Multiple sequence alignment - TraesCS5D01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G392600 chr5D 100.000 4010 0 0 609 4618 460761853 460757844 0.000000e+00 7406
1 TraesCS5D01G392600 chr5D 100.000 344 0 0 1 344 460762461 460762118 1.810000e-178 636
2 TraesCS5D01G392600 chr5D 91.667 72 6 0 3915 3986 374634754 374634683 2.940000e-17 100
3 TraesCS5D01G392600 chr5A 90.007 2712 132 43 1985 4618 580949255 580946605 0.000000e+00 3378
4 TraesCS5D01G392600 chr5A 90.859 722 39 16 609 1326 580950494 580949796 0.000000e+00 942
5 TraesCS5D01G392600 chr5A 88.315 445 19 11 1360 1777 580949795 580949357 1.920000e-138 503
6 TraesCS5D01G392600 chr5A 87.586 145 15 2 201 344 580950731 580950589 1.030000e-36 165
7 TraesCS5D01G392600 chr5B 95.129 1971 62 14 1887 3828 566688995 566687030 0.000000e+00 3077
8 TraesCS5D01G392600 chr5B 89.155 1042 64 26 610 1615 566690054 566689026 0.000000e+00 1253
9 TraesCS5D01G392600 chr5B 96.845 634 17 1 3988 4618 566687033 566686400 0.000000e+00 1057


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G392600 chr5D 460757844 460762461 4617 True 4021.000000 7406 100.000000 1 4618 2 chr5D.!!$R2 4617
1 TraesCS5D01G392600 chr5A 580946605 580950731 4126 True 1247.000000 3378 89.191750 201 4618 4 chr5A.!!$R1 4417
2 TraesCS5D01G392600 chr5B 566686400 566690054 3654 True 1795.666667 3077 93.709667 610 4618 3 chr5B.!!$R1 4008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.258774 AACCAAAGATCCGGGGGATG 59.741 55.0 0.00 0.00 43.27 3.51 F
1327 1366 0.532573 CTGTAGTGCTGTCGGGTGAT 59.467 55.0 0.00 0.00 0.00 3.06 F
1817 1889 0.032130 GAAGGCATAGGATCGTCGCA 59.968 55.0 10.73 0.00 0.00 5.10 F
1820 1892 0.038251 GGCATAGGATCGTCGCATCA 60.038 55.0 10.73 0.00 0.00 3.07 F
1849 1921 0.243636 ATTTTGCTGTGGCGGCTTAC 59.756 50.0 11.43 0.69 42.25 2.34 F
1867 1939 0.693049 ACCTCTAGCCCAAGGTTGTG 59.307 55.0 0.00 0.00 43.45 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1870 0.032130 TGCGACGATCCTATGCCTTC 59.968 55.000 0.00 0.0 0.00 3.46 R
2494 2612 0.034186 TTGGCAGCCCAATACTCCTG 60.034 55.000 9.64 0.0 46.01 3.86 R
2726 2850 1.009829 CCTGGATACGAGCACAAAGC 58.990 55.000 0.00 0.0 42.45 3.51 R
2732 2856 2.419990 CCAAACATCCTGGATACGAGCA 60.420 50.000 9.27 0.0 42.51 4.26 R
3289 3413 3.111098 GCCTGATGATCAACGAAAATGC 58.889 45.455 0.00 0.0 0.00 3.56 R
3774 3909 3.502211 GCCTGAAGCAAAAACACTAGCTA 59.498 43.478 0.00 0.0 42.97 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.853355 CCACATAGCTCCTCCTTCAAT 57.147 47.619 0.00 0.00 0.00 2.57
21 22 4.162040 CCACATAGCTCCTCCTTCAATT 57.838 45.455 0.00 0.00 0.00 2.32
22 23 4.530875 CCACATAGCTCCTCCTTCAATTT 58.469 43.478 0.00 0.00 0.00 1.82
23 24 4.337555 CCACATAGCTCCTCCTTCAATTTG 59.662 45.833 0.00 0.00 0.00 2.32
24 25 4.337555 CACATAGCTCCTCCTTCAATTTGG 59.662 45.833 0.00 0.00 0.00 3.28
25 26 2.521547 AGCTCCTCCTTCAATTTGGG 57.478 50.000 0.00 0.00 0.00 4.12
26 27 1.995542 AGCTCCTCCTTCAATTTGGGA 59.004 47.619 0.00 0.00 0.00 4.37
27 28 2.095461 GCTCCTCCTTCAATTTGGGAC 58.905 52.381 0.00 0.00 0.00 4.46
28 29 2.728007 CTCCTCCTTCAATTTGGGACC 58.272 52.381 0.00 0.00 0.00 4.46
29 30 2.041620 CTCCTCCTTCAATTTGGGACCA 59.958 50.000 0.00 0.00 0.00 4.02
30 31 2.448961 TCCTCCTTCAATTTGGGACCAA 59.551 45.455 0.00 0.00 0.00 3.67
31 32 3.077391 TCCTCCTTCAATTTGGGACCAAT 59.923 43.478 4.36 0.00 35.70 3.16
32 33 3.448660 CCTCCTTCAATTTGGGACCAATC 59.551 47.826 4.36 0.00 35.70 2.67
33 34 4.347607 CTCCTTCAATTTGGGACCAATCT 58.652 43.478 4.36 0.00 35.70 2.40
34 35 4.750941 TCCTTCAATTTGGGACCAATCTT 58.249 39.130 4.36 0.00 35.70 2.40
35 36 4.527816 TCCTTCAATTTGGGACCAATCTTG 59.472 41.667 15.41 15.41 35.70 3.02
49 50 5.212532 CCAATCTTGGGATTTCAAACACA 57.787 39.130 0.73 0.00 44.70 3.72
50 51 4.990426 CCAATCTTGGGATTTCAAACACAC 59.010 41.667 0.73 0.00 44.70 3.82
51 52 3.980646 TCTTGGGATTTCAAACACACG 57.019 42.857 0.00 0.00 0.00 4.49
52 53 2.621055 TCTTGGGATTTCAAACACACGG 59.379 45.455 0.00 0.00 0.00 4.94
53 54 2.350057 TGGGATTTCAAACACACGGA 57.650 45.000 0.00 0.00 0.00 4.69
54 55 1.950909 TGGGATTTCAAACACACGGAC 59.049 47.619 0.00 0.00 0.00 4.79
55 56 2.227194 GGGATTTCAAACACACGGACT 58.773 47.619 0.00 0.00 0.00 3.85
56 57 3.181453 TGGGATTTCAAACACACGGACTA 60.181 43.478 0.00 0.00 0.00 2.59
57 58 3.435671 GGGATTTCAAACACACGGACTAG 59.564 47.826 0.00 0.00 0.00 2.57
58 59 4.062991 GGATTTCAAACACACGGACTAGT 58.937 43.478 0.00 0.00 0.00 2.57
59 60 4.514066 GGATTTCAAACACACGGACTAGTT 59.486 41.667 0.00 0.00 0.00 2.24
60 61 5.333875 GGATTTCAAACACACGGACTAGTTC 60.334 44.000 0.00 0.00 0.00 3.01
61 62 4.395959 TTCAAACACACGGACTAGTTCT 57.604 40.909 0.00 0.00 0.00 3.01
62 63 3.713288 TCAAACACACGGACTAGTTCTG 58.287 45.455 0.00 0.00 36.55 3.02
63 64 2.150397 AACACACGGACTAGTTCTGC 57.850 50.000 0.00 0.00 33.21 4.26
64 65 0.317479 ACACACGGACTAGTTCTGCC 59.683 55.000 0.00 0.00 33.21 4.85
65 66 0.603569 CACACGGACTAGTTCTGCCT 59.396 55.000 0.00 0.00 33.21 4.75
66 67 1.816835 CACACGGACTAGTTCTGCCTA 59.183 52.381 0.00 0.00 33.21 3.93
67 68 2.230508 CACACGGACTAGTTCTGCCTAA 59.769 50.000 0.00 0.00 33.21 2.69
68 69 3.097614 ACACGGACTAGTTCTGCCTAAT 58.902 45.455 0.00 0.00 33.21 1.73
69 70 3.514309 ACACGGACTAGTTCTGCCTAATT 59.486 43.478 0.00 0.00 33.21 1.40
70 71 4.020485 ACACGGACTAGTTCTGCCTAATTT 60.020 41.667 0.00 0.00 33.21 1.82
71 72 4.330074 CACGGACTAGTTCTGCCTAATTTG 59.670 45.833 0.00 0.00 33.21 2.32
72 73 4.222145 ACGGACTAGTTCTGCCTAATTTGA 59.778 41.667 0.00 0.00 33.21 2.69
73 74 5.104900 ACGGACTAGTTCTGCCTAATTTGAT 60.105 40.000 0.00 0.00 33.21 2.57
74 75 5.235186 CGGACTAGTTCTGCCTAATTTGATG 59.765 44.000 0.00 0.00 0.00 3.07
75 76 6.349300 GGACTAGTTCTGCCTAATTTGATGA 58.651 40.000 0.00 0.00 0.00 2.92
