA 59.261 55.000 0.00 0.00 36.19 3.43
211 212 8.299570 ACTTGCAAGACATAAAGTATTTTCTGG 58.700 33.333 32.50 0.00 40.09 3.86
218 219 6.785191 ACATAAAGTATTTTCTGGCATCGTG 58.215 36.000 0.00 0.00 40.09 4.35
235 236 1.626825 CGTGGAAGGGGAACTAAAGGA 59.373 52.381 0.00 0.00 0.00 3.36
240 241 4.107311 TGGAAGGGGAACTAAAGGAAACAT 59.893 41.667 0.00 0.00 0.00 2.71
243 244 2.496070 GGGGAACTAAAGGAAACATGGC 59.504 50.000 0.00 0.00 0.00 4.40
253 254 1.821136 GGAAACATGGCTGGAAGGAAG 59.179 52.381 0.00 0.00 0.00 3.46
266 267 1.757699 GAAGGAAGAGGTATGGTCGCT 59.242 52.381 0.00 0.00 0.00 4.93
273 274 3.567397 AGAGGTATGGTCGCTATTCAGT 58.433 45.455 0.00 0.00 0.00 3.41
290 291 2.159379 TCAGTCATCAGATTCACCGACG 60.159 50.000 0.00 0.00 0.00 5.12
314 315 4.043435 GGGATGAAAAGGTAGGCCATCTAT 59.957 45.833 5.01 0.00 35.31 1.98
318 319 0.603569 AAGGTAGGCCATCTATCGCG 59.396 55.000 5.01 0.00 34.32 5.87
323 324 1.664965 GGCCATCTATCGCGTCCAC 60.665 63.158 5.77 0.00 0.00 4.02
361 362 1.077716 ACACTTTAGGCGCCATCCC 60.078 57.895 31.54 0.00 0.00 3.85
362 363 1.224592 CACTTTAGGCGCCATCCCT 59.775 57.895 31.54 10.27 36.47 4.20
364 365 1.224592 CTTTAGGCGCCATCCCTGT 59.775 57.895 31.54 8.51 33.88 4.00
365 366 0.815615 CTTTAGGCGCCATCCCTGTC 60.816 60.000 31.54 0.00 33.88 3.51
366 367 1.558167 TTTAGGCGCCATCCCTGTCA 61.558 55.000 31.54 0.00 33.88 3.58
367 368 1.344953 TTAGGCGCCATCCCTGTCAT 61.345 55.000 31.54 5.89 33.88 3.06
368 369 1.758440 TAGGCGCCATCCCTGTCATC 61.758 60.000 31.54 0.00 33.88 2.92
369 370 2.592861 GCGCCATCCCTGTCATCC 60.593 66.667 0.00 0.00 0.00 3.51
370 371 2.910360 CGCCATCCCTGTCATCCA 59.090 61.111 0.00 0.00 0.00 3.41
371 372 1.224315 CGCCATCCCTGTCATCCAA 59.776 57.895 0.00 0.00 0.00 3.53
372 373 0.179009 CGCCATCCCTGTCATCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
373 374 1.325355 GCCATCCCTGTCATCCAATG 58.675 55.000 0.00 0.00 0.00 2.82
374 375 1.991121 CCATCCCTGTCATCCAATGG 58.009 55.000 0.00 0.00 0.00 3.16
375 376 1.216175 CCATCCCTGTCATCCAATGGT 59.784 52.381 0.00 0.00 31.15 3.55
381 382 2.357465 CCTGTCATCCAATGGTGGTGAT 60.357 50.000 0.00 0.00 46.11 3.06
390 391 2.617308 CAATGGTGGTGATGATGAGCTC 59.383 50.000 6.82 6.82 0.00 4.09
415 416 7.308782 GATTCAAATCGTCCTTACACAGATT 57.691 36.000 0.00 0.00 33.50 2.40
419 420 6.934645 TCAAATCGTCCTTACACAGATTCTTT 59.065 34.615 0.00 0.00 31.91 2.52
459 460 0.819259 CACCACCATAATGGCCTCCG 60.819 60.000 3.32 0.00 44.33 4.63
507 511 1.495878 GCATCGAGCGTCAATGAGAT 58.504 50.000 0.00 0.00 0.00 2.75
525 530 4.529769 TGAGATCAATCCTTCGATAGGCAT 59.470 41.667 8.32 0.00 44.37 4.40
536 541 1.202687 CGATAGGCATCACCACACCAT 60.203 52.381 0.00 0.00 43.14 3.55
546 551 2.905736 TCACCACACCATCATCTTCAGA 59.094 45.455 0.00 0.00 0.00 3.27
556 561 3.319137 TCATCTTCAGAAGAACCACCG 57.681 47.619 17.00 2.57 41.63 4.94
557 562 2.632996 TCATCTTCAGAAGAACCACCGT 59.367 45.455 17.00 0.00 41.63 4.83
566 571 4.430765 AACCACCGTCGCTAGCCG 62.431 66.667 9.66 7.82 38.61 5.52
613 619 2.034066 CACCCCTCACCGCATGTT 59.966 61.111 0.00 0.00 0.00 2.71
727 737 0.757188 ATCTCCTCTTCGTCCGCCAT 60.757 55.000 0.00 0.00 0.00 4.40
743 753 0.387202 CCATTTGGCAAACACCGTGA 59.613 50.000 16.00 0.00 0.00 4.35
747 757 1.380403 TTGGCAAACACCGTGACCAG 61.380 55.000 5.28 0.00 0.00 4.00
748 758 2.551912 GGCAAACACCGTGACCAGG 61.552 63.158 5.28 0.00 0.00 4.45
774 784 6.196168 GCGTCTCCTTTATTCTCTTTACGTAC 59.804 42.308 0.00 0.00 0.00 3.67
822 839 4.379243 AAGGAGGCCACGCAGTCG 62.379 66.667 5.01 0.00 41.61 4.18
920 937 5.382618 AGCAGAGTCCTTTATTGCAAAAG 57.617 39.130 1.71 3.26 37.24 2.27
1373 1390 2.043939 TCCTCTGGGCTACCTTCTAACA 59.956 50.000 0.00 0.00 37.76 2.41
1390 1407 1.748122 CAGCGCCTTTGATCTGGCT 60.748 57.895 2.29 5.52 46.42 4.75
1472 1492 0.394216 TTGGCAATCGAGTGGGGATG 60.394 55.000 15.48 0.00 0.00 3.51
1756 1791 2.645838 ACAGTTGCCTCACAAGATGT 57.354 45.000 0.00 0.00 39.50 3.06
1764 1799 7.538678 CAGTTGCCTCACAAGATGTTAATTTAC 59.461 37.037 0.00 0.00 39.50 2.01
1920 1959 5.010617 TCCCAACAGCAATAGGTTTTCTTTC 59.989 40.000 0.00 0.00 0.00 2.62
1998 2037 8.887717 GCATCTGAACTATCTTTCACTGTTTAT 58.112 33.333 0.00 0.00 32.02 1.40
2223 2262 2.743928 GGCCGAACTGGTCAGCAG 60.744 66.667 1.16 1.16 44.04 4.24
2249 2288 5.472137 ACACTGAAATATTTTGCTACGGTGT 59.528 36.000 18.66 18.66 40.13 4.16
2251 2290 6.523201 CACTGAAATATTTTGCTACGGTGTTC 59.477 38.462 13.71 0.00 0.00 3.18
2253 2292 5.708230 TGAAATATTTTGCTACGGTGTTCCT 59.292 36.000 1.43 0.00 0.00 3.36
2256 2295 1.873698 TTTGCTACGGTGTTCCTGTC 58.126 50.000 0.00 0.00 0.00 3.51
2257 2296 0.753867 TTGCTACGGTGTTCCTGTCA 59.246 50.000 0.00 0.00 0.00 3.58
2258 2297 0.973632 TGCTACGGTGTTCCTGTCAT 59.026 50.000 0.00 0.00 0.00 3.06
2259 2298 1.337728 TGCTACGGTGTTCCTGTCATG 60.338 52.381 0.00 0.00 0.00 3.07
2260 2299 1.359848 CTACGGTGTTCCTGTCATGC 58.640 55.000 0.00 0.00 0.00 4.06
2261 2300 0.973632 TACGGTGTTCCTGTCATGCT 59.026 50.000 0.00 0.00 0.00 3.79
2262 2301 0.603707 ACGGTGTTCCTGTCATGCTG 60.604 55.000 0.00 0.00 0.00 4.41
2263 2302 1.300971 CGGTGTTCCTGTCATGCTGG 61.301 60.000 6.69 6.69 37.52 4.85
2264 2303 0.962356 GGTGTTCCTGTCATGCTGGG 60.962 60.000 11.26 3.21 36.89 4.45
2265 2304 0.036732 GTGTTCCTGTCATGCTGGGA 59.963 55.000 11.26 5.17 36.89 4.37
2266 2305 0.994247 TGTTCCTGTCATGCTGGGAT 59.006 50.000 11.26 0.00 36.89 3.85
2267 2306 1.340308 TGTTCCTGTCATGCTGGGATG 60.340 52.381 11.26 0.00 36.89 3.51
