Multiple sequence alignment - TraesCS5D01G392200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G392200 chr5D 100.000 3615 0 0 1 3615 460647061 460650675 0.000000e+00 6676.0
1 TraesCS5D01G392200 chr5D 100.000 127 0 0 3470 3596 460652886 460652760 6.030000e-58 235.0
2 TraesCS5D01G392200 chr5D 94.872 39 2 0 495 533 467599599 467599637 1.080000e-05 62.1
3 TraesCS5D01G392200 chr5A 91.114 1418 66 20 1523 2890 580800550 580801957 0.000000e+00 1866.0
4 TraesCS5D01G392200 chr5A 88.518 749 39 12 623 1329 580799548 580800291 0.000000e+00 863.0
5 TraesCS5D01G392200 chr5A 92.793 222 16 0 1313 1534 580800307 580800528 4.500000e-84 322.0
6 TraesCS5D01G392200 chr5A 84.195 348 32 11 255 583 580799202 580799545 2.090000e-82 316.0
7 TraesCS5D01G392200 chr5A 81.558 385 38 12 3107 3471 580802508 580802879 1.640000e-73 287.0
8 TraesCS5D01G392200 chr5A 95.775 142 4 2 3460 3600 279670411 279670551 1.010000e-55 228.0
9 TraesCS5D01G392200 chr5A 94.030 134 5 1 19 152 580798920 580799050 2.200000e-47 200.0
10 TraesCS5D01G392200 chr5B 91.779 888 42 13 1995 2854 566503277 566504161 0.000000e+00 1206.0
11 TraesCS5D01G392200 chr5B 86.589 343 23 15 3153 3473 566504303 566504644 1.230000e-94 357.0
12 TraesCS5D01G392200 chr5B 77.516 467 48 32 658 1086 566501884 566502331 1.010000e-55 228.0
13 TraesCS5D01G392200 chr6D 100.000 127 0 0 3470 3596 379557280 379557154 6.030000e-58 235.0
14 TraesCS5D01G392200 chr6D 99.213 127 1 0 3470 3596 379534224 379534098 2.810000e-56 230.0
15 TraesCS5D01G392200 chr2A 94.667 150 5 3 3452 3600 708949189 708949042 2.810000e-56 230.0
16 TraesCS5D01G392200 chr7B 98.438 128 2 0 3469 3596 537460998 537460871 3.630000e-55 226.0
17 TraesCS5D01G392200 chr7A 97.037 135 3 1 3463 3596 222942316 222942450 3.630000e-55 226.0
18 TraesCS5D01G392200 chr7A 96.324 136 4 1 3466 3601 540886066 540886200 4.700000e-54 222.0
19 TraesCS5D01G392200 chr1B 93.836 146 5 4 3455 3597 681792345 681792489 2.190000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G392200 chr5D 460647061 460650675 3614 False 6676.000000 6676 100.000000 1 3615 1 chr5D.!!$F1 3614
1 TraesCS5D01G392200 chr5A 580798920 580802879 3959 False 642.333333 1866 88.701333 19 3471 6 chr5A.!!$F2 3452
2 TraesCS5D01G392200 chr5B 566501884 566504644 2760 False 597.000000 1206 85.294667 658 3473 3 chr5B.!!$F1 2815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.176680 CAGCCCGTCTGAAGCTACAT 59.823 55.0 0.0 0.0 45.72 2.29 F
536 637 0.252558 TTCCCAGACCTCACCTACCC 60.253 60.0 0.0 0.0 0.00 3.69 F
538 639 0.635009 CCCAGACCTCACCTACCCTA 59.365 60.0 0.0 0.0 0.00 3.53 F
1807 2246 0.961019 TGTTTTCTGATGGCTGTGGC 59.039 50.0 0.0 0.0 37.82 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 1568 1.071699 TGAGCCCGTCCTATTTATGGC 59.928 52.381 0.00 0.00 39.17 4.40 R
2299 2796 0.243907 TTCCTTGAGCTCTTCGTCGG 59.756 55.000 16.19 6.27 0.00 4.79 R
2374 2871 2.846206 TGAGAAGAGGGTGCCAACATAT 59.154 45.455 0.00 0.00 0.00 1.78 R
3573 4662 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.647424 ACACCTGTTACCAAACATGTTG 57.353 40.909 12.82 2.87 44.43 3.33
34 35 4.274147 ACACCTGTTACCAAACATGTTGA 58.726 39.130 12.82 0.00 44.43 3.18
35 36 4.892934 ACACCTGTTACCAAACATGTTGAT 59.107 37.500 12.82 3.31 44.43 2.57
50 51 7.061752 ACATGTTGATACTTTTCTAAGTCGC 57.938 36.000 0.00 0.00 43.45 5.19
93 94 0.176680 CAGCCCGTCTGAAGCTACAT 59.823 55.000 0.00 0.00 45.72 2.29
99 100 2.926200 CCGTCTGAAGCTACATCTGTTG 59.074 50.000 0.00 0.00 0.00 3.33
133 134 0.904649 TCCTATGGACAGTGGCACAG 59.095 55.000 21.41 15.03 41.80 3.66
159 160 2.432456 CGTAGCTGCACCGCTCAA 60.432 61.111 3.37 0.00 41.30 3.02
160 161 2.027073 CGTAGCTGCACCGCTCAAA 61.027 57.895 3.37 0.00 41.30 2.69
161 162 1.565156 CGTAGCTGCACCGCTCAAAA 61.565 55.000 3.37 0.00 41.30 2.44
162 163 0.591170 GTAGCTGCACCGCTCAAAAA 59.409 50.000 3.37 0.00 41.30 1.94
201 202 5.199024 CTGCAGTAGATCAAGCAGTAGAT 57.801 43.478 5.25 0.00 46.92 1.98
202 203 4.941657 TGCAGTAGATCAAGCAGTAGATG 58.058 43.478 0.00 0.00 32.48 2.90
203 204 4.646492 TGCAGTAGATCAAGCAGTAGATGA 59.354 41.667 0.00 0.00 32.48 2.92
204 205 5.303845 TGCAGTAGATCAAGCAGTAGATGAT 59.696 40.000 0.00 0.00 36.54 2.45
205 206 6.183360 TGCAGTAGATCAAGCAGTAGATGATT 60.183 38.462 0.00 0.00 38.28 2.57
206 207 6.705381 GCAGTAGATCAAGCAGTAGATGATTT 59.295 38.462 0.00 0.00 34.61 2.17
207 208 7.095691 GCAGTAGATCAAGCAGTAGATGATTTC 60.096 40.741 0.00 0.00 34.61 2.17
212 213 5.431765 TCAAGCAGTAGATGATTTCCTTCC 58.568 41.667 0.00 0.00 34.61 3.46
213 214 4.429854 AGCAGTAGATGATTTCCTTCCC 57.570 45.455 0.00 0.00 0.00 3.97
215 216 3.748989 GCAGTAGATGATTTCCTTCCCCC 60.749 52.174 0.00 0.00 0.00 5.40
216 217 3.718956 CAGTAGATGATTTCCTTCCCCCT 59.281 47.826 0.00 0.00 0.00 4.79
220 221 3.203934 AGATGATTTCCTTCCCCCTTCAG 59.796 47.826 0.00 0.00 0.00 3.02
221 222 1.005924 TGATTTCCTTCCCCCTTCAGC 59.994 52.381 0.00 0.00 0.00 4.26
250 277 1.202651 ACCTGTACACGCTTTGCTTCT 60.203 47.619 0.00 0.00 0.00 2.85
258 285 1.604278 ACGCTTTGCTTCTCCTGTTTC 59.396 47.619 0.00 0.00 0.00 2.78
259 286 1.398960 CGCTTTGCTTCTCCTGTTTCG 60.399 52.381 0.00 0.00 0.00 3.46
260 287 1.873591 GCTTTGCTTCTCCTGTTTCGA 59.126 47.619 0.00 0.00 0.00 3.71
274 356 2.614983 TGTTTCGAAGCCACTTTGGTAC 59.385 45.455 9.65 0.00 40.46 3.34
275 357 2.876550 GTTTCGAAGCCACTTTGGTACT 59.123 45.455 0.00 0.00 40.46 2.73
292 374 6.319141 TGGTACTATCAGATTCATCTCGTG 57.681 41.667 0.00 0.00 34.22 4.35
326 408 4.621747 GCTGATGAAGTACAGTAGCAGGTT 60.622 45.833 9.50 0.00 39.51 3.50
332 414 3.139077 AGTACAGTAGCAGGTTGTTTGC 58.861 45.455 0.00 0.00 41.83 3.68
342 442 2.485814 CAGGTTGTTTGCCTAGAGCTTC 59.514 50.000 0.00 0.00 44.23 3.86
362 462 1.740380 CGGCAGTCTGGGACACTAATG 60.740 57.143 1.14 0.00 34.60 1.90
383 484 6.661304 ATGCCCTTTGATTTTATCTCATCC 57.339 37.500 0.00 0.00 0.00 3.51
401 502 9.877178 ATCTCATCCCTATATTTGTAAACGATC 57.123 33.333 0.00 0.00 0.00 3.69
405 506 8.721478 CATCCCTATATTTGTAAACGATCAAGG 58.279 37.037 0.00 0.00 0.00 3.61
406 507 8.025270 TCCCTATATTTGTAAACGATCAAGGA 57.975 34.615 0.00 0.00 0.00 3.36
407 508 7.929785 TCCCTATATTTGTAAACGATCAAGGAC 59.070 37.037 0.00 0.00 0.00 3.85
421 522 4.740822 GGACAGGCCCGGCACAAT 62.741 66.667 12.58 0.00 0.00 2.71
429 530 3.443045 CCGGCACAATGGTGGAGC 61.443 66.667 1.53 0.00 45.38 4.70
455 556 1.517242 CACTTGTGCAAGAGGTCCTC 58.483 55.000 17.62 11.31 40.79 3.71
456 557 1.131638 ACTTGTGCAAGAGGTCCTCA 58.868 50.000 21.26 0.00 40.79 3.86
457 558 1.071385 ACTTGTGCAAGAGGTCCTCAG 59.929 52.381 21.26 13.52 40.79 3.35
459 560 0.681733 TGTGCAAGAGGTCCTCAGTC 59.318 55.000 21.26 9.15 32.06 3.51
463 564 1.479709 CAAGAGGTCCTCAGTCCGAT 58.520 55.000 21.26 0.00 32.06 4.18
478 579 2.418983 CCGATACGGCCTCTCTAAAC 57.581 55.000 0.00 0.00 41.17 2.01
483 584 4.554330 CGATACGGCCTCTCTAAACTACAC 60.554 50.000 0.00 0.00 0.00 2.90
484 585 1.823610 ACGGCCTCTCTAAACTACACC 59.176 52.381 0.00 0.00 0.00 4.16
486 587 1.823610 GGCCTCTCTAAACTACACCGT 59.176 52.381 0.00 0.00 0.00 4.83
488 589 2.877335 CCTCTCTAAACTACACCGTGC 58.123 52.381 0.00 0.00 0.00 5.34
489 590 2.230508 CCTCTCTAAACTACACCGTGCA 59.769 50.000 0.00 0.00 0.00 4.57
490 591 3.305813 CCTCTCTAAACTACACCGTGCAA 60.306 47.826 0.00 0.00 0.00 4.08
491 592 4.495422 CTCTCTAAACTACACCGTGCAAT 58.505 43.478 0.00 0.00 0.00 3.56
492 593 4.242475 TCTCTAAACTACACCGTGCAATG 58.758 43.478 0.00 0.00 0.00 2.82
494 595 4.827692 TCTAAACTACACCGTGCAATGAT 58.172 39.130 0.00 0.00 0.00 2.45
496 597 6.399743 TCTAAACTACACCGTGCAATGATAA 58.600 36.000 0.00 0.00 0.00 1.75
497 598 5.545658 AAACTACACCGTGCAATGATAAG 57.454 39.130 0.00 0.00 0.00 1.73
512 613 7.443879 TGCAATGATAAGATTTGCCTCGTATAA 59.556 33.333 4.60 0.00 43.91 0.98