76 77 6.995091 GGACTAGTTCTGCCTAATTTGATGAT 59.005 38.462 0.00 0.00 0.00 2.45
77 78 7.172361 GGACTAGTTCTGCCTAATTTGATGATC 59.828 40.741 0.00 0.00 0.00 2.92
78 79 6.995091 ACTAGTTCTGCCTAATTTGATGATCC 59.005 38.462 0.00 0.00 0.00 3.36
79 80 4.818546 AGTTCTGCCTAATTTGATGATCCG 59.181 41.667 0.00 0.00 0.00 4.18
80 81 3.141398 TCTGCCTAATTTGATGATCCGC 58.859 45.455 0.00 0.00 0.00 5.54
81 82 2.880268 CTGCCTAATTTGATGATCCGCA 59.120 45.455 0.00 0.00 0.00 5.69
82 83 3.489355 TGCCTAATTTGATGATCCGCAT 58.511 40.909 0.00 0.00 40.77 4.73
83 84 3.890756 TGCCTAATTTGATGATCCGCATT 59.109 39.130 0.00 0.00 37.34 3.56
84 85 4.232221 GCCTAATTTGATGATCCGCATTG 58.768 43.478 0.00 0.00 37.34 2.82
85 86 4.022935 GCCTAATTTGATGATCCGCATTGA 60.023 41.667 0.00 0.00 37.34 2.57
86 87 5.507817 GCCTAATTTGATGATCCGCATTGAA 60.508 40.000 0.00 0.00 37.34 2.69
87 88 6.684686 CCTAATTTGATGATCCGCATTGAAT 58.315 36.000 0.00 0.00 37.34 2.57
88 89 7.149973 CCTAATTTGATGATCCGCATTGAATT 58.850 34.615 0.00 0.00 37.34 2.17
89 90 8.298854 CCTAATTTGATGATCCGCATTGAATTA 58.701 33.333 0.00 0.00 37.34 1.40
90 91 9.850628 CTAATTTGATGATCCGCATTGAATTAT 57.149 29.630 0.00 0.00 37.34 1.28
99 100 9.814899 TGATCCGCATTGAATTATTAAAAATGT 57.185 25.926 0.00 0.00 32.15 2.71
102 103 9.299963 TCCGCATTGAATTATTAAAAATGTCTG 57.700 29.630 8.35 0.00 32.15 3.51
103 104 8.542132 CCGCATTGAATTATTAAAAATGTCTGG 58.458 33.333 8.35 5.82 32.15 3.86
104 105 9.299963 CGCATTGAATTATTAAAAATGTCTGGA 57.700 29.630 8.35 0.00 32.15 3.86
115 116 5.712152 AAAATGTCTGGACTGTTTGATCC 57.288 39.130 2.38 0.00 35.37 3.36
116 117 4.371624 AATGTCTGGACTGTTTGATCCA 57.628 40.909 2.38 0.00 42.88 3.41
117 118 3.855255 TGTCTGGACTGTTTGATCCAA 57.145 42.857 2.38 0.00 44.42 3.53
118 119 4.163441 TGTCTGGACTGTTTGATCCAAA 57.837 40.909 2.38 0.00 44.42 3.28
119 120 4.728772 TGTCTGGACTGTTTGATCCAAAT 58.271 39.130 2.38 0.00 44.42 2.32
120 121 5.875224 TGTCTGGACTGTTTGATCCAAATA 58.125 37.500 2.38 0.00 44.42 1.40
121 122 6.484288 TGTCTGGACTGTTTGATCCAAATAT 58.516 36.000 2.38 0.00 44.42 1.28
122 123 6.947733 TGTCTGGACTGTTTGATCCAAATATT 59.052 34.615 2.38 0.00 44.42 1.28
123 124 7.121168 TGTCTGGACTGTTTGATCCAAATATTC 59.879 37.037 2.38 0.00 44.42 1.75
124 125 7.121168 GTCTGGACTGTTTGATCCAAATATTCA 59.879 37.037 0.00 0.00 44.42 2.57
125 126 7.835682 TCTGGACTGTTTGATCCAAATATTCAT 59.164 33.333 0.00 0.00 44.42 2.57
126 127 7.774134 TGGACTGTTTGATCCAAATATTCATG 58.226 34.615 0.00 0.00 42.14 3.07
127 128 7.147863 TGGACTGTTTGATCCAAATATTCATGG 60.148 37.037 0.31 0.31 42.14 3.66
137 138 7.822161 TCCAAATATTCATGGACATTTCGAT 57.178 32.000 4.97 0.00 40.74 3.59
138 139 7.650890 TCCAAATATTCATGGACATTTCGATG 58.349 34.615 4.97 0.00 40.74 3.84
139 140 7.501892 TCCAAATATTCATGGACATTTCGATGA 59.498 33.333 4.97 2.75 43.15 2.92
140 141 8.301720 CCAAATATTCATGGACATTTCGATGAT 58.698 33.333 7.30 2.18 43.94 2.45
141 142 9.338291 CAAATATTCATGGACATTTCGATGATC 57.662 33.333 7.30 0.00 43.94 2.92
142 143 5.954296 ATTCATGGACATTTCGATGATCC 57.046 39.130 7.30 0.00 43.94 3.36
143 144 4.420522 TCATGGACATTTCGATGATCCA 57.579 40.909 2.75 9.76 40.82 3.41
146 147 4.155063 TGGACATTTCGATGATCCATGT 57.845 40.909 4.57 0.60 34.50 3.21
147 148 4.525996 TGGACATTTCGATGATCCATGTT 58.474 39.130 4.57 0.00 34.50 2.71
148 149 4.336153 TGGACATTTCGATGATCCATGTTG 59.664 41.667 4.57 0.00 34.50 3.33
149 150 4.261322 GGACATTTCGATGATCCATGTTGG 60.261 45.833 0.00 0.00 39.43 3.77
183 184 1.358759 AAAAACTGGGTCTTGCGCG 59.641 52.632 0.00 0.00 0.00 6.86
184 185 1.098712 AAAAACTGGGTCTTGCGCGA 61.099 50.000 12.10 0.00 0.00 5.87
185 186 1.098712 AAAACTGGGTCTTGCGCGAA 61.099 50.000 12.10 0.00 0.00 4.70
186 187 1.507141 AAACTGGGTCTTGCGCGAAG 61.507 55.000 12.10 11.21 0.00 3.79
199 200 2.257371 CGAAGCTCGACCCGTGAA 59.743 61.111 0.00 0.00 43.74 3.18
200 201 1.372499 CGAAGCTCGACCCGTGAAA 60.372 57.895 0.00 0.00 43.74 2.69
201 202 1.615107 CGAAGCTCGACCCGTGAAAC 61.615 60.000 0.00 0.00 43.74 2.78
202 203 1.289800 GAAGCTCGACCCGTGAAACC 61.290 60.000 0.00 0.00 0.00 3.27
203 204 2.029964 GCTCGACCCGTGAAACCA 59.970 61.111 0.00 0.00 0.00 3.67
204 205 1.595929 GCTCGACCCGTGAAACCAA 60.596 57.895 0.00 0.00 0.00 3.67
205 206 1.161563 GCTCGACCCGTGAAACCAAA 61.162 55.000 0.00 0.00 0.00 3.28
206 207 0.865769 CTCGACCCGTGAAACCAAAG 59.134 55.000 0.00 0.00 0.00 2.77
207 208 0.464870 TCGACCCGTGAAACCAAAGA 59.535 50.000 0.00 0.00 0.00 2.52
208 209 1.071071 TCGACCCGTGAAACCAAAGAT 59.929 47.619 0.00 0.00 0.00 2.40
209 210 1.463444 CGACCCGTGAAACCAAAGATC 59.537 52.381 0.00 0.00 0.00 2.75
210 211 1.810755 GACCCGTGAAACCAAAGATCC 59.189 52.381 0.00 0.00 0.00 3.36
217 218 1.007607 AAACCAAAGATCCGGGGGAT 58.992 50.000 0.00 0.00 46.28 3.85
218 219 0.258774 AACCAAAGATCCGGGGGATG 59.741 55.000 0.00 0.00 43.27 3.51
250 251 3.334691 GGAGATGATGTTTTCCACGACA 58.665 45.455 0.00 0.00 0.00 4.35
255 256 1.003331 GATGTTTTCCACGACAACGCA 60.003 47.619 0.00 0.00 43.96 5.24
264 265 1.464608 CACGACAACGCATCTGGAAAT 59.535 47.619 0.00 0.00 43.96 2.17
270 271 1.742761 ACGCATCTGGAAATGTGGAG 58.257 50.000 2.89 0.00 40.64 3.86
275 276 0.613260 TCTGGAAATGTGGAGGTCGG 59.387 55.000 0.00 0.00 0.00 4.79
292 293 3.353836 GCCCGTGCTCGCTTTGAA 61.354 61.111 1.89 0.00 35.54 2.69
322 324 2.108250 GGCTCTCCTCTCCTCTACTCAT 59.892 54.545 0.00 0.00 0.00 2.90
324 326 3.149196 CTCTCCTCTCCTCTACTCATGC 58.851 54.545 0.00 0.00 0.00 4.06
335 337 4.148079 CTCTACTCATGCCACCAGAGATA 58.852 47.826 0.00 0.00 32.98 1.98
336 338 4.148079 TCTACTCATGCCACCAGAGATAG 58.852 47.826 0.00 0.00 33.69 2.08
659 661 3.383162 CCACAGGGACTAGGACAGT 57.617 57.895 0.00 0.00 41.47 3.55
661 663 2.816411 CCACAGGGACTAGGACAGTTA 58.184 52.381 0.00 0.00 37.72 2.24
662 664 3.375699 CCACAGGGACTAGGACAGTTAT 58.624 50.000 0.00 0.00 37.72 1.89
