Multiple sequence alignment - TraesCS5D01G391900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G391900 chr5D 100.000 5249 0 0 1 5249 460388163 460393411 0.000000e+00 9694.0
1 TraesCS5D01G391900 chr5D 94.595 185 9 1 4698 4882 215255397 215255214 8.600000e-73 285.0
2 TraesCS5D01G391900 chr5D 95.918 98 3 1 4867 4963 139440915 139441012 1.960000e-34 158.0
3 TraesCS5D01G391900 chr5A 98.391 2299 35 1 2401 4699 580462115 580464411 0.000000e+00 4039.0
4 TraesCS5D01G391900 chr5A 93.688 1204 25 16 788 1987 580459896 580461052 0.000000e+00 1755.0
5 TraesCS5D01G391900 chr5A 90.422 616 36 7 190 803 580459275 580459869 0.000000e+00 789.0
6 TraesCS5D01G391900 chr5A 95.707 396 10 2 4861 5249 580464410 580464805 9.590000e-177 630.0
7 TraesCS5D01G391900 chr5A 92.568 148 5 3 2010 2151 580461732 580461879 1.920000e-49 207.0
8 TraesCS5D01G391900 chr5A 100.000 30 0 0 2225 2254 580461880 580461909 7.340000e-04 56.5
9 TraesCS5D01G391900 chr5B 97.922 2310 41 3 2389 4697 565926046 565928349 0.000000e+00 3993.0
10 TraesCS5D01G391900 chr5B 93.145 1663 65 26 609 2254 565924223 565925853 0.000000e+00 2394.0
11 TraesCS5D01G391900 chr5B 90.693 548 47 2 1 546 565923425 565923970 0.000000e+00 726.0
12 TraesCS5D01G391900 chr5B 97.686 389 8 1 4862 5249 565928351 565928739 0.000000e+00 667.0
13 TraesCS5D01G391900 chr5B 96.032 126 5 0 2256 2381 699386595 699386470 6.890000e-49 206.0
14 TraesCS5D01G391900 chr5B 95.238 105 4 1 4867 4970 166379183 166379079 1.170000e-36 165.0
15 TraesCS5D01G391900 chr5B 97.619 42 1 0 545 586 565924186 565924227 7.290000e-09 73.1
16 TraesCS5D01G391900 chr1D 99.394 165 1 0 4698 4862 458805541 458805377 3.070000e-77 300.0
17 TraesCS5D01G391900 chr3D 97.076 171 5 0 4697 4867 105119305 105119475 6.650000e-74 289.0
18 TraesCS5D01G391900 chr3D 96.045 177 6 1 4691 4866 22383429 22383605 2.390000e-73 287.0
19 TraesCS5D01G391900 chr3D 95.480 177 6 2 4698 4872 556140978 556141154 1.110000e-71 281.0
20 TraesCS5D01G391900 chr3D 96.063 127 5 0 2256 2382 84562731 84562605 1.920000e-49 207.0
21 TraesCS5D01G391900 chr3D 91.509 106 8 1 4860 4964 609983800 609983905 1.520000e-30 145.0
22 TraesCS5D01G391900 chr7D 97.041 169 5 0 4696 4864 312574126 312574294 8.600000e-73 285.0
23 TraesCS5D01G391900 chr3A 95.954 173 7 0 4697 4869 291796841 291796669 1.110000e-71 281.0
24 TraesCS5D01G391900 chr3A 93.269 104 4 3 4868 4968 470095778 470095675 3.270000e-32 150.0
25 TraesCS5D01G391900 chr3A 93.814 97 5 1 4868 4963 12778902 12778806 1.520000e-30 145.0
26 TraesCS5D01G391900 chr6D 95.455 176 5 2 4688 4862 109240491 109240318 1.440000e-70 278.0
27 TraesCS5D01G391900 chr6D 92.593 108 7 1 4859 4965 94768021 94768128 2.530000e-33 154.0
28 TraesCS5D01G391900 chr2B 94.413 179 8 1 4690 4868 134045917 134045741 1.860000e-69 274.0
29 TraesCS5D01G391900 chr4B 96.063 127 4 1 2256 2382 55926026 55925901 6.890000e-49 206.0
30 TraesCS5D01G391900 chr4B 96.721 122 4 0 2256 2377 40784167 40784046 2.480000e-48 204.0
31 TraesCS5D01G391900 chr1A 96.748 123 4 0 2256 2378 574666431 574666553 6.890000e-49 206.0
32 TraesCS5D01G391900 chr1A 95.276 127 6 0 2256 2382 481651096 481650970 8.910000e-48 202.0
33 TraesCS5D01G391900 chr4A 96.032 126 4 1 2256 2381 477881877 477881753 2.480000e-48 204.0
34 TraesCS5D01G391900 chr1B 96.721 122 4 0 2256 2377 277456304 277456425 2.480000e-48 204.0
35 TraesCS5D01G391900 chr4D 94.574 129 6 1 2256 2384 425527691 425527818 1.150000e-46 198.0
36 TraesCS5D01G391900 chr7B 94.845 97 4 1 4868 4963 162120812 162120908 3.270000e-32 150.0
37 TraesCS5D01G391900 chr6A 92.105 38 2 1 2164 2200 611192003 611192040 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G391900 chr5D 460388163 460393411 5248 False 9694.000000 9694 100.000000 1 5249 1 chr5D.!!$F2 5248
1 TraesCS5D01G391900 chr5A 580459275 580464805 5530 False 1246.083333 4039 95.129333 190 5249 6 chr5A.!!$F1 5059
2 TraesCS5D01G391900 chr5B 565923425 565928739 5314 False 1570.620000 3993 95.413000 1 5249 5 chr5B.!!$F1 5248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 881 0.301687 GATGCGTGGACATACTTGCG 59.698 55.000 0.00 0.0 0.00 4.85 F
1893 2185 0.036765 TCCCCGAATGTCCTGTTTCG 60.037 55.000 0.00 0.0 43.21 3.46 F
2259 3217 0.107945 CTCTGCAGCCTTGTACCTCC 60.108 60.000 9.47 0.0 0.00 4.30 F
2264 3222 0.108615 CAGCCTTGTACCTCCGTCTG 60.109 60.000 0.00 0.0 0.00 3.51 F
2265 3223 1.218316 GCCTTGTACCTCCGTCTGG 59.782 63.158 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 3322 0.248949 GCATTCGTACTCCCTCCGTC 60.249 60.000 0.00 0.0 0.00 4.79 R
3078 4220 0.106918 TAAGCACCATTAAGCCCCCG 60.107 55.000 0.00 0.0 0.00 5.73 R
3375 4517 2.035237 TTGGGGGATCGGTATCACGC 62.035 60.000 0.00 0.0 46.13 5.34 R
4017 5159 3.281727 TCAACTTCTGGTGCTTCAAGT 57.718 42.857 0.00 0.0 0.00 3.16 R
4343 5485 2.028130 CTTGCAAGTAAACACCACCCA 58.972 47.619 18.65 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.070656 CCTCCCAAGCCTAATGATGATAAAA 58.929 40.000 0.00 0.00 0.00 1.52
60 61 1.728971 GATGACAAAGACCAGAGCGTG 59.271 52.381 0.00 0.00 0.00 5.34
93 94 4.778534 CATGGATATGGATTGTGGAAGC 57.221 45.455 0.00 0.00 0.00 3.86
109 110 2.084546 GAAGCTTGGGATAAGTTGCGT 58.915 47.619 2.10 0.00 0.00 5.24
122 123 4.680171 AAGTTGCGTGATAAAGGTTAGC 57.320 40.909 0.00 0.00 0.00 3.09
131 132 1.828979 TAAAGGTTAGCCGGCCAAAG 58.171 50.000 26.15 0.00 40.50 2.77
133 134 2.361230 GGTTAGCCGGCCAAAGCT 60.361 61.111 26.15 15.50 43.20 3.74
159 160 1.078143 CCAAGGCTAGTGAGGTGGC 60.078 63.158 0.00 0.00 0.00 5.01
173 174 0.462047 GGTGGCGGATTCGACTCAAT 60.462 55.000 0.00 0.00 46.40 2.57
174 175 0.931005 GTGGCGGATTCGACTCAATC 59.069 55.000 0.00 0.00 46.40 2.67
241 244 2.273449 CGGGCTCCTTGGCAGATT 59.727 61.111 0.00 0.00 43.83 2.40
244 247 0.323725 GGGCTCCTTGGCAGATTTCA 60.324 55.000 0.00 0.00 43.83 2.69