536 637 0.252558 TTCCCAGACCTCACCTACCC 60.253 60.000 0.00 0.00 0.00 3.69
538 639 0.635009 CCCAGACCTCACCTACCCTA 59.365 60.000 0.00 0.00 0.00 3.53
541 642 1.006758 CAGACCTCACCTACCCTACCA 59.993 57.143 0.00 0.00 0.00 3.25
549 650 1.343069 CCTACCCTACCATCCTCTGC 58.657 60.000 0.00 0.00 0.00 4.26
568 669 1.270041 GCCCCTGAATGCAACGAAAAA 60.270 47.619 0.00 0.00 0.00 1.94
569 670 2.403259 CCCCTGAATGCAACGAAAAAC 58.597 47.619 0.00 0.00 0.00 2.43
570 671 2.403259 CCCTGAATGCAACGAAAAACC 58.597 47.619 0.00 0.00 0.00 3.27
571 672 2.050691 CCTGAATGCAACGAAAAACCG 58.949 47.619 0.00 0.00 0.00 4.44
586 687 3.190878 CCGAAGGCAGAATGGTGC 58.809 61.111 0.00 0.00 46.14 5.01
587 688 1.675310 CCGAAGGCAGAATGGTGCA 60.675 57.895 2.23 0.00 46.14 4.57
588 689 1.033746 CCGAAGGCAGAATGGTGCAT 61.034 55.000 0.00 0.00 46.14 3.96
589 690 1.667236 CGAAGGCAGAATGGTGCATA 58.333 50.000 0.00 0.00 45.93 3.14
590 691 1.331756 CGAAGGCAGAATGGTGCATAC 59.668 52.381 0.00 0.00 45.93 2.39
591 692 2.648059 GAAGGCAGAATGGTGCATACT 58.352 47.619 0.00 0.00 45.93 2.12
592 693 2.048444 AGGCAGAATGGTGCATACTG 57.952 50.000 0.00 0.00 45.93 2.74
593 694 1.283029 AGGCAGAATGGTGCATACTGT 59.717 47.619 0.00 0.00 45.93 3.55
594 695 2.094675 GGCAGAATGGTGCATACTGTT 58.905 47.619 0.00 0.00 45.93 3.16
595 696 2.493278 GGCAGAATGGTGCATACTGTTT 59.507 45.455 0.00 0.00 45.93 2.83
596 697 3.056607 GGCAGAATGGTGCATACTGTTTT 60.057 43.478 0.00 0.00 45.93 2.43
597 698 4.168760 GCAGAATGGTGCATACTGTTTTC 58.831 43.478 0.00 0.00 43.41 2.29
598 699 4.082571 GCAGAATGGTGCATACTGTTTTCT 60.083 41.667 0.00 0.00 43.41 2.52
599 700 5.123820 GCAGAATGGTGCATACTGTTTTCTA 59.876 40.000 0.00 0.00 43.41 2.10
600 701 6.676456 GCAGAATGGTGCATACTGTTTTCTAG 60.676 42.308 0.00 0.00 43.41 2.43
601 702 5.355350 AGAATGGTGCATACTGTTTTCTAGC 59.645 40.000 0.00 0.00 0.00 3.42
602 703 4.014569 TGGTGCATACTGTTTTCTAGCA 57.985 40.909 0.00 0.00 0.00 3.49
603 704 4.002982 TGGTGCATACTGTTTTCTAGCAG 58.997 43.478 0.00 0.00 38.58 4.24
604 705 3.181506 GGTGCATACTGTTTTCTAGCAGC 60.182 47.826 0.00 0.00 40.92 5.25
605 706 3.436704 GTGCATACTGTTTTCTAGCAGCA 59.563 43.478 0.00 0.00 36.26 4.41
606 707 4.095483 GTGCATACTGTTTTCTAGCAGCAT 59.905 41.667 0.00 0.00 36.26 3.79
607 708 5.294306 GTGCATACTGTTTTCTAGCAGCATA 59.706 40.000 0.00 0.00 36.26 3.14
608 709 6.017605 GTGCATACTGTTTTCTAGCAGCATAT 60.018 38.462 0.00 0.00 36.26 1.78
609 710 6.017687 TGCATACTGTTTTCTAGCAGCATATG 60.018 38.462 0.00 0.00 36.26 1.78
610 711 6.017605 GCATACTGTTTTCTAGCAGCATATGT 60.018 38.462 4.29 0.00 36.26 2.29
611 712 7.171508 GCATACTGTTTTCTAGCAGCATATGTA 59.828 37.037 4.29 0.00 36.26 2.29
612 713 9.212641 CATACTGTTTTCTAGCAGCATATGTAT 57.787 33.333 4.29 0.00 36.26 2.29
636 737 2.708386 ACTCCTATACGCTTCATCGC 57.292 50.000 0.00 0.00 0.00 4.58
637 738 2.231529 ACTCCTATACGCTTCATCGCT 58.768 47.619 0.00 0.00 0.00 4.93
638 739 2.030717 ACTCCTATACGCTTCATCGCTG 60.031 50.000 0.00 0.00 0.00 5.18
639 740 2.226674 CTCCTATACGCTTCATCGCTGA 59.773 50.000 0.00 0.00 0.00 4.26
640 741 2.031069 TCCTATACGCTTCATCGCTGAC 60.031 50.000 0.00 0.00 0.00 3.51
654 756 1.662608 CTGACGGATGAGATCGGGG 59.337 63.158 0.00 0.00 34.30 5.73
847 1003 2.417719 ATTTATCTCTACCCGGCCCT 57.582 50.000 0.00 0.00 0.00 5.19
865 1021 1.758862 CCTTTTTCTCCCATGGCCATC 59.241 52.381 17.61 0.00 0.00 3.51
903 1059 1.614241 TACTTCCGCCCAGCTTCCTC 61.614 60.000 0.00 0.00 0.00 3.71
929 1085 3.535590 CTCCTCTCCTCTCCCCCATATAT 59.464 52.174 0.00 0.00 0.00 0.86
933 1089 4.699994 TCTCCTCTCCCCCATATATTTCC 58.300 47.826 0.00 0.00 0.00 3.13
978 1149 4.337555 CCTCCTTGCTCCATTGAACATTAG 59.662 45.833 0.00 0.00 0.00 1.73
1104 1275 1.304617 CTTCTGCTTTCCCCTCCCC 59.695 63.158 0.00 0.00 0.00 4.81
1116 1287 2.612251 CTCCCCTCCCCTCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
1140 1311 4.829064 TCGCTTTGCTTATTTTCAGTGT 57.171 36.364 0.00 0.00 0.00 3.55
1141 1312 5.181690 TCGCTTTGCTTATTTTCAGTGTT 57.818 34.783 0.00 0.00 0.00 3.32
1142 1313 5.212194 TCGCTTTGCTTATTTTCAGTGTTC 58.788 37.500 0.00 0.00 0.00 3.18
1143 1314 4.382754 CGCTTTGCTTATTTTCAGTGTTCC 59.617 41.667 0.00 0.00 0.00 3.62
1144 1315 4.382754 GCTTTGCTTATTTTCAGTGTTCCG 59.617 41.667 0.00 0.00 0.00 4.30
1145 1316 5.508200 TTTGCTTATTTTCAGTGTTCCGT 57.492 34.783 0.00 0.00 0.00 4.69
1268 1445 5.987098 AGTATCTGTCGTGGACTACTAGAA 58.013 41.667 0.00 0.00 33.15 2.10
1270 1447 7.055378 AGTATCTGTCGTGGACTACTAGAAAT 58.945 38.462 0.00 0.00 33.15 2.17
1271 1448 5.562506 TCTGTCGTGGACTACTAGAAATG 57.437 43.478 0.00 0.00 33.15 2.32
1272 1449 4.398358 TCTGTCGTGGACTACTAGAAATGG 59.602 45.833 0.00 0.00 33.15 3.16
1301 1482 3.332761 TTTGTAGCAACACAAAGCTCG 57.667 42.857 7.07 0.00 42.08 5.03
1355 1568 1.673168 GCAGCCCTAACCTGAATGAG 58.327 55.000 0.00 0.00 32.03 2.90
1410 1623 1.080093 CGCCGCTTGTCCAACTCTA 60.080 57.895 0.00 0.00 0.00 2.43
1413 1626 1.941325 CCGCTTGTCCAACTCTATCC 58.059 55.000 0.00 0.00 0.00 2.59
1521 1885 5.138125 TCAACCCTGCAATTCAAAGAATC 57.862 39.130 0.00 0.00 0.00 2.52
1524 1888 5.397142 ACCCTGCAATTCAAAGAATCTTC 57.603 39.130 0.00 0.00 0.00 2.87
1525 1889 4.834496 ACCCTGCAATTCAAAGAATCTTCA 59.166 37.500 0.00 0.00 0.00 3.02
1532 1930 9.761504 TGCAATTCAAAGAATCTTCATACAAAA 57.238 25.926 0.00 0.00 0.00 2.44
1588 1986 4.947388 AGCACTTGGTTTAGTCAAAGAACA 59.053 37.500 0.00 0.00 0.00 3.18
1642 2080 6.712547 AGTCCACCTACTTTCTTCAGAATTTG 59.287 38.462 0.00 0.00 33.54 2.32
1647 2085 9.237846 CACCTACTTTCTTCAGAATTTGTTTTC 57.762 33.333 0.00 0.00 33.54 2.29
1648 2086 9.190317 ACCTACTTTCTTCAGAATTTGTTTTCT 57.810 29.630 0.00 0.00 36.38 2.52
1714 2152 3.668447 ACATGGCTCGCTAATCTAATGG 58.332 45.455 0.00 0.00 0.00 3.16
1807 2246 0.961019 TGTTTTCTGATGGCTGTGGC 59.039 50.000 0.00 0.00 37.82 5.01
1812 2251 1.051008 TCTGATGGCTGTGGCGATAT 58.949 50.000 0.00 0.00 37.03 1.63
1823 2262 4.273480 GCTGTGGCGATATTTACTTGTCAT 59.727 41.667 0.00 0.00 0.00 3.06
1860 2306 9.844257 ACTCGTATACATTTAAGTAGTACTCCT 57.156 33.333 2.58 0.00 0.00 3.69
1892 2338 1.074566 CCTTTGCCTCCTCAAACCTCT 59.925 52.381 0.00 0.00 32.99 3.69
1968 2433 7.525526 CGGGATCAGGATAAGTATGAGCTAAAA 60.526 40.741 0.00 0.00 30.33 1.52
2218 2711 3.251729 TGAAGCTCTGCAAACTGATGAAC 59.748 43.478 0.00 0.00 0.00 3.18
2219 2712 1.802960 AGCTCTGCAAACTGATGAACG 59.197 47.619 0.00 0.00 0.00 3.95
2225 2719 2.884012 TGCAAACTGATGAACGGTCAAT 59.116 40.909 7.51 0.00 37.30 2.57
2232 2726 3.637432 TGATGAACGGTCAATTGTTTGC 58.363 40.909 7.51 0.00 37.30 3.68
2240 2734 7.921214 TGAACGGTCAATTGTTTGCTTTAATTA 59.079 29.630 0.00 0.00 32.61 1.40
2294 2791 1.811965 CATGTGAATTTGCAGGACGGA 59.188 47.619 0.00 0.00 0.00 4.69
2354 2851 3.756434 TGGACAAGGATCGAAATGGTTTC 59.244 43.478 0.00 0.00 36.32 2.78
2374 2871 1.630369 CATCTCCCCTGTTGAGGTGAA 59.370 52.381 0.00 0.00 42.40 3.18
2418 2920 3.134458 GTTCAGATAATCCCCAAGCTCG 58.866 50.000 0.00 0.00 0.00 5.03
2593 3095 2.612672 CGTGCTCATGATGAAGAATGCT 59.387 45.455 0.00 0.00 0.00 3.79
2621 3123 5.222631 GCAAGATAACTGGGTGAACAAAAG 58.777 41.667 0.00 0.00 0.00 2.27
2625 3127 8.576442 CAAGATAACTGGGTGAACAAAAGTAAT 58.424 33.333 0.00 0.00 0.00 1.89
2634 3160 6.295067 GGGTGAACAAAAGTAATTATGCTGGT 60.295 38.462 0.00 0.00 0.00 4.00
2640 3166 8.225603 ACAAAAGTAATTATGCTGGTGATAGG 57.774 34.615 0.00 0.00 0.00 2.57
2669 3195 3.331889 ACCACTGGTTCTCAGATTGGATT 59.668 43.478 0.00 0.00 46.18 3.01
2683 3215 3.485463 TTGGATTCACTGTCTCCGTTT 57.515 42.857 0.00 0.00 31.36 3.60
2713 3247 6.160684 TCGCTGCTTGTAGTAGTTATTTTCA 58.839 36.000 0.00 0.00 30.12 2.69
2815 3355 2.422127 CACCACGTTCTTTGGTTCTTGT 59.578 45.455 0.00 0.00 45.62 3.16
2817 3357 3.875134 ACCACGTTCTTTGGTTCTTGTAG 59.125 43.478 0.00 0.00 45.62 2.74