664 666 4.960469 CCACAGGGACTAGGACAGTTATTA 59.040 45.833 0.00 0.00 37.72 0.98
668 670 8.307483 CACAGGGACTAGGACAGTTATTATATG 58.693 40.741 0.00 0.00 37.72 1.78
696 698 3.900966 ATTACCAAACTACCCTCGGAC 57.099 47.619 0.00 0.00 0.00 4.79
700 702 1.337823 CCAAACTACCCTCGGACACAG 60.338 57.143 0.00 0.00 0.00 3.66
702 704 0.830444 AACTACCCTCGGACACAGCA 60.830 55.000 0.00 0.00 0.00 4.41
741 744 1.864565 AACGGCCAACTTTTTGCATC 58.135 45.000 2.24 0.00 0.00 3.91
743 746 0.670239 CGGCCAACTTTTTGCATCCC 60.670 55.000 2.24 0.00 0.00 3.85
791 797 7.333528 ACGGTTTATTTATACTCCACGTAGA 57.666 36.000 0.00 0.00 0.00 2.59
792 798 7.420800 ACGGTTTATTTATACTCCACGTAGAG 58.579 38.462 9.58 9.58 39.91 2.43
793 799 7.283127 ACGGTTTATTTATACTCCACGTAGAGA 59.717 37.037 18.13 2.05 37.33 3.10
795 801 9.807649 GGTTTATTTATACTCCACGTAGAGAAA 57.192 33.333 18.13 8.22 37.33 2.52
834 840 3.219645 AAAACCATTGGCGGCCACG 62.220 57.895 23.78 15.85 44.63 4.94
1275 1304 1.793134 CGGCTCCGTTATCCGCTAGT 61.793 60.000 0.00 0.00 36.53 2.57
1291 1330 4.686554 CCGCTAGTCTTGCTCAATAATACC 59.313 45.833 4.76 0.00 0.00 2.73
1308 1347 2.813908 CACGAGTAAGCCGGTGCC 60.814 66.667 1.90 0.00 38.69 5.01
1327 1366 0.532573 CTGTAGTGCTGTCGGGTGAT 59.467 55.000 0.00 0.00 0.00 3.06
1347 1386 2.427410 GAAAGCTGCGCCGTGTTG 60.427 61.111 4.18 0.00 0.00 3.33
1358 1397 1.594293 CCGTGTTGACGCCTTCACT 60.594 57.895 0.00 0.00 44.68 3.41
1375 1414 1.522355 CTGCGCTTGATCCGGTGAT 60.522 57.895 9.73 0.00 0.00 3.06
1377 1416 1.815421 GCGCTTGATCCGGTGATGT 60.815 57.895 0.00 0.00 0.00 3.06
1565 1611 5.163499 CGTAAATTCTAGGCCAGACTCTTCT 60.163 44.000 5.01 0.00 31.12 2.85
1608 1654 1.665679 GTGACAGCACCATTATGACGG 59.334 52.381 0.00 0.00 39.14 4.79
1612 1658 1.401552 CAGCACCATTATGACGGGTTG 59.598 52.381 0.00 0.00 31.03 3.77
1675 1729 4.142469 CCAAATTAGGAACGGCTTAACTGG 60.142 45.833 0.00 0.00 0.00 4.00
1676 1730 4.563140 AATTAGGAACGGCTTAACTGGA 57.437 40.909 0.00 0.00 0.00 3.86
1677 1731 3.604875 TTAGGAACGGCTTAACTGGAG 57.395 47.619 0.00 0.00 0.00 3.86
1682 1736 3.445096 GGAACGGCTTAACTGGAGTAGTA 59.555 47.826 0.00 0.00 39.18 1.82
1683 1737 4.439837 GGAACGGCTTAACTGGAGTAGTAG 60.440 50.000 0.00 0.00 39.18 2.57
1684 1738 3.694926 ACGGCTTAACTGGAGTAGTAGT 58.305 45.455 0.00 0.00 39.18 2.73
1686 1740 3.066481 CGGCTTAACTGGAGTAGTAGTCC 59.934 52.174 16.14 16.14 39.18 3.85
1698 1770 7.713750 TGGAGTAGTAGTCCTTTATTTGATCG 58.286 38.462 22.09 0.00 38.55 3.69
1702 1774 9.939802 AGTAGTAGTCCTTTATTTGATCGTTTT 57.060 29.630 0.00 0.00 0.00 2.43
1711 1783 8.336080 CCTTTATTTGATCGTTTTAGTAGGCTC 58.664 37.037 0.00 0.00 0.00 4.70
1721 1793 4.931661 TTTAGTAGGCTCGTAGATTGGG 57.068 45.455 0.00 0.00 33.89 4.12
1728 1800 1.473434 GCTCGTAGATTGGGGAACCTG 60.473 57.143 0.00 0.00 45.85 4.00
1732 1804 6.133338 CTCGTAGATTGGGGAACCTGTTCA 62.133 50.000 11.78 0.00 45.85 3.18
1733 1805 7.372312 CTCGTAGATTGGGGAACCTGTTCAT 62.372 48.000 11.78 0.00 45.85 2.57
1740 1812 2.044123 GGAACCTGTTCATAGCTGGG 57.956 55.000 11.78 0.00 41.20 4.45
1741 1813 1.383523 GAACCTGTTCATAGCTGGGC 58.616 55.000 0.00 0.00 39.31 5.36
1742 1814 0.995024 AACCTGTTCATAGCTGGGCT 59.005 50.000 0.00 0.00 43.41 5.19
1769 1841 1.963515 GTGGCACCCAGAGAAACAATT 59.036 47.619 6.29 0.00 32.34 2.32
1777 1849 4.825085 ACCCAGAGAAACAATTTAGCGAAA 59.175 37.500 0.00 0.00 0.00 3.46
1778 1850 5.476945 ACCCAGAGAAACAATTTAGCGAAAT 59.523 36.000 0.00 0.00 36.82 2.17
1779 1851 5.801947 CCCAGAGAAACAATTTAGCGAAATG 59.198 40.000 5.50 3.44 35.38 2.32
1780 1852 5.287035 CCAGAGAAACAATTTAGCGAAATGC 59.713 40.000 5.50 0.00 46.98 3.56
1791 1863 2.857592 GCGAAATGCATCATTCCAGT 57.142 45.000 0.00 0.00 45.45 4.00
1792 1864 3.155093 GCGAAATGCATCATTCCAGTT 57.845 42.857 0.00 0.00 45.45 3.16
1793 1865 4.291540 GCGAAATGCATCATTCCAGTTA 57.708 40.909 0.00 0.00 45.45 2.24
1794 1866 4.285292 GCGAAATGCATCATTCCAGTTAG 58.715 43.478 0.00 0.00 45.45 2.34
1795 1867 4.035558 GCGAAATGCATCATTCCAGTTAGA 59.964 41.667 0.00 0.00 45.45 2.10
1796 1868 5.745514 CGAAATGCATCATTCCAGTTAGAG 58.254 41.667 0.00 0.00 32.43 2.43
1797 1869 5.525012 CGAAATGCATCATTCCAGTTAGAGA 59.475 40.000 0.00 0.00 32.43 3.10
1798 1870 6.292757 CGAAATGCATCATTCCAGTTAGAGAG 60.293 42.308 0.00 0.00 32.43 3.20
1799 1871 5.883685 ATGCATCATTCCAGTTAGAGAGA 57.116 39.130 0.00 0.00 0.00 3.10
1800 1872 5.682234 TGCATCATTCCAGTTAGAGAGAA 57.318 39.130 0.00 0.00 0.00 2.87
1801 1873 5.668471 TGCATCATTCCAGTTAGAGAGAAG 58.332 41.667 0.00 0.00 0.00 2.85
1802 1874 5.055812 GCATCATTCCAGTTAGAGAGAAGG 58.944 45.833 0.00 0.00 0.00 3.46
1803 1875 4.744795 TCATTCCAGTTAGAGAGAAGGC 57.255 45.455 0.00 0.00 0.00 4.35
1804 1876 4.096681 TCATTCCAGTTAGAGAGAAGGCA 58.903 43.478 0.00 0.00 0.00 4.75
1805 1877 4.718774 TCATTCCAGTTAGAGAGAAGGCAT 59.281 41.667 0.00 0.00 0.00 4.40
1806 1878 5.899547 TCATTCCAGTTAGAGAGAAGGCATA 59.100 40.000 0.00 0.00 0.00 3.14
1807 1879 5.860941 TTCCAGTTAGAGAGAAGGCATAG 57.139 43.478 0.00 0.00 0.00 2.23
1808 1880 4.219115 TCCAGTTAGAGAGAAGGCATAGG 58.781 47.826 0.00 0.00 0.00 2.57
1809 1881 4.079154 TCCAGTTAGAGAGAAGGCATAGGA 60.079 45.833 0.00 0.00 0.00 2.94
1810 1882 4.837860 CCAGTTAGAGAGAAGGCATAGGAT 59.162 45.833 0.00 0.00 0.00 3.24
1811 1883 5.047377 CCAGTTAGAGAGAAGGCATAGGATC 60.047 48.000 0.00 0.00 0.00 3.36
1812 1884 4.764823 AGTTAGAGAGAAGGCATAGGATCG 59.235 45.833 0.00 0.00 0.00 3.69
1813 1885 3.237268 AGAGAGAAGGCATAGGATCGT 57.763 47.619 0.00 0.00 0.00 3.73
1814 1886 3.153919 AGAGAGAAGGCATAGGATCGTC 58.846 50.000 0.00 0.00 0.00 4.20
1815 1887 1.883275 AGAGAAGGCATAGGATCGTCG 59.117 52.381 0.00 0.00 0.00 5.12
1816 1888 0.315568 AGAAGGCATAGGATCGTCGC 59.684 55.000 0.00 0.00 0.00 5.19
1817 1889 0.032130 GAAGGCATAGGATCGTCGCA 59.968 55.000 10.73 0.00 0.00 5.10