264 267 3.194755 TCAAGTATCACTGGCACATACGT 59.805 43.478 0.00 0.00 38.20 3.57
283 286 2.542205 CGTTGGGCAATACATCATGCAG 60.542 50.000 0.00 0.00 44.32 4.41
284 287 2.689471 GTTGGGCAATACATCATGCAGA 59.311 45.455 0.00 0.00 44.32 4.26
289 292 4.142093 GGGCAATACATCATGCAGAGTTTT 60.142 41.667 0.00 0.00 44.32 2.43
315 318 2.915604 ACATCAAGATGAAGGAGTGGGT 59.084 45.455 16.39 0.00 41.20 4.51
316 319 3.331889 ACATCAAGATGAAGGAGTGGGTT 59.668 43.478 16.39 0.00 41.20 4.11
374 377 1.111277 GTGCCCAGTTTGGTTGTCTT 58.889 50.000 0.00 0.00 35.17 3.01
379 382 3.799917 GCCCAGTTTGGTTGTCTTCATTG 60.800 47.826 0.00 0.00 35.17 2.82
386 389 4.163441 TGGTTGTCTTCATTGTTGGAGA 57.837 40.909 0.00 0.00 34.95 3.71
395 398 4.808414 TCATTGTTGGAGACTCTAGTGG 57.192 45.455 1.74 0.00 0.00 4.00
400 403 2.497675 GTTGGAGACTCTAGTGGCATCA 59.502 50.000 1.74 0.00 0.00 3.07
499 502 7.168905 TGATATATATCGCTAGTCATCCGGAT 58.831 38.462 12.38 12.38 35.48 4.18
511 514 4.081142 AGTCATCCGGATTAATGTGTGACA 60.081 41.667 24.78 0.00 37.71 3.58
586 822 2.203773 GGCCACACAACCCCCATT 60.204 61.111 0.00 0.00 0.00 3.16
587 823 1.841103 GGCCACACAACCCCCATTT 60.841 57.895 0.00 0.00 0.00 2.32
588 824 1.414866 GGCCACACAACCCCCATTTT 61.415 55.000 0.00 0.00 0.00 1.82
589 825 0.472044 GCCACACAACCCCCATTTTT 59.528 50.000 0.00 0.00 0.00 1.94
590 826 1.813477 GCCACACAACCCCCATTTTTG 60.813 52.381 0.00 0.00 0.00 2.44
591 827 1.488393 CCACACAACCCCCATTTTTGT 59.512 47.619 0.00 0.00 33.69 2.83
592 828 2.092699 CCACACAACCCCCATTTTTGTT 60.093 45.455 0.00 0.00 30.98 2.83
593 829 3.134804 CCACACAACCCCCATTTTTGTTA 59.865 43.478 0.00 0.00 30.98 2.41
594 830 4.384208 CCACACAACCCCCATTTTTGTTAA 60.384 41.667 0.00 0.00 30.98 2.01
595 831 4.813697 CACACAACCCCCATTTTTGTTAAG 59.186 41.667 0.00 0.00 30.98 1.85
596 832 4.717280 ACACAACCCCCATTTTTGTTAAGA 59.283 37.500 0.00 0.00 30.98 2.10
597 833 5.368230 ACACAACCCCCATTTTTGTTAAGAT 59.632 36.000 0.00 0.00 30.98 2.40
598 834 5.700373 CACAACCCCCATTTTTGTTAAGATG 59.300 40.000 0.00 0.00 30.98 2.90
599 835 5.221823 ACAACCCCCATTTTTGTTAAGATGG 60.222 40.000 0.00 0.00 42.74 3.51
607 843 8.675705 CCATTTTTGTTAAGATGGGTCTTTTT 57.324 30.769 0.00 0.00 41.92 1.94
608 844 8.773645 CCATTTTTGTTAAGATGGGTCTTTTTC 58.226 33.333 0.00 0.00 41.92 2.29
609 845 9.546428 CATTTTTGTTAAGATGGGTCTTTTTCT 57.454 29.630 0.00 0.00 41.92 2.52
610 846 9.764363 ATTTTTGTTAAGATGGGTCTTTTTCTC 57.236 29.630 0.00 0.00 41.92 2.87
611 847 7.889873 TTTGTTAAGATGGGTCTTTTTCTCA 57.110 32.000 0.00 0.00 41.92 3.27
612 848 8.477419 TTTGTTAAGATGGGTCTTTTTCTCAT 57.523 30.769 0.00 0.00 41.92 2.90
613 849 9.581289 TTTGTTAAGATGGGTCTTTTTCTCATA 57.419 29.630 0.00 0.00 41.92 2.15
614 850 8.561738 TGTTAAGATGGGTCTTTTTCTCATAC 57.438 34.615 0.00 0.00 41.92 2.39
615 851 8.160765 TGTTAAGATGGGTCTTTTTCTCATACA 58.839 33.333 0.00 0.00 41.92 2.29
635 871 1.224039 TCATGGCATGATGCGTGGA 59.776 52.632 25.63 5.43 46.21 4.02
645 881 0.301687 GATGCGTGGACATACTTGCG 59.698 55.000 0.00 0.00 0.00 4.85
648 884 2.092291 CGTGGACATACTTGCGCGT 61.092 57.895 8.43 0.00 0.00 6.01
847 1132 2.723273 GATTTCAATCCAACGGTCCCT 58.277 47.619 0.00 0.00 0.00 4.20
865 1150 3.117963 TCCCTACGGACCACAAAGAAAAA 60.118 43.478 0.00 0.00 31.13 1.94
866 1151 3.252458 CCCTACGGACCACAAAGAAAAAG 59.748 47.826 0.00 0.00 0.00 2.27
868 1153 4.577283 CCTACGGACCACAAAGAAAAAGAA 59.423 41.667 0.00 0.00 0.00 2.52
869 1154 4.632538 ACGGACCACAAAGAAAAAGAAG 57.367 40.909 0.00 0.00 0.00 2.85
870 1155 3.181490 ACGGACCACAAAGAAAAAGAAGC 60.181 43.478 0.00 0.00 0.00 3.86
871 1156 3.181491 CGGACCACAAAGAAAAAGAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
872 1157 4.363138 GGACCACAAAGAAAAAGAAGCAG 58.637 43.478 0.00 0.00 0.00 4.24
891 1176 1.971695 GGGGGAACGAAACAGCCAG 60.972 63.158 0.00 0.00 0.00 4.85
893 1178 1.228154 GGGAACGAAACAGCCAGGT 60.228 57.895 0.00 0.00 0.00 4.00
894 1179 0.822121 GGGAACGAAACAGCCAGGTT 60.822 55.000 0.00 0.00 0.00 3.50
897 1182 1.106944 AACGAAACAGCCAGGTTGGG 61.107 55.000 8.37 0.00 38.19 4.12
898 1183 2.268076 CGAAACAGCCAGGTTGGGG 61.268 63.158 8.37 0.00 38.19 4.96
904 1194 1.351076 CAGCCAGGTTGGGGAAAAAT 58.649 50.000 0.00 0.00 38.19 1.82
971 1261 4.063967 CTAGTCGCCACGCCACCA 62.064 66.667 0.00 0.00 0.00 4.17
1011 1301 1.215655 CGATTCCGATGGACTTCGCC 61.216 60.000 4.92 0.00 37.80 5.54
1494 1784 2.369001 GAGGGGGTCAGGGTAGCT 59.631 66.667 0.00 0.00 0.00 3.32
1611 1901 3.522553 GGACAAGGTCGGTGAATTCTAG 58.477 50.000 7.05 0.00 32.65 2.43
1648 1938 1.004745 ACTATCCTGGGGTGTTGCTTG 59.995 52.381 0.00 0.00 0.00 4.01
1656 1948 1.618343 GGGGTGTTGCTTGCTTACATT 59.382 47.619 4.94 0.00 0.00 2.71
1657 1949 2.823154 GGGGTGTTGCTTGCTTACATTA 59.177 45.455 4.94 0.00 0.00 1.90
1658 1950 3.447229 GGGGTGTTGCTTGCTTACATTAT 59.553 43.478 4.94 0.00 0.00 1.28
1659 1951 4.642885 GGGGTGTTGCTTGCTTACATTATA 59.357 41.667 4.94 0.00 0.00 0.98
1660 1952 5.301805 GGGGTGTTGCTTGCTTACATTATAT 59.698 40.000 4.94 0.00 0.00 0.86
1661 1953 6.488683 GGGGTGTTGCTTGCTTACATTATATA 59.511 38.462 4.94 0.00 0.00 0.86
1662 1954 7.176690 GGGGTGTTGCTTGCTTACATTATATAT 59.823 37.037 0.00 0.00 0.00 0.86
1663 1955 9.226606 GGGTGTTGCTTGCTTACATTATATATA 57.773 33.333 4.94 0.00 0.00 0.86
1722 2014 4.462834 TGTGCAAGCTGTATAGTCAGTAGT 59.537 41.667 0.00 0.00 37.70 2.73
1793 2085 9.844790 CATGTTATATTGCTGAGAAAAGAACAA 57.155 29.630 3.08 0.00 0.00 2.83
1869 2161 4.296621 TCTTACCTTGGCTAAAAGACCC 57.703 45.455 0.00 0.00 0.00 4.46
1893 2185 0.036765 TCCCCGAATGTCCTGTTTCG 60.037 55.000 0.00 0.00 43.21 3.46
2072 3021 9.019656 ACATTGTACATTGTAAATTAAGGCTCA 57.980 29.630 19.17 0.00 0.00 4.26
2073 3022 9.507280 CATTGTACATTGTAAATTAAGGCTCAG 57.493 33.333 9.17 0.00 0.00 3.35
2074 3023 8.630054 TTGTACATTGTAAATTAAGGCTCAGT 57.370 30.769 0.00 0.00 0.00 3.41
2075 3024 8.630054 TGTACATTGTAAATTAAGGCTCAGTT 57.370 30.769 0.00 0.00 0.00 3.16
