Multiple sequence alignment - TraesCS5D01G391100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G391100 chr5D 100.000 7589 0 0 1 7589 459869148 459861560 0.000000e+00 14015.0
1 TraesCS5D01G391100 chr5D 84.023 870 77 32 3615 4462 459765104 459764275 0.000000e+00 780.0
2 TraesCS5D01G391100 chr5D 83.793 870 78 33 3615 4462 459760642 459759814 0.000000e+00 767.0
3 TraesCS5D01G391100 chr5D 85.263 760 65 22 3725 4462 459752422 459751688 0.000000e+00 739.0
4 TraesCS5D01G391100 chr5D 85.794 718 71 17 4949 5660 459735824 459735132 0.000000e+00 732.0
5 TraesCS5D01G391100 chr5D 80.289 761 103 30 4367 5107 459731851 459731118 1.450000e-146 531.0
6 TraesCS5D01G391100 chr5D 80.711 591 91 12 4683 5262 459574480 459573902 9.040000e-119 438.0
7 TraesCS5D01G391100 chr5D 84.491 432 55 9 4832 5257 459750315 459749890 4.240000e-112 416.0
8 TraesCS5D01G391100 chr5D 87.975 316 30 5 2947 3258 459737721 459737410 4.330000e-97 366.0
9 TraesCS5D01G391100 chr5D 87.542 297 35 2 3233 3528 459765544 459765249 7.290000e-90 342.0
10 TraesCS5D01G391100 chr5D 88.256 281 31 2 3233 3512 459765861 459765582 1.220000e-87 335.0
11 TraesCS5D01G391100 chr5D 84.211 342 37 7 4553 4880 459736806 459736468 4.420000e-82 316.0
12 TraesCS5D01G391100 chr5D 99.296 142 1 0 7448 7589 174480195 174480336 2.720000e-64 257.0
13 TraesCS5D01G391100 chr5D 99.296 142 1 0 7448 7589 245457530 245457671 2.720000e-64 257.0
14 TraesCS5D01G391100 chr5D 99.296 142 1 0 7448 7589 348110784 348110925 2.720000e-64 257.0
15 TraesCS5D01G391100 chr5D 78.846 364 52 17 2817 3162 459575152 459574796 9.910000e-54 222.0
16 TraesCS5D01G391100 chr5D 88.235 170 16 2 4780 4949 459736422 459736257 4.640000e-47 200.0
17 TraesCS5D01G391100 chr5D 80.866 277 34 8 6662 6930 459747341 459747076 4.640000e-47 200.0
18 TraesCS5D01G391100 chr5D 87.671 73 3 6 2492 2559 63616055 63615984 6.310000e-11 80.5
19 TraesCS5D01G391100 chr5D 94.340 53 2 1 2512 2563 457986727 457986779 6.310000e-11 80.5
20 TraesCS5D01G391100 chr5A 95.280 4492 124 17 2553 7009 579437088 579441526 0.000000e+00 7040.0
21 TraesCS5D01G391100 chr5A 87.846 2567 164 52 1 2489 579434593 579437089 0.000000e+00 2876.0
22 TraesCS5D01G391100 chr5A 83.676 729 92 12 5258 5982 579902564 579901859 0.000000e+00 662.0
23 TraesCS5D01G391100 chr5A 79.694 980 125 27 4780 5734 579152509 579151579 2.310000e-179 640.0
24 TraesCS5D01G391100 chr5A 92.124 419 26 4 7033 7445 560765656 560765239 1.100000e-162 584.0
25 TraesCS5D01G391100 chr5A 84.601 526 54 17 3615 4136 579918350 579917848 1.470000e-136 497.0
26 TraesCS5D01G391100 chr5A 84.030 526 52 14 3615 4136 579855146 579854649 1.920000e-130 477.0
27 TraesCS5D01G391100 chr5A 84.677 496 56 9 5492 5982 579861279 579860799 1.920000e-130 477.0
28 TraesCS5D01G391100 chr5A 83.501 497 61 11 5492 5982 580192330 580191849 1.940000e-120 444.0
29 TraesCS5D01G391100 chr5A 86.510 341 33 10 4130 4466 579868151 579867820 5.600000e-96 363.0
30 TraesCS5D01G391100 chr5A 81.718 454 47 18 6118 6567 579845273 579845694 5.640000e-91 346.0
31 TraesCS5D01G391100 chr5A 87.542 297 31 5 3233 3528 579841730 579842021 9.430000e-89 339.0