2270 2309 1.100510 CCTGTCATGCTGGGATGTTG 58.899 55.000 2.31 0.00 33.11 3.33
2272 2311 0.251253 TGTCATGCTGGGATGTTGCA 60.251 50.000 2.31 0.00 41.13 4.08
2527 2569 7.014230 AGGTTTAAACTCTGCAAATTAGAAGCA 59.986 33.333 17.50 0.00 36.72 3.91
2588 2630 6.180472 ACAGTTCTCTTTGGAAGAAGAAACA 58.820 36.000 10.34 0.00 37.02 2.83
2595 2637 9.408648 TCTCTTTGGAAGAAGAAACAAGTAAAT 57.591 29.630 0.00 0.00 37.02 1.40
2749 3176 4.219507 TCAACTTGTTTTTGCTTCACCTCA 59.780 37.500 0.00 0.00 0.00 3.86
2778 3205 6.947644 AGCATCAGCATATGAACACAATTA 57.052 33.333 6.97 0.00 42.53 1.40
2957 3384 9.841295 TTACTACTGTGATTTTCTTACTTTGGT 57.159 29.630 0.00 0.00 0.00 3.67
2989 3418 6.018832 GTGTCATTTTTGTTTCCCATGTGAAG 60.019 38.462 0.00 0.00 0.00 3.02
2990 3419 6.127225 TGTCATTTTTGTTTCCCATGTGAAGA 60.127 34.615 0.00 0.00 0.00 2.87
3113 3564 9.546909 CATCTGTTATGTTCACTTGTGAAATAC 57.453 33.333 16.46 12.27 0.00 1.89
3114 3565 7.792925 TCTGTTATGTTCACTTGTGAAATACG 58.207 34.615 16.46 9.32 0.00 3.06
3115 3566 7.439955 TCTGTTATGTTCACTTGTGAAATACGT 59.560 33.333 16.46 9.97 0.00 3.57
3116 3567 8.590719 TGTTATGTTCACTTGTGAAATACGTA 57.409 30.769 16.46 9.13 0.00 3.57
3863 4319 6.979238 AGCGAAGTATGATACTAAACTGAACC 59.021 38.462 5.41 0.00 38.26 3.62
4122 4578 2.875933 ACACTTACATGTCCACGGTTTG 59.124 45.455 0.00 0.00 0.00 2.93
4207 4663 4.708177 TGCTCCCTTGTAGAATTAGCATC 58.292 43.478 0.00 0.00 33.84 3.91
4364 4821 7.383572 CCAGAGTCAAATTAGATACCGAGAATG 59.616 40.741 0.00 0.00 0.00 2.67
4581 5038 4.657408 TTCATGGCCGCCAGTGCA 62.657 61.111 18.96 4.33 36.75 4.57
4591 5048 1.661480 GCCAGTGCATTGCAAGTCA 59.339 52.632 13.94 2.02 41.47 3.41
4602 5059 4.675146 GCATTGCAAGTCATTTACATCCGT 60.675 41.667 4.94 0.00 0.00 4.69
4967 5424 0.544357 ATCACGTCTTGGTCCAGGGA 60.544 55.000 0.38 0.00 0.00 4.20
4998 5455 3.432608 GGGCTAATGGCTTGCAATGAAAT 60.433 43.478 0.00 0.00 41.46 2.17
5072 5532 5.278463 CCGAAAAGCTTGGTAATATCATGGG 60.278 44.000 0.00 0.00 0.00 4.00
5080 5540 5.560722 TGGTAATATCATGGGTGGTACTG 57.439 43.478 0.00 0.00 0.00 2.74
5088 5548 0.418245 TGGGTGGTACTGGGTATGGA 59.582 55.000 0.00 0.00 0.00 3.41
5095 5555 4.079958 GTGGTACTGGGTATGGAGGAAAAT 60.080 45.833 0.00 0.00 0.00 1.82
5100 5560 5.402630 ACTGGGTATGGAGGAAAATTTTGT 58.597 37.500 8.47 0.00 0.00 2.83
5131 5591 8.050778 ACTCTGTTTACAGTGTCAAAATTTCA 57.949 30.769 10.81 0.00 44.48 2.69
5160 5620 7.755373 GGTATTTATTGCTCCTCTTTTGTGAAC 59.245 37.037 0.00 0.00 0.00 3.18
5177 5638 3.122948 GTGAACGGTACACTACATGCAAG 59.877 47.826 0.00 0.00 35.66 4.01
5203 5664 3.825328 ACTTTGCAAGACAGAAGGACAT 58.175 40.909 0.00 0.00 0.00 3.06
5222 5683 5.006261 GGACATTGTTGTTTGTAAAACAGCC 59.994 40.000 14.48 7.22 37.57 4.85
5231 5692 1.746220 TGTAAAACAGCCAACACGCTT 59.254 42.857 0.00 0.00 36.82 4.68
5232 5693 2.223386 TGTAAAACAGCCAACACGCTTC 60.223 45.455 0.00 0.00 36.82 3.86
5233 5694 0.102300 AAAACAGCCAACACGCTTCC 59.898 50.000 0.00 0.00 36.82 3.46
5234 5695 0.751643 AAACAGCCAACACGCTTCCT 60.752 50.000 0.00 0.00 36.82 3.36
5235 5696 1.447317 AACAGCCAACACGCTTCCTG 61.447 55.000 0.00 0.00 36.82 3.86
5236 5697 2.281761 AGCCAACACGCTTCCTGG 60.282 61.111 0.00 0.00 34.73 4.45
5237 5698 2.594592 GCCAACACGCTTCCTGGT 60.595 61.111 0.00 0.00 0.00 4.00
5238 5699 2.193536 GCCAACACGCTTCCTGGTT 61.194 57.895 0.00 0.00 0.00 3.67
5239 5700 1.949257 CCAACACGCTTCCTGGTTC 59.051 57.895 0.00 0.00 0.00 3.62
5240 5701 1.515521 CCAACACGCTTCCTGGTTCC 61.516 60.000 0.00 0.00 0.00 3.62
5241 5702 0.535102 CAACACGCTTCCTGGTTCCT 60.535 55.000 0.00 0.00 0.00 3.36
5242 5703 1.053424 AACACGCTTCCTGGTTCCTA 58.947 50.000 0.00 0.00 0.00 2.94
5243 5704 0.320697 ACACGCTTCCTGGTTCCTAC 59.679 55.000 0.00 0.00 0.00 3.18
5244 5705 0.736325 CACGCTTCCTGGTTCCTACG 60.736 60.000 0.00 0.00 0.00 3.51
5245 5706 1.183676 ACGCTTCCTGGTTCCTACGT 61.184 55.000 0.00 0.00 0.00 3.57
5246 5707 0.037605 CGCTTCCTGGTTCCTACGTT 60.038 55.000 0.00 0.00 0.00 3.99
5247 5708 1.607251 CGCTTCCTGGTTCCTACGTTT 60.607 52.381 0.00 0.00 0.00 3.60
5248 5709 2.501261 GCTTCCTGGTTCCTACGTTTT 58.499 47.619 0.00 0.00 0.00 2.43
5249 5710 2.483106 GCTTCCTGGTTCCTACGTTTTC 59.517 50.000 0.00 0.00 0.00 2.29
5250 5711 3.735591 CTTCCTGGTTCCTACGTTTTCA 58.264 45.455 0.00 0.00 0.00 2.69
5251 5712 3.396260 TCCTGGTTCCTACGTTTTCAG 57.604 47.619 0.00 0.00 0.00 3.02
5252 5713 2.967201 TCCTGGTTCCTACGTTTTCAGA 59.033 45.455 0.00 0.00 0.00 3.27
5253 5714 3.581332 TCCTGGTTCCTACGTTTTCAGAT 59.419 43.478 0.00 0.00 0.00 2.90
5254 5715 4.041198 TCCTGGTTCCTACGTTTTCAGATT 59.959 41.667 0.00 0.00 0.00 2.40
5255 5716 4.392138 CCTGGTTCCTACGTTTTCAGATTC 59.608 45.833 0.00 0.00 0.00 2.52
5256 5717 4.320870 TGGTTCCTACGTTTTCAGATTCC 58.679 43.478 0.00 0.00 0.00 3.01
5257 5718 4.202377 TGGTTCCTACGTTTTCAGATTCCA 60.202 41.667 0.00 0.00 0.00 3.53
5258 5719 4.941873 GGTTCCTACGTTTTCAGATTCCAT 59.058 41.667 0.00 0.00 0.00 3.41
5259 5720 6.110707 GGTTCCTACGTTTTCAGATTCCATA 58.889 40.000 0.00 0.00 0.00 2.74
5260 5721 6.766467 GGTTCCTACGTTTTCAGATTCCATAT 59.234 38.462 0.00 0.00 0.00 1.78
5261 5722 7.254795 GGTTCCTACGTTTTCAGATTCCATATG 60.255 40.741 0.00 0.00 0.00 1.78
5262 5723 6.884832 TCCTACGTTTTCAGATTCCATATGT 58.115 36.000 0.00 0.00 0.00 2.29
5263 5724 7.335627 TCCTACGTTTTCAGATTCCATATGTT 58.664 34.615 0.00 0.00 0.00 2.71
5264 5725 7.827236 TCCTACGTTTTCAGATTCCATATGTTT 59.173 33.333 0.00 0.00 0.00 2.83