2077 3026 9.556030 GTACATTGTAAATTAAGGCTCAGTTTC 57.444 33.333 0.00 0.00 0.00 2.78
2129 3084 7.066163 TGTGAGTAATAGCCATGAAATCACAAG 59.934 37.037 8.01 0.00 40.91 3.16
2141 3096 7.596248 CCATGAAATCACAAGAAGTTGGTTAAG 59.404 37.037 0.00 0.00 38.07 1.85
2160 3115 7.122055 TGGTTAAGCATAGGGTAATTGACAAAG 59.878 37.037 2.54 0.00 0.00 2.77
2162 3117 4.536765 AGCATAGGGTAATTGACAAAGGG 58.463 43.478 0.00 0.00 0.00 3.95
2182 3140 3.411446 GGATCATCATAATCCACCGCAA 58.589 45.455 0.00 0.00 42.01 4.85
2211 3169 2.223923 CGCATCCTAAGTAGCTTGCTCT 60.224 50.000 0.00 0.00 31.55 4.09
2221 3179 5.261209 AGTAGCTTGCTCTCTACATTCTG 57.739 43.478 0.00 0.00 38.05 3.02
2254 3212 4.351874 AGTTTTACTCTGCAGCCTTGTA 57.648 40.909 9.47 6.72 0.00 2.41
2255 3213 4.065789 AGTTTTACTCTGCAGCCTTGTAC 58.934 43.478 9.47 3.37 0.00 2.90
2256 3214 2.762535 TTACTCTGCAGCCTTGTACC 57.237 50.000 9.47 0.00 0.00 3.34
2257 3215 1.938585 TACTCTGCAGCCTTGTACCT 58.061 50.000 9.47 0.00 0.00 3.08
2258 3216 0.610687 ACTCTGCAGCCTTGTACCTC 59.389 55.000 9.47 0.00 0.00 3.85
2259 3217 0.107945 CTCTGCAGCCTTGTACCTCC 60.108 60.000 9.47 0.00 0.00 4.30
2260 3218 1.448540 CTGCAGCCTTGTACCTCCG 60.449 63.158 0.00 0.00 0.00 4.63
2261 3219 2.172483 CTGCAGCCTTGTACCTCCGT 62.172 60.000 0.00 0.00 0.00 4.69
2262 3220 1.448013 GCAGCCTTGTACCTCCGTC 60.448 63.158 0.00 0.00 0.00 4.79
2263 3221 1.889530 GCAGCCTTGTACCTCCGTCT 61.890 60.000 0.00 0.00 0.00 4.18
2264 3222 0.108615 CAGCCTTGTACCTCCGTCTG 60.109 60.000 0.00 0.00 0.00 3.51
2265 3223 1.218316 GCCTTGTACCTCCGTCTGG 59.782 63.158 0.00 0.00 0.00 3.86
2266 3224 1.255667 GCCTTGTACCTCCGTCTGGA 61.256 60.000 0.00 0.00 43.88 3.86
2267 3225 1.263356 CCTTGTACCTCCGTCTGGAA 58.737 55.000 0.00 0.00 45.87 3.53
2268 3226 1.621814 CCTTGTACCTCCGTCTGGAAA 59.378 52.381 0.00 0.00 45.87 3.13
2269 3227 2.236395 CCTTGTACCTCCGTCTGGAAAT 59.764 50.000 0.00 0.00 45.87 2.17
2270 3228 3.449737 CCTTGTACCTCCGTCTGGAAATA 59.550 47.826 0.00 0.00 45.87 1.40
2271 3229 4.430908 CTTGTACCTCCGTCTGGAAATAC 58.569 47.826 0.00 0.00 45.87 1.89
2272 3230 3.705051 TGTACCTCCGTCTGGAAATACT 58.295 45.455 0.00 0.00 45.87 2.12
2273 3231 4.091549 TGTACCTCCGTCTGGAAATACTT 58.908 43.478 0.00 0.00 45.87 2.24
2274 3232 3.611766 ACCTCCGTCTGGAAATACTTG 57.388 47.619 0.00 0.00 45.87 3.16
2275 3233 2.904434 ACCTCCGTCTGGAAATACTTGT 59.096 45.455 0.00 0.00 45.87 3.16
2276 3234 3.056035 ACCTCCGTCTGGAAATACTTGTC 60.056 47.826 0.00 0.00 45.87 3.18
2277 3235 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
2278 3236 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
2279 3237 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
2280 3238 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
2281 3239 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
2282 3240 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
2283 3241 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
2284 3242 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
2285 3243 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
2286 3244 8.514594 GTCTGGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
2287 3245 9.076781 TCTGGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
2288 3246 9.865321 CTGGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
2296 3254 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
2297 3255 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
2298 3256 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
2299 3257 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
2300 3258 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
2301 3259 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
2304 3262 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2309 3267 7.667557 TGAATAAAAGGGGATGTATCTAGACG 58.332 38.462 0.00 0.00 0.00 4.18
2310 3268 7.289317 TGAATAAAAGGGGATGTATCTAGACGT 59.711 37.037 0.00 0.00 0.00 4.34
2311 3269 8.716674 AATAAAAGGGGATGTATCTAGACGTA 57.283 34.615 0.00 0.00 0.00 3.57
2312 3270 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
2313 3271 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
2314 3272 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
2315 3273 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
2316 3274 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
2317 3275 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
2318 3276 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
2319 3277 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
2332 3290 9.631452 GACGTATTTTAGTTATAGGTACATCCC 57.369 37.037 0.00 0.00 36.75 3.85
2333 3291 9.372189 ACGTATTTTAGTTATAGGTACATCCCT 57.628 33.333 0.00 0.00 38.70 4.20
2342 3300 9.232882 AGTTATAGGTACATCCCTTTTTATCCA 57.767 33.333 0.00 0.00 35.97 3.41
2346 3304 9.951866 ATAGGTACATCCCTTTTTATCCATTTT 57.048 29.630 0.00 0.00 35.97 1.82
2347 3305 8.078060 AGGTACATCCCTTTTTATCCATTTTG 57.922 34.615 0.00 0.00 36.75 2.44
2348 3306 7.898636 AGGTACATCCCTTTTTATCCATTTTGA 59.101 33.333 0.00 0.00 36.75 2.69
2349 3307 8.704668 GGTACATCCCTTTTTATCCATTTTGAT 58.295 33.333 0.00 0.00 0.00 2.57
2350 3308 9.533253 GTACATCCCTTTTTATCCATTTTGATG 57.467 33.333 0.00 0.00 33.80 3.07
2351 3309 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2352 3310 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2353 3311 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2354 3312 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2355 3313 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2356 3314 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2363 3321 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2364 3322 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2365 3323 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2366 3324 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2367 3325 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2368 3326 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2369 3327 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2370 3328 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2371 3329 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2372 3330 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2373 3331 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2374 3332 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2393 3527 4.694037 GGGAGTACGAATGCAGTTACTTTT 59.306 41.667 0.48 0.00 0.00 2.27