1818 1890 0.681733 AAGGCATAGGATCGTCGCAT 59.318 50.000 10.73 2.42 0.00 4.73
1819 1891 0.244994 AGGCATAGGATCGTCGCATC 59.755 55.000 10.73 0.00 0.00 3.91
1820 1892 0.038251 GGCATAGGATCGTCGCATCA 60.038 55.000 10.73 0.00 0.00 3.07
1821 1893 1.404717 GGCATAGGATCGTCGCATCAT 60.405 52.381 10.73 3.24 0.00 2.45
1822 1894 1.657594 GCATAGGATCGTCGCATCATG 59.342 52.381 0.00 0.00 0.00 3.07
1823 1895 2.928301 GCATAGGATCGTCGCATCATGT 60.928 50.000 0.00 0.00 0.00 3.21
1824 1896 3.673323 GCATAGGATCGTCGCATCATGTA 60.673 47.826 0.00 0.00 0.00 2.29
1825 1897 2.423926 AGGATCGTCGCATCATGTAC 57.576 50.000 0.00 0.00 0.00 2.90
1826 1898 1.957177 AGGATCGTCGCATCATGTACT 59.043 47.619 0.00 0.00 0.00 2.73
1827 1899 2.054363 GGATCGTCGCATCATGTACTG 58.946 52.381 0.00 0.00 0.00 2.74
1828 1900 2.287608 GGATCGTCGCATCATGTACTGA 60.288 50.000 0.00 0.00 38.53 3.41
1829 1901 2.931512 TCGTCGCATCATGTACTGAA 57.068 45.000 0.00 0.00 37.44 3.02
1830 1902 3.224884 TCGTCGCATCATGTACTGAAA 57.775 42.857 0.00 0.00 37.44 2.69
1831 1903 3.780902 TCGTCGCATCATGTACTGAAAT 58.219 40.909 0.00 0.00 37.44 2.17
1832 1904 4.180817 TCGTCGCATCATGTACTGAAATT 58.819 39.130 0.00 0.00 37.44 1.82
1833 1905 4.629634 TCGTCGCATCATGTACTGAAATTT 59.370 37.500 0.00 0.00 37.44 1.82
1834 1906 5.121611 TCGTCGCATCATGTACTGAAATTTT 59.878 36.000 0.00 0.00 37.44 1.82
1835 1907 5.225743 CGTCGCATCATGTACTGAAATTTTG 59.774 40.000 0.00 0.00 37.44 2.44
1836 1908 5.003778 GTCGCATCATGTACTGAAATTTTGC 59.996 40.000 0.00 1.92 37.44 3.68
1837 1909 5.097529 CGCATCATGTACTGAAATTTTGCT 58.902 37.500 0.00 0.00 37.44 3.91
1838 1910 5.004061 CGCATCATGTACTGAAATTTTGCTG 59.996 40.000 0.00 0.00 37.44 4.41
1839 1911 5.865552 GCATCATGTACTGAAATTTTGCTGT 59.134 36.000 0.00 0.00 37.44 4.40
1840 1912 6.183360 GCATCATGTACTGAAATTTTGCTGTG 60.183 38.462 0.00 0.00 37.44 3.66
1841 1913 5.771469 TCATGTACTGAAATTTTGCTGTGG 58.229 37.500 0.00 0.00 0.00 4.17
1842 1914 3.976169 TGTACTGAAATTTTGCTGTGGC 58.024 40.909 0.00 0.00 39.26 5.01
1843 1915 2.138596 ACTGAAATTTTGCTGTGGCG 57.861 45.000 0.00 0.00 42.25 5.69
1849 1921 0.243636 ATTTTGCTGTGGCGGCTTAC 59.756 50.000 11.43 0.69 42.25 2.34
1866 1938 2.337359 TACCTCTAGCCCAAGGTTGT 57.663 50.000 6.19 0.00 43.45 3.32
1867 1939 0.693049 ACCTCTAGCCCAAGGTTGTG 59.307 55.000 0.00 0.00 43.45 3.33
1869 1941 1.351017 CCTCTAGCCCAAGGTTGTGAA 59.649 52.381 0.00 0.00 0.00 3.18
1872 1944 4.141390 CCTCTAGCCCAAGGTTGTGAATAT 60.141 45.833 0.00 0.00 0.00 1.28
1884 1956 8.918658 CAAGGTTGTGAATATTTCTGAATGTTG 58.081 33.333 0.00 0.00 28.21 3.33
1918 1991 4.574013 CAGTCAAGATCCAGCTTACCATTC 59.426 45.833 0.00 0.00 0.00 2.67
1936 2009 4.440663 CCATTCGAGCTGTTGAGACTGATA 60.441 45.833 0.00 0.00 0.00 2.15
1937 2010 3.766676 TCGAGCTGTTGAGACTGATAC 57.233 47.619 0.00 0.00 0.00 2.24
1939 2012 3.759086 TCGAGCTGTTGAGACTGATACTT 59.241 43.478 0.00 0.00 0.00 2.24
2066 2139 3.193263 CAAATCTCGTGATGTGAGGAGG 58.807 50.000 11.45 0.00 39.67 4.30
2145 2222 4.518970 ACTATGTTTTTGCATCCGTGTCTT 59.481 37.500 0.00 0.00 0.00 3.01
2315 2426 1.946081 ACATGTCATGTGCAACGAACA 59.054 42.857 17.74 0.00 43.01 3.18
2433 2546 6.235664 TCGATAGGGAAGCAACTTTTACTTT 58.764 36.000 0.00 0.00 0.00 2.66
2644 2767 6.092944 CCAACAAATAGCAGTAACGTGGATTA 59.907 38.462 0.00 0.00 0.00 1.75
2687 2810 8.499403 AGTGCTCCTGAGAATTATTTTTCTAC 57.501 34.615 0.00 0.00 36.10 2.59
2691 2814 7.012799 GCTCCTGAGAATTATTTTTCTACCTGG 59.987 40.741 0.00 0.00 36.10 4.45
2696 2819 9.457436 TGAGAATTATTTTTCTACCTGGTTACC 57.543 33.333 3.84 0.00 36.10 2.85
2701 2824 9.990868 ATTATTTTTCTACCTGGTTACCTGAAT 57.009 29.630 3.84 2.35 0.00 2.57
2703 2826 7.519032 TTTTTCTACCTGGTTACCTGAATTG 57.481 36.000 3.84 0.00 0.00 2.32
2726 2850 7.504924 TGTGTTAACCTGACTCTATTTTTGG 57.495 36.000 2.48 0.00 0.00 3.28
2732 2856 5.140454 ACCTGACTCTATTTTTGGCTTTGT 58.860 37.500 0.00 0.00 0.00 2.83
2847 2971 3.479489 TCTGAGCAAGACAGCAAATGAA 58.521 40.909 0.00 0.00 36.85 2.57
2958 3082 2.671351 CGCTTTCATCCTGTACGACACT 60.671 50.000 0.00 0.00 0.00 3.55
3008 3132 6.293626 GCTGTGAGTAGATCATCTCTCTTCTC 60.294 46.154 14.93 0.00 40.92 2.87
3021 3145 8.597167 TCATCTCTCTTCTCAAAGGATGTAAAA 58.403 33.333 0.00 0.00 33.71 1.52
3179 3303 1.200948 GCAGGCTGTGGAAACTCATTC 59.799 52.381 17.16 0.00 37.31 2.67
3289 3413 4.108336 CGGTACTCATCATCTTGACACTG 58.892 47.826 0.00 0.00 0.00 3.66
3694 3829 5.129485 CACCTGGTGGTAGAGATTTATCAGT 59.871 44.000 19.23 0.00 46.60 3.41
3774 3909 7.115947 GTCTTTTGTATCGTGTTACTAGCTTGT 59.884 37.037 6.00 6.00 0.00 3.16
3792 3953 4.912187 GCTTGTAGCTAGTGTTTTTGCTTC 59.088 41.667 0.00 0.00 38.45 3.86
3812 3973 5.689383 TTCAGGCAGTTTTTCATGTACTC 57.311 39.130 0.00 0.00 0.00 2.59
3909 4070 0.458370 GGCCACAATGTGATTTCCGC 60.458 55.000 15.91 8.18 35.23 5.54
3930 4091 2.609459 CCTGGAAAAAGATCGACGGATG 59.391 50.000 0.00 0.00 31.51 3.51
3946 4107 5.509163 CGACGGATGGAGGTCTGTATATTTT 60.509 44.000 0.00 0.00 37.82 1.82
3947 4108 6.294342 CGACGGATGGAGGTCTGTATATTTTA 60.294 42.308 0.00 0.00 37.82 1.52
3948 4109 6.756221 ACGGATGGAGGTCTGTATATTTTAC 58.244 40.000 0.00 0.00 35.99 2.01
3949 4110 6.325545 ACGGATGGAGGTCTGTATATTTTACA 59.674 38.462 0.00 0.00 35.99 2.41
3950 4111 7.147620 ACGGATGGAGGTCTGTATATTTTACAA 60.148 37.037 0.00 0.00 35.99 2.41
3951 4112 7.385205 CGGATGGAGGTCTGTATATTTTACAAG 59.615 40.741 0.00 0.00 0.00 3.16
3952 4113 8.211629 GGATGGAGGTCTGTATATTTTACAAGT 58.788 37.037 0.00 0.00 0.00 3.16
3953 4114 8.964476 ATGGAGGTCTGTATATTTTACAAGTG 57.036 34.615 0.00 0.00 0.00 3.16
3954 4115 7.913789 TGGAGGTCTGTATATTTTACAAGTGT 58.086 34.615 0.00 0.00 0.00 3.55
3955 4116 9.038072 TGGAGGTCTGTATATTTTACAAGTGTA 57.962 33.333 0.00 0.00 0.00 2.90
4036 4197 6.927416 TCATGATCAAATTGGAAGAAACAGG 58.073 36.000 0.00 0.00 0.00 4.00