5265 5726 7.910162 CCTACGTTTTCAGATTCCATATGTTTG 59.090 37.037 0.00 0.00 0.00 2.93
5266 5727 7.214467 ACGTTTTCAGATTCCATATGTTTGT 57.786 32.000 1.24 0.00 0.00 2.83
5267 5728 8.330466 ACGTTTTCAGATTCCATATGTTTGTA 57.670 30.769 1.24 0.00 0.00 2.41
5268 5729 8.234546 ACGTTTTCAGATTCCATATGTTTGTAC 58.765 33.333 1.24 0.00 0.00 2.90
5269 5730 8.450964 CGTTTTCAGATTCCATATGTTTGTACT 58.549 33.333 1.24 0.00 0.00 2.73
5270 5731 9.559958 GTTTTCAGATTCCATATGTTTGTACTG 57.440 33.333 1.24 4.22 0.00 2.74
5271 5732 8.862325 TTTCAGATTCCATATGTTTGTACTGT 57.138 30.769 1.24 0.00 0.00 3.55
5272 5733 8.862325 TTCAGATTCCATATGTTTGTACTGTT 57.138 30.769 1.24 0.00 0.00 3.16
5273 5734 8.492673 TCAGATTCCATATGTTTGTACTGTTC 57.507 34.615 1.24 0.00 0.00 3.18
5274 5735 8.100164 TCAGATTCCATATGTTTGTACTGTTCA 58.900 33.333 1.24 0.00 0.00 3.18
5275 5736 8.896744 CAGATTCCATATGTTTGTACTGTTCAT 58.103 33.333 1.24 0.00 0.00 2.57
5276 5737 9.113838 AGATTCCATATGTTTGTACTGTTCATC 57.886 33.333 1.24 0.00 0.00 2.92
5277 5738 8.806429 ATTCCATATGTTTGTACTGTTCATCA 57.194 30.769 1.24 0.00 0.00 3.07
5278 5739 8.628630 TTCCATATGTTTGTACTGTTCATCAA 57.371 30.769 1.24 0.00 0.00 2.57
5279 5740 8.628630 TCCATATGTTTGTACTGTTCATCAAA 57.371 30.769 1.24 0.00 0.00 2.69
5280 5741 8.511321 TCCATATGTTTGTACTGTTCATCAAAC 58.489 33.333 16.06 16.06 45.26 2.93
5281 5742 7.754924 CCATATGTTTGTACTGTTCATCAAACC 59.245 37.037 18.15 8.72 44.78 3.27
5282 5743 6.959639 ATGTTTGTACTGTTCATCAAACCT 57.040 33.333 18.15 11.47 44.78 3.50
5283 5744 6.767524 TGTTTGTACTGTTCATCAAACCTT 57.232 33.333 18.15 0.00 44.78 3.50
5284 5745 6.559810 TGTTTGTACTGTTCATCAAACCTTG 58.440 36.000 18.15 0.00 44.78 3.61
5285 5746 6.151985 TGTTTGTACTGTTCATCAAACCTTGT 59.848 34.615 18.15 0.00 44.78 3.16
5286 5747 6.767524 TTGTACTGTTCATCAAACCTTGTT 57.232 33.333 0.00 0.00 37.03 2.83
5287 5748 6.371809 TGTACTGTTCATCAAACCTTGTTC 57.628 37.500 0.00 0.00 37.03 3.18
5288 5749 4.918810 ACTGTTCATCAAACCTTGTTCC 57.081 40.909 0.00 0.00 37.03 3.62
5289 5750 4.536765 ACTGTTCATCAAACCTTGTTCCT 58.463 39.130 0.00 0.00 37.03 3.36
5290 5751 4.339247 ACTGTTCATCAAACCTTGTTCCTG 59.661 41.667 0.00 0.00 37.03 3.86
5291 5752 4.277476 TGTTCATCAAACCTTGTTCCTGT 58.723 39.130 0.00 0.00 37.03 4.00
5292 5753 4.097741 TGTTCATCAAACCTTGTTCCTGTG 59.902 41.667 0.00 0.00 37.03 3.66
5293 5754 4.163441 TCATCAAACCTTGTTCCTGTGA 57.837 40.909 0.00 0.00 0.00 3.58
5294 5755 3.882888 TCATCAAACCTTGTTCCTGTGAC 59.117 43.478 0.00 0.00 0.00 3.67
5295 5756 2.285083 TCAAACCTTGTTCCTGTGACG 58.715 47.619 0.00 0.00 0.00 4.35
5296 5757 2.014128 CAAACCTTGTTCCTGTGACGT 58.986 47.619 0.00 0.00 0.00 4.34
5297 5758 1.949465 AACCTTGTTCCTGTGACGTC 58.051 50.000 9.11 9.11 0.00 4.34
5298 5759 0.249322 ACCTTGTTCCTGTGACGTCG 60.249 55.000 11.62 0.00 0.00 5.12
5299 5760 0.249322 CCTTGTTCCTGTGACGTCGT 60.249 55.000 11.62 0.00 0.00 4.34
5300 5761 1.567504 CTTGTTCCTGTGACGTCGTT 58.432 50.000 11.62 0.00 0.00 3.85
5301 5762 1.931172 CTTGTTCCTGTGACGTCGTTT 59.069 47.619 11.62 0.00 0.00 3.60
5302 5763 2.012937 TGTTCCTGTGACGTCGTTTT 57.987 45.000 11.62 0.00 0.00 2.43
5303 5764 2.348660 TGTTCCTGTGACGTCGTTTTT 58.651 42.857 11.62 0.00 0.00 1.94
5323 5784 6.373186 TTTTTCCTTCGTTTTCTCTTCCTC 57.627 37.500 0.00 0.00 0.00 3.71
5324 5785 3.679824 TCCTTCGTTTTCTCTTCCTCC 57.320 47.619 0.00 0.00 0.00 4.30
5325 5786 2.969950 TCCTTCGTTTTCTCTTCCTCCA 59.030 45.455 0.00 0.00 0.00 3.86
5326 5787 3.583086 TCCTTCGTTTTCTCTTCCTCCAT 59.417 43.478 0.00 0.00 0.00 3.41
5327 5788 4.775780 TCCTTCGTTTTCTCTTCCTCCATA 59.224 41.667 0.00 0.00 0.00 2.74
5328 5789 4.870991 CCTTCGTTTTCTCTTCCTCCATAC 59.129 45.833 0.00 0.00 0.00 2.39
5329 5790 4.467198 TCGTTTTCTCTTCCTCCATACC 57.533 45.455 0.00 0.00 0.00 2.73
5330 5791 3.119245 TCGTTTTCTCTTCCTCCATACCG 60.119 47.826 0.00 0.00 0.00 4.02
5331 5792 3.119245 CGTTTTCTCTTCCTCCATACCGA 60.119 47.826 0.00 0.00 0.00 4.69
5332 5793 4.619863 CGTTTTCTCTTCCTCCATACCGAA 60.620 45.833 0.00 0.00 0.00 4.30
5333 5794 4.467198 TTTCTCTTCCTCCATACCGAAC 57.533 45.455 0.00 0.00 0.00 3.95
5334 5795 2.022195 TCTCTTCCTCCATACCGAACG 58.978 52.381 0.00 0.00 0.00 3.95
5335 5796 1.067212 CTCTTCCTCCATACCGAACGG 59.933 57.143 11.83 11.83 42.03 4.44
5336 5797 1.108776 CTTCCTCCATACCGAACGGA 58.891 55.000 20.14 4.23 38.96 4.69
5337 5798 1.067212 CTTCCTCCATACCGAACGGAG 59.933 57.143 20.14 6.13 45.02 4.63
5338 5799 1.067582 CCTCCATACCGAACGGAGC 59.932 63.158 20.14 0.00 44.24 4.70
5392 5853 7.629130 CAAGTATTGTGAACCCATTTGTTTTG 58.371 34.615 0.00 0.00 42.34 2.44
5393 5854 6.883744 AGTATTGTGAACCCATTTGTTTTGT 58.116 32.000 0.00 0.00 0.00 2.83
5394 5855 8.012957 AGTATTGTGAACCCATTTGTTTTGTA 57.987 30.769 0.00 0.00 0.00 2.41
5395 5856 7.923878 AGTATTGTGAACCCATTTGTTTTGTAC 59.076 33.333 0.00 0.00 0.00 2.90
5396 5857 5.923733 TGTGAACCCATTTGTTTTGTACT 57.076 34.783 0.00 0.00 0.00 2.73
5397 5858 5.897050 TGTGAACCCATTTGTTTTGTACTC 58.103 37.500 0.00 0.00 0.00 2.59
5398 5859 5.163499 TGTGAACCCATTTGTTTTGTACTCC 60.163 40.000 0.00 0.00 0.00 3.85
5399 5860 4.342665 TGAACCCATTTGTTTTGTACTCCC 59.657 41.667 0.00 0.00 0.00 4.30
5400 5861 4.193240 ACCCATTTGTTTTGTACTCCCT 57.807 40.909 0.00 0.00 0.00 4.20
5401 5862 4.149598 ACCCATTTGTTTTGTACTCCCTC 58.850 43.478 0.00 0.00 0.00 4.30
5402 5863 3.509967 CCCATTTGTTTTGTACTCCCTCC 59.490 47.826 0.00 0.00 0.00 4.30