2825 3365 5.876357 TCTTTGGTTCTTGTAGGCTATGTT 58.124 37.500 0.00 0.00 0.00 2.71
2847 3387 9.869757 ATGTTTAGCCACCTTTATGATTTTTAC 57.130 29.630 0.00 0.00 0.00 2.01
2848 3388 8.861086 TGTTTAGCCACCTTTATGATTTTTACA 58.139 29.630 0.00 0.00 0.00 2.41
2851 3391 9.868277 TTAGCCACCTTTATGATTTTTACAATG 57.132 29.630 0.00 0.00 0.00 2.82
2852 3392 7.906327 AGCCACCTTTATGATTTTTACAATGT 58.094 30.769 0.00 0.00 0.00 2.71
2853 3393 9.030452 AGCCACCTTTATGATTTTTACAATGTA 57.970 29.630 0.00 0.00 0.00 2.29
2862 3409 8.635765 ATGATTTTTACAATGTAGTGGTCAGT 57.364 30.769 0.00 0.00 0.00 3.41
2890 3437 8.129211 GTGTACCAAATGAATGGAATTAGCTAC 58.871 37.037 0.00 0.00 43.54 3.58
2891 3438 7.831690 TGTACCAAATGAATGGAATTAGCTACA 59.168 33.333 0.00 0.00 43.54 2.74
2892 3439 7.716799 ACCAAATGAATGGAATTAGCTACAA 57.283 32.000 0.00 0.00 43.54 2.41
2893 3440 7.547227 ACCAAATGAATGGAATTAGCTACAAC 58.453 34.615 0.00 0.00 43.54 3.32
2894 3441 7.178274 ACCAAATGAATGGAATTAGCTACAACA 59.822 33.333 0.00 0.00 43.54 3.33
2895 3442 7.489113 CCAAATGAATGGAATTAGCTACAACAC 59.511 37.037 0.00 0.00 43.54 3.32
2896 3443 7.701539 AATGAATGGAATTAGCTACAACACA 57.298 32.000 0.00 0.00 36.07 3.72
2897 3444 6.741992 TGAATGGAATTAGCTACAACACAG 57.258 37.500 0.00 0.00 36.07 3.66
2898 3445 6.237901 TGAATGGAATTAGCTACAACACAGT 58.762 36.000 0.00 0.00 36.07 3.55
2899 3446 6.371548 TGAATGGAATTAGCTACAACACAGTC 59.628 38.462 0.00 0.00 36.07 3.51
2900 3447 4.242475 TGGAATTAGCTACAACACAGTCG 58.758 43.478 0.00 0.00 0.00 4.18
2901 3448 4.243270 GGAATTAGCTACAACACAGTCGT 58.757 43.478 0.00 0.00 0.00 4.34
2902 3449 4.689345 GGAATTAGCTACAACACAGTCGTT 59.311 41.667 0.00 0.00 0.00 3.85
2903 3450 5.178809 GGAATTAGCTACAACACAGTCGTTT 59.821 40.000 0.00 0.00 0.00 3.60
2904 3451 5.591643 ATTAGCTACAACACAGTCGTTTG 57.408 39.130 0.00 0.00 0.00 2.93
2905 3452 2.901249 AGCTACAACACAGTCGTTTGT 58.099 42.857 0.00 0.00 0.00 2.83
2914 3461 4.631133 CACAGTCGTTTGTGTCTATGAC 57.369 45.455 11.98 0.00 42.68 3.06
2915 3462 4.048504 CACAGTCGTTTGTGTCTATGACA 58.951 43.478 11.98 0.00 42.68 3.58
2916 3463 4.506288 CACAGTCGTTTGTGTCTATGACAA 59.494 41.667 11.98 0.00 44.49 3.18
2917 3464 5.177511 CACAGTCGTTTGTGTCTATGACAAT 59.822 40.000 11.98 0.00 44.49 2.71
2918 3465 5.405571 ACAGTCGTTTGTGTCTATGACAATC 59.594 40.000 1.73 0.00 44.49 2.67
2919 3466 5.635280 CAGTCGTTTGTGTCTATGACAATCT 59.365 40.000 1.73 0.00 44.49 2.40
2920 3467 6.806739 CAGTCGTTTGTGTCTATGACAATCTA 59.193 38.462 1.73 0.00 44.49 1.98
2921 3468 6.807230 AGTCGTTTGTGTCTATGACAATCTAC 59.193 38.462 1.73 0.00 44.49 2.59
2922 3469 6.584942 GTCGTTTGTGTCTATGACAATCTACA 59.415 38.462 1.73 0.00 44.49 2.74
2923 3470 7.115805 GTCGTTTGTGTCTATGACAATCTACAA 59.884 37.037 1.73 0.21 44.49 2.41
2924 3471 7.115805 TCGTTTGTGTCTATGACAATCTACAAC 59.884 37.037 1.73 0.37 44.49 3.32
2925 3472 7.095816 CGTTTGTGTCTATGACAATCTACAACA 60.096 37.037 1.73 0.00 44.49 3.33
2926 3473 7.652300 TTGTGTCTATGACAATCTACAACAC 57.348 36.000 1.73 0.00 44.49 3.32
2927 3474 6.754193 TGTGTCTATGACAATCTACAACACA 58.246 36.000 1.73 0.00 44.49 3.72
2928 3475 6.868339 TGTGTCTATGACAATCTACAACACAG 59.132 38.462 1.73 0.00 44.49 3.66
2929 3476 6.868864 GTGTCTATGACAATCTACAACACAGT 59.131 38.462 1.73 0.00 44.49 3.55
2930 3477 7.062371 GTGTCTATGACAATCTACAACACAGTC 59.938 40.741 1.73 0.00 44.49 3.51
2931 3478 6.251589 GTCTATGACAATCTACAACACAGTCG 59.748 42.308 0.00 0.00 32.09 4.18
2932 3479 4.316205 TGACAATCTACAACACAGTCGT 57.684 40.909 0.00 0.00 0.00 4.34
2933 3480 4.689071 TGACAATCTACAACACAGTCGTT 58.311 39.130 0.00 0.00 0.00 3.85
2934 3481 5.113383 TGACAATCTACAACACAGTCGTTT 58.887 37.500 0.00 0.00 0.00 3.60
2935 3482 5.006261 TGACAATCTACAACACAGTCGTTTG 59.994 40.000 0.00 0.00 0.00 2.93
2936 3483 4.873827 ACAATCTACAACACAGTCGTTTGT 59.126 37.500 0.00 0.00 0.00 2.83
2937 3484 6.044046 ACAATCTACAACACAGTCGTTTGTA 58.956 36.000 0.00 0.00 30.27 2.41
2938 3485 6.535865 ACAATCTACAACACAGTCGTTTGTAA 59.464 34.615 0.00 0.00 30.27 2.41
2939 3486 6.764877 ATCTACAACACAGTCGTTTGTAAG 57.235 37.500 0.00 0.00 0.00 2.34
2940 3487 5.893687 TCTACAACACAGTCGTTTGTAAGA 58.106 37.500 0.00 0.00 0.00 2.10
2941 3488 6.509656 TCTACAACACAGTCGTTTGTAAGAT 58.490 36.000 0.00 0.00 0.00 2.40
2942 3489 5.403897 ACAACACAGTCGTTTGTAAGATG 57.596 39.130 0.00 0.00 0.00 2.90
2943 3490 5.113383 ACAACACAGTCGTTTGTAAGATGA 58.887 37.500 0.00 0.00 0.00 2.92
2944 3491 5.758296 ACAACACAGTCGTTTGTAAGATGAT 59.242 36.000 0.00 0.00 0.00 2.45
2945 3492 6.926826 ACAACACAGTCGTTTGTAAGATGATA 59.073 34.615 0.00 0.00 0.00 2.15
2946 3493 7.439955 ACAACACAGTCGTTTGTAAGATGATAA 59.560 33.333 0.00 0.00 0.00 1.75
2947 3494 7.582435 ACACAGTCGTTTGTAAGATGATAAG 57.418 36.000 0.00 0.00 0.00 1.73
2948 3495 7.152645 ACACAGTCGTTTGTAAGATGATAAGT 58.847 34.615 0.00 0.00 0.00 2.24
2949 3496 7.656137 ACACAGTCGTTTGTAAGATGATAAGTT 59.344 33.333 0.00 0.00 0.00 2.66
2950 3497 8.495949 CACAGTCGTTTGTAAGATGATAAGTTT 58.504 33.333 0.00 0.00 0.00 2.66
2951 3498 8.495949 ACAGTCGTTTGTAAGATGATAAGTTTG 58.504 33.333 0.00 0.00 0.00 2.93
2952 3499 7.957484 CAGTCGTTTGTAAGATGATAAGTTTGG 59.043 37.037 0.00 0.00 0.00 3.28
2953 3500 6.741358 GTCGTTTGTAAGATGATAAGTTTGGC 59.259 38.462 0.00 0.00 0.00 4.52
2954 3501 6.428465 TCGTTTGTAAGATGATAAGTTTGGCA 59.572 34.615 0.00 0.00 0.00 4.92
2955 3502 6.742718 CGTTTGTAAGATGATAAGTTTGGCAG 59.257 38.462 0.00 0.00 0.00 4.85
2956 3503 6.757897 TTGTAAGATGATAAGTTTGGCAGG 57.242 37.500 0.00 0.00 0.00 4.85
2957 3504 4.640201 TGTAAGATGATAAGTTTGGCAGGC 59.360 41.667 0.00 0.00 0.00 4.85
2958 3505 3.370840 AGATGATAAGTTTGGCAGGCA 57.629 42.857 0.00 0.00 0.00 4.75
2959 3506 3.700538 AGATGATAAGTTTGGCAGGCAA 58.299 40.909 5.03 5.03 0.00 4.52
2960 3507 4.088634 AGATGATAAGTTTGGCAGGCAAA 58.911 39.130 17.86 17.86 0.00 3.68
2961 3508 3.940209 TGATAAGTTTGGCAGGCAAAG 57.060 42.857 21.87 0.00 0.00 2.77
2962 3509 2.029110 TGATAAGTTTGGCAGGCAAAGC 60.029 45.455 21.87 15.85 0.00 3.51
2963 3510 0.313672 TAAGTTTGGCAGGCAAAGCG 59.686 50.000 21.87 0.00 0.00 4.68
2964 3511 1.391157 AAGTTTGGCAGGCAAAGCGA 61.391 50.000 21.87 0.00 0.00 4.93
2965 3512 1.372128 GTTTGGCAGGCAAAGCGAG 60.372 57.895 21.87 0.00 0.00 5.03
2966 3513 2.563798 TTTGGCAGGCAAAGCGAGG 61.564 57.895 17.86 0.00 0.00 4.63
2969 3516 3.673484 GCAGGCAAAGCGAGGCAA 61.673 61.111 0.00 0.00 0.00 4.52
2970 3517 2.256461 CAGGCAAAGCGAGGCAAC 59.744 61.111 0.00 0.00 0.00 4.17
2986 3940 1.439679 CAACTCTACAAGGCGAACCC 58.560 55.000 0.00 0.00 36.11 4.11
2998 3952 1.025113 GCGAACCCTTACTTCTGCCC 61.025 60.000 0.00 0.00 0.00 5.36
2999 3953 0.613777 CGAACCCTTACTTCTGCCCT 59.386 55.000 0.00 0.00 0.00 5.19
3000 3954 1.829222 CGAACCCTTACTTCTGCCCTA 59.171 52.381 0.00 0.00 0.00 3.53
3001 3955 2.159085 CGAACCCTTACTTCTGCCCTAG 60.159 54.545 0.00 0.00 0.00 3.02
3002 3956 2.942604 ACCCTTACTTCTGCCCTAGA 57.057 50.000 0.00 0.00 0.00 2.43
3003 3957 3.423058 ACCCTTACTTCTGCCCTAGAT 57.577 47.619 0.00 0.00 34.80 1.98
3004 3958 3.041946 ACCCTTACTTCTGCCCTAGATG 58.958 50.000 0.00 0.00 34.80 2.90
3005 3959 3.309296 CCCTTACTTCTGCCCTAGATGA 58.691 50.000 0.00 0.00 34.80 2.92
3006 3960 3.070302 CCCTTACTTCTGCCCTAGATGAC 59.930 52.174 0.00 0.00 34.80 3.06
3007 3961 3.070302 CCTTACTTCTGCCCTAGATGACC 59.930 52.174 0.00 0.00 34.80 4.02
3008 3962 1.501582 ACTTCTGCCCTAGATGACCC 58.498 55.000 0.00 0.00 34.80 4.46
3009 3963 0.390860 CTTCTGCCCTAGATGACCCG 59.609 60.000 0.00 0.00 34.80 5.28
3010 3964 0.032515 TTCTGCCCTAGATGACCCGA 60.033 55.000 0.00 0.00 34.80 5.14
3011 3965 0.755698 TCTGCCCTAGATGACCCGAC 60.756 60.000 0.00 0.00 0.00 4.79
3012 3966 1.001120 TGCCCTAGATGACCCGACA 59.999 57.895 0.00 0.00 0.00 4.35