4051 4212 7.231317 GGAAGAAACAGGCATATTATCATTCCA 59.769 37.037 0.00 0.00 32.22 3.53
4190 4351 2.158900 CCACATAGACAGGGCCAAGTAG 60.159 54.545 6.18 0.00 0.00 2.57
4302 4463 6.711194 CCTTGTAGATCAGATGCAGATTGAAT 59.289 38.462 0.00 0.00 0.00 2.57
4377 4541 5.984725 TGTAAATCCTCGAATGGAAGCTTA 58.015 37.500 0.00 0.00 39.85 3.09
4563 4727 2.418368 TGCACTGGTTCTTGTTCTGT 57.582 45.000 0.00 0.00 0.00 3.41
4605 4769 2.875933 GTTGATCAAGGACGAACCAACA 59.124 45.455 8.80 0.00 42.04 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.853355 ATTGAAGGAGGAGCTATGTGG 57.147 47.619 0.00 0.00 0.00 4.17
2 3 4.530875 CCAAATTGAAGGAGGAGCTATGT 58.469 43.478 0.00 0.00 0.00 2.29
3 4 3.887716 CCCAAATTGAAGGAGGAGCTATG 59.112 47.826 0.00 0.00 0.00 2.23
5 6 3.054361 GTCCCAAATTGAAGGAGGAGCTA 60.054 47.826 0.00 0.00 0.00 3.32
7 8 2.095461 GTCCCAAATTGAAGGAGGAGC 58.905 52.381 0.00 0.00 0.00 4.70
8 9 2.041620 TGGTCCCAAATTGAAGGAGGAG 59.958 50.000 0.00 0.00 0.00 3.69
9 10 2.069775 TGGTCCCAAATTGAAGGAGGA 58.930 47.619 0.00 0.00 0.00 3.71
10 11 2.603075 TGGTCCCAAATTGAAGGAGG 57.397 50.000 0.00 0.00 0.00 4.30
11 12 4.347607 AGATTGGTCCCAAATTGAAGGAG 58.652 43.478 2.32 0.00 39.55 3.69
12 13 4.402616 AGATTGGTCCCAAATTGAAGGA 57.597 40.909 2.32 0.00 39.55 3.36
13 14 4.322953 CCAAGATTGGTCCCAAATTGAAGG 60.323 45.833 20.48 8.96 43.43 3.46
14 15 4.824289 CCAAGATTGGTCCCAAATTGAAG 58.176 43.478 20.48 8.18 43.43 3.02
15 16 4.888326 CCAAGATTGGTCCCAAATTGAA 57.112 40.909 20.48 0.00 43.43 2.69
28 29 4.681025 CGTGTGTTTGAAATCCCAAGATTG 59.319 41.667 0.00 0.00 42.03 2.67
29 30 4.261994 CCGTGTGTTTGAAATCCCAAGATT 60.262 41.667 0.00 0.00 44.86 2.40
30 31 3.255642 CCGTGTGTTTGAAATCCCAAGAT 59.744 43.478 0.00 0.00 0.00 2.40
31 32 2.621055 CCGTGTGTTTGAAATCCCAAGA 59.379 45.455 0.00 0.00 0.00 3.02
32 33 2.621055 TCCGTGTGTTTGAAATCCCAAG 59.379 45.455 0.00 0.00 0.00 3.61
33 34 2.359531 GTCCGTGTGTTTGAAATCCCAA 59.640 45.455 0.00 0.00 0.00 4.12
34 35 1.950909 GTCCGTGTGTTTGAAATCCCA 59.049 47.619 0.00 0.00 0.00 4.37
35 36 2.227194 AGTCCGTGTGTTTGAAATCCC 58.773 47.619 0.00 0.00 0.00 3.85
36 37 4.062991 ACTAGTCCGTGTGTTTGAAATCC 58.937 43.478 0.00 0.00 0.00 3.01
37 38 5.465724 AGAACTAGTCCGTGTGTTTGAAATC 59.534 40.000 0.00 0.00 0.00 2.17
38 39 5.236478 CAGAACTAGTCCGTGTGTTTGAAAT 59.764 40.000 0.00 0.00 0.00 2.17
39 40 4.569162 CAGAACTAGTCCGTGTGTTTGAAA 59.431 41.667 0.00 0.00 0.00 2.69
40 41 4.116961 CAGAACTAGTCCGTGTGTTTGAA 58.883 43.478 0.00 0.00 0.00 2.69
41 42 3.713288 CAGAACTAGTCCGTGTGTTTGA 58.287 45.455 0.00 0.00 0.00 2.69
42 43 2.221055 GCAGAACTAGTCCGTGTGTTTG 59.779 50.000 0.00 0.00 0.00 2.93
43 44 2.480845 GCAGAACTAGTCCGTGTGTTT 58.519 47.619 0.00 0.00 0.00 2.83
44 45 1.270147 GGCAGAACTAGTCCGTGTGTT 60.270 52.381 0.00 0.00 0.00 3.32
45 46 0.317479 GGCAGAACTAGTCCGTGTGT 59.683 55.000 0.00 0.00 0.00 3.72
46 47 0.603569 AGGCAGAACTAGTCCGTGTG 59.396 55.000 0.00 0.00 0.00 3.82
47 48 2.211250 TAGGCAGAACTAGTCCGTGT 57.789 50.000 0.00 0.00 0.00 4.49
48 49 3.802948 ATTAGGCAGAACTAGTCCGTG 57.197 47.619 0.00 0.00 0.00 4.94
49 50 4.222145 TCAAATTAGGCAGAACTAGTCCGT 59.778 41.667 0.00 0.00 0.00 4.69
50 51 4.755411 TCAAATTAGGCAGAACTAGTCCG 58.245 43.478 0.00 0.00 0.00 4.79
51 52 6.349300 TCATCAAATTAGGCAGAACTAGTCC 58.651 40.000 0.00 0.00 0.00 3.85
52 53 7.172361 GGATCATCAAATTAGGCAGAACTAGTC 59.828 40.741 0.00 0.00 0.00 2.59
53 54 6.995091 GGATCATCAAATTAGGCAGAACTAGT 59.005 38.462 0.00 0.00 0.00 2.57
54 55 6.146837 CGGATCATCAAATTAGGCAGAACTAG 59.853 42.308 0.00 0.00 0.00 2.57
55 56 5.991606 CGGATCATCAAATTAGGCAGAACTA 59.008 40.000 0.00 0.00 0.00 2.24
56 57 4.818546 CGGATCATCAAATTAGGCAGAACT 59.181 41.667 0.00 0.00 0.00 3.01
57 58 4.555511 GCGGATCATCAAATTAGGCAGAAC 60.556 45.833 0.00 0.00 0.00 3.01
58 59 3.565482 GCGGATCATCAAATTAGGCAGAA 59.435 43.478 0.00 0.00 0.00 3.02
59 60 3.141398 GCGGATCATCAAATTAGGCAGA 58.859 45.455 0.00 0.00 0.00 4.26
60 61 2.880268 TGCGGATCATCAAATTAGGCAG 59.120 45.455 0.00 0.00 0.00 4.85
61 62 2.929641 TGCGGATCATCAAATTAGGCA 58.070 42.857 0.00 0.00 0.00 4.75
62 63 4.022935 TCAATGCGGATCATCAAATTAGGC 60.023 41.667 0.00 0.00 33.40 3.93
63 64 5.694231 TCAATGCGGATCATCAAATTAGG 57.306 39.130 0.00 0.00 33.40 2.69
64 65 9.850628 ATAATTCAATGCGGATCATCAAATTAG 57.149 29.630 0.00 0.00 36.27 1.73
73 74 9.814899 ACATTTTTAATAATTCAATGCGGATCA 57.185 25.926 0.00 0.00 0.00 2.92
76 77 9.299963 CAGACATTTTTAATAATTCAATGCGGA 57.700 29.630 0.00 0.00 0.00 5.54
77 78 8.542132 CCAGACATTTTTAATAATTCAATGCGG 58.458 33.333 0.00 0.00 0.00 5.69
78 79 9.299963 TCCAGACATTTTTAATAATTCAATGCG 57.700 29.630 0.00 0.00 0.00 4.73
89 90 8.306761 GGATCAAACAGTCCAGACATTTTTAAT 58.693 33.333 0.00 0.00 34.57 1.40
90 91 7.286546 TGGATCAAACAGTCCAGACATTTTTAA 59.713 33.333 0.00 0.00 39.51 1.52
91 92 6.775142 TGGATCAAACAGTCCAGACATTTTTA 59.225 34.615 0.00 0.00 39.51 1.52
92 93 5.598005 TGGATCAAACAGTCCAGACATTTTT 59.402 36.000 0.00 0.00 39.51 1.94
93 94 5.139727 TGGATCAAACAGTCCAGACATTTT 58.860 37.500 0.00 0.00 39.51 1.82
94 95 4.728772 TGGATCAAACAGTCCAGACATTT 58.271 39.130 0.00 0.00 39.51 2.32
95 96 4.371624 TGGATCAAACAGTCCAGACATT 57.628 40.909 0.00 0.00 39.51 2.71
96 97 4.371624 TTGGATCAAACAGTCCAGACAT 57.628 40.909 0.00 0.00 44.74 3.06
97 98 3.855255 TTGGATCAAACAGTCCAGACA 57.145 42.857 0.00 0.00 44.74 3.41
98 99 7.121168 TGAATATTTGGATCAAACAGTCCAGAC 59.879 37.037 0.00 0.00 44.74 3.51
99 100 7.174413 TGAATATTTGGATCAAACAGTCCAGA 58.826 34.615 0.00 0.00 44.74 3.86
100 101 7.395190 TGAATATTTGGATCAAACAGTCCAG 57.605 36.000 0.00 0.00 44.74 3.86
101 102 7.147863 CCATGAATATTTGGATCAAACAGTCCA 60.148 37.037 0.43 0.00 42.55 4.02
102 103 7.068593 TCCATGAATATTTGGATCAAACAGTCC 59.931 37.037 4.97 0.00 37.10 3.85