5403 5864 3.190535 CCATTTGTTTTGTACTCCCTCCG 59.809 47.826 0.00 0.00 0.00 4.63
5404 5865 3.564053 TTTGTTTTGTACTCCCTCCGT 57.436 42.857 0.00 0.00 0.00 4.69
5405 5866 3.564053 TTGTTTTGTACTCCCTCCGTT 57.436 42.857 0.00 0.00 0.00 4.44
5406 5867 3.564053 TGTTTTGTACTCCCTCCGTTT 57.436 42.857 0.00 0.00 0.00 3.60
5407 5868 3.469739 TGTTTTGTACTCCCTCCGTTTC 58.530 45.455 0.00 0.00 0.00 2.78
5408 5869 3.135167 TGTTTTGTACTCCCTCCGTTTCT 59.865 43.478 0.00 0.00 0.00 2.52
5409 5870 4.132336 GTTTTGTACTCCCTCCGTTTCTT 58.868 43.478 0.00 0.00 0.00 2.52
5410 5871 4.426736 TTTGTACTCCCTCCGTTTCTTT 57.573 40.909 0.00 0.00 0.00 2.52
5411 5872 4.426736 TTGTACTCCCTCCGTTTCTTTT 57.573 40.909 0.00 0.00 0.00 2.27
5412 5873 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
5413 5874 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
5414 5875 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
5415 5876 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
5416 5877 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
5417 5878 5.443283 ACTCCCTCCGTTTCTTTTTAGTTT 58.557 37.500 0.00 0.00 0.00 2.66
5418 5879 5.298527 ACTCCCTCCGTTTCTTTTTAGTTTG 59.701 40.000 0.00 0.00 0.00 2.93
5419 5880 4.037089 TCCCTCCGTTTCTTTTTAGTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
5420 5881 4.202070 CCCTCCGTTTCTTTTTAGTTTGCA 60.202 41.667 0.00 0.00 0.00 4.08
5421 5882 5.508994 CCCTCCGTTTCTTTTTAGTTTGCAT 60.509 40.000 0.00 0.00 0.00 3.96
5422 5883 6.294286 CCCTCCGTTTCTTTTTAGTTTGCATA 60.294 38.462 0.00 0.00 0.00 3.14
5423 5884 7.312899 CCTCCGTTTCTTTTTAGTTTGCATAT 58.687 34.615 0.00 0.00 0.00 1.78
5424 5885 8.455682 CCTCCGTTTCTTTTTAGTTTGCATATA 58.544 33.333 0.00 0.00 0.00 0.86
5425 5886 9.834628 CTCCGTTTCTTTTTAGTTTGCATATAA 57.165 29.630 0.00 0.00 0.00 0.98
5426 5887 9.834628 TCCGTTTCTTTTTAGTTTGCATATAAG 57.165 29.630 0.00 0.00 0.00 1.73
5427 5888 9.834628 CCGTTTCTTTTTAGTTTGCATATAAGA 57.165 29.630 0.00 0.00 0.00 2.10
5435 5896 9.781834 TTTTAGTTTGCATATAAGATTTGGTCG 57.218 29.630 0.00 0.00 0.00 4.79
5436 5897 8.725405 TTAGTTTGCATATAAGATTTGGTCGA 57.275 30.769 0.00 0.00 0.00 4.20
5437 5898 7.624360 AGTTTGCATATAAGATTTGGTCGAA 57.376 32.000 0.00 0.00 0.00 3.71
5438 5899 7.697691 AGTTTGCATATAAGATTTGGTCGAAG 58.302 34.615 0.00 0.00 0.00 3.79
5439 5900 7.336931 AGTTTGCATATAAGATTTGGTCGAAGT 59.663 33.333 0.00 0.00 0.00 3.01
5440 5901 6.844696 TGCATATAAGATTTGGTCGAAGTC 57.155 37.500 0.00 0.00 0.00 3.01
5441 5902 6.345298 TGCATATAAGATTTGGTCGAAGTCA 58.655 36.000 0.00 0.00 0.00 3.41
5442 5903 6.821160 TGCATATAAGATTTGGTCGAAGTCAA 59.179 34.615 0.00 0.00 0.00 3.18
5443 5904 7.335673 TGCATATAAGATTTGGTCGAAGTCAAA 59.664 33.333 10.75 10.75 36.61 2.69
5444 5905 7.640240 GCATATAAGATTTGGTCGAAGTCAAAC 59.360 37.037 10.62 6.73 35.59 2.93
5445 5906 8.883731 CATATAAGATTTGGTCGAAGTCAAACT 58.116 33.333 10.62 8.26 35.59 2.66
5446 5907 7.745620 ATAAGATTTGGTCGAAGTCAAACTT 57.254 32.000 10.62 14.89 41.95 2.66
5447 5908 6.451064 AAGATTTGGTCGAAGTCAAACTTT 57.549 33.333 10.62 6.91 38.80 2.66
5448 5909 5.821204 AGATTTGGTCGAAGTCAAACTTTG 58.179 37.500 10.62 1.34 38.80 2.77
5449 5910 5.357032 AGATTTGGTCGAAGTCAAACTTTGT 59.643 36.000 10.62 0.00 38.80 2.83
5450 5911 6.540914 AGATTTGGTCGAAGTCAAACTTTGTA 59.459 34.615 10.62 0.00 38.80 2.41
5451 5912 6.497785 TTTGGTCGAAGTCAAACTTTGTAA 57.502 33.333 6.90 0.77 38.80 2.41
5452 5913 6.497785 TTGGTCGAAGTCAAACTTTGTAAA 57.502 33.333 6.90 0.00 38.80 2.01
5453 5914 6.114221 TGGTCGAAGTCAAACTTTGTAAAG 57.886 37.500 6.90 2.94 38.80 1.85
5502 5963 9.982651 AATATCAACATCTACAATACTAACGCT 57.017 29.630 0.00 0.00 0.00 5.07
5544 6005 9.590451 AATTTCATGATGCACCTAAAAGTATTG 57.410 29.630 0.00 0.00 0.00 1.90
5545 6006 7.936496 TTCATGATGCACCTAAAAGTATTGA 57.064 32.000 0.00 0.00 0.00 2.57
5546 6007 8.523915 TTCATGATGCACCTAAAAGTATTGAT 57.476 30.769 0.00 0.00 0.00 2.57
5547 6008 8.523915 TCATGATGCACCTAAAAGTATTGATT 57.476 30.769 0.00 0.00 0.00 2.57
5548 6009 8.623903 TCATGATGCACCTAAAAGTATTGATTC 58.376 33.333 0.00 0.00 0.00 2.52
5549 6010 8.627403 CATGATGCACCTAAAAGTATTGATTCT 58.373 33.333 0.00 0.00 0.00 2.40
5550 6011 9.851686 ATGATGCACCTAAAAGTATTGATTCTA 57.148 29.630 0.00 0.00 0.00 2.10
5551 6012 9.851686 TGATGCACCTAAAAGTATTGATTCTAT 57.148 29.630 0.00 0.00 0.00 1.98
5615 6076 9.984190 AAAGTTAACAAAGTTTGACTTTAACCA 57.016 25.926 22.63 0.15 45.84 3.67
5616 6077 9.984190 AAGTTAACAAAGTTTGACTTTAACCAA 57.016 25.926 22.23 0.00 45.84 3.67
5617 6078 9.984190 AGTTAACAAAGTTTGACTTTAACCAAA 57.016 25.926 22.23 0.00 45.84 3.28
5621 6082 9.719355 AACAAAGTTTGACTTTAACCAAATCTT 57.281 25.926 22.23 0.00 45.84 2.40
5679 6140 6.998968 AAGGAGAAATGAAGTAATCTGCTG 57.001 37.500 0.00 0.00 39.31 4.41
5712 6173 1.884235 AACGCCAGAAAGACCAAGAG 58.116 50.000 0.00 0.00 0.00 2.85
5778 6261 3.063997 GGTGTAGCAAGCACATACATGTC 59.936 47.826 0.00 0.00 39.39 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.599621 TGCATCATTTGAACAAAACTAATCTGG 59.400 33.333 4.12 0.00 33.56 3.86
1 2 8.523523 TGCATCATTTGAACAAAACTAATCTG 57.476 30.769 4.12 0.00 33.56 2.90
2 3 9.545105 TTTGCATCATTTGAACAAAACTAATCT 57.455 25.926 4.12 0.00 33.86 2.40
5 6 9.932699 CAATTTGCATCATTTGAACAAAACTAA 57.067 25.926 12.99 0.00 37.55 2.24
6 7 9.322773 TCAATTTGCATCATTTGAACAAAACTA 57.677 25.926 12.99 0.00 37.55 2.24
7 8 8.211116 TCAATTTGCATCATTTGAACAAAACT 57.789 26.923 12.99 4.87 37.55 2.66