3013 3967 1.043116 TGCCCTAGATGACCCGACAG 61.043 60.000 0.00 0.00 0.00 3.51
3014 3968 1.043673 GCCCTAGATGACCCGACAGT 61.044 60.000 0.00 0.00 0.00 3.55
3015 3969 1.033574 CCCTAGATGACCCGACAGTC 58.966 60.000 0.00 0.00 37.28 3.51
3016 3970 1.033574 CCTAGATGACCCGACAGTCC 58.966 60.000 0.00 0.00 35.83 3.85
3017 3971 0.663688 CTAGATGACCCGACAGTCCG 59.336 60.000 0.00 0.00 35.83 4.79
3024 3978 4.778415 CCGACAGTCCGGCACTCG 62.778 72.222 0.00 2.86 43.25 4.18
3035 3989 2.202756 GCACTCGCCGGACTAAGG 60.203 66.667 5.05 0.00 0.00 2.69
3036 3990 2.707849 GCACTCGCCGGACTAAGGA 61.708 63.158 5.05 0.00 0.00 3.36
3037 3991 1.433879 CACTCGCCGGACTAAGGAG 59.566 63.158 5.05 3.52 0.00 3.69
3038 3992 1.753463 ACTCGCCGGACTAAGGAGG 60.753 63.158 5.05 0.00 0.00 4.30
3039 3993 2.441532 TCGCCGGACTAAGGAGGG 60.442 66.667 5.05 0.00 0.00 4.30
3040 3994 3.537874 CGCCGGACTAAGGAGGGG 61.538 72.222 5.05 0.00 0.00 4.79
3041 3995 3.862991 GCCGGACTAAGGAGGGGC 61.863 72.222 5.05 0.00 32.68 5.80
3042 3996 2.365105 CCGGACTAAGGAGGGGCA 60.365 66.667 0.00 0.00 0.00 5.36
3043 3997 1.993391 CCGGACTAAGGAGGGGCAA 60.993 63.158 0.00 0.00 0.00 4.52
3044 3998 1.522569 CGGACTAAGGAGGGGCAAG 59.477 63.158 0.00 0.00 0.00 4.01
3045 3999 1.915983 GGACTAAGGAGGGGCAAGG 59.084 63.158 0.00 0.00 0.00 3.61
3046 4000 1.636769 GGACTAAGGAGGGGCAAGGG 61.637 65.000 0.00 0.00 0.00 3.95
3047 4001 1.619669 ACTAAGGAGGGGCAAGGGG 60.620 63.158 0.00 0.00 0.00 4.79
3048 4002 1.307866 CTAAGGAGGGGCAAGGGGA 60.308 63.158 0.00 0.00 0.00 4.81
3049 4003 1.307866 TAAGGAGGGGCAAGGGGAG 60.308 63.158 0.00 0.00 0.00 4.30
3050 4004 2.857998 TAAGGAGGGGCAAGGGGAGG 62.858 65.000 0.00 0.00 0.00 4.30
3056 4010 3.424105 GGCAAGGGGAGGCCTGAT 61.424 66.667 12.00 0.00 46.74 2.90
3057 4011 2.194326 GCAAGGGGAGGCCTGATC 59.806 66.667 12.00 0.00 0.00 2.92
3058 4012 2.381941 GCAAGGGGAGGCCTGATCT 61.382 63.158 12.00 0.22 0.00 2.75
3059 4013 1.530771 CAAGGGGAGGCCTGATCTG 59.469 63.158 12.00 0.00 0.00 2.90
3060 4014 1.695597 AAGGGGAGGCCTGATCTGG 60.696 63.158 12.00 14.07 0.00 3.86
3061 4015 2.367512 GGGGAGGCCTGATCTGGT 60.368 66.667 12.00 1.05 0.00 4.00
3062 4016 1.074471 GGGGAGGCCTGATCTGGTA 60.074 63.158 12.00 0.00 0.00 3.25
3063 4017 1.124477 GGGGAGGCCTGATCTGGTAG 61.124 65.000 12.00 0.00 0.00 3.18
3064 4018 1.751563 GGAGGCCTGATCTGGTAGC 59.248 63.158 12.00 8.81 0.00 3.58
3065 4019 1.751563 GAGGCCTGATCTGGTAGCC 59.248 63.158 12.00 13.81 44.20 3.93
3066 4020 2.423446 GGCCTGATCTGGTAGCCG 59.577 66.667 18.82 0.00 33.18 5.52
3067 4021 2.134287 GGCCTGATCTGGTAGCCGA 61.134 63.158 18.82 0.00 33.18 5.54
3068 4022 1.365633 GCCTGATCTGGTAGCCGAG 59.634 63.158 18.82 0.00 0.00 4.63
3069 4023 1.395826 GCCTGATCTGGTAGCCGAGT 61.396 60.000 18.82 0.00 0.00 4.18
3070 4024 0.387202 CCTGATCTGGTAGCCGAGTG 59.613 60.000 10.40 0.00 0.00 3.51
3071 4025 0.249238 CTGATCTGGTAGCCGAGTGC 60.249 60.000 0.00 0.00 41.71 4.40
3072 4026 0.970427 TGATCTGGTAGCCGAGTGCA 60.970 55.000 0.00 0.00 44.83 4.57
3073 4027 0.175760 GATCTGGTAGCCGAGTGCAA 59.824 55.000 0.00 0.00 44.83 4.08
3074 4028 0.613260 ATCTGGTAGCCGAGTGCAAA 59.387 50.000 0.00 0.00 44.83 3.68
3075 4029 0.037326 TCTGGTAGCCGAGTGCAAAG 60.037 55.000 0.00 0.00 44.83 2.77
3076 4030 1.639298 CTGGTAGCCGAGTGCAAAGC 61.639 60.000 0.00 0.00 44.83 3.51
3077 4031 2.740714 GGTAGCCGAGTGCAAAGCG 61.741 63.158 0.00 0.00 44.83 4.68
3086 4040 2.033911 TGCAAAGCGGATGCCTGA 59.966 55.556 8.57 0.00 43.16 3.86
3095 4049 2.606587 GGATGCCTGAGGTGGTGGT 61.607 63.158 0.00 0.00 0.00 4.16
3114 4076 5.048434 GGTGGTTTGAGAAAGAAATGAGGAG 60.048 44.000 0.00 0.00 0.00 3.69
3117 4079 5.010012 GGTTTGAGAAAGAAATGAGGAGCAA 59.990 40.000 0.00 0.00 0.00 3.91
3146 4108 2.034879 CATCCAGCGGTCCACACAC 61.035 63.158 0.00 0.00 0.00 3.82
3157 4119 3.740115 GGTCCACACACACTCTTATGTT 58.260 45.455 0.00 0.00 0.00 2.71
3161 4123 6.261381 GGTCCACACACACTCTTATGTTTTTA 59.739 38.462 0.00 0.00 0.00 1.52
3162 4124 7.201750 GGTCCACACACACTCTTATGTTTTTAA 60.202 37.037 0.00 0.00 0.00 1.52
3163 4125 7.855904 GTCCACACACACTCTTATGTTTTTAAG 59.144 37.037 0.00 0.00 0.00 1.85
3164 4126 7.771361 TCCACACACACTCTTATGTTTTTAAGA 59.229 33.333 0.00 0.00 36.18 2.10
3165 4127 8.402472 CCACACACACTCTTATGTTTTTAAGAA 58.598 33.333 0.00 0.00 37.66 2.52
3166 4128 9.781834 CACACACACTCTTATGTTTTTAAGAAA 57.218 29.630 0.00 0.00 37.66 2.52
3200 4269 6.920758 CAGACACTCCCTAAAAGAATCTATCG 59.079 42.308 0.00 0.00 0.00 2.92
3214 4283 8.553459 AAGAATCTATCGTGTCAATTTCAGTT 57.447 30.769 0.00 0.00 0.00 3.16
3227 4296 6.357240 GTCAATTTCAGTTCTTACGCTTGAAC 59.643 38.462 6.84 6.84 41.84 3.18
3228 4297 6.037720 TCAATTTCAGTTCTTACGCTTGAACA 59.962 34.615 14.41 0.00 43.38 3.18
3235 4304 6.147164 CAGTTCTTACGCTTGAACATTTCCTA 59.853 38.462 14.41 0.00 43.38 2.94
3261 4345 1.317431 TTGCCATCATGTGCTCCAGC 61.317 55.000 0.00 0.00 42.50 4.85
3310 4398 5.808042 AATCATGAGAAATCTGAACACCG 57.192 39.130 0.09 0.00 0.00 4.94
3431 4520 2.830923 CCATCCTTATTGGCACCACAAA 59.169 45.455 0.00 0.00 33.48 2.83
3473 4562 2.863137 GCAACACTGCTAGCAGATACTC 59.137 50.000 43.42 26.41 46.30 2.59
3474 4563 3.452474 CAACACTGCTAGCAGATACTCC 58.548 50.000 43.42 1.27 46.30 3.85
3475 4564 2.035632 ACACTGCTAGCAGATACTCCC 58.964 52.381 43.42 0.48 46.30 4.30
3476 4565 2.315176 CACTGCTAGCAGATACTCCCT 58.685 52.381 43.42 21.11 46.30 4.20
3477 4566 2.295909 CACTGCTAGCAGATACTCCCTC 59.704 54.545 43.42 0.00 46.30 4.30
3478 4567 1.892474 CTGCTAGCAGATACTCCCTCC 59.108 57.143 36.47 0.00 46.30 4.30
3479 4568 0.885196 GCTAGCAGATACTCCCTCCG 59.115 60.000 10.63 0.00 0.00 4.63
3480 4569 1.820090 GCTAGCAGATACTCCCTCCGT 60.820 57.143 10.63 0.00 0.00 4.69
3481 4570 2.156098 CTAGCAGATACTCCCTCCGTC 58.844 57.143 0.00 0.00 0.00 4.79
3482 4571 0.468400 AGCAGATACTCCCTCCGTCC 60.468 60.000 0.00 0.00 0.00 4.79
3483 4572 1.797211 GCAGATACTCCCTCCGTCCG 61.797 65.000 0.00 0.00 0.00 4.79
3484 4573 1.150992 AGATACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
3485 4574 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
3486 4575 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
3487 4576 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3488 4577 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3489 4578 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3490 4579 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3491 4580 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3492 4581 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3493 4582 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3494 4583 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3495 4584 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3496 4585 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3497 4586 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3498 4587 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3499 4588 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3500 4589 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3501 4590 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3502 4591 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3503 4592 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3504 4593 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3505 4594 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3506 4595 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3507 4596 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3508 4597 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3515 4604 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
3516 4605 9.362539 CTTGTCATCAAAATGGATAAAAAGAGG 57.637 33.333 0.00 0.00 33.42 3.69