2481 3623 5.705441 TCTGTTATTCAATTGGGTCAGTCAC 59.295 40.000 5.42 0.00 0.00 3.67
2858 4000 4.396357 TGGTTTTTACATCTGGTCCCAT 57.604 40.909 0.00 0.00 0.00 4.00
3078 4220 3.983044 AGGTATCCAGTTGAAGTGTCC 57.017 47.619 0.00 0.00 0.00 4.02
3192 4334 7.721402 ACCTTAACATGAACTTTAATGCAACA 58.279 30.769 0.00 0.00 0.00 3.33
3375 4517 3.131223 TCTTCTTCCGAGCTGATTGTAGG 59.869 47.826 0.00 0.00 0.00 3.18
3840 4982 4.671831 TGATCCAGCCAACTTTATTCCAA 58.328 39.130 0.00 0.00 0.00 3.53
4017 5159 7.361713 CCAAATCATGAAAACTTACGGAAGCTA 60.362 37.037 7.48 0.00 35.97 3.32
4092 5234 6.144402 CAGTGCCAAAACTCATAAAATGTGAC 59.856 38.462 0.00 0.00 0.00 3.67
4441 5583 7.065443 GGAATTAGTTACGTGTTATTTCTGGCT 59.935 37.037 0.00 0.00 0.00 4.75
4443 5585 3.435671 AGTTACGTGTTATTTCTGGCTGC 59.564 43.478 0.00 0.00 0.00 5.25
4707 5850 4.571372 GAGTTAATGTCTACTCCCTCCG 57.429 50.000 0.00 0.00 35.78 4.63
4708 5851 3.952967 GAGTTAATGTCTACTCCCTCCGT 59.047 47.826 0.00 0.00 35.78 4.69
4709 5852 4.351127 AGTTAATGTCTACTCCCTCCGTT 58.649 43.478 0.00 0.00 0.00 4.44
4710 5853 4.401837 AGTTAATGTCTACTCCCTCCGTTC 59.598 45.833 0.00 0.00 0.00 3.95
4711 5854 1.777941 ATGTCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
4712 5855 0.702902 TGTCTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
4713 5856 1.918262 TGTCTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
4714 5857 2.309755 TGTCTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
4715 5858 3.245371 TGTCTACTCCCTCCGTTCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
4716 5859 3.959449 GTCTACTCCCTCCGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
4717 5860 5.136105 GTCTACTCCCTCCGTTCCTAAATA 58.864 45.833 0.00 0.00 0.00 1.40
4718 5861 5.774184 GTCTACTCCCTCCGTTCCTAAATAT 59.226 44.000 0.00 0.00 0.00 1.28
4719 5862 6.944862 GTCTACTCCCTCCGTTCCTAAATATA 59.055 42.308 0.00 0.00 0.00 0.86
4720 5863 7.449704 GTCTACTCCCTCCGTTCCTAAATATAA 59.550 40.741 0.00 0.00 0.00 0.98
4721 5864 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4722 5865 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4723 5866 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4724 5867 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4725 5868 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4726 5869 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4727 5870 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4728 5871 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4745 5888 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
4746 5889 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
4751 5894 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
4752 5895 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
4753 5896 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
4754 5897 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
4755 5898 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
4756 5899 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
4757 5900 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
4758 5901 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
4759 5902 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
4760 5903 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
4762 5905 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
4763 5906 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
4778 5921 7.962964 ACGGATGTATGTAGACATATTTTGG 57.037 36.000 5.69 0.21 40.18 3.28
4779 5922 7.732025 ACGGATGTATGTAGACATATTTTGGA 58.268 34.615 5.69 0.00 40.18 3.53
4780 5923 7.872993 ACGGATGTATGTAGACATATTTTGGAG 59.127 37.037 5.69 0.00 40.18 3.86
4781 5924 7.872993 CGGATGTATGTAGACATATTTTGGAGT 59.127 37.037 5.69 0.00 40.18 3.85
4782 5925 8.993121 GGATGTATGTAGACATATTTTGGAGTG 58.007 37.037 5.69 0.00 40.18 3.51
4783 5926 9.547753 GATGTATGTAGACATATTTTGGAGTGT 57.452 33.333 5.69 0.00 40.18 3.55
4789 5932 9.817809 TGTAGACATATTTTGGAGTGTAGATTC 57.182 33.333 0.00 0.00 0.00 2.52
4790 5933 9.817809 GTAGACATATTTTGGAGTGTAGATTCA 57.182 33.333 0.00 0.00 0.00 2.57
4791 5934 8.723942 AGACATATTTTGGAGTGTAGATTCAC 57.276 34.615 0.00 0.00 38.46 3.18
4802 5945 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4803 5946 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4804 5947 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4805 5948 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4806 5949 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4807 5950 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4808 5951 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4809 5952 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4810 5953 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4811 5954 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4812 5955 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4813 5956 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4814 5957 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4815 5958 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4816 5959 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4817 5960 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4818 5961 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4819 5962 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4820 5963 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4821 5964 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4822 5965 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