8 9 8.838452 TTCAATTTGCATCATTTGAACAAAAC 57.162 26.923 12.99 0.00 37.55 2.43
9 10 9.504710 CTTTCAATTTGCATCATTTGAACAAAA 57.495 25.926 12.99 3.18 37.69 2.44
10 11 8.129840 CCTTTCAATTTGCATCATTTGAACAAA 58.870 29.630 11.94 11.94 37.69 2.83
29 30 9.912634 CACTTCTGCTATTATTTTTCCTTTCAA 57.087 29.630 0.00 0.00 0.00 2.69
42 43 9.772973 TCTACTTTTCAAACACTTCTGCTATTA 57.227 29.630 0.00 0.00 0.00 0.98
47 48 8.507249 ACATATCTACTTTTCAAACACTTCTGC 58.493 33.333 0.00 0.00 0.00 4.26
71 72 4.502962 TGTCGCATGATATGTCTCAAACA 58.497 39.130 0.00 0.00 43.51 2.83
81 82 4.568359 GTGAGTGTTTCTGTCGCATGATAT 59.432 41.667 0.00 0.00 0.00 1.63
90 91 6.844696 TGTCTAAATGTGAGTGTTTCTGTC 57.155 37.500 0.00 0.00 0.00 3.51
91 92 6.767902 ACATGTCTAAATGTGAGTGTTTCTGT 59.232 34.615 0.00 0.00 39.32 3.41
115 116 1.201880 AGTTTACGAAGAGCGGGAGAC 59.798 52.381 0.00 0.00 46.49 3.36
154 155 2.169769 TGGTTGAAACTCTCGTGGAAGT 59.830 45.455 0.00 0.00 0.00 3.01
167 168 1.076412 TGCACAGGGCTGGTTGAAA 60.076 52.632 0.00 0.00 45.15 2.69
203 204 2.094675 CCTTCCACGATGCCAGAAAAT 58.905 47.619 0.00 0.00 0.00 1.82
211 212 0.539986 TAGTTCCCCTTCCACGATGC 59.460 55.000 0.00 0.00 0.00 3.91
218 219 4.108501 TGTTTCCTTTAGTTCCCCTTCC 57.891 45.455 0.00 0.00 0.00 3.46
235 236 2.556114 CCTCTTCCTTCCAGCCATGTTT 60.556 50.000 0.00 0.00 0.00 2.83
240 241 1.839994 CATACCTCTTCCTTCCAGCCA 59.160 52.381 0.00 0.00 0.00 4.75
243 244 2.101582 CGACCATACCTCTTCCTTCCAG 59.898 54.545 0.00 0.00 0.00 3.86
253 254 3.318275 TGACTGAATAGCGACCATACCTC 59.682 47.826 0.00 0.00 0.00 3.85
266 267 5.592054 GTCGGTGAATCTGATGACTGAATA 58.408 41.667 11.29 0.00 33.66 1.75
273 274 0.459899 CCCGTCGGTGAATCTGATGA 59.540 55.000 11.06 0.00 39.99 2.92
290 291 0.629058 TGGCCTACCTTTTCATCCCC 59.371 55.000 3.32 0.00 36.63 4.81
314 315 2.706834 ATGGACATCGTGGACGCGA 61.707 57.895 15.93 10.54 45.32 5.87
323 324 1.066215 TGTGTTCCTCCATGGACATCG 60.066 52.381 11.44 0.24 46.14 3.84
369 370 2.617308 GAGCTCATCATCACCACCATTG 59.383 50.000 9.40 0.00 0.00 2.82
370 371 2.744166 CGAGCTCATCATCACCACCATT 60.744 50.000 15.40 0.00 0.00 3.16
371 372 1.202615 CGAGCTCATCATCACCACCAT 60.203 52.381 15.40 0.00 0.00 3.55
372 373 0.176449 CGAGCTCATCATCACCACCA 59.824 55.000 15.40 0.00 0.00 4.17
373 374 0.461548 TCGAGCTCATCATCACCACC 59.538 55.000 15.40 0.00 0.00 4.61
374 375 2.522836 ATCGAGCTCATCATCACCAC 57.477 50.000 15.40 0.00 0.00 4.16
375 376 2.431782 TGAATCGAGCTCATCATCACCA 59.568 45.455 15.40 0.00 0.00 4.17
408 409 4.450419 GTGGTGAGTGAGAAAGAATCTGTG 59.550 45.833 0.00 0.00 38.96 3.66
415 416 2.890945 TCATCGTGGTGAGTGAGAAAGA 59.109 45.455 0.00 0.00 0.00 2.52
419 420 1.067565 GCTTCATCGTGGTGAGTGAGA 60.068 52.381 0.00 0.00 0.00 3.27
459 460 2.010582 ATCTCCTTCCTCGCTGCGTC 62.011 60.000 22.48 0.00 0.00 5.19
486 490 1.001624 CTCATTGACGCTCGATGCAA 58.998 50.000 0.00 0.00 43.06 4.08
491 495 2.939460 TTGATCTCATTGACGCTCGA 57.061 45.000 0.00 0.00 0.00 4.04
525 530 2.905736 TCTGAAGATGATGGTGTGGTGA 59.094 45.455 0.00 0.00 0.00 4.02
536 541 2.632996 ACGGTGGTTCTTCTGAAGATGA 59.367 45.455 19.93 4.39 37.38 2.92
546 551 1.080025 GCTAGCGACGGTGGTTCTT 60.080 57.895 10.33 0.00 0.00 2.52
593 598 4.722700 ATGCGGTGAGGGGTGTGC 62.723 66.667 0.00 0.00 0.00 4.57
600 605 3.803082 CGGCAACATGCGGTGAGG 61.803 66.667 0.00 0.00 46.21 3.86
695 704 2.592308 GAGATGGGGGAGGTGCAC 59.408 66.667 8.80 8.80 0.00 4.57
696 705 2.692368 GGAGATGGGGGAGGTGCA 60.692 66.667 0.00 0.00 0.00 4.57
697 706 2.367512 AGGAGATGGGGGAGGTGC 60.368 66.667 0.00 0.00 0.00 5.01
698 707 0.327000 AAGAGGAGATGGGGGAGGTG 60.327 60.000 0.00 0.00 0.00 4.00
699 708 0.030603 GAAGAGGAGATGGGGGAGGT 60.031 60.000 0.00 0.00 0.00 3.85
700 709 1.118356 CGAAGAGGAGATGGGGGAGG 61.118 65.000 0.00 0.00 0.00 4.30
701 710 0.397816 ACGAAGAGGAGATGGGGGAG 60.398 60.000 0.00 0.00 0.00 4.30
702 711 0.397254 GACGAAGAGGAGATGGGGGA 60.397 60.000 0.00 0.00 0.00 4.81
703 712 1.403687 GGACGAAGAGGAGATGGGGG 61.404 65.000 0.00 0.00 0.00 5.40
727 737 0.965866 TGGTCACGGTGTTTGCCAAA 60.966 50.000 8.17 0.00 0.00 3.28
738 748 4.436998 GAGACGCCCTGGTCACGG 62.437 72.222 6.08 0.00 39.42 4.94
739 749 4.436998 GGAGACGCCCTGGTCACG 62.437 72.222 0.00 0.00 39.42 4.35
743 753 1.209747 GAATAAAGGAGACGCCCTGGT 59.790 52.381 0.00 0.00 36.49 4.00
747 757 3.545366 AAGAGAATAAAGGAGACGCCC 57.455 47.619 0.00 0.00 37.37 6.13
748 758 4.503370 CGTAAAGAGAATAAAGGAGACGCC 59.497 45.833 0.00 0.00 0.00 5.68
822 839 3.414700 CGAGTGGCTGCGTTGTCC 61.415 66.667 0.00 0.00 0.00 4.02
947 964 3.257561 CACGAGGGCGAGATTGCG 61.258 66.667 0.00 0.00 41.64 4.85
1390 1407 5.010719 CCAGCTAAATCCAGACCTTCGTATA 59.989 44.000 0.00 0.00 0.00 1.47
1756 1791 4.354893 AGACCACCCACACGTAAATTAA 57.645 40.909 0.00 0.00 0.00 1.40
1764 1799 5.462530 TCATATAATAGACCACCCACACG 57.537 43.478 0.00 0.00 0.00 4.49
1867 1903 5.948162 ACGGTAGGTTCATTGACTTCTACTA 59.052 40.000 14.51 0.00 0.00 1.82
1920 1959 6.656693 ACTGATCCTTTAACTGTGATTCAAGG 59.343 38.462 0.00 0.00 35.21 3.61
2223 2262 6.523201 CACCGTAGCAAAATATTTCAGTGTTC 59.477 38.462 0.10 0.00 0.00 3.18
2249 2288 0.994247 ACATCCCAGCATGACAGGAA 59.006 50.000 0.00 0.00 39.69 3.36
2251 2290 1.100510 CAACATCCCAGCATGACAGG 58.899 55.000 0.00 0.00 39.69 4.00
2253 2292 0.251253 TGCAACATCCCAGCATGACA 60.251 50.000 0.00 0.00 39.69 3.58
2256 2295 2.343101 CTTTTGCAACATCCCAGCATG 58.657 47.619 0.00 0.00 38.19 4.06