3517 4606 8.421249 TGTCATCAAAATGGATAAAAAGAGGT 57.579 30.769 0.00 0.00 33.42 3.85
3518 4607 8.306038 TGTCATCAAAATGGATAAAAAGAGGTG 58.694 33.333 0.00 0.00 33.42 4.00
3519 4608 8.306761 GTCATCAAAATGGATAAAAAGAGGTGT 58.693 33.333 0.00 0.00 33.42 4.16
3520 4609 9.527157 TCATCAAAATGGATAAAAAGAGGTGTA 57.473 29.630 0.00 0.00 33.42 2.90
3523 4612 9.753674 TCAAAATGGATAAAAAGAGGTGTATCT 57.246 29.630 0.00 0.00 0.00 1.98
3529 4618 9.268282 TGGATAAAAAGAGGTGTATCTAGAACT 57.732 33.333 0.00 0.00 0.00 3.01
3570 4659 8.827832 ACATCCCTTTTTATTCATCTTGATGA 57.172 30.769 9.02 9.02 32.39 2.92
3571 4660 8.689972 ACATCCCTTTTTATTCATCTTGATGAC 58.310 33.333 12.28 0.00 32.39 3.06
3572 4661 8.689061 CATCCCTTTTTATTCATCTTGATGACA 58.311 33.333 12.28 5.64 0.00 3.58
3573 4662 8.648698 TCCCTTTTTATTCATCTTGATGACAA 57.351 30.769 12.28 7.53 34.65 3.18
3585 4674 5.470845 CTTGATGACAAGTATTTCCGGAC 57.529 43.478 1.83 0.00 45.73 4.79
3586 4675 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3587 4676 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3588 4677 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3589 4678 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3590 4679 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3591 4680 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3592 4681 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3593 4682 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3594 4683 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3595 4684 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3596 4685 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3597 4686 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
3598 4687 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
3599 4688 0.110104 CCGGACGGAGGGAGTACTAT 59.890 60.000 4.40 0.00 37.50 2.12
3600 4689 1.478288 CCGGACGGAGGGAGTACTATT 60.478 57.143 4.40 0.00 37.50 1.73
3601 4690 2.224621 CCGGACGGAGGGAGTACTATTA 60.225 54.545 4.40 0.00 37.50 0.98
3602 4691 3.560882 CCGGACGGAGGGAGTACTATTAT 60.561 52.174 4.40 0.00 37.50 1.28
3603 4692 3.439476 CGGACGGAGGGAGTACTATTATG 59.561 52.174 0.00 0.00 0.00 1.90
3604 4693 3.193056 GGACGGAGGGAGTACTATTATGC 59.807 52.174 0.00 0.00 0.00 3.14
3605 4694 3.825014 GACGGAGGGAGTACTATTATGCA 59.175 47.826 0.00 0.00 0.00 3.96
3606 4695 3.827302 ACGGAGGGAGTACTATTATGCAG 59.173 47.826 0.00 0.00 0.00 4.41
3607 4696 3.827302 CGGAGGGAGTACTATTATGCAGT 59.173 47.826 0.00 0.00 0.00 4.40
3608 4697 5.008331 CGGAGGGAGTACTATTATGCAGTA 58.992 45.833 0.00 0.00 0.00 2.74
3609 4698 5.106237 CGGAGGGAGTACTATTATGCAGTAC 60.106 48.000 0.00 5.32 45.74 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.518493 TGGTAACAGGTGTACTTGAACTTAG 58.482 40.000 0.88 0.00 46.17 2.18
1 2 6.482898 TGGTAACAGGTGTACTTGAACTTA 57.517 37.500 0.88 0.00 46.17 2.24
2 3 5.362105 TGGTAACAGGTGTACTTGAACTT 57.638 39.130 0.88 0.00 46.17 2.66
33 34 4.260011 GCAGCTGCGACTTAGAAAAGTATC 60.260 45.833 25.23 0.00 46.09 2.24
34 35 3.619038 GCAGCTGCGACTTAGAAAAGTAT 59.381 43.478 25.23 0.00 46.09 2.12
35 36 2.993899 GCAGCTGCGACTTAGAAAAGTA 59.006 45.455 25.23 0.00 46.09 2.24
50 51 1.035139 AACTTTGAAGTGGGCAGCTG 58.965 50.000 10.11 10.11 39.66 4.24
133 134 2.815647 GCAGCTACGCACCTGGAC 60.816 66.667 0.00 0.00 0.00 4.02
165 166 0.593128 CTGCAGCTACGCACCTTTTT 59.407 50.000 0.00 0.00 36.86 1.94
166 167 0.535102 ACTGCAGCTACGCACCTTTT 60.535 50.000 15.27 0.00 36.86 2.27
167 168 0.320374 TACTGCAGCTACGCACCTTT 59.680 50.000 15.27 0.00 36.86 3.11
168 169 0.108615 CTACTGCAGCTACGCACCTT 60.109 55.000 15.27 0.00 36.86 3.50
169 170 0.965866 TCTACTGCAGCTACGCACCT 60.966 55.000 15.27 0.00 36.86 4.00
170 171 0.103208 ATCTACTGCAGCTACGCACC 59.897 55.000 15.27 0.00 36.86 5.01
171 172 1.202302 TGATCTACTGCAGCTACGCAC 60.202 52.381 15.27 0.32 36.86 5.34
172 173 1.102978 TGATCTACTGCAGCTACGCA 58.897 50.000 15.27 4.24 40.32 5.24
173 174 2.123342 CTTGATCTACTGCAGCTACGC 58.877 52.381 15.27 1.28 0.00 4.42
174 175 2.123342 GCTTGATCTACTGCAGCTACG 58.877 52.381 15.27 0.00 0.00 3.51
175 176 3.122297 CTGCTTGATCTACTGCAGCTAC 58.878 50.000 15.27 1.82 44.72 3.58
176 177 3.449528 CTGCTTGATCTACTGCAGCTA 57.550 47.619 15.27 4.75 44.72 3.32
177 178 2.312722 CTGCTTGATCTACTGCAGCT 57.687 50.000 15.27 3.67 44.72 4.24
180 181 4.646492 TCATCTACTGCTTGATCTACTGCA 59.354 41.667 0.00 0.00 0.00 4.41
189 190 5.431765 GGAAGGAAATCATCTACTGCTTGA 58.568 41.667 0.00 0.00 0.00 3.02
201 202 1.005924 GCTGAAGGGGGAAGGAAATCA 59.994 52.381 0.00 0.00 0.00 2.57
202 203 1.005924 TGCTGAAGGGGGAAGGAAATC 59.994 52.381 0.00 0.00 0.00 2.17
203 204 1.006400 CTGCTGAAGGGGGAAGGAAAT 59.994 52.381 0.00 0.00 0.00 2.17
204 205 0.405585 CTGCTGAAGGGGGAAGGAAA 59.594 55.000 0.00 0.00 0.00 3.13
205 206 0.772124 ACTGCTGAAGGGGGAAGGAA 60.772 55.000 0.00 0.00 0.00 3.36
206 207 0.772124 AACTGCTGAAGGGGGAAGGA 60.772 55.000 0.00 0.00 0.00 3.36
207 208 0.610232 CAACTGCTGAAGGGGGAAGG 60.610 60.000 0.00 0.00 0.00 3.46
220 221 1.459592 CGTGTACAGGTAAGCAACTGC 59.540 52.381 7.41 0.00 38.25 4.40
221 222 1.459592 GCGTGTACAGGTAAGCAACTG 59.540 52.381 16.36 0.00 40.48 3.16
233 260 1.070134 AGGAGAAGCAAAGCGTGTACA 59.930 47.619 0.00 0.00 0.00 2.90
250 277 1.946768 CAAAGTGGCTTCGAAACAGGA 59.053 47.619 0.00 0.00 0.00 3.86
258 285 3.857052 TGATAGTACCAAAGTGGCTTCG 58.143 45.455 0.00 0.00 42.67 3.79
259 286 5.086104 TCTGATAGTACCAAAGTGGCTTC 57.914 43.478 0.00 0.00 42.67 3.86
260 287 5.700402 ATCTGATAGTACCAAAGTGGCTT 57.300 39.130 0.00 0.00 42.67 4.35
274 356 5.853810 CGGTTACACGAGATGAATCTGATAG 59.146 44.000 0.00 0.00 37.25 2.08
275 357 5.278315 CCGGTTACACGAGATGAATCTGATA 60.278 44.000 0.00 0.00 37.25 2.15
292 374 0.392461 TTCATCAGCAGCCCGGTTAC 60.392 55.000 0.00 0.00 0.00 2.50
326 408 3.532896 CCGAAGCTCTAGGCAAACA 57.467 52.632 6.07 0.00 44.79 2.83
332 414 0.102120 CAGACTGCCGAAGCTCTAGG 59.898 60.000 0.00 0.00 40.80 3.02
342 442 0.537188 ATTAGTGTCCCAGACTGCCG 59.463 55.000 0.00 0.00 33.15 5.69
362 462 5.143369 AGGGATGAGATAAAATCAAAGGGC 58.857 41.667 0.00 0.00 0.00 5.19
383 484 8.657074 TGTCCTTGATCGTTTACAAATATAGG 57.343 34.615 0.00 0.00 0.00 2.57
391 492 2.614481 GGCCTGTCCTTGATCGTTTACA 60.614 50.000 0.00 0.00 0.00 2.41
392 493 2.007608 GGCCTGTCCTTGATCGTTTAC 58.992 52.381 0.00 0.00 0.00 2.01
405 506 3.443045 CATTGTGCCGGGCCTGTC 61.443 66.667 17.97 0.00 0.00 3.51
429 530 1.605710 CTCTTGCACAAGTGGGAAGTG 59.394 52.381 10.05 0.00 39.38 3.16
463 564 3.019564 GGTGTAGTTTAGAGAGGCCGTA 58.980 50.000 0.00 0.00 0.00 4.02
478 579 5.991328 AATCTTATCATTGCACGGTGTAG 57.009 39.130 10.24 0.00 0.00 2.74
488 589 9.979270 GATTATACGAGGCAAATCTTATCATTG 57.021 33.333 0.00 0.00 0.00 2.82
489 590 9.950496 AGATTATACGAGGCAAATCTTATCATT 57.050 29.630 0.00 0.00 35.65 2.57
490 591 9.950496 AAGATTATACGAGGCAAATCTTATCAT 57.050 29.630 7.24 0.00 43.41 2.45
491 592 9.778741 AAAGATTATACGAGGCAAATCTTATCA 57.221 29.630 8.98 0.00 44.07 2.15
494 595 9.052759 GGAAAAGATTATACGAGGCAAATCTTA 57.947 33.333 8.98 0.00 44.07 2.10
496 597 6.486993 GGGAAAAGATTATACGAGGCAAATCT 59.513 38.462 0.00 0.00 39.70 2.40
497 598 6.262273 TGGGAAAAGATTATACGAGGCAAATC 59.738 38.462 0.00 0.00 0.00 2.17
512 613 2.637165 AGGTGAGGTCTGGGAAAAGAT 58.363 47.619 0.00 0.00 0.00 2.40
536 637 0.399091 TCAGGGGCAGAGGATGGTAG 60.399 60.000 0.00 0.00 0.00 3.18
538 639 0.625683 ATTCAGGGGCAGAGGATGGT 60.626 55.000 0.00 0.00 0.00 3.55
541 642 1.284111 TGCATTCAGGGGCAGAGGAT 61.284 55.000 0.00 0.00 34.58 3.24
549 650 2.403259 GTTTTTCGTTGCATTCAGGGG 58.597 47.619 0.00 0.00 0.00 4.79
568 669 1.675641 GCACCATTCTGCCTTCGGT 60.676 57.895 0.00 0.00 0.00 4.69
569 670 1.033746 ATGCACCATTCTGCCTTCGG 61.034 55.000 0.00 0.00 36.21 4.30