4823 5966 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
4824 5967 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
4825 5968 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
4826 5969 6.153170 TCCGTATGTAGTCACTTGTTGGAATA 59.847 38.462 0.00 0.00 0.00 1.75
4827 5970 6.984474 CCGTATGTAGTCACTTGTTGGAATAT 59.016 38.462 0.00 0.00 0.00 1.28
4828 5971 7.169308 CCGTATGTAGTCACTTGTTGGAATATC 59.831 40.741 0.00 0.00 0.00 1.63
4829 5972 7.921214 CGTATGTAGTCACTTGTTGGAATATCT 59.079 37.037 0.00 0.00 0.00 1.98
4832 5975 8.589701 TGTAGTCACTTGTTGGAATATCTAGA 57.410 34.615 0.00 0.00 0.00 2.43
4833 5976 9.031537 TGTAGTCACTTGTTGGAATATCTAGAA 57.968 33.333 0.00 0.00 0.00 2.10
4834 5977 9.871238 GTAGTCACTTGTTGGAATATCTAGAAA 57.129 33.333 0.00 0.00 0.00 2.52
4836 5979 8.816894 AGTCACTTGTTGGAATATCTAGAAAGA 58.183 33.333 0.00 0.00 35.80 2.52
4837 5980 8.874816 GTCACTTGTTGGAATATCTAGAAAGAC 58.125 37.037 0.00 0.00 33.57 3.01
4838 5981 8.816894 TCACTTGTTGGAATATCTAGAAAGACT 58.183 33.333 0.00 0.00 33.57 3.24
4839 5982 9.442047 CACTTGTTGGAATATCTAGAAAGACTT 57.558 33.333 0.00 0.00 33.57 3.01
4852 5995 8.336498 TCTAGAAAGACTTATATTTGCGAACG 57.664 34.615 0.00 0.00 0.00 3.95
4853 5996 6.345920 AGAAAGACTTATATTTGCGAACGG 57.654 37.500 0.00 0.00 0.00 4.44
4854 5997 6.103997 AGAAAGACTTATATTTGCGAACGGA 58.896 36.000 0.00 0.00 0.00 4.69
4855 5998 5.968387 AAGACTTATATTTGCGAACGGAG 57.032 39.130 0.00 0.00 0.00 4.63
4856 5999 4.369182 AGACTTATATTTGCGAACGGAGG 58.631 43.478 0.00 0.00 0.00 4.30
4857 6000 3.463944 ACTTATATTTGCGAACGGAGGG 58.536 45.455 0.00 0.00 0.00 4.30
4858 6001 3.133362 ACTTATATTTGCGAACGGAGGGA 59.867 43.478 0.00 0.00 0.00 4.20
4859 6002 2.240493 ATATTTGCGAACGGAGGGAG 57.760 50.000 0.00 0.00 0.00 4.30
4860 6003 0.899720 TATTTGCGAACGGAGGGAGT 59.100 50.000 0.00 0.00 0.00 3.85
4894 6037 4.384208 CCCTCCGATCCAAAATAAGTGTCT 60.384 45.833 0.00 0.00 0.00 3.41
4937 6081 3.314080 TCAACCTTAGTTCAAAACTGCGG 59.686 43.478 2.65 0.00 42.84 5.69
4978 6128 8.328758 TGGAGGGAGTATTTTATAGGCATAATG 58.671 37.037 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.105752 GTCTTTGTCATCATACTTCGAGCT 58.894 41.667 0.00 0.00 0.00 4.09
86 87 2.164422 GCAACTTATCCCAAGCTTCCAC 59.836 50.000 0.00 0.00 0.00 4.02
93 94 5.220854 CCTTTATCACGCAACTTATCCCAAG 60.221 44.000 0.00 0.00 0.00 3.61
109 110 0.913205 TGGCCGGCTAACCTTTATCA 59.087 50.000 28.56 8.65 0.00 2.15
133 134 1.541368 ACTAGCCTTGGAAGCCCCA 60.541 57.895 0.00 0.00 44.93 4.96
145 146 1.972660 AATCCGCCACCTCACTAGCC 61.973 60.000 0.00 0.00 0.00 3.93
147 148 0.249073 CGAATCCGCCACCTCACTAG 60.249 60.000 0.00 0.00 0.00 2.57
149 150 1.982395 TCGAATCCGCCACCTCACT 60.982 57.895 0.00 0.00 35.37 3.41
173 174 2.094757 TTGTCTGGCGGCTCTTTCGA 62.095 55.000 11.43 0.00 0.00 3.71
174 175 1.630244 CTTGTCTGGCGGCTCTTTCG 61.630 60.000 11.43 0.00 0.00 3.46
221 222 4.809496 CTGCCAAGGAGCCCGCAT 62.809 66.667 0.00 0.00 0.00 4.73
223 224 4.496336 ATCTGCCAAGGAGCCCGC 62.496 66.667 0.00 0.00 0.00 6.13
224 225 1.379044 AAATCTGCCAAGGAGCCCG 60.379 57.895 0.00 0.00 0.00 6.13
225 226 0.323725 TGAAATCTGCCAAGGAGCCC 60.324 55.000 0.00 0.00 0.00 5.19
226 227 1.475682 CTTGAAATCTGCCAAGGAGCC 59.524 52.381 0.00 0.00 36.90 4.70
227 228 2.165998 ACTTGAAATCTGCCAAGGAGC 58.834 47.619 0.00 0.00 42.86 4.70
228 229 5.065731 GTGATACTTGAAATCTGCCAAGGAG 59.934 44.000 0.00 0.00 42.86 3.69
229 230 4.943705 GTGATACTTGAAATCTGCCAAGGA 59.056 41.667 0.00 0.00 42.86 3.36
241 244 4.180817 CGTATGTGCCAGTGATACTTGAA 58.819 43.478 0.00 0.00 0.00 2.69
244 247 3.887621 ACGTATGTGCCAGTGATACTT 57.112 42.857 0.00 0.00 0.00 2.24
264 267 2.953648 CTCTGCATGATGTATTGCCCAA 59.046 45.455 0.00 0.00 0.00 4.12
283 286 7.554118 TCCTTCATCTTGATGTCCATAAAACTC 59.446 37.037 10.01 0.00 0.00 3.01
284 287 7.405292 TCCTTCATCTTGATGTCCATAAAACT 58.595 34.615 10.01 0.00 0.00 2.66
289 292 5.163269 CCACTCCTTCATCTTGATGTCCATA 60.163 44.000 10.01 0.00 0.00 2.74
315 318 0.108041 GCGGGTCATTAGGTTCCGAA 60.108 55.000 4.15 0.00 42.94 4.30
316 319 1.259142 TGCGGGTCATTAGGTTCCGA 61.259 55.000 4.15 0.00 42.94 4.55
374 377 3.055819 GCCACTAGAGTCTCCAACAATGA 60.056 47.826 0.00 0.00 0.00 2.57
379 382 2.497675 TGATGCCACTAGAGTCTCCAAC 59.502 50.000 0.00 0.00 0.00 3.77
386 389 2.634940 ACACAACTGATGCCACTAGAGT 59.365 45.455 0.00 0.00 0.00 3.24
393 396 5.159273 TGATACTAACACAACTGATGCCA 57.841 39.130 0.00 0.00 0.00 4.92
395 398 5.967674 GCAATGATACTAACACAACTGATGC 59.032 40.000 0.00 0.00 0.00 3.91
400 403 6.434028 ACCAATGCAATGATACTAACACAACT 59.566 34.615 2.50 0.00 0.00 3.16
489 492 4.034048 GTGTCACACATTAATCCGGATGAC 59.966 45.833 19.95 19.41 36.58 3.06
511 514 8.846943 TGGATGTTTAGCGATAAATATCATGT 57.153 30.769 30.79 8.47 38.49 3.21
582 818 8.675705 AAAAAGACCCATCTTAACAAAAATGG 57.324 30.769 0.00 0.00 44.82 3.16
586 822 8.299990 TGAGAAAAAGACCCATCTTAACAAAA 57.700 30.769 0.00 0.00 44.82 2.44
587 823 7.889873 TGAGAAAAAGACCCATCTTAACAAA 57.110 32.000 0.00 0.00 44.82 2.83
588 824 9.010029 GTATGAGAAAAAGACCCATCTTAACAA 57.990 33.333 0.00 0.00 44.82 2.83
589 825 8.160765 TGTATGAGAAAAAGACCCATCTTAACA 58.839 33.333 0.00 0.00 44.82 2.41
590 826 8.561738 TGTATGAGAAAAAGACCCATCTTAAC 57.438 34.615 0.00 0.00 44.82 2.01
591 827 9.753674 ATTGTATGAGAAAAAGACCCATCTTAA 57.246 29.630 0.00 0.00 44.82 1.85
592 828 9.396022 GATTGTATGAGAAAAAGACCCATCTTA 57.604 33.333 0.00 0.00 44.82 2.10
594 830 7.405292 TGATTGTATGAGAAAAAGACCCATCT 58.595 34.615 0.00 0.00 36.42 2.90
595 831 7.630242 TGATTGTATGAGAAAAAGACCCATC 57.370 36.000 0.00 0.00 0.00 3.51