2257 2296 1.338389 GCTTTTGCAACATCCCAGCAT 60.338 47.619 0.00 0.00 46.58 3.79
2258 2297 0.033781 GCTTTTGCAACATCCCAGCA 59.966 50.000 0.00 0.00 46.58 4.41
2259 2298 2.831597 GCTTTTGCAACATCCCAGC 58.168 52.632 0.00 0.00 46.58 4.85
2270 2309 4.660352 TCAACTGTTTTGTTGCTTTTGC 57.340 36.364 0.00 0.00 44.83 3.68
2272 2311 5.118510 CGAGTTCAACTGTTTTGTTGCTTTT 59.881 36.000 0.00 0.00 44.83 2.27
2527 2569 7.336679 TCACTGCTAATAGTAATGCACAAACAT 59.663 33.333 0.00 0.00 0.00 2.71
2596 2638 4.216687 ACACGTCTGAGTTCCAAACAAAAA 59.783 37.500 0.00 0.00 0.00 1.94
2749 3176 7.219322 TGTGTTCATATGCTGATGCTAGTATT 58.781 34.615 0.00 0.00 40.48 1.89
2778 3205 7.291182 ACCATCTAATATAGCTGGAGTGAAGTT 59.709 37.037 12.79 0.00 43.13 2.66
2957 3384 5.363939 GGAAACAAAAATGACACATCCCAA 58.636 37.500 0.00 0.00 0.00 4.12
3031 3460 7.979786 AGAAAAGAGGAGTGGATAAGTCATA 57.020 36.000 0.00 0.00 0.00 2.15
3032 3461 6.882768 AGAAAAGAGGAGTGGATAAGTCAT 57.117 37.500 0.00 0.00 0.00 3.06
3033 3462 6.270000 TGAAGAAAAGAGGAGTGGATAAGTCA 59.730 38.462 0.00 0.00 0.00 3.41
3034 3463 6.702329 TGAAGAAAAGAGGAGTGGATAAGTC 58.298 40.000 0.00 0.00 0.00 3.01
3035 3464 6.688073 TGAAGAAAAGAGGAGTGGATAAGT 57.312 37.500 0.00 0.00 0.00 2.24
3036 3465 8.572855 AAATGAAGAAAAGAGGAGTGGATAAG 57.427 34.615 0.00 0.00 0.00 1.73
3037 3466 9.672673 CTAAATGAAGAAAAGAGGAGTGGATAA 57.327 33.333 0.00 0.00 0.00 1.75
3113 3564 4.614555 TGCAGGCTTACAATTCAATACG 57.385 40.909 0.00 0.00 0.00 3.06
3114 3565 7.832503 AAAATGCAGGCTTACAATTCAATAC 57.167 32.000 0.00 0.00 0.00 1.89
3115 3566 9.531942 CATAAAATGCAGGCTTACAATTCAATA 57.468 29.630 0.00 0.00 0.00 1.90
3116 3567 8.428186 CATAAAATGCAGGCTTACAATTCAAT 57.572 30.769 0.00 0.00 0.00 2.57
3427 3878 3.149196 GCTGAAAATCTCAAGGGACACA 58.851 45.455 0.00 0.00 32.17 3.72
3428 3879 3.149196 TGCTGAAAATCTCAAGGGACAC 58.851 45.455 0.00 0.00 32.17 3.67
3468 3919 6.656632 TGTTGCTCAATACACCCAATTTTA 57.343 33.333 0.00 0.00 0.00 1.52
3476 3928 5.376854 AACTGATTGTTGCTCAATACACC 57.623 39.130 7.46 0.00 45.49 4.16
3510 3962 3.444703 ACTAGCAAGCCTAAGATCACG 57.555 47.619 0.00 0.00 0.00 4.35
3741 4196 4.381932 CCATACAAGAAGGCCAAAATCACC 60.382 45.833 5.01 0.00 0.00 4.02
3863 4319 1.354337 CCGACGTCATGCCTCTTGTG 61.354 60.000 17.16 0.00 0.00 3.33
3904 4360 1.140852 TCATTAGTTCATCCCTGCCCG 59.859 52.381 0.00 0.00 0.00 6.13
3942 4398 4.317530 TCTTTAGGAGTCTACTGCCTCA 57.682 45.455 0.00 0.00 34.60 3.86
4064 4520 3.007506 TGCATTTCCTTCAGTAGTTCGGA 59.992 43.478 0.00 0.00 0.00 4.55
4122 4578 1.376812 CACCGCCTCCCCACTTAAC 60.377 63.158 0.00 0.00 0.00 2.01
4207 4663 5.242838 TGCTATGGTGTGGGTAAAAGAAAAG 59.757 40.000 0.00 0.00 0.00 2.27
4581 5038 4.201812 CGACGGATGTAAATGACTTGCAAT 60.202 41.667 0.00 0.00 32.98 3.56
4591 5048 2.277084 GAACAGGCGACGGATGTAAAT 58.723 47.619 0.00 0.00 0.00 1.40
4602 5059 2.285756 CACGTTTTTACTGAACAGGCGA 59.714 45.455 6.76 0.00 0.00 5.54
4967 5424 0.106015 GCCATTAGCCCATTCCCTGT 60.106 55.000 0.00 0.00 34.35 4.00
4998 5455 2.630098 AGGCTTAGCTAGATCATCGCAA 59.370 45.455 3.59 0.00 0.00 4.85
5014 5471 1.217057 ATCACACCCCCATGAGGCTT 61.217 55.000 0.00 0.00 0.00 4.35
5072 5532 2.170012 TCCTCCATACCCAGTACCAC 57.830 55.000 0.00 0.00 0.00 4.16
5080 5540 6.109156 ACAACAAAATTTTCCTCCATACCC 57.891 37.500 0.00 0.00 0.00 3.69
5088 5548 9.719355 AAACAGAGTTTACAACAAAATTTTCCT 57.281 25.926 0.00 0.00 0.00 3.36
5095 5555 8.569641 ACACTGTAAACAGAGTTTACAACAAAA 58.430 29.630 26.12 10.61 43.51 2.44
5100 5560 7.908827 TTGACACTGTAAACAGAGTTTACAA 57.091 32.000 26.12 14.60 45.42 2.41
5131 5591 6.897413 ACAAAAGAGGAGCAATAAATACCCAT 59.103 34.615 0.00 0.00 0.00 4.00
5160 5620 2.954316 TCACTTGCATGTAGTGTACCG 58.046 47.619 21.62 0.00 42.77 4.02
5177 5638 4.096382 TCCTTCTGTCTTGCAAAGTTTCAC 59.904 41.667 0.00 0.00 46.34 3.18
5196 5657 6.312672 GCTGTTTTACAAACAACAATGTCCTT 59.687 34.615 3.77 0.00 39.40 3.36
5203 5664 5.177696 GTGTTGGCTGTTTTACAAACAACAA 59.822 36.000 20.63 13.56 46.47 2.83
5222 5683 0.535102 AGGAACCAGGAAGCGTGTTG 60.535 55.000 0.00 0.00 0.00 3.33
5231 5692 2.967201 TCTGAAAACGTAGGAACCAGGA 59.033 45.455 0.00 0.00 0.00 3.86
5232 5693 3.396260 TCTGAAAACGTAGGAACCAGG 57.604 47.619 0.00 0.00 0.00 4.45
5233 5694 4.392138 GGAATCTGAAAACGTAGGAACCAG 59.608 45.833 0.00 0.00 0.00 4.00
5234 5695 4.202377 TGGAATCTGAAAACGTAGGAACCA 60.202 41.667 0.00 0.00 0.00 3.67
5235 5696 4.320870 TGGAATCTGAAAACGTAGGAACC 58.679 43.478 0.00 0.00 0.00 3.62
5236 5697 7.280205 ACATATGGAATCTGAAAACGTAGGAAC 59.720 37.037 7.80 0.00 0.00 3.62
5237 5698 7.335627 ACATATGGAATCTGAAAACGTAGGAA 58.664 34.615 7.80 0.00 0.00 3.36
5238 5699 6.884832 ACATATGGAATCTGAAAACGTAGGA 58.115 36.000 7.80 0.00 0.00 2.94
5239 5700 7.553881 AACATATGGAATCTGAAAACGTAGG 57.446 36.000 7.80 0.00 0.00 3.18
5240 5701 8.450964 ACAAACATATGGAATCTGAAAACGTAG 58.549 33.333 7.80 0.00 0.00 3.51
5241 5702 8.330466 ACAAACATATGGAATCTGAAAACGTA 57.670 30.769 7.80 0.00 0.00 3.57
5242 5703 7.214467 ACAAACATATGGAATCTGAAAACGT 57.786 32.000 7.80 0.00 0.00 3.99
5243 5704 8.450964 AGTACAAACATATGGAATCTGAAAACG 58.549 33.333 7.80 0.00 0.00 3.60
5244 5705 9.559958 CAGTACAAACATATGGAATCTGAAAAC 57.440 33.333 7.80 0.23 0.00 2.43
5245 5706 9.295825 ACAGTACAAACATATGGAATCTGAAAA 57.704 29.630 7.80 0.00 0.00 2.29
5246 5707 8.862325 ACAGTACAAACATATGGAATCTGAAA 57.138 30.769 7.80 0.00 0.00 2.69
5247 5708 8.862325 AACAGTACAAACATATGGAATCTGAA 57.138 30.769 7.80 0.00 0.00 3.02