570 671 1.331756 GTATGCACCATTCTGCCTTCG 59.668 52.381 0.00 0.00 36.21 3.79
571 672 2.357009 CAGTATGCACCATTCTGCCTTC 59.643 50.000 0.00 0.00 33.83 3.46
583 684 3.436704 TGCTGCTAGAAAACAGTATGCAC 59.563 43.478 0.00 0.00 42.53 4.57
584 685 3.673902 TGCTGCTAGAAAACAGTATGCA 58.326 40.909 0.00 0.00 42.53 3.96
585 686 4.889832 ATGCTGCTAGAAAACAGTATGC 57.110 40.909 0.00 0.00 42.53 3.14
586 687 7.488187 ACATATGCTGCTAGAAAACAGTATG 57.512 36.000 1.58 6.57 39.22 2.39
610 711 8.933807 GCGATGAAGCGTATAGGAGTATATATA 58.066 37.037 0.00 0.00 0.00 0.86
611 712 7.662258 AGCGATGAAGCGTATAGGAGTATATAT 59.338 37.037 0.00 0.00 43.00 0.86
612 713 6.990939 AGCGATGAAGCGTATAGGAGTATATA 59.009 38.462 0.00 0.00 43.00 0.86
613 714 5.823570 AGCGATGAAGCGTATAGGAGTATAT 59.176 40.000 0.00 0.00 43.00 0.86
614 715 5.064834 CAGCGATGAAGCGTATAGGAGTATA 59.935 44.000 0.00 0.00 43.00 1.47
615 716 4.011023 AGCGATGAAGCGTATAGGAGTAT 58.989 43.478 0.00 0.00 43.00 2.12
616 717 3.188667 CAGCGATGAAGCGTATAGGAGTA 59.811 47.826 0.00 0.00 43.00 2.59
617 718 2.030717 CAGCGATGAAGCGTATAGGAGT 60.031 50.000 0.00 0.00 43.00 3.85
618 719 2.226674 TCAGCGATGAAGCGTATAGGAG 59.773 50.000 0.00 0.00 43.00 3.69
619 720 2.031069 GTCAGCGATGAAGCGTATAGGA 60.031 50.000 4.22 0.00 43.00 2.94
620 721 2.320367 GTCAGCGATGAAGCGTATAGG 58.680 52.381 4.22 0.00 43.00 2.57
621 722 1.972640 CGTCAGCGATGAAGCGTATAG 59.027 52.381 4.22 0.00 43.00 1.31
628 729 1.066152 TCTCATCCGTCAGCGATGAAG 59.934 52.381 4.22 7.42 41.33 3.02
635 736 1.006805 CCCGATCTCATCCGTCAGC 60.007 63.158 0.00 0.00 0.00 4.26
636 737 1.662608 CCCCGATCTCATCCGTCAG 59.337 63.158 0.00 0.00 0.00 3.51
637 738 2.498941 GCCCCGATCTCATCCGTCA 61.499 63.158 0.00 0.00 0.00 4.35
638 739 0.894184 TAGCCCCGATCTCATCCGTC 60.894 60.000 0.00 0.00 0.00 4.79
639 740 1.153061 TAGCCCCGATCTCATCCGT 59.847 57.895 0.00 0.00 0.00 4.69
640 741 0.896019 AGTAGCCCCGATCTCATCCG 60.896 60.000 0.00 0.00 0.00 4.18
654 756 4.436998 AGCGGACACGGCAGTAGC 62.437 66.667 0.00 0.00 41.36 3.58
690 799 1.880819 CTGCGCTTTCCCTGCCATTT 61.881 55.000 9.73 0.00 0.00 2.32
847 1003 1.473258 CGATGGCCATGGGAGAAAAA 58.527 50.000 26.56 0.00 0.00 1.94
865 1021 2.023414 ATCCTGCAATGCCAATGCCG 62.023 55.000 1.53 0.00 43.16 5.69
891 1047 2.690510 AGAGGGAGGAAGCTGGGC 60.691 66.667 0.00 0.00 0.00 5.36
903 1059 1.541672 GGGAGAGGAGAGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
929 1085 1.611673 GCAGTGGCTAGCAAGAGGAAA 60.612 52.381 18.24 0.00 36.96 3.13
958 1129 4.096984 GGACTAATGTTCAATGGAGCAAGG 59.903 45.833 0.00 0.00 37.80 3.61
1086 1257 1.210885 AGGGGAGGGGAAAGCAGAAG 61.211 60.000 0.00 0.00 0.00 2.85
1104 1275 2.265182 GCGATCGAGGAGAGGGGAG 61.265 68.421 21.57 0.00 0.00 4.30
1116 1287 4.493350 CACTGAAAATAAGCAAAGCGATCG 59.507 41.667 11.69 11.69 0.00 3.69
1140 1311 4.124238 CAACAGAGTAGGAACAAACGGAA 58.876 43.478 0.00 0.00 0.00 4.30
1141 1312 3.133362 ACAACAGAGTAGGAACAAACGGA 59.867 43.478 0.00 0.00 0.00 4.69
1142 1313 3.463944 ACAACAGAGTAGGAACAAACGG 58.536 45.455 0.00 0.00 0.00 4.44
1143 1314 4.785341 GCAACAACAGAGTAGGAACAAACG 60.785 45.833 0.00 0.00 0.00 3.60
1144 1315 4.335594 AGCAACAACAGAGTAGGAACAAAC 59.664 41.667 0.00 0.00 0.00 2.93
1145 1316 4.523083 AGCAACAACAGAGTAGGAACAAA 58.477 39.130 0.00 0.00 0.00 2.83
1226 1403 7.824289 CAGATACTAGAAAAGATGAAACACCCA 59.176 37.037 0.00 0.00 0.00 4.51
1231 1408 8.587950 CACGACAGATACTAGAAAAGATGAAAC 58.412 37.037 0.00 0.00 0.00 2.78
1236 1413 6.603997 AGTCCACGACAGATACTAGAAAAGAT 59.396 38.462 0.00 0.00 34.60 2.40
1268 1445 3.942130 GCTACAAAAGCCTTGTCCATT 57.058 42.857 5.12 0.00 46.25 3.16
1301 1482 2.994578 GAGGAGTTTTTGCGTCTCTACC 59.005 50.000 0.00 0.00 0.00 3.18
1355 1568 1.071699 TGAGCCCGTCCTATTTATGGC 59.928 52.381 0.00 0.00 39.17 4.40
1413 1626 8.220917 AGTCATATACTGCTTGCTCTAGAGCG 62.221 46.154 33.55 23.55 46.94 5.03
1521 1885 6.057321 TGTAGTAGGGGGTTTTGTATGAAG 57.943 41.667 0.00 0.00 0.00 3.02
1524 1888 5.424252 TCTCTGTAGTAGGGGGTTTTGTATG 59.576 44.000 0.00 0.00 0.00 2.39
1525 1889 5.424573 GTCTCTGTAGTAGGGGGTTTTGTAT 59.575 44.000 0.00 0.00 0.00 2.29
1532 1930 1.288335 CAGGTCTCTGTAGTAGGGGGT 59.712 57.143 0.00 0.00 36.30 4.95
1642 2080 4.393371 GGTGGACTGCAGAGATAAGAAAAC 59.607 45.833 23.35 3.62 0.00 2.43
1647 2085 3.957497 AGTAGGTGGACTGCAGAGATAAG 59.043 47.826 23.35 0.00 33.78 1.73
1648 2086 3.982516 AGTAGGTGGACTGCAGAGATAA 58.017 45.455 23.35 0.00 33.78 1.75
1690 2128 6.573434 CCATTAGATTAGCGAGCCATGTATA 58.427 40.000 0.00 0.00 0.00 1.47
1714 2152 7.808381 GTCTAAAAATTACTTGAGGAACTTGGC 59.192 37.037 0.00 0.00 41.55 4.52
1807 2246 9.737427 AGAGAAGTGTATGACAAGTAAATATCG 57.263 33.333 0.00 0.00 0.00 2.92
1812 2251 8.235226 CGAGTAGAGAAGTGTATGACAAGTAAA 58.765 37.037 0.00 0.00 0.00 2.01
1860 2306 6.126507 TGAGGAGGCAAAGGATATGATAAACA 60.127 38.462 0.00 0.00 0.00 2.83
1892 2338 6.644592 CGGTCAAAGATTTTGGCAAAAGATAA 59.355 34.615 27.21 7.60 33.22 1.75
1991 2483 5.472478 CCCAATATCTCACATGTCAATCAGG 59.528 44.000 0.00 0.00 0.00 3.86
2240 2734 7.900782 AGTAACAGCACGTTCAAACTAATAT 57.099 32.000 0.00 0.00 39.14 1.28
2294 2791 3.041627 GAGCTCTTCGTCGGCGTCT 62.042 63.158 10.18 0.00 39.49 4.18
2299 2796 0.243907 TTCCTTGAGCTCTTCGTCGG 59.756 55.000 16.19 6.27 0.00 4.79
2374 2871 2.846206 TGAGAAGAGGGTGCCAACATAT 59.154 45.455 0.00 0.00 0.00 1.78
2418 2920 3.569701 TGAAATTCAGGAGTGCCTCAAAC 59.430 43.478 0.00 0.00 44.80 2.93
2545 3047 1.669440 GTAGTTCACCTGCCCGTCA 59.331 57.895 0.00 0.00 0.00 4.35
2593 3095 0.613260 ACCCAGTTATCTTGCGCTCA 59.387 50.000 9.73 0.00 0.00 4.26
2621 3123 6.288294 TCACACCTATCACCAGCATAATTAC 58.712 40.000 0.00 0.00 0.00 1.89
2625 3127 4.835284 TTCACACCTATCACCAGCATAA 57.165 40.909 0.00 0.00 0.00 1.90
2634 3160 3.137544 AACCAGTGGTTTCACACCTATCA 59.862 43.478 22.30 0.00 44.33 2.15
2640 3166 2.614057 CTGAGAACCAGTGGTTTCACAC 59.386 50.000 28.00 14.99 46.95 3.82
2669 3195 4.084223 GCGAATTTAAAACGGAGACAGTGA 60.084 41.667 15.94 0.00 0.00 3.41
2683 3215 8.712285 ATAACTACTACAAGCAGCGAATTTAA 57.288 30.769 0.00 0.00 0.00 1.52
2713 3247 2.158755 ACACAAGCTTACAGTGGCTTCT 60.159 45.455 16.98 0.38 45.48 2.85
2825 3365 9.868277 CATTGTAAAAATCATAAAGGTGGCTAA 57.132 29.630 0.00 0.00 0.00 3.09
2840 3380 8.134895 CACAACTGACCACTACATTGTAAAAAT 58.865 33.333 0.00 0.00 0.00 1.82
2846 3386 4.150897 ACACAACTGACCACTACATTGT 57.849 40.909 0.00 0.00 0.00 2.71
2847 3387 4.451096 GGTACACAACTGACCACTACATTG 59.549 45.833 0.00 0.00 33.16 2.82
2848 3388 4.101898 TGGTACACAACTGACCACTACATT 59.898 41.667 0.00 0.00 38.34 2.71
2850 3390 3.032459 TGGTACACAACTGACCACTACA 58.968 45.455 0.00 0.00 38.34 2.74
2851 3391 3.738830 TGGTACACAACTGACCACTAC 57.261 47.619 0.00 0.00 38.34 2.73
2852 3392 4.757019 TTTGGTACACAACTGACCACTA 57.243 40.909 0.00 0.00 42.91 2.74
2853 3393 3.637911 TTTGGTACACAACTGACCACT 57.362 42.857 0.00 0.00 42.91 4.00
2862 3409 7.178274 AGCTAATTCCATTCATTTGGTACACAA 59.822 33.333 0.00 0.00 39.29 3.33
2881 3428 5.526111 ACAAACGACTGTGTTGTAGCTAATT 59.474 36.000 0.00 0.00 31.10 1.40
2894 3441 4.316205 TGTCATAGACACAAACGACTGT 57.684 40.909 0.00 0.00 37.67 3.55
2895 3442 5.635280 AGATTGTCATAGACACAAACGACTG 59.365 40.000 0.00 0.00 42.60 3.51
2896 3443 5.784177 AGATTGTCATAGACACAAACGACT 58.216 37.500 0.00 0.00 42.60 4.18
2897 3444 6.584942 TGTAGATTGTCATAGACACAAACGAC 59.415 38.462 0.00 0.00 42.60 4.34
2898 3445 6.683715 TGTAGATTGTCATAGACACAAACGA 58.316 36.000 0.00 0.00 42.60 3.85
2899 3446 6.944557 TGTAGATTGTCATAGACACAAACG 57.055 37.500 0.00 0.00 42.60 3.60
2900 3447 8.009974 GTGTTGTAGATTGTCATAGACACAAAC 58.990 37.037 0.00 0.00 42.60 2.93
2901 3448 7.713073 TGTGTTGTAGATTGTCATAGACACAAA 59.287 33.333 0.00 0.00 42.60 2.83