596 832 7.069085 CCATGATTGTATGAGAAAAAGACCCAT 59.931 37.037 0.00 0.00 0.00 4.00
597 833 6.377996 CCATGATTGTATGAGAAAAAGACCCA 59.622 38.462 0.00 0.00 0.00 4.51
598 834 6.681368 GCCATGATTGTATGAGAAAAAGACCC 60.681 42.308 0.00 0.00 0.00 4.46
599 835 6.127647 TGCCATGATTGTATGAGAAAAAGACC 60.128 38.462 0.00 0.00 0.00 3.85
600 836 6.855836 TGCCATGATTGTATGAGAAAAAGAC 58.144 36.000 0.00 0.00 0.00 3.01
601 837 7.339976 TCATGCCATGATTGTATGAGAAAAAGA 59.660 33.333 2.53 0.00 33.59 2.52
602 838 7.485810 TCATGCCATGATTGTATGAGAAAAAG 58.514 34.615 2.53 0.00 33.59 2.27
603 839 7.407393 TCATGCCATGATTGTATGAGAAAAA 57.593 32.000 2.53 0.00 33.59 1.94
635 871 0.948623 TGCTCAACGCGCAAGTATGT 60.949 50.000 5.73 0.00 43.27 2.29
645 881 7.561237 TCATTAATTTTAGTTTGCTCAACGC 57.439 32.000 0.00 0.00 40.75 4.84
747 983 6.712241 ACGCTGCAAATCATATGTATACTC 57.288 37.500 4.17 0.00 0.00 2.59
748 984 7.442364 AGAAACGCTGCAAATCATATGTATACT 59.558 33.333 4.17 0.00 0.00 2.12
749 985 7.576236 AGAAACGCTGCAAATCATATGTATAC 58.424 34.615 1.90 0.00 0.00 1.47
750 986 7.728847 AGAAACGCTGCAAATCATATGTATA 57.271 32.000 1.90 0.00 0.00 1.47
751 987 6.624352 AGAAACGCTGCAAATCATATGTAT 57.376 33.333 1.90 0.00 0.00 2.29
847 1132 4.035909 GCTTCTTTTTCTTTGTGGTCCGTA 59.964 41.667 0.00 0.00 0.00 4.02
878 1163 1.106944 CCCAACCTGGCTGTTTCGTT 61.107 55.000 0.00 0.00 35.79 3.85
891 1176 4.698201 TTCCTTTCATTTTTCCCCAACC 57.302 40.909 0.00 0.00 0.00 3.77
893 1178 4.164988 TGCTTTCCTTTCATTTTTCCCCAA 59.835 37.500 0.00 0.00 0.00 4.12
894 1179 3.713764 TGCTTTCCTTTCATTTTTCCCCA 59.286 39.130 0.00 0.00 0.00 4.96
897 1182 4.687948 GCTCTGCTTTCCTTTCATTTTTCC 59.312 41.667 0.00 0.00 0.00 3.13
898 1183 5.536260 AGCTCTGCTTTCCTTTCATTTTTC 58.464 37.500 0.00 0.00 33.89 2.29
904 1194 4.012374 CCATTAGCTCTGCTTTCCTTTCA 58.988 43.478 0.00 0.00 40.44 2.69
935 1225 2.711542 AGGGTTTTGCTATGTTCTCCG 58.288 47.619 0.00 0.00 0.00 4.63
987 1277 1.301009 GTCCATCGGAATCGGAGCC 60.301 63.158 0.00 0.00 36.95 4.70
988 1278 0.105039 AAGTCCATCGGAATCGGAGC 59.895 55.000 0.00 0.00 36.95 4.70
989 1279 1.600663 CGAAGTCCATCGGAATCGGAG 60.601 57.143 10.19 0.00 38.67 4.63
990 1280 0.384309 CGAAGTCCATCGGAATCGGA 59.616 55.000 10.19 0.00 38.67 4.55
1314 1604 2.757077 CTGGAGTGGGTGGGGAAC 59.243 66.667 0.00 0.00 0.00 3.62
1480 1770 2.128507 CGAGAGCTACCCTGACCCC 61.129 68.421 0.00 0.00 0.00 4.95
1491 1781 1.498166 CGAGAACGTGACGAGAGCT 59.502 57.895 13.70 2.48 34.56 4.09
1494 1784 2.559840 GCCGAGAACGTGACGAGA 59.440 61.111 13.70 0.00 37.88 4.04
1554 1844 0.250727 CCCCATTGAACACGACCACT 60.251 55.000 0.00 0.00 0.00 4.00
1611 1901 7.151308 CAGGATAGTAGGATCACATCTCAAAC 58.849 42.308 0.00 0.00 0.00 2.93
1722 2014 7.865385 GCAAAAACAGTGGACTAAATGTGATTA 59.135 33.333 0.00 0.00 0.00 1.75
1776 2068 7.099266 TCAGAAATTGTTCTTTTCTCAGCAA 57.901 32.000 0.00 0.00 41.55 3.91
1779 2071 8.355169 TGGAATCAGAAATTGTTCTTTTCTCAG 58.645 33.333 0.00 0.00 41.55 3.35
1793 2085 4.020928 TGTGCAATGCTTGGAATCAGAAAT 60.021 37.500 6.82 0.00 30.97 2.17
1869 2161 0.745845 CAGGACATTCGGGGAAGCTG 60.746 60.000 0.00 0.00 0.00 4.24
2007 2299 0.891904 GAAACCAAAGCTACGGCCCA 60.892 55.000 0.00 0.00 39.73 5.36
2101 3056 6.763135 GTGATTTCATGGCTATTACTCACAGA 59.237 38.462 0.00 0.00 32.73 3.41
2129 3084 7.338449 TCAATTACCCTATGCTTAACCAACTTC 59.662 37.037 0.00 0.00 0.00 3.01
2141 3096 4.532834 TCCCTTTGTCAATTACCCTATGC 58.467 43.478 0.00 0.00 0.00 3.14
2160 3115 2.290260 TGCGGTGGATTATGATGATCCC 60.290 50.000 13.01 5.27 41.97 3.85
2162 3117 4.673580 GCATTGCGGTGGATTATGATGATC 60.674 45.833 0.00 0.00 0.00 2.92
2211 3169 7.540474 ACTTTAAGGTCACTCAGAATGTAGA 57.460 36.000 0.00 0.00 37.40 2.59
2221 3179 6.482308 TGCAGAGTAAAACTTTAAGGTCACTC 59.518 38.462 13.57 13.57 0.00 3.51
2254 3212 2.904434 ACAAGTATTTCCAGACGGAGGT 59.096 45.455 0.00 0.00 44.10 3.85
2255 3213 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
2256 3214 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
2257 3215 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
2258 3216 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
2259 3217 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
2260 3218 8.514594 TCATTTTGATGACAAGTATTTCCAGAC 58.485 33.333 0.00 0.00 37.32 3.51
2261 3219 8.634335 TCATTTTGATGACAAGTATTTCCAGA 57.366 30.769 0.00 0.00 37.32 3.86
2262 3220 9.865321 ATTCATTTTGATGACAAGTATTTCCAG 57.135 29.630 0.00 0.00 37.32 3.86
2270 3228 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2271 3229 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2272 3230 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2273 3231 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2274 3232 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2275 3233 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2278 3236 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
2283 3241 8.314751 CGTCTAGATACATCCCCTTTTATTCAT 58.685 37.037 0.00 0.00 0.00 2.57
2284 3242 7.289317 ACGTCTAGATACATCCCCTTTTATTCA 59.711 37.037 0.00 0.00 0.00 2.57
2285 3243 7.668492 ACGTCTAGATACATCCCCTTTTATTC 58.332 38.462 0.00 0.00 0.00 1.75
2286 3244 7.613551 ACGTCTAGATACATCCCCTTTTATT 57.386 36.000 0.00 0.00 0.00 1.40
2287 3245 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
2288 3246 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
2289 3247 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
2290 3248 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
2291 3249 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
2292 3250 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
2293 3251 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
2306 3264 9.631452 GGGATGTACCTATAACTAAAATACGTC 57.369 37.037 0.00 0.00 38.98 4.34
2307 3265 9.372189 AGGGATGTACCTATAACTAAAATACGT 57.628 33.333 0.00 0.00 39.65 3.57