5248 5709 8.100164 TGAACAGTACAAACATATGGAATCTGA 58.900 33.333 7.80 0.00 0.00 3.27
5249 5710 8.267620 TGAACAGTACAAACATATGGAATCTG 57.732 34.615 7.80 9.74 0.00 2.90
5250 5711 9.113838 GATGAACAGTACAAACATATGGAATCT 57.886 33.333 7.80 0.00 0.00 2.40
5251 5712 8.892723 TGATGAACAGTACAAACATATGGAATC 58.107 33.333 7.80 0.00 0.00 2.52
5252 5713 8.806429 TGATGAACAGTACAAACATATGGAAT 57.194 30.769 7.80 0.00 0.00 3.01
5253 5714 8.628630 TTGATGAACAGTACAAACATATGGAA 57.371 30.769 7.80 0.00 0.00 3.53
5254 5715 8.511321 GTTTGATGAACAGTACAAACATATGGA 58.489 33.333 7.80 0.00 46.04 3.41
5255 5716 8.673626 GTTTGATGAACAGTACAAACATATGG 57.326 34.615 7.80 0.00 46.04 2.74
5261 5722 6.560711 ACAAGGTTTGATGAACAGTACAAAC 58.439 36.000 0.00 0.00 46.04 2.93
5262 5723 6.767524 ACAAGGTTTGATGAACAGTACAAA 57.232 33.333 0.00 0.00 40.13 2.83
5263 5724 6.183360 GGAACAAGGTTTGATGAACAGTACAA 60.183 38.462 0.00 0.00 40.13 2.41
5264 5725 5.298276 GGAACAAGGTTTGATGAACAGTACA 59.702 40.000 0.00 0.00 40.13 2.90
5265 5726 5.531287 AGGAACAAGGTTTGATGAACAGTAC 59.469 40.000 0.00 0.00 40.13 2.73
5266 5727 5.530915 CAGGAACAAGGTTTGATGAACAGTA 59.469 40.000 0.00 0.00 40.13 2.74
5267 5728 4.339247 CAGGAACAAGGTTTGATGAACAGT 59.661 41.667 0.00 0.00 40.13 3.55
5268 5729 4.339247 ACAGGAACAAGGTTTGATGAACAG 59.661 41.667 0.00 0.00 40.13 3.16
5269 5730 4.097741 CACAGGAACAAGGTTTGATGAACA 59.902 41.667 0.00 0.00 40.13 3.18
5270 5731 4.338118 TCACAGGAACAAGGTTTGATGAAC 59.662 41.667 0.00 0.00 37.53 3.18
5271 5732 4.338118 GTCACAGGAACAAGGTTTGATGAA 59.662 41.667 0.00 0.00 0.00 2.57
5272 5733 3.882888 GTCACAGGAACAAGGTTTGATGA 59.117 43.478 0.00 0.00 0.00 2.92
5273 5734 3.303990 CGTCACAGGAACAAGGTTTGATG 60.304 47.826 0.00 0.00 0.00 3.07
5274 5735 2.878406 CGTCACAGGAACAAGGTTTGAT 59.122 45.455 0.00 0.00 0.00 2.57
5275 5736 2.285083 CGTCACAGGAACAAGGTTTGA 58.715 47.619 0.00 0.00 0.00 2.69
5276 5737 2.014128 ACGTCACAGGAACAAGGTTTG 58.986 47.619 0.00 0.00 0.00 2.93
5277 5738 2.285977 GACGTCACAGGAACAAGGTTT 58.714 47.619 11.55 0.00 0.00 3.27
5278 5739 1.805120 CGACGTCACAGGAACAAGGTT 60.805 52.381 17.16 0.00 0.00 3.50
5279 5740 0.249322 CGACGTCACAGGAACAAGGT 60.249 55.000 17.16 0.00 0.00 3.50
5280 5741 0.249322 ACGACGTCACAGGAACAAGG 60.249 55.000 17.16 0.00 0.00 3.61
5281 5742 1.567504 AACGACGTCACAGGAACAAG 58.432 50.000 17.16 0.00 0.00 3.16
5282 5743 2.012937 AAACGACGTCACAGGAACAA 57.987 45.000 17.16 0.00 0.00 2.83
5283 5744 2.012937 AAAACGACGTCACAGGAACA 57.987 45.000 17.16 0.00 0.00 3.18
5300 5761 5.298527 GGAGGAAGAGAAAACGAAGGAAAAA 59.701 40.000 0.00 0.00 0.00 1.94
5301 5762 4.820173 GGAGGAAGAGAAAACGAAGGAAAA 59.180 41.667 0.00 0.00 0.00 2.29
5302 5763 4.141574 TGGAGGAAGAGAAAACGAAGGAAA 60.142 41.667 0.00 0.00 0.00 3.13
5303 5764 3.389983 TGGAGGAAGAGAAAACGAAGGAA 59.610 43.478 0.00 0.00 0.00 3.36
5304 5765 2.969950 TGGAGGAAGAGAAAACGAAGGA 59.030 45.455 0.00 0.00 0.00 3.36
5305 5766 3.402628 TGGAGGAAGAGAAAACGAAGG 57.597 47.619 0.00 0.00 0.00 3.46
5306 5767 4.870991 GGTATGGAGGAAGAGAAAACGAAG 59.129 45.833 0.00 0.00 0.00 3.79
5307 5768 4.619863 CGGTATGGAGGAAGAGAAAACGAA 60.620 45.833 0.00 0.00 0.00 3.85
5308 5769 3.119245 CGGTATGGAGGAAGAGAAAACGA 60.119 47.826 0.00 0.00 0.00 3.85
5309 5770 3.119245 TCGGTATGGAGGAAGAGAAAACG 60.119 47.826 0.00 0.00 0.00 3.60
5310 5771 4.467198 TCGGTATGGAGGAAGAGAAAAC 57.533 45.455 0.00 0.00 0.00 2.43
5311 5772 4.619863 CGTTCGGTATGGAGGAAGAGAAAA 60.620 45.833 0.00 0.00 0.00 2.29
5312 5773 3.119245 CGTTCGGTATGGAGGAAGAGAAA 60.119 47.826 0.00 0.00 0.00 2.52
5313 5774 2.426024 CGTTCGGTATGGAGGAAGAGAA 59.574 50.000 0.00 0.00 0.00 2.87
5314 5775 2.022195 CGTTCGGTATGGAGGAAGAGA 58.978 52.381 0.00 0.00 0.00 3.10
5315 5776 1.067212 CCGTTCGGTATGGAGGAAGAG 59.933 57.143 2.82 0.00 34.56 2.85
5316 5777 1.108776 CCGTTCGGTATGGAGGAAGA 58.891 55.000 2.82 0.00 34.56 2.87
5317 5778 1.108776 TCCGTTCGGTATGGAGGAAG 58.891 55.000 11.04 0.00 37.00 3.46
5318 5779 3.286404 TCCGTTCGGTATGGAGGAA 57.714 52.632 11.04 0.00 37.00 3.36
5322 5783 0.106569 TAGGCTCCGTTCGGTATGGA 60.107 55.000 11.04 0.00 39.71 3.41
5323 5784 0.748450 TTAGGCTCCGTTCGGTATGG 59.252 55.000 11.04 2.44 0.00 2.74
5324 5785 2.814280 ATTAGGCTCCGTTCGGTATG 57.186 50.000 11.04 4.62 0.00 2.39
5325 5786 3.494332 ACTATTAGGCTCCGTTCGGTAT 58.506 45.455 11.04 0.00 0.00 2.73
5326 5787 2.936202 ACTATTAGGCTCCGTTCGGTA 58.064 47.619 11.04 0.00 0.00 4.02
5327 5788 1.772836 ACTATTAGGCTCCGTTCGGT 58.227 50.000 11.04 0.00 0.00 4.69
5328 5789 2.884894 AACTATTAGGCTCCGTTCGG 57.115 50.000 4.74 4.74 0.00 4.30
5329 5790 4.825546 TCTAACTATTAGGCTCCGTTCG 57.174 45.455 0.00 0.00 34.00 3.95
5330 5791 6.645827 GGATTTCTAACTATTAGGCTCCGTTC 59.354 42.308 0.00 0.00 34.00 3.95
5331 5792 6.099269 TGGATTTCTAACTATTAGGCTCCGTT 59.901 38.462 0.00 0.00 32.73 4.44
5332 5793 5.601313 TGGATTTCTAACTATTAGGCTCCGT 59.399 40.000 0.00 0.00 32.73 4.69
5333 5794 6.097915 TGGATTTCTAACTATTAGGCTCCG 57.902 41.667 0.00 0.00 32.73 4.63
5334 5795 8.157476 TCATTGGATTTCTAACTATTAGGCTCC 58.843 37.037 0.00 1.94 34.00 4.70
5335 5796 8.994170 GTCATTGGATTTCTAACTATTAGGCTC 58.006 37.037 0.00 0.00 34.00 4.70
5336 5797 8.494433 TGTCATTGGATTTCTAACTATTAGGCT 58.506 33.333 0.00 0.00 34.00 4.58
5337 5798 8.677148 TGTCATTGGATTTCTAACTATTAGGC 57.323 34.615 0.00 0.00 34.00 3.93