103 104 7.917505 GTCCATGAATATTTGGATCAAACAGTC 59.082 37.037 11.23 0.00 43.61 3.51
104 105 7.396907 TGTCCATGAATATTTGGATCAAACAGT 59.603 33.333 11.23 0.00 43.61 3.55
105 106 7.774134 TGTCCATGAATATTTGGATCAAACAG 58.226 34.615 11.23 0.00 43.61 3.16
106 107 7.715266 TGTCCATGAATATTTGGATCAAACA 57.285 32.000 11.23 3.66 43.61 2.83
107 108 9.603921 AAATGTCCATGAATATTTGGATCAAAC 57.396 29.630 11.23 1.45 43.61 2.93
108 109 9.820725 GAAATGTCCATGAATATTTGGATCAAA 57.179 29.630 11.23 0.00 43.61 2.69
109 110 8.136800 CGAAATGTCCATGAATATTTGGATCAA 58.863 33.333 11.23 3.02 43.61 2.57
110 111 7.501892 TCGAAATGTCCATGAATATTTGGATCA 59.498 33.333 11.23 11.06 43.61 2.92
111 112 7.874940 TCGAAATGTCCATGAATATTTGGATC 58.125 34.615 11.23 5.24 43.61 3.36
112 113 7.822161 TCGAAATGTCCATGAATATTTGGAT 57.178 32.000 11.23 0.00 43.61 3.41
113 114 7.501892 TCATCGAAATGTCCATGAATATTTGGA 59.498 33.333 4.97 4.97 39.70 3.53
114 115 7.650890 TCATCGAAATGTCCATGAATATTTGG 58.349 34.615 0.00 0.31 34.32 3.28
115 116 9.338291 GATCATCGAAATGTCCATGAATATTTG 57.662 33.333 0.00 0.00 34.32 2.32
116 117 8.517878 GGATCATCGAAATGTCCATGAATATTT 58.482 33.333 0.00 0.00 35.18 1.40
117 118 7.666804 TGGATCATCGAAATGTCCATGAATATT 59.333 33.333 0.00 0.00 37.77 1.28
118 119 7.170277 TGGATCATCGAAATGTCCATGAATAT 58.830 34.615 0.00 0.00 37.77 1.28
119 120 6.532826 TGGATCATCGAAATGTCCATGAATA 58.467 36.000 0.00 0.00 37.77 1.75
120 121 5.379187 TGGATCATCGAAATGTCCATGAAT 58.621 37.500 0.00 0.00 37.77 2.57
121 122 4.779696 TGGATCATCGAAATGTCCATGAA 58.220 39.130 0.00 0.00 37.77 2.57
122 123 4.420522 TGGATCATCGAAATGTCCATGA 57.579 40.909 0.00 0.00 37.77 3.07
124 125 4.722220 ACATGGATCATCGAAATGTCCAT 58.278 39.130 15.21 15.21 45.07 3.41
125 126 4.155063 ACATGGATCATCGAAATGTCCA 57.845 40.909 12.58 12.58 42.26 4.02
126 127 4.261322 CCAACATGGATCATCGAAATGTCC 60.261 45.833 0.00 0.00 40.96 4.02
127 128 4.576053 TCCAACATGGATCATCGAAATGTC 59.424 41.667 0.00 0.00 42.67 3.06
128 129 4.525996 TCCAACATGGATCATCGAAATGT 58.474 39.130 0.00 0.00 42.67 2.71
165 166 1.098712 TCGCGCAAGACCCAGTTTTT 61.099 50.000 8.75 0.00 43.02 1.94
166 167 1.098712 TTCGCGCAAGACCCAGTTTT 61.099 50.000 8.75 0.00 43.02 2.43
167 168 1.507141 CTTCGCGCAAGACCCAGTTT 61.507 55.000 8.75 0.00 43.02 2.66
168 169 1.961277 CTTCGCGCAAGACCCAGTT 60.961 57.895 8.75 0.00 43.02 3.16
169 170 2.357517 CTTCGCGCAAGACCCAGT 60.358 61.111 8.75 0.00 43.02 4.00
170 171 3.793144 GCTTCGCGCAAGACCCAG 61.793 66.667 19.38 1.90 43.02 4.45
171 172 4.314440 AGCTTCGCGCAAGACCCA 62.314 61.111 19.38 0.00 42.61 4.51
172 173 3.491652 GAGCTTCGCGCAAGACCC 61.492 66.667 19.38 5.92 42.61 4.46
173 174 3.843240 CGAGCTTCGCGCAAGACC 61.843 66.667 19.38 10.72 42.61 3.85
174 175 2.805353 TCGAGCTTCGCGCAAGAC 60.805 61.111 19.38 12.20 40.21 3.01
175 176 2.805353 GTCGAGCTTCGCGCAAGA 60.805 61.111 19.38 2.48 40.21 3.02
176 177 3.843240 GGTCGAGCTTCGCGCAAG 61.843 66.667 8.75 11.57 40.21 4.01
181 182 3.909258 TTCACGGGTCGAGCTTCGC 62.909 63.158 15.18 0.00 40.21 4.70
182 183 1.372499 TTTCACGGGTCGAGCTTCG 60.372 57.895 15.18 12.83 42.10 3.79
183 184 1.289800 GGTTTCACGGGTCGAGCTTC 61.290 60.000 15.18 0.00 0.00 3.86
184 185 1.301479 GGTTTCACGGGTCGAGCTT 60.301 57.895 15.18 0.00 0.00 3.74
185 186 2.035237 TTGGTTTCACGGGTCGAGCT 62.035 55.000 15.18 0.00 0.00 4.09
186 187 1.161563 TTTGGTTTCACGGGTCGAGC 61.162 55.000 5.93 5.93 0.00 5.03
187 188 0.865769 CTTTGGTTTCACGGGTCGAG 59.134 55.000 0.00 0.00 0.00 4.04
188 189 0.464870 TCTTTGGTTTCACGGGTCGA 59.535 50.000 0.00 0.00 0.00 4.20
189 190 1.463444 GATCTTTGGTTTCACGGGTCG 59.537 52.381 0.00 0.00 0.00 4.79
190 191 1.810755 GGATCTTTGGTTTCACGGGTC 59.189 52.381 0.00 0.00 0.00 4.46
191 192 1.880646 CGGATCTTTGGTTTCACGGGT 60.881 52.381 0.00 0.00 0.00 5.28
192 193 0.802494 CGGATCTTTGGTTTCACGGG 59.198 55.000 0.00 0.00 0.00 5.28
193 194 0.802494 CCGGATCTTTGGTTTCACGG 59.198 55.000 0.00 0.00 0.00 4.94
194 195 0.802494 CCCGGATCTTTGGTTTCACG 59.198 55.000 0.73 0.00 0.00 4.35
195 196 1.173913 CCCCGGATCTTTGGTTTCAC 58.826 55.000 0.73 0.00 0.00 3.18
196 197 0.039035 CCCCCGGATCTTTGGTTTCA 59.961 55.000 0.73 0.00 0.00 2.69
197 198 0.330267 TCCCCCGGATCTTTGGTTTC 59.670 55.000 0.73 0.00 0.00 2.78
198 199 1.007607 ATCCCCCGGATCTTTGGTTT 58.992 50.000 0.73 0.00 38.09 3.27
199 200 0.258774 CATCCCCCGGATCTTTGGTT 59.741 55.000 0.73 0.00 40.98 3.67
200 201 0.623324 TCATCCCCCGGATCTTTGGT 60.623 55.000 0.73 0.00 40.98 3.67
201 202 0.550914 TTCATCCCCCGGATCTTTGG 59.449 55.000 0.73 0.00 40.98 3.28
202 203 1.972872 CTTCATCCCCCGGATCTTTG 58.027 55.000 0.73 0.00 40.98 2.77
203 204 0.183731 GCTTCATCCCCCGGATCTTT 59.816 55.000 0.73 0.00 40.98 2.52
204 205 0.988145 TGCTTCATCCCCCGGATCTT 60.988 55.000 0.73 0.00 40.98 2.40
205 206 1.384502 TGCTTCATCCCCCGGATCT 60.385 57.895 0.73 0.00 40.98 2.75
206 207 1.227973 GTGCTTCATCCCCCGGATC 60.228 63.158 0.73 0.00 40.98 3.36
207 208 2.919043 GTGCTTCATCCCCCGGAT 59.081 61.111 0.73 0.00 44.21 4.18
208 209 3.781307 CGTGCTTCATCCCCCGGA 61.781 66.667 0.73 0.00 35.55 5.14
209 210 2.996168 GATCGTGCTTCATCCCCCGG 62.996 65.000 0.00 0.00 0.00 5.73
210 211 1.595382 GATCGTGCTTCATCCCCCG 60.595 63.158 0.00 0.00 0.00 5.73
217 218 1.102978 TCATCTCCGATCGTGCTTCA 58.897 50.000 15.09 0.00 0.00 3.02
218 219 2.057316 CATCATCTCCGATCGTGCTTC 58.943 52.381 15.09 0.00 0.00 3.86
250 251 2.086869 CTCCACATTTCCAGATGCGTT 58.913 47.619 0.00 0.00 0.00 4.84
255 256 1.210478 CCGACCTCCACATTTCCAGAT 59.790 52.381 0.00 0.00 0.00 2.90
275 276 2.400896 TTTTCAAAGCGAGCACGGGC 62.401 55.000 0.00 0.00 40.15 6.13
292 293 2.355209 GGAGAGGAGAGCCATCGTTTTT 60.355 50.000 0.00 0.00 36.29 1.94
664 666 7.781219 GGGTAGTTTGGTAATTTGGGTACATAT 59.219 37.037 0.00 0.00 0.00 1.78