2902 3449 7.213678 TGTGTTGTAGATTGTCATAGACACAA 58.786 34.615 0.00 0.00 42.60 3.33
2903 3450 6.754193 TGTGTTGTAGATTGTCATAGACACA 58.246 36.000 0.00 0.00 42.60 3.72
2904 3451 6.868864 ACTGTGTTGTAGATTGTCATAGACAC 59.131 38.462 0.00 0.00 42.60 3.67
2905 3452 6.993079 ACTGTGTTGTAGATTGTCATAGACA 58.007 36.000 0.00 0.00 41.09 3.41
2906 3453 6.251589 CGACTGTGTTGTAGATTGTCATAGAC 59.748 42.308 0.00 0.00 0.00 2.59
2907 3454 6.072119 ACGACTGTGTTGTAGATTGTCATAGA 60.072 38.462 0.00 0.00 0.00 1.98
2908 3455 6.093404 ACGACTGTGTTGTAGATTGTCATAG 58.907 40.000 0.00 0.00 0.00 2.23
2909 3456 6.020971 ACGACTGTGTTGTAGATTGTCATA 57.979 37.500 0.00 0.00 0.00 2.15
2910 3457 4.883083 ACGACTGTGTTGTAGATTGTCAT 58.117 39.130 0.00 0.00 0.00 3.06
2911 3458 4.316205 ACGACTGTGTTGTAGATTGTCA 57.684 40.909 0.00 0.00 0.00 3.58
2912 3459 5.006358 ACAAACGACTGTGTTGTAGATTGTC 59.994 40.000 0.00 0.00 35.15 3.18
2913 3460 4.873827 ACAAACGACTGTGTTGTAGATTGT 59.126 37.500 0.00 0.00 35.23 2.71
2914 3461 5.403897 ACAAACGACTGTGTTGTAGATTG 57.596 39.130 0.00 0.00 33.86 2.67
2915 3462 6.982141 TCTTACAAACGACTGTGTTGTAGATT 59.018 34.615 0.00 0.00 31.10 2.40
2916 3463 6.509656 TCTTACAAACGACTGTGTTGTAGAT 58.490 36.000 0.00 0.00 31.10 1.98
2917 3464 5.893687 TCTTACAAACGACTGTGTTGTAGA 58.106 37.500 0.00 6.28 31.10 2.59
2918 3465 6.419710 TCATCTTACAAACGACTGTGTTGTAG 59.580 38.462 0.00 0.00 31.10 2.74
2919 3466 6.274579 TCATCTTACAAACGACTGTGTTGTA 58.725 36.000 0.00 4.91 31.10 2.41
2920 3467 5.113383 TCATCTTACAAACGACTGTGTTGT 58.887 37.500 0.00 6.41 31.10 3.32
2921 3468 5.651172 TCATCTTACAAACGACTGTGTTG 57.349 39.130 0.00 0.00 31.10 3.33
2922 3469 7.656137 ACTTATCATCTTACAAACGACTGTGTT 59.344 33.333 0.00 0.00 0.00 3.32
2923 3470 7.152645 ACTTATCATCTTACAAACGACTGTGT 58.847 34.615 0.00 0.00 0.00 3.72
2924 3471 7.582435 ACTTATCATCTTACAAACGACTGTG 57.418 36.000 0.00 0.00 0.00 3.66
2925 3472 8.495949 CAAACTTATCATCTTACAAACGACTGT 58.504 33.333 0.00 0.00 0.00 3.55
2926 3473 7.957484 CCAAACTTATCATCTTACAAACGACTG 59.043 37.037 0.00 0.00 0.00 3.51
2927 3474 7.360946 GCCAAACTTATCATCTTACAAACGACT 60.361 37.037 0.00 0.00 0.00 4.18
2928 3475 6.741358 GCCAAACTTATCATCTTACAAACGAC 59.259 38.462 0.00 0.00 0.00 4.34
2929 3476 6.428465 TGCCAAACTTATCATCTTACAAACGA 59.572 34.615 0.00 0.00 0.00 3.85
2930 3477 6.607689 TGCCAAACTTATCATCTTACAAACG 58.392 36.000 0.00 0.00 0.00 3.60
2931 3478 7.029563 CCTGCCAAACTTATCATCTTACAAAC 58.970 38.462 0.00 0.00 0.00 2.93
2932 3479 6.350110 GCCTGCCAAACTTATCATCTTACAAA 60.350 38.462 0.00 0.00 0.00 2.83
2933 3480 5.125417 GCCTGCCAAACTTATCATCTTACAA 59.875 40.000 0.00 0.00 0.00 2.41
2934 3481 4.640201 GCCTGCCAAACTTATCATCTTACA 59.360 41.667 0.00 0.00 0.00 2.41
2935 3482 4.640201 TGCCTGCCAAACTTATCATCTTAC 59.360 41.667 0.00 0.00 0.00 2.34
2936 3483 4.854173 TGCCTGCCAAACTTATCATCTTA 58.146 39.130 0.00 0.00 0.00 2.10
2937 3484 3.700538 TGCCTGCCAAACTTATCATCTT 58.299 40.909 0.00 0.00 0.00 2.40
2938 3485 3.370840 TGCCTGCCAAACTTATCATCT 57.629 42.857 0.00 0.00 0.00 2.90
2939 3486 4.427312 CTTTGCCTGCCAAACTTATCATC 58.573 43.478 0.00 0.00 38.46 2.92
2940 3487 3.368739 GCTTTGCCTGCCAAACTTATCAT 60.369 43.478 0.00 0.00 38.46 2.45
2941 3488 2.029110 GCTTTGCCTGCCAAACTTATCA 60.029 45.455 0.00 0.00 38.46 2.15
2942 3489 2.610433 GCTTTGCCTGCCAAACTTATC 58.390 47.619 0.00 0.00 38.46 1.75
2943 3490 1.067635 CGCTTTGCCTGCCAAACTTAT 60.068 47.619 0.00 0.00 38.46 1.73
2944 3491 0.313672 CGCTTTGCCTGCCAAACTTA 59.686 50.000 0.00 0.00 38.46 2.24
2945 3492 1.067916 CGCTTTGCCTGCCAAACTT 59.932 52.632 0.00 0.00 38.46 2.66
2946 3493 1.799258 CTCGCTTTGCCTGCCAAACT 61.799 55.000 0.00 0.00 38.46 2.66
2947 3494 1.372128 CTCGCTTTGCCTGCCAAAC 60.372 57.895 0.00 0.00 38.46 2.93
2948 3495 2.563798 CCTCGCTTTGCCTGCCAAA 61.564 57.895 0.00 0.00 40.97 3.28
2949 3496 2.985282 CCTCGCTTTGCCTGCCAA 60.985 61.111 0.00 0.00 0.00 4.52
2952 3499 3.673484 TTGCCTCGCTTTGCCTGC 61.673 61.111 0.00 0.00 0.00 4.85
2953 3500 2.192608 GAGTTGCCTCGCTTTGCCTG 62.193 60.000 0.00 0.00 0.00 4.85
2954 3501 1.968540 GAGTTGCCTCGCTTTGCCT 60.969 57.895 0.00 0.00 0.00 4.75
2955 3502 0.673644 TAGAGTTGCCTCGCTTTGCC 60.674 55.000 0.00 0.00 42.86 4.52
2956 3503 0.444260 GTAGAGTTGCCTCGCTTTGC 59.556 55.000 0.00 0.00 42.86 3.68
2957 3504 1.795768 TGTAGAGTTGCCTCGCTTTG 58.204 50.000 0.00 0.00 42.86 2.77
2958 3505 2.417719 CTTGTAGAGTTGCCTCGCTTT 58.582 47.619 0.00 0.00 42.86 3.51
2959 3506 1.338200 CCTTGTAGAGTTGCCTCGCTT 60.338 52.381 0.00 0.00 42.86 4.68
2960 3507 0.247736 CCTTGTAGAGTTGCCTCGCT 59.752 55.000 0.00 0.00 42.86 4.93
2961 3508 1.362406 GCCTTGTAGAGTTGCCTCGC 61.362 60.000 0.00 0.00 42.86 5.03
2962 3509 1.078759 CGCCTTGTAGAGTTGCCTCG 61.079 60.000 0.00 0.00 42.86 4.63
2963 3510 0.246635 TCGCCTTGTAGAGTTGCCTC 59.753 55.000 0.00 0.00 38.04 4.70
2964 3511 0.685097 TTCGCCTTGTAGAGTTGCCT 59.315 50.000 0.00 0.00 0.00 4.75
2965 3512 0.796927 GTTCGCCTTGTAGAGTTGCC 59.203 55.000 0.00 0.00 0.00 4.52
2966 3513 0.796927 GGTTCGCCTTGTAGAGTTGC 59.203 55.000 0.00 0.00 0.00 4.17
2967 3514 1.002087 AGGGTTCGCCTTGTAGAGTTG 59.998 52.381 0.00 0.00 37.45 3.16
2968 3515 1.349067 AGGGTTCGCCTTGTAGAGTT 58.651 50.000 0.00 0.00 37.45 3.01
2969 3516 1.349067 AAGGGTTCGCCTTGTAGAGT 58.651 50.000 0.00 0.00 37.45 3.24
2970 3517 2.496470 AGTAAGGGTTCGCCTTGTAGAG 59.504 50.000 3.33 0.00 37.45 2.43
2971 3518 2.532843 AGTAAGGGTTCGCCTTGTAGA 58.467 47.619 3.33 0.00 37.45 2.59
2974 3928 1.697982 AGAAGTAAGGGTTCGCCTTGT 59.302 47.619 3.33 0.00 37.45 3.16
2980 3934 0.613777 AGGGCAGAAGTAAGGGTTCG 59.386 55.000 0.00 0.00 0.00 3.95
2986 3940 3.070302 GGGTCATCTAGGGCAGAAGTAAG 59.930 52.174 0.00 0.00 36.67 2.34
2987 3941 3.039011 GGGTCATCTAGGGCAGAAGTAA 58.961 50.000 0.00 0.00 36.67 2.24
2998 3952 0.663688 CGGACTGTCGGGTCATCTAG 59.336 60.000 7.42 0.00 37.91 2.43
2999 3953 0.750546 CCGGACTGTCGGGTCATCTA 60.751 60.000 22.27 0.00 45.78 1.98
3000 3954 2.052690 CCGGACTGTCGGGTCATCT 61.053 63.158 22.27 0.00 45.78 2.90
3001 3955 2.494918 CCGGACTGTCGGGTCATC 59.505 66.667 22.27 0.00 45.78 2.92
3018 3972 2.202756 CCTTAGTCCGGCGAGTGC 60.203 66.667 9.30 0.00 41.71 4.40
3019 3973 1.433879 CTCCTTAGTCCGGCGAGTG 59.566 63.158 9.30 0.00 0.00 3.51
3020 3974 1.753463 CCTCCTTAGTCCGGCGAGT 60.753 63.158 9.30 0.00 0.00 4.18
3021 3975 2.491022 CCCTCCTTAGTCCGGCGAG 61.491 68.421 9.30 0.00 0.00 5.03
3022 3976 2.441532 CCCTCCTTAGTCCGGCGA 60.442 66.667 9.30 0.00 0.00 5.54
3023 3977 3.537874 CCCCTCCTTAGTCCGGCG 61.538 72.222 0.00 0.00 0.00 6.46
3024 3978 3.862991 GCCCCTCCTTAGTCCGGC 61.863 72.222 0.00 0.00 0.00 6.13
3025 3979 1.972660 CTTGCCCCTCCTTAGTCCGG 61.973 65.000 0.00 0.00 0.00 5.14
3026 3980 1.522569 CTTGCCCCTCCTTAGTCCG 59.477 63.158 0.00 0.00 0.00 4.79
3027 3981 1.636769 CCCTTGCCCCTCCTTAGTCC 61.637 65.000 0.00 0.00 0.00 3.85
3028 3982 1.636769 CCCCTTGCCCCTCCTTAGTC 61.637 65.000 0.00 0.00 0.00 2.59
3029 3983 1.619669 CCCCTTGCCCCTCCTTAGT 60.620 63.158 0.00 0.00 0.00 2.24
3030 3984 1.307866 TCCCCTTGCCCCTCCTTAG 60.308 63.158 0.00 0.00 0.00 2.18
3031 3985 1.307866 CTCCCCTTGCCCCTCCTTA 60.308 63.158 0.00 0.00 0.00 2.69
3032 3986 2.615288 CTCCCCTTGCCCCTCCTT 60.615 66.667 0.00 0.00 0.00 3.36
3033 3987 4.767892 CCTCCCCTTGCCCCTCCT 62.768 72.222 0.00 0.00 0.00 3.69
3039 3993 3.424105 ATCAGGCCTCCCCTTGCC 61.424 66.667 0.00 0.00 43.06 4.52
3040 3994 2.194326 GATCAGGCCTCCCCTTGC 59.806 66.667 0.00 0.00 43.06 4.01
3041 3995 1.530771 CAGATCAGGCCTCCCCTTG 59.469 63.158 0.00 0.00 43.06 3.61
3042 3996 1.695597 CCAGATCAGGCCTCCCCTT 60.696 63.158 0.00 0.00 43.06 3.95
3044 3998 1.074471 TACCAGATCAGGCCTCCCC 60.074 63.158 0.00 0.00 0.00 4.81