2316 3274 9.232882 TGGATAAAAAGGGATGTACCTATAACT 57.767 33.333 0.00 0.00 40.87 2.24
2320 3278 9.951866 AAAATGGATAAAAAGGGATGTACCTAT 57.048 29.630 0.00 0.00 40.87 2.57
2321 3279 9.196139 CAAAATGGATAAAAAGGGATGTACCTA 57.804 33.333 0.00 0.00 40.87 3.08
2322 3280 7.898636 TCAAAATGGATAAAAAGGGATGTACCT 59.101 33.333 0.00 0.00 44.56 3.08
2323 3281 8.073467 TCAAAATGGATAAAAAGGGATGTACC 57.927 34.615 0.00 0.00 38.08 3.34
2324 3282 9.533253 CATCAAAATGGATAAAAAGGGATGTAC 57.467 33.333 0.00 0.00 0.00 2.90
2325 3283 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
2326 3284 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
2327 3285 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
2328 3286 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
2329 3287 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
2330 3288 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
2338 3296 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2339 3297 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2340 3298 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2341 3299 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2342 3300 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2343 3301 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2344 3302 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2345 3303 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2346 3304 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2347 3305 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2348 3306 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2349 3307 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2350 3308 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2351 3309 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2352 3310 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2353 3311 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2354 3312 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2355 3313 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2356 3314 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2357 3315 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2358 3316 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2359 3317 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
2360 3318 1.746615 CGTACTCCCTCCGTCCGAA 60.747 63.158 0.00 0.00 0.00 4.30
2361 3319 2.124983 CGTACTCCCTCCGTCCGA 60.125 66.667 0.00 0.00 0.00 4.55
2362 3320 1.099879 ATTCGTACTCCCTCCGTCCG 61.100 60.000 0.00 0.00 0.00 4.79
2363 3321 0.384669 CATTCGTACTCCCTCCGTCC 59.615 60.000 0.00 0.00 0.00 4.79
2364 3322 0.248949 GCATTCGTACTCCCTCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
2365 3323 0.968901 TGCATTCGTACTCCCTCCGT 60.969 55.000 0.00 0.00 0.00 4.69
2366 3324 0.249073 CTGCATTCGTACTCCCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
2367 3325 0.824759 ACTGCATTCGTACTCCCTCC 59.175 55.000 0.00 0.00 0.00 4.30
2368 3326 2.674796 AACTGCATTCGTACTCCCTC 57.325 50.000 0.00 0.00 0.00 4.30
2369 3327 3.097614 AGTAACTGCATTCGTACTCCCT 58.902 45.455 0.00 0.00 0.00 4.20
2370 3328 3.521947 AGTAACTGCATTCGTACTCCC 57.478 47.619 0.00 0.00 0.00 4.30
2371 3329 5.857822 AAAAGTAACTGCATTCGTACTCC 57.142 39.130 0.00 0.00 0.00 3.85
2372 3330 7.578169 ACTAAAAGTAACTGCATTCGTACTC 57.422 36.000 0.00 0.00 0.00 2.59
2373 3331 9.298774 GATACTAAAAGTAACTGCATTCGTACT 57.701 33.333 0.00 0.00 33.89 2.73
2374 3332 9.298774 AGATACTAAAAGTAACTGCATTCGTAC 57.701 33.333 0.00 0.00 33.34 3.67
2431 3573 5.177327 GTGAAACAAACAATCATTCGCCATT 59.823 36.000 0.00 0.00 36.32 3.16
2858 4000 0.399949 AAGTCCTGGACCCACTGTCA 60.400 55.000 22.81 0.00 46.38 3.58
2898 4040 1.538276 GATGCGAACGAATTGCCTTG 58.462 50.000 0.00 0.00 0.00 3.61
3078 4220 0.106918 TAAGCACCATTAAGCCCCCG 60.107 55.000 0.00 0.00 0.00 5.73
3192 4334 6.126863 TCCTTTGATGTCACTACCTCAATT 57.873 37.500 0.00 0.00 39.17 2.32
3375 4517 2.035237 TTGGGGGATCGGTATCACGC 62.035 60.000 0.00 0.00 46.13 5.34
3840 4982 6.240002 GGATAGGTGGTCCATCAAATGAGTAT 60.240 42.308 4.57 0.00 35.76 2.12
4017 5159 3.281727 TCAACTTCTGGTGCTTCAAGT 57.718 42.857 0.00 0.00 0.00 3.16
4343 5485 2.028130 CTTGCAAGTAAACACCACCCA 58.972 47.619 18.65 0.00 0.00 4.51
4441 5583 7.554211 TGGCAATATTTTCAAGATAACATGCA 58.446 30.769 0.00 0.00 0.00 3.96
4443 5585 9.459640 CTCTGGCAATATTTTCAAGATAACATG 57.540 33.333 0.00 0.00 0.00 3.21
4698 5841 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4699 5842 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4700 5843 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4701 5844 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4702 5845 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4719 5862 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
4720 5863 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
4725 5868 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
4726 5869 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
4727 5870 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
4728 5871 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
4729 5872 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
4730 5873 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
4731 5874 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
4732 5875 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
4733 5876 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
4734 5877 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
4735 5878 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
4736 5879 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
4737 5880 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
4738 5881 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