668 670 5.573219 AGGGTAGTTTGGTAATTTGGGTAC 58.427 41.667 0.00 0.00 0.00 3.34
676 678 3.055602 GTGTCCGAGGGTAGTTTGGTAAT 60.056 47.826 0.00 0.00 0.00 1.89
702 704 9.654663 GGCCGTTTATTATCTGTAGATTATCTT 57.345 33.333 0.00 0.00 36.05 2.40
802 808 2.950433 TGGTTTTCGTGTCTCGGTATC 58.050 47.619 0.00 0.00 40.32 2.24
814 820 2.126110 GGCCGCCAATGGTTTTCG 60.126 61.111 3.91 0.00 0.00 3.46
834 840 1.476891 GAAATTCCCGGGGCTTTTCTC 59.523 52.381 23.50 5.58 0.00 2.87
1275 1304 5.339008 ACTCGTGGTATTATTGAGCAAGA 57.661 39.130 0.00 0.00 33.00 3.02
1291 1330 2.813908 GGCACCGGCTTACTCGTG 60.814 66.667 0.00 0.00 40.87 4.35
1308 1347 0.532573 ATCACCCGACAGCACTACAG 59.467 55.000 0.00 0.00 0.00 2.74
1358 1397 1.815003 CATCACCGGATCAAGCGCA 60.815 57.895 9.46 0.00 0.00 6.09
1466 1508 1.662629 CGCCACTGAAAGCTACATCTG 59.337 52.381 0.00 0.00 37.60 2.90
1565 1611 7.823799 TCACATAACTTATGTTGCAGATCTGAA 59.176 33.333 27.04 14.12 46.69 3.02
1608 1654 8.760569 ACGAAACAATGATTAAATTCAACAACC 58.239 29.630 0.00 0.00 0.00 3.77
1675 1729 9.583765 AAACGATCAAATAAAGGACTACTACTC 57.416 33.333 0.00 0.00 0.00 2.59
1676 1730 9.939802 AAAACGATCAAATAAAGGACTACTACT 57.060 29.630 0.00 0.00 0.00 2.57
1682 1736 9.379791 CCTACTAAAACGATCAAATAAAGGACT 57.620 33.333 0.00 0.00 0.00 3.85
1683 1737 8.121086 GCCTACTAAAACGATCAAATAAAGGAC 58.879 37.037 0.00 0.00 0.00 3.85
1684 1738 8.044908 AGCCTACTAAAACGATCAAATAAAGGA 58.955 33.333 0.00 0.00 0.00 3.36
1686 1740 8.056571 CGAGCCTACTAAAACGATCAAATAAAG 58.943 37.037 0.00 0.00 0.00 1.85
1698 1770 5.048507 CCCAATCTACGAGCCTACTAAAAC 58.951 45.833 0.00 0.00 0.00 2.43
1702 1774 2.444388 TCCCCAATCTACGAGCCTACTA 59.556 50.000 0.00 0.00 0.00 1.82
1711 1783 2.027561 TGAACAGGTTCCCCAATCTACG 60.028 50.000 9.49 0.00 38.77 3.51
1721 1793 2.019156 GCCCAGCTATGAACAGGTTCC 61.019 57.143 9.49 0.00 38.77 3.62
1728 1800 1.467920 AAGCAAGCCCAGCTATGAAC 58.532 50.000 0.00 0.00 42.53 3.18
1732 1804 1.133976 CCACTAAGCAAGCCCAGCTAT 60.134 52.381 0.00 0.00 42.53 2.97
1733 1805 0.253044 CCACTAAGCAAGCCCAGCTA 59.747 55.000 0.00 0.00 42.53 3.32
1739 1811 2.343426 GGGTGCCACTAAGCAAGCC 61.343 63.158 0.00 0.00 46.19 4.35
1740 1812 1.589716 CTGGGTGCCACTAAGCAAGC 61.590 60.000 0.00 0.00 46.19 4.01
1741 1813 0.036732 TCTGGGTGCCACTAAGCAAG 59.963 55.000 0.00 0.00 46.19 4.01
1742 1814 0.036732 CTCTGGGTGCCACTAAGCAA 59.963 55.000 0.00 0.00 46.19 3.91
1769 1841 3.947196 ACTGGAATGATGCATTTCGCTAA 59.053 39.130 0.00 0.00 43.06 3.09
1777 1849 5.883685 TCTCTCTAACTGGAATGATGCAT 57.116 39.130 0.00 0.00 0.00 3.96
1778 1850 5.396101 CCTTCTCTCTAACTGGAATGATGCA 60.396 44.000 0.00 0.00 0.00 3.96
1779 1851 5.055812 CCTTCTCTCTAACTGGAATGATGC 58.944 45.833 0.00 0.00 0.00 3.91
1780 1852 5.055812 GCCTTCTCTCTAACTGGAATGATG 58.944 45.833 0.00 0.00 0.00 3.07
1781 1853 4.718774 TGCCTTCTCTCTAACTGGAATGAT 59.281 41.667 0.00 0.00 0.00 2.45
1782 1854 4.096681 TGCCTTCTCTCTAACTGGAATGA 58.903 43.478 0.00 0.00 0.00 2.57
1783 1855 4.478206 TGCCTTCTCTCTAACTGGAATG 57.522 45.455 0.00 0.00 0.00 2.67
1784 1856 5.306678 CCTATGCCTTCTCTCTAACTGGAAT 59.693 44.000 0.00 0.00 0.00 3.01
1785 1857 4.651503 CCTATGCCTTCTCTCTAACTGGAA 59.348 45.833 0.00 0.00 0.00 3.53
1786 1858 4.079154 TCCTATGCCTTCTCTCTAACTGGA 60.079 45.833 0.00 0.00 0.00 3.86
1787 1859 4.219115 TCCTATGCCTTCTCTCTAACTGG 58.781 47.826 0.00 0.00 0.00 4.00
1788 1860 5.335583 CGATCCTATGCCTTCTCTCTAACTG 60.336 48.000 0.00 0.00 0.00 3.16
1789 1861 4.764823 CGATCCTATGCCTTCTCTCTAACT 59.235 45.833 0.00 0.00 0.00 2.24
1790 1862 4.521256 ACGATCCTATGCCTTCTCTCTAAC 59.479 45.833 0.00 0.00 0.00 2.34
1791 1863 4.730966 ACGATCCTATGCCTTCTCTCTAA 58.269 43.478 0.00 0.00 0.00 2.10
1792 1864 4.328536 GACGATCCTATGCCTTCTCTCTA 58.671 47.826 0.00 0.00 0.00 2.43
1793 1865 3.153919 GACGATCCTATGCCTTCTCTCT 58.846 50.000 0.00 0.00 0.00 3.10
1794 1866 2.095466 CGACGATCCTATGCCTTCTCTC 60.095 54.545 0.00 0.00 0.00 3.20
1795 1867 1.883275 CGACGATCCTATGCCTTCTCT 59.117 52.381 0.00 0.00 0.00 3.10
1796 1868 1.667467 GCGACGATCCTATGCCTTCTC 60.667 57.143 0.00 0.00 0.00 2.87
1797 1869 0.315568 GCGACGATCCTATGCCTTCT 59.684 55.000 0.00 0.00 0.00 2.85
1798 1870 0.032130 TGCGACGATCCTATGCCTTC 59.968 55.000 0.00 0.00 0.00 3.46
1799 1871 0.681733 ATGCGACGATCCTATGCCTT 59.318 50.000 0.00 0.00 0.00 4.35
1800 1872 0.244994 GATGCGACGATCCTATGCCT 59.755 55.000 0.00 0.00 0.00 4.75
1801 1873 0.038251 TGATGCGACGATCCTATGCC 60.038 55.000 0.00 0.00 0.00 4.40
1802 1874 1.657594 CATGATGCGACGATCCTATGC 59.342 52.381 0.00 0.00 0.00 3.14
1803 1875 2.951726 ACATGATGCGACGATCCTATG 58.048 47.619 0.00 3.19 0.00 2.23
1804 1876 3.759086 AGTACATGATGCGACGATCCTAT 59.241 43.478 0.00 0.00 0.00 2.57
1805 1877 3.058224 CAGTACATGATGCGACGATCCTA 60.058 47.826 0.00 0.00 0.00 2.94
1806 1878 1.957177 AGTACATGATGCGACGATCCT 59.043 47.619 0.00 0.00 0.00 3.24
1807 1879 2.054363 CAGTACATGATGCGACGATCC 58.946 52.381 0.00 0.00 0.00 3.36
1808 1880 3.000082 TCAGTACATGATGCGACGATC 58.000 47.619 0.00 0.00 31.12 3.69
1809 1881 3.436700 TTCAGTACATGATGCGACGAT 57.563 42.857 0.00 0.00 37.89 3.73
1810 1882 2.931512 TTCAGTACATGATGCGACGA 57.068 45.000 0.00 0.00 37.89 4.20
1811 1883 4.520743 AATTTCAGTACATGATGCGACG 57.479 40.909 0.00 0.00 37.89 5.12
1812 1884 5.003778 GCAAAATTTCAGTACATGATGCGAC 59.996 40.000 0.00 0.00 37.89 5.19
1813 1885 5.094812 GCAAAATTTCAGTACATGATGCGA 58.905 37.500 0.00 0.00 37.89 5.10
1814 1886 5.004061 CAGCAAAATTTCAGTACATGATGCG 59.996 40.000 0.00 0.00 41.64 4.73
1815 1887 5.865552 ACAGCAAAATTTCAGTACATGATGC 59.134 36.000 0.00 3.22 38.60 3.91
1816 1888 6.309494 CCACAGCAAAATTTCAGTACATGATG 59.691 38.462 0.00 0.00 37.89 3.07
1817 1889 6.392354 CCACAGCAAAATTTCAGTACATGAT 58.608 36.000 0.00 0.00 37.89 2.45