3045 3999 1.763546 GCTACCAGATCAGGCCTCCC 61.764 65.000 0.00 0.00 0.00 4.30
3046 4000 1.751563 GCTACCAGATCAGGCCTCC 59.248 63.158 0.00 0.00 0.00 4.30
3047 4001 1.751563 GGCTACCAGATCAGGCCTC 59.248 63.158 0.00 0.00 39.68 4.70
3048 4002 2.136878 CGGCTACCAGATCAGGCCT 61.137 63.158 0.00 0.00 40.52 5.19
3049 4003 2.093537 CTCGGCTACCAGATCAGGCC 62.094 65.000 3.64 0.00 39.43 5.19
3050 4004 1.365633 CTCGGCTACCAGATCAGGC 59.634 63.158 3.64 0.00 0.00 4.85
3051 4005 0.387202 CACTCGGCTACCAGATCAGG 59.613 60.000 1.93 1.93 0.00 3.86
3052 4006 0.249238 GCACTCGGCTACCAGATCAG 60.249 60.000 0.00 0.00 40.25 2.90
3053 4007 0.970427 TGCACTCGGCTACCAGATCA 60.970 55.000 0.00 0.00 45.15 2.92
3054 4008 0.175760 TTGCACTCGGCTACCAGATC 59.824 55.000 0.00 0.00 45.15 2.75
3055 4009 0.613260 TTTGCACTCGGCTACCAGAT 59.387 50.000 0.00 0.00 45.15 2.90
3056 4010 0.037326 CTTTGCACTCGGCTACCAGA 60.037 55.000 0.00 0.00 45.15 3.86
3057 4011 1.639298 GCTTTGCACTCGGCTACCAG 61.639 60.000 0.00 0.00 45.15 4.00
3058 4012 1.671054 GCTTTGCACTCGGCTACCA 60.671 57.895 0.00 0.00 45.15 3.25
3059 4013 2.740714 CGCTTTGCACTCGGCTACC 61.741 63.158 0.00 0.00 45.15 3.18
3060 4014 2.740714 CCGCTTTGCACTCGGCTAC 61.741 63.158 7.42 0.00 45.15 3.58
3061 4015 2.238847 ATCCGCTTTGCACTCGGCTA 62.239 55.000 13.75 1.14 45.15 3.93
3062 4016 3.612247 ATCCGCTTTGCACTCGGCT 62.612 57.895 13.75 3.80 45.15 5.52
3063 4017 3.127533 ATCCGCTTTGCACTCGGC 61.128 61.111 13.75 3.10 42.65 5.54
3064 4018 2.787249 CATCCGCTTTGCACTCGG 59.213 61.111 12.69 12.69 44.16 4.63
3065 4019 2.099062 GCATCCGCTTTGCACTCG 59.901 61.111 0.00 0.00 39.90 4.18
3066 4020 2.042831 AGGCATCCGCTTTGCACTC 61.043 57.895 0.00 0.00 41.95 3.51
3067 4021 2.034687 AGGCATCCGCTTTGCACT 59.965 55.556 0.00 0.00 41.95 4.40
3068 4022 2.180017 CAGGCATCCGCTTTGCAC 59.820 61.111 0.00 0.00 41.95 4.57
3069 4023 2.033911 TCAGGCATCCGCTTTGCA 59.966 55.556 5.03 0.00 41.95 4.08
3070 4024 2.768492 CCTCAGGCATCCGCTTTGC 61.768 63.158 0.00 0.00 39.41 3.68
3071 4025 1.377725 ACCTCAGGCATCCGCTTTG 60.378 57.895 0.00 0.00 38.60 2.77
3072 4026 1.377725 CACCTCAGGCATCCGCTTT 60.378 57.895 0.00 0.00 38.60 3.51
3073 4027 2.270205 CACCTCAGGCATCCGCTT 59.730 61.111 0.00 0.00 38.60 4.68
3074 4028 3.790437 CCACCTCAGGCATCCGCT 61.790 66.667 0.00 0.00 38.60 5.52
3075 4029 4.101448 ACCACCTCAGGCATCCGC 62.101 66.667 0.00 0.00 37.44 5.54
3076 4030 2.124983 CACCACCTCAGGCATCCG 60.125 66.667 0.00 0.00 0.00 4.18
3077 4031 2.142292 AACCACCACCTCAGGCATCC 62.142 60.000 0.00 0.00 0.00 3.51
3078 4032 0.251341 AAACCACCACCTCAGGCATC 60.251 55.000 0.00 0.00 0.00 3.91
3079 4033 0.540365 CAAACCACCACCTCAGGCAT 60.540 55.000 0.00 0.00 0.00 4.40
3080 4034 1.152777 CAAACCACCACCTCAGGCA 60.153 57.895 0.00 0.00 0.00 4.75
3086 4040 3.662759 TTCTTTCTCAAACCACCACCT 57.337 42.857 0.00 0.00 0.00 4.00
3095 4049 6.713762 TTTGCTCCTCATTTCTTTCTCAAA 57.286 33.333 0.00 0.00 0.00 2.69
3125 4087 1.091771 GTGTGGACCGCTGGATGATG 61.092 60.000 6.60 0.00 0.00 3.07
3134 4096 0.032952 TAAGAGTGTGTGTGGACCGC 59.967 55.000 0.00 0.00 0.00 5.68
3165 4127 8.990163 TTTTAGGGAGTGTCTGAGTTATTTTT 57.010 30.769 0.00 0.00 0.00 1.94
3166 4128 8.437575 TCTTTTAGGGAGTGTCTGAGTTATTTT 58.562 33.333 0.00 0.00 0.00 1.82
3167 4129 7.974504 TCTTTTAGGGAGTGTCTGAGTTATTT 58.025 34.615 0.00 0.00 0.00 1.40
3178 4247 6.154706 ACACGATAGATTCTTTTAGGGAGTGT 59.845 38.462 0.00 0.00 41.38 3.55
3181 4250 6.806751 TGACACGATAGATTCTTTTAGGGAG 58.193 40.000 0.00 0.00 41.38 4.30
3200 4269 5.344207 AGCGTAAGAACTGAAATTGACAC 57.656 39.130 0.00 0.00 43.02 3.67
3212 4281 5.358298 AGGAAATGTTCAAGCGTAAGAAC 57.642 39.130 8.42 8.42 43.31 3.01
3214 4283 6.876789 TGAATAGGAAATGTTCAAGCGTAAGA 59.123 34.615 0.00 0.00 36.23 2.10
3227 4296 7.713507 ACATGATGGCAAAATGAATAGGAAATG 59.286 33.333 16.85 0.00 0.00 2.32
3228 4297 7.713507 CACATGATGGCAAAATGAATAGGAAAT 59.286 33.333 16.85 0.00 0.00 2.17
3235 4304 4.439057 GAGCACATGATGGCAAAATGAAT 58.561 39.130 16.85 4.91 0.00 2.57
3374 4463 7.552687 CCTCTTGCCAGATTTGTACATAACTAA 59.447 37.037 0.00 0.00 0.00 2.24
3431 4520 1.611419 CCTGGAGCCCATCATGTGT 59.389 57.895 0.00 0.00 30.82 3.72
3473 4562 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3474 4563 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3475 4564 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3476 4565 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3477 4566 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3478 4567 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3479 4568 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3480 4569 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3481 4570 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3482 4571 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3489 4578 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3490 4579 9.362539 CCTCTTTTTATCCATTTTGATGACAAG 57.637 33.333 0.00 0.00 37.32 3.16
3491 4580 8.869109 ACCTCTTTTTATCCATTTTGATGACAA 58.131 29.630 0.00 0.00 0.00 3.18
3492 4581 8.306038 CACCTCTTTTTATCCATTTTGATGACA 58.694 33.333 0.00 0.00 0.00 3.58
3493 4582 8.306761 ACACCTCTTTTTATCCATTTTGATGAC 58.693 33.333 0.00 0.00 0.00 3.06
3494 4583 8.421249 ACACCTCTTTTTATCCATTTTGATGA 57.579 30.769 0.00 0.00 0.00 2.92
3497 4586 9.753674 AGATACACCTCTTTTTATCCATTTTGA 57.246 29.630 0.00 0.00 0.00 2.69
3503 4592 9.268282 AGTTCTAGATACACCTCTTTTTATCCA 57.732 33.333 0.00 0.00 0.00 3.41
3544 4633 9.919416 TCATCAAGATGAATAAAAAGGGATGTA 57.081 29.630 10.16 0.00 44.14 2.29
3545 4634 8.827832 TCATCAAGATGAATAAAAAGGGATGT 57.172 30.769 10.16 0.00 44.14 3.06
3562 4651 8.994207 CCGTCCGGAAATACTTGTCATCAAGA 62.994 46.154 5.23 0.31 44.37 3.02
3563 4652 6.918800 CCGTCCGGAAATACTTGTCATCAAG 61.919 48.000 5.23 6.44 45.65 3.02
3564 4653 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3565 4654 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3566 4655 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3567 4656 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3568 4657 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3569 4658 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3570 4659 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3571 4660 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3572 4661 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3573 4662 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3574 4663 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3575 4664 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3576 4665 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3577 4666 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3578 4667 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3579 4668 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3580 4669 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
3581 4670 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
3582 4671 3.193056 GCATAATAGTACTCCCTCCGTCC 59.807 52.174 0.00 0.00 0.00 4.79
3583 4672 3.825014 TGCATAATAGTACTCCCTCCGTC 59.175 47.826 0.00 0.00 0.00 4.79
3584 4673 3.827302 CTGCATAATAGTACTCCCTCCGT 59.173 47.826 0.00 0.00 0.00 4.69
3585 4674 3.827302 ACTGCATAATAGTACTCCCTCCG 59.173 47.826 0.00 0.00 0.00 4.63
3586 4675 5.773680 TGTACTGCATAATAGTACTCCCTCC 59.226 44.000 14.21 0.00 46.66 4.30
3587 4676 6.264744 TGTGTACTGCATAATAGTACTCCCTC 59.735 42.308 14.21 3.89 46.66 4.30
3588 4677 6.134055 TGTGTACTGCATAATAGTACTCCCT 58.866 40.000 14.21 0.00 46.66 4.20
3589 4678 6.401047 TGTGTACTGCATAATAGTACTCCC 57.599 41.667 14.21 5.53 46.66 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.