32 TraesCS5D01G391100 chr5A 84.570 337 42 6 4130 4464 579917442 579917114 7.340000e-85 326.0
33 TraesCS5D01G391100 chr5A 90.952 210 18 1 2947 3156 579846733 579846941 1.610000e-71 281.0
34 TraesCS5D01G391100 chr5A 88.571 210 23 1 2947 3156 579856965 579856757 3.510000e-63 254.0
35 TraesCS5D01G391100 chr5A 81.227 277 38 6 6662 6930 579168153 579168423 2.150000e-50 211.0
36 TraesCS5D01G391100 chr5A 87.283 173 19 2 3248 3420 579855479 579855310 2.160000e-45 195.0
37 TraesCS5D01G391100 chr5A 84.971 173 23 2 3248 3420 579869395 579869226 1.010000e-38 172.0
38 TraesCS5D01G391100 chr5A 85.417 144 14 2 3091 3234 579841542 579841678 7.940000e-30 143.0
39 TraesCS5D01G391100 chr5B 96.434 1991 37 10 4884 6853 564990023 564988046 0.000000e+00 3253.0
40 TraesCS5D01G391100 chr5B 93.816 1326 46 14 2399 3722 564992493 564991202 0.000000e+00 1962.0
41 TraesCS5D01G391100 chr5B 96.499 1171 22 3 3792 4949 564991206 564990042 0.000000e+00 1917.0
42 TraesCS5D01G391100 chr5B 86.241 1301 121 31 121 1381 564994877 564993595 0.000000e+00 1358.0
43 TraesCS5D01G391100 chr5B 92.005 888 42 13 1497 2377 564993354 564992489 0.000000e+00 1219.0
44 TraesCS5D01G391100 chr5B 81.335 1468 189 29 4296 5734 563663547 563662136 0.000000e+00 1114.0
45 TraesCS5D01G391100 chr5B 82.203 1180 151 23 4296 5445 563695457 563694307 0.000000e+00 961.0
46 TraesCS5D01G391100 chr5B 84.235 869 83 29 3615 4462 564439799 564438964 0.000000e+00 797.0
47 TraesCS5D01G391100 chr5B 84.023 870 85 31 3615 4462 564377648 564376811 0.000000e+00 787.0
48 TraesCS5D01G391100 chr5B 84.679 731 82 14 5258 5982 564526496 564525790 0.000000e+00 702.0
49 TraesCS5D01G391100 chr5B 84.203 728 87 13 5260 5982 564464584 564463880 0.000000e+00 682.0
50 TraesCS5D01G391100 chr5B 85.586 666 58 24 3615 4269 564316931 564316293 0.000000e+00 664.0
51 TraesCS5D01G391100 chr5B 83.699 730 86 16 5260 5982 564233576 564232873 0.000000e+00 658.0
52 TraesCS5D01G391100 chr5B 84.942 684 63 19 3797 4462 564479702 564479041 0.000000e+00 656.0
53 TraesCS5D01G391100 chr5B 83.657 722 88 13 5266 5982 564193997 564193301 0.000000e+00 652.0
54 TraesCS5D01G391100 chr5B 83.942 685 97 8 4579 5257 564465325 564464648 1.790000e-180 643.0
55 TraesCS5D01G391100 chr5B 84.393 519 51 11 3960 4462 564446226 564445722 4.120000e-132 483.0
56 TraesCS5D01G391100 chr5B 84.510 510 51 19 3615 4120 564530140 564529655 5.330000e-131 479.0
57 TraesCS5D01G391100 chr5B 83.146 534 79 10 4732 5257 564527086 564526556 1.920000e-130 477.0
58 TraesCS5D01G391100 chr5B 81.514 449 50 17 6120 6567 564477723 564477307 9.430000e-89 339.0
59 TraesCS5D01G391100 chr5B 87.205 297 36 2 3233 3528 564486237 564485942 3.390000e-88 337.0
60 TraesCS5D01G391100 chr5B 85.251 339 36 7 4130 4466 564529285 564528959 3.390000e-88 337.0
61 TraesCS5D01G391100 chr5B 78.424 533 77 35 6083 6592 563661839 563661322 5.720000e-81 313.0
62 TraesCS5D01G391100 chr5B 86.833 281 35 2 3233 3512 564486553 564486274 5.720000e-81 313.0
63 TraesCS5D01G391100 chr5B 78.030 528 82 31 6083 6592 563693680 563693169 1.240000e-77 302.0
64 TraesCS5D01G391100 chr5B 97.516 161 4 0 6849 7009 564986628 564986468 7.500000e-70 276.0