5338 5799 9.838339 ACTGTCATTGGATTTCTAACTATTAGG 57.162 33.333 0.00 0.00 34.00 2.69
5392 5853 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
5393 5854 5.813513 ACTAAAAAGAAACGGAGGGAGTA 57.186 39.130 0.00 0.00 0.00 2.59
5394 5855 4.701651 ACTAAAAAGAAACGGAGGGAGT 57.298 40.909 0.00 0.00 0.00 3.85
5395 5856 5.758924 CAAACTAAAAAGAAACGGAGGGAG 58.241 41.667 0.00 0.00 0.00 4.30
5396 5857 4.037089 GCAAACTAAAAAGAAACGGAGGGA 59.963 41.667 0.00 0.00 0.00 4.20
5397 5858 4.202070 TGCAAACTAAAAAGAAACGGAGGG 60.202 41.667 0.00 0.00 0.00 4.30
5398 5859 4.927422 TGCAAACTAAAAAGAAACGGAGG 58.073 39.130 0.00 0.00 0.00 4.30
5399 5860 9.834628 TTATATGCAAACTAAAAAGAAACGGAG 57.165 29.630 0.00 0.00 0.00 4.63
5400 5861 9.834628 CTTATATGCAAACTAAAAAGAAACGGA 57.165 29.630 0.00 0.00 0.00 4.69
5401 5862 9.834628 TCTTATATGCAAACTAAAAAGAAACGG 57.165 29.630 0.00 0.00 0.00 4.44
5409 5870 9.781834 CGACCAAATCTTATATGCAAACTAAAA 57.218 29.630 0.00 0.00 0.00 1.52
5410 5871 9.168451 TCGACCAAATCTTATATGCAAACTAAA 57.832 29.630 0.00 0.00 0.00 1.85
5411 5872 8.725405 TCGACCAAATCTTATATGCAAACTAA 57.275 30.769 0.00 0.00 0.00 2.24
5412 5873 8.725405 TTCGACCAAATCTTATATGCAAACTA 57.275 30.769 0.00 0.00 0.00 2.24
5413 5874 7.336931 ACTTCGACCAAATCTTATATGCAAACT 59.663 33.333 0.00 0.00 0.00 2.66
5414 5875 7.472543 ACTTCGACCAAATCTTATATGCAAAC 58.527 34.615 0.00 0.00 0.00 2.93
5415 5876 7.335673 TGACTTCGACCAAATCTTATATGCAAA 59.664 33.333 0.00 0.00 0.00 3.68
5416 5877 6.821160 TGACTTCGACCAAATCTTATATGCAA 59.179 34.615 0.00 0.00 0.00 4.08
5417 5878 6.345298 TGACTTCGACCAAATCTTATATGCA 58.655 36.000 0.00 0.00 0.00 3.96
5418 5879 6.844696 TGACTTCGACCAAATCTTATATGC 57.155 37.500 0.00 0.00 0.00 3.14
5419 5880 8.883731 AGTTTGACTTCGACCAAATCTTATATG 58.116 33.333 9.19 0.00 35.14 1.78
5420 5881 9.449719 AAGTTTGACTTCGACCAAATCTTATAT 57.550 29.630 9.19 0.00 31.77 0.86
5421 5882 8.842358 AAGTTTGACTTCGACCAAATCTTATA 57.158 30.769 9.19 0.00 31.77 0.98
5422 5883 7.745620 AAGTTTGACTTCGACCAAATCTTAT 57.254 32.000 9.19 0.00 31.77 1.73
5423 5884 7.066525 ACAAAGTTTGACTTCGACCAAATCTTA 59.933 33.333 22.23 0.00 37.47 2.10
5424 5885 6.127730 ACAAAGTTTGACTTCGACCAAATCTT 60.128 34.615 22.23 10.55 37.47 2.40
5425 5886 5.357032 ACAAAGTTTGACTTCGACCAAATCT 59.643 36.000 22.23 6.69 37.47 2.40
5426 5887 5.578776 ACAAAGTTTGACTTCGACCAAATC 58.421 37.500 22.23 5.13 37.47 2.17
5427 5888 5.576447 ACAAAGTTTGACTTCGACCAAAT 57.424 34.783 22.23 0.00 37.47 2.32
5428 5889 6.497785 TTACAAAGTTTGACTTCGACCAAA 57.502 33.333 22.23 3.54 37.47 3.28
5429 5890 6.149807 ACTTTACAAAGTTTGACTTCGACCAA 59.850 34.615 22.23 0.00 46.52 3.67
5430 5891 5.644636 ACTTTACAAAGTTTGACTTCGACCA 59.355 36.000 22.23 0.00 46.52 4.02
5431 5892 6.115450 ACTTTACAAAGTTTGACTTCGACC 57.885 37.500 22.23 0.00 46.52 4.79
5476 5937 9.982651 AGCGTTAGTATTGTAGATGTTGATATT 57.017 29.630 0.00 0.00 0.00 1.28
5518 5979 9.590451 CAATACTTTTAGGTGCATCATGAAATT 57.410 29.630 0.00 0.00 0.00 1.82
5519 5980 8.970020 TCAATACTTTTAGGTGCATCATGAAAT 58.030 29.630 0.00 0.00 0.00 2.17
5520 5981 8.347004 TCAATACTTTTAGGTGCATCATGAAA 57.653 30.769 0.00 0.00 0.00 2.69
5521 5982 7.936496 TCAATACTTTTAGGTGCATCATGAA 57.064 32.000 0.00 0.00 0.00 2.57
5522 5983 8.523915 AATCAATACTTTTAGGTGCATCATGA 57.476 30.769 0.00 0.00 0.00 3.07
5523 5984 8.627403 AGAATCAATACTTTTAGGTGCATCATG 58.373 33.333 0.00 0.00 0.00 3.07
5524 5985 8.757982 AGAATCAATACTTTTAGGTGCATCAT 57.242 30.769 0.00 0.00 0.00 2.45
5525 5986 9.851686 ATAGAATCAATACTTTTAGGTGCATCA 57.148 29.630 0.00 0.00 0.00 3.07
5589 6050 9.984190 TGGTTAAAGTCAAACTTTGTTAACTTT 57.016 25.926 17.38 17.38 46.83 2.66
5590 6051 9.984190 TTGGTTAAAGTCAAACTTTGTTAACTT 57.016 25.926 13.83 11.10 46.83 2.66
5591 6052 9.984190 TTTGGTTAAAGTCAAACTTTGTTAACT 57.016 25.926 13.83 7.11 46.83 2.24
5595 6056 9.719355 AAGATTTGGTTAAAGTCAAACTTTGTT 57.281 25.926 13.83 0.00 46.83 2.83
5624 6085 9.688592 CTCTCTTCATTTCTTTTTAGTTTGCAT 57.311 29.630 0.00 0.00 0.00 3.96
5625 6086 8.686334 ACTCTCTTCATTTCTTTTTAGTTTGCA 58.314 29.630 0.00 0.00 0.00 4.08
5634 6095 9.408648 TCCTTTTGTACTCTCTTCATTTCTTTT 57.591 29.630 0.00 0.00 0.00 2.27
5635 6096 8.980481 TCCTTTTGTACTCTCTTCATTTCTTT 57.020 30.769 0.00 0.00 0.00 2.52
5636 6097 8.432805 TCTCCTTTTGTACTCTCTTCATTTCTT 58.567 33.333 0.00 0.00 0.00 2.52
5637 6098 7.967908 TCTCCTTTTGTACTCTCTTCATTTCT 58.032 34.615 0.00 0.00 0.00 2.52
5638 6099 8.608844 TTCTCCTTTTGTACTCTCTTCATTTC 57.391 34.615 0.00 0.00 0.00 2.17
5639 6100 8.980481 TTTCTCCTTTTGTACTCTCTTCATTT 57.020 30.769 0.00 0.00 0.00 2.32
5640 6101 9.007901 CATTTCTCCTTTTGTACTCTCTTCATT 57.992 33.333 0.00 0.00 0.00 2.57
5641 6102 8.378565 TCATTTCTCCTTTTGTACTCTCTTCAT 58.621 33.333 0.00 0.00 0.00 2.57
5642 6103 7.735917 TCATTTCTCCTTTTGTACTCTCTTCA 58.264 34.615 0.00 0.00 0.00 3.02
5643 6104 8.608844 TTCATTTCTCCTTTTGTACTCTCTTC 57.391 34.615 0.00 0.00 0.00 2.87
5644 6105 8.214364 ACTTCATTTCTCCTTTTGTACTCTCTT 58.786 33.333 0.00 0.00 0.00 2.85
5645 6106 7.740805 ACTTCATTTCTCCTTTTGTACTCTCT 58.259 34.615 0.00 0.00 0.00 3.10
5646 6107 7.971183 ACTTCATTTCTCCTTTTGTACTCTC 57.029 36.000 0.00 0.00 0.00 3.20
5765 6248 1.406887 GGAACCGGACATGTATGTGCT 60.407 52.381 9.46 0.00 45.49 4.40
5766 6249 1.014352 GGAACCGGACATGTATGTGC 58.986 55.000 9.46 4.31 44.42 4.57
5778 6261 4.082408 TCAGCTACGATATAATGGAACCGG 60.082 45.833 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.