1818 1890 5.771469 CCACAGCAAAATTTCAGTACATGA 58.229 37.500 0.00 0.00 35.62 3.07
1819 1891 4.386652 GCCACAGCAAAATTTCAGTACATG 59.613 41.667 0.00 0.00 39.53 3.21
1820 1892 4.559153 GCCACAGCAAAATTTCAGTACAT 58.441 39.130 0.00 0.00 39.53 2.29
1821 1893 3.549827 CGCCACAGCAAAATTTCAGTACA 60.550 43.478 0.00 0.00 39.83 2.90
1822 1894 2.979813 CGCCACAGCAAAATTTCAGTAC 59.020 45.455 0.00 0.00 39.83 2.73
1823 1895 2.030363 CCGCCACAGCAAAATTTCAGTA 60.030 45.455 0.00 0.00 39.83 2.74
1824 1896 1.269726 CCGCCACAGCAAAATTTCAGT 60.270 47.619 0.00 0.00 39.83 3.41
1825 1897 1.421382 CCGCCACAGCAAAATTTCAG 58.579 50.000 0.00 0.00 39.83 3.02
1826 1898 0.599728 GCCGCCACAGCAAAATTTCA 60.600 50.000 0.00 0.00 39.83 2.69
1827 1899 0.319813 AGCCGCCACAGCAAAATTTC 60.320 50.000 0.00 0.00 39.83 2.17
1828 1900 0.106521 AAGCCGCCACAGCAAAATTT 59.893 45.000 0.00 0.00 39.83 1.82
1829 1901 0.965439 TAAGCCGCCACAGCAAAATT 59.035 45.000 0.00 0.00 39.83 1.82
1830 1902 0.243636 GTAAGCCGCCACAGCAAAAT 59.756 50.000 0.00 0.00 39.83 1.82
1831 1903 1.657556 GTAAGCCGCCACAGCAAAA 59.342 52.632 0.00 0.00 39.83 2.44
1832 1904 2.265182 GGTAAGCCGCCACAGCAAA 61.265 57.895 0.00 0.00 39.83 3.68
1833 1905 2.671619 GGTAAGCCGCCACAGCAA 60.672 61.111 0.00 0.00 39.83 3.91
1834 1906 3.605749 GAGGTAAGCCGCCACAGCA 62.606 63.158 0.00 0.00 39.83 4.41
1835 1907 1.956629 TAGAGGTAAGCCGCCACAGC 61.957 60.000 0.00 0.00 40.50 4.40
1836 1908 0.103208 CTAGAGGTAAGCCGCCACAG 59.897 60.000 0.00 0.00 40.50 3.66
1837 1909 1.956629 GCTAGAGGTAAGCCGCCACA 61.957 60.000 0.00 0.00 40.50 4.17
1838 1910 1.227292 GCTAGAGGTAAGCCGCCAC 60.227 63.158 0.00 0.00 40.50 5.01
1839 1911 3.217231 GCTAGAGGTAAGCCGCCA 58.783 61.111 0.00 0.00 40.50 5.69
1849 1921 0.984230 TCACAACCTTGGGCTAGAGG 59.016 55.000 0.00 0.00 39.02 3.69
1866 1938 6.252967 ACGCACAACATTCAGAAATATTCA 57.747 33.333 0.00 0.00 0.00 2.57
1867 1939 7.566858 AAACGCACAACATTCAGAAATATTC 57.433 32.000 0.00 0.00 0.00 1.75
1869 1941 8.911662 GTTTAAACGCACAACATTCAGAAATAT 58.088 29.630 1.89 0.00 0.00 1.28
1872 1944 6.093404 TGTTTAAACGCACAACATTCAGAAA 58.907 32.000 13.45 0.00 0.00 2.52
1884 1956 4.024387 TGGATCTTGACTGTTTAAACGCAC 60.024 41.667 13.45 7.50 0.00 5.34
1918 1991 3.773860 AGTATCAGTCTCAACAGCTCG 57.226 47.619 0.00 0.00 0.00 5.03
1936 2009 4.210331 ACAGCAGGAATCAAGACAAAAGT 58.790 39.130 0.00 0.00 0.00 2.66
1937 2010 4.843220 ACAGCAGGAATCAAGACAAAAG 57.157 40.909 0.00 0.00 0.00 2.27
1939 2012 4.206375 TGAACAGCAGGAATCAAGACAAA 58.794 39.130 0.00 0.00 0.00 2.83
2066 2139 0.606673 GGGTTCAGGCAAGACTCCAC 60.607 60.000 0.00 0.00 0.00 4.02
2132 2209 3.616821 CGAATCTTTAAGACACGGATGCA 59.383 43.478 12.32 0.00 0.00 3.96
2145 2222 6.294361 TCCCTTCTTCATGACGAATCTTTA 57.706 37.500 14.35 0.00 31.69 1.85
2315 2426 3.077519 GCTCCCGAGTGGTATGCGT 62.078 63.158 0.00 0.00 34.77 5.24
2450 2568 7.395190 TGTCAGCAAGCATGATATTTAAGTT 57.605 32.000 0.00 0.00 0.00 2.66
2494 2612 0.034186 TTGGCAGCCCAATACTCCTG 60.034 55.000 9.64 0.00 46.01 3.86
2555 2676 7.869800 ACATTTTCTTCAAAAGCAACAAAACA 58.130 26.923 0.00 0.00 34.92 2.83
2687 2810 5.048294 GGTTAACACAATTCAGGTAACCAGG 60.048 44.000 20.87 0.00 36.61 4.45
2691 2814 6.485648 AGTCAGGTTAACACAATTCAGGTAAC 59.514 38.462 8.10 6.19 0.00 2.50
2695 2818 5.308825 AGAGTCAGGTTAACACAATTCAGG 58.691 41.667 8.10 0.00 0.00 3.86
2696 2819 8.553459 AATAGAGTCAGGTTAACACAATTCAG 57.447 34.615 8.10 0.00 0.00 3.02
2701 2824 7.469456 GCCAAAAATAGAGTCAGGTTAACACAA 60.469 37.037 8.10 0.00 0.00 3.33
2703 2826 6.206829 AGCCAAAAATAGAGTCAGGTTAACAC 59.793 38.462 8.10 0.00 0.00 3.32
2726 2850 1.009829 CCTGGATACGAGCACAAAGC 58.990 55.000 0.00 0.00 42.45 3.51
2732 2856 2.419990 CCAAACATCCTGGATACGAGCA 60.420 50.000 9.27 0.00 42.51 4.26
3179 3303 3.825611 CCTTTGGGGAATGGCGCG 61.826 66.667 0.00 0.00 37.23 6.86
3224 3348 5.242393 ACAAACAAAGATGAGATGGGTGAAG 59.758 40.000 0.00 0.00 0.00 3.02
3289 3413 3.111098 GCCTGATGATCAACGAAAATGC 58.889 45.455 0.00 0.00 0.00 3.56
3774 3909 3.502211 GCCTGAAGCAAAAACACTAGCTA 59.498 43.478 0.00 0.00 42.97 3.32
3789 3950 5.471456 AGAGTACATGAAAAACTGCCTGAAG 59.529 40.000 0.00 0.00 0.00 3.02
3792 3953 6.372659 ACATAGAGTACATGAAAAACTGCCTG 59.627 38.462 0.00 0.00 0.00 4.85
3812 3973 4.360563 CGGAGCCTTACTGTACAACATAG 58.639 47.826 0.00 0.00 0.00 2.23
3909 4070 2.380084 TCCGTCGATCTTTTTCCAGG 57.620 50.000 0.00 0.00 0.00 4.45
3921 4082 0.253894 TACAGACCTCCATCCGTCGA 59.746 55.000 0.00 0.00 34.10 4.20
3946 4107 5.969435 CGTTTCAGAGCGATATACACTTGTA 59.031 40.000 0.00 0.00 34.67 2.41
3947 4108 4.798907 CGTTTCAGAGCGATATACACTTGT 59.201 41.667 0.00 0.00 0.00 3.16
3948 4109 5.034797 TCGTTTCAGAGCGATATACACTTG 58.965 41.667 0.00 0.00 33.44 3.16
3949 4110 5.244785 TCGTTTCAGAGCGATATACACTT 57.755 39.130 0.00 0.00 33.44 3.16
3950 4111 4.895224 TCGTTTCAGAGCGATATACACT 57.105 40.909 0.00 0.00 33.44 3.55
3951 4112 5.212934 TCATCGTTTCAGAGCGATATACAC 58.787 41.667 10.42 0.00 45.61 2.90
3952 4113 5.432885 TCATCGTTTCAGAGCGATATACA 57.567 39.130 10.42 0.00 45.61 2.29
3953 4114 5.513495 GGATCATCGTTTCAGAGCGATATAC 59.487 44.000 10.42 6.23 45.61 1.47
3954 4115 5.183140 TGGATCATCGTTTCAGAGCGATATA 59.817 40.000 10.42 4.71 45.61 0.86
3955 4116 4.021981 TGGATCATCGTTTCAGAGCGATAT 60.022 41.667 10.42 6.46 45.61 1.63
4036 4197 7.436080 CACACTGGTTTTGGAATGATAATATGC 59.564 37.037 0.00 0.00 0.00 3.14
4051 4212 3.056179 CCAGGTTTTGTCACACTGGTTTT 60.056 43.478 4.32 0.00 42.83 2.43
4166 4327 2.487746 TGGCCCTGTCTATGTGGATA 57.512 50.000 0.00 0.00 0.00 2.59
4302 4463 1.304464 TCTCCGAAGAGAGGCTGCA 60.304 57.895 0.50 0.00 44.42 4.41
4377 4541 2.127708 GTGGAAGATCACCCCATACCT 58.872 52.381 0.00 0.00 31.94 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.