4739 5882 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
4740 5883 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
4741 5884 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
4752 5895 9.653287 CCAAAATATGTCTACATACATCCGTAT 57.347 33.333 4.98 0.00 41.15 3.06
4753 5896 8.862085 TCCAAAATATGTCTACATACATCCGTA 58.138 33.333 4.98 0.00 41.15 4.02
4754 5897 7.732025 TCCAAAATATGTCTACATACATCCGT 58.268 34.615 4.98 0.00 41.15 4.69
4755 5898 7.872993 ACTCCAAAATATGTCTACATACATCCG 59.127 37.037 4.98 0.00 41.15 4.18
4756 5899 8.993121 CACTCCAAAATATGTCTACATACATCC 58.007 37.037 4.98 0.00 41.15 3.51
4757 5900 9.547753 ACACTCCAAAATATGTCTACATACATC 57.452 33.333 4.98 0.00 41.15 3.06
4763 5906 9.817809 GAATCTACACTCCAAAATATGTCTACA 57.182 33.333 0.00 0.00 0.00 2.74
4764 5907 9.817809 TGAATCTACACTCCAAAATATGTCTAC 57.182 33.333 0.00 0.00 0.00 2.59
4765 5908 9.817809 GTGAATCTACACTCCAAAATATGTCTA 57.182 33.333 0.00 0.00 37.73 2.59
4766 5909 8.543774 AGTGAATCTACACTCCAAAATATGTCT 58.456 33.333 0.00 0.00 46.36 3.41
4767 5910 8.723942 AGTGAATCTACACTCCAAAATATGTC 57.276 34.615 0.00 0.00 46.36 3.06
4780 5923 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4781 5924 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4782 5925 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4783 5926 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4784 5927 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4785 5928 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4786 5929 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4787 5930 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4788 5931 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4789 5932 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4790 5933 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4791 5934 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4792 5935 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4793 5936 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4794 5937 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4795 5938 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4796 5939 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4797 5940 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4798 5941 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4799 5942 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4800 5943 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
4801 5944 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
4802 5945 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
4803 5946 7.921214 AGATATTCCAACAAGTGACTACATACG 59.079 37.037 0.00 0.00 0.00 3.06
4806 5949 9.201989 TCTAGATATTCCAACAAGTGACTACAT 57.798 33.333 0.00 0.00 0.00 2.29
4807 5950 8.589701 TCTAGATATTCCAACAAGTGACTACA 57.410 34.615 0.00 0.00 0.00 2.74
4808 5951 9.871238 TTTCTAGATATTCCAACAAGTGACTAC 57.129 33.333 0.00 0.00 0.00 2.73
4810 5953 8.816894 TCTTTCTAGATATTCCAACAAGTGACT 58.183 33.333 0.00 0.00 0.00 3.41
4811 5954 8.874816 GTCTTTCTAGATATTCCAACAAGTGAC 58.125 37.037 0.00 0.00 31.86 3.67
4812 5955 8.816894 AGTCTTTCTAGATATTCCAACAAGTGA 58.183 33.333 0.00 0.00 31.86 3.41
4813 5956 9.442047 AAGTCTTTCTAGATATTCCAACAAGTG 57.558 33.333 0.00 0.00 31.86 3.16
4826 5969 8.969267 CGTTCGCAAATATAAGTCTTTCTAGAT 58.031 33.333 0.00 0.00 31.86 1.98
4827 5970 7.434307 CCGTTCGCAAATATAAGTCTTTCTAGA 59.566 37.037 0.00 0.00 0.00 2.43
4828 5971 7.434307 TCCGTTCGCAAATATAAGTCTTTCTAG 59.566 37.037 0.00 0.00 0.00 2.43
4829 5972 7.259882 TCCGTTCGCAAATATAAGTCTTTCTA 58.740 34.615 0.00 0.00 0.00 2.10
4830 5973 6.103997 TCCGTTCGCAAATATAAGTCTTTCT 58.896 36.000 0.00 0.00 0.00 2.52
4831 5974 6.340537 TCCGTTCGCAAATATAAGTCTTTC 57.659 37.500 0.00 0.00 0.00 2.62
4832 5975 5.293569 CCTCCGTTCGCAAATATAAGTCTTT 59.706 40.000 0.00 0.00 0.00 2.52
4833 5976 4.809426 CCTCCGTTCGCAAATATAAGTCTT 59.191 41.667 0.00 0.00 0.00 3.01
4834 5977 4.369182 CCTCCGTTCGCAAATATAAGTCT 58.631 43.478 0.00 0.00 0.00 3.24
4835 5978 3.493503 CCCTCCGTTCGCAAATATAAGTC 59.506 47.826 0.00 0.00 0.00 3.01
4836 5979 3.133362 TCCCTCCGTTCGCAAATATAAGT 59.867 43.478 0.00 0.00 0.00 2.24
4837 5980 3.724374 TCCCTCCGTTCGCAAATATAAG 58.276 45.455 0.00 0.00 0.00 1.73
4838 5981 3.133362 ACTCCCTCCGTTCGCAAATATAA 59.867 43.478 0.00 0.00 0.00 0.98
4839 5982 2.696707 ACTCCCTCCGTTCGCAAATATA 59.303 45.455 0.00 0.00 0.00 0.86
4840 5983 1.485066 ACTCCCTCCGTTCGCAAATAT 59.515 47.619 0.00 0.00 0.00 1.28
4841 5984 0.899720 ACTCCCTCCGTTCGCAAATA 59.100 50.000 0.00 0.00 0.00 1.40
4842 5985 0.899720 TACTCCCTCCGTTCGCAAAT 59.100 50.000 0.00 0.00 0.00 2.32
4843 5986 0.245539 CTACTCCCTCCGTTCGCAAA 59.754 55.000 0.00 0.00 0.00 3.68
4844 5987 0.609957 TCTACTCCCTCCGTTCGCAA 60.610 55.000 0.00 0.00 0.00 4.85
4845 5988 0.395311 ATCTACTCCCTCCGTTCGCA 60.395 55.000 0.00 0.00 0.00 5.10
4846 5989 0.030908 CATCTACTCCCTCCGTTCGC 59.969 60.000 0.00 0.00 0.00 4.70
4847 5990 0.030908 GCATCTACTCCCTCCGTTCG 59.969 60.000 0.00 0.00 0.00 3.95
4848 5991 1.404843 AGCATCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
4849 5992 2.091775 AGTAGCATCTACTCCCTCCGTT 60.092 50.000 0.94 0.00 0.00 4.44
4850 5993 1.495574 AGTAGCATCTACTCCCTCCGT 59.504 52.381 0.94 0.00 0.00 4.69
4851 5994 2.156098 GAGTAGCATCTACTCCCTCCG 58.844 57.143 18.47 0.00 38.33 4.63
4857 6000 2.156098 CGGAGGGAGTAGCATCTACTC 58.844 57.143 20.17 20.17 42.28 2.59
4858 6001 1.775459 TCGGAGGGAGTAGCATCTACT 59.225 52.381 6.24 6.24 0.00 2.57
4859 6002 2.273538 TCGGAGGGAGTAGCATCTAC 57.726 55.000 0.00 0.00 0.00 2.59
4860 6003 2.291024 GGATCGGAGGGAGTAGCATCTA 60.291 54.545 0.00 0.00 0.00 1.98
4937 6081 4.985538 TCCCTCCAATCCATAATAAGTGC 58.014 43.478 0.00 0.00 0.00 4.40
4978 6128 5.958955 AGAAATGAACTGCTTAAAGGATGC 58.041 37.500 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.