65 TraesCS5D01G391100 chr5B 90.000 210 20 1 2947 3156 564452868 564452660 3.490000e-68 270.0
66 TraesCS5D01G391100 chr5B 89.524 210 20 2 2947 3156 564532055 564531848 1.620000e-66 265.0
67 TraesCS5D01G391100 chr5B 89.048 210 21 2 2947 3156 564473339 564473132 7.550000e-65 259.0
68 TraesCS5D01G391100 chr5B 83.942 274 34 2 2884 3157 564181285 564181022 3.510000e-63 254.0
69 TraesCS5D01G391100 chr5B 80.866 277 37 6 6665 6931 564515230 564514960 3.590000e-48 204.0
70 TraesCS5D01G391100 chr5B 80.816 245 37 8 6696 6931 564092416 564092173 4.680000e-42 183.0
71 TraesCS5D01G391100 chr5B 84.211 76 6 4 2485 2555 285826166 285826240 1.370000e-07 69.4
72 TraesCS5D01G391100 chrUn 81.527 1467 188 29 4296 5734 315403841 315402430 0.000000e+00 1131.0
73 TraesCS5D01G391100 chrUn 81.459 1467 189 29 4296 5734 68137671 68139082 0.000000e+00 1125.0
74 TraesCS5D01G391100 chrUn 77.978 554 85 30 6062 6592 68139351 68139890 5.720000e-81 313.0
75 TraesCS5D01G391100 chrUn 77.978 554 85 29 6062 6592 315402161 315401622 5.720000e-81 313.0
76 TraesCS5D01G391100 chrUn 77.978 554 85 30 6062 6592 326011495 326012034 5.720000e-81 313.0
77 TraesCS5D01G391100 chr6B 94.498 418 20 3 7034 7451 205046469 205046883 6.420000e-180 641.0
78 TraesCS5D01G391100 chr4B 93.224 428 18 6 7028 7445 182297099 182296673 3.010000e-173 619.0
79 TraesCS5D01G391100 chr2D 93.079 419 18 4 7035 7445 618317701 618317286 3.030000e-168 603.0
80 TraesCS5D01G391100 chr2D 92.637 421 21 5 7033 7445 1641972 1641554 1.410000e-166 597.0
81 TraesCS5D01G391100 chr2D 97.826 46 1 0 2512 2557 377155035 377155080 6.310000e-11 80.5
82 TraesCS5D01G391100 chr7D 92.806 417 20 8 7037 7445 154598957 154599371 5.070000e-166 595.0
83 TraesCS5D01G391100 chr7A 92.530 415 26 4 7035 7445 180161916 180162329 2.360000e-164 590.0
84 TraesCS5D01G391100 chr7A 91.667 408 20 5 7036 7443 595213940 595213547 3.090000e-153 553.0
85 TraesCS5D01G391100 chr6A 90.909 418 32 3 7033 7445 39000660 39001076 2.390000e-154 556.0
86 TraesCS5D01G391100 chr6D 92.105 266 10 6 7028 7282 79863084 79863349 1.560000e-96 364.0
87 TraesCS5D01G391100 chr6D 99.296 142 1 0 7448 7589 44084883 44084742 2.720000e-64 257.0
88 TraesCS5D01G391100 chr4D 99.296 142 1 0 7448 7589 488086683 488086824 2.720000e-64 257.0
89 TraesCS5D01G391100 chr4D 85.333 75 6 5 2484 2554 455925210 455925283 1.060000e-08 73.1
90 TraesCS5D01G391100 chr3D 99.296 142 1 0 7448 7589 264507335 264507476 2.720000e-64 257.0
91 TraesCS5D01G391100 chr3D 99.296 142 1 0 7448 7589 289245470 289245329 2.720000e-64 257.0
92 TraesCS5D01G391100 chr3D 95.652 46 2 0 2512 2557 435704560 435704515 2.940000e-09 75.0
93 TraesCS5D01G391100 chr1D 99.296 142 1 0 7448 7589 182457485 182457344 2.720000e-64 257.0
94 TraesCS5D01G391100 chr1D 99.296 142 1 0 7448 7589 493693581 493693440 2.720000e-64 257.0
95 TraesCS5D01G391100 chr2A 86.301 73 6 4 2508 2578 776162447 776162517 8.170000e-10 76.8
96 TraesCS5D01G391100 chr2A 84.211 76 3 6 2493 2563 764314178 764314249 1.770000e-06 65.8
97 TraesCS5D01G391100 chr1B 90.909 55 3 2 2512 2566 555770618 555770566 1.060000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G391100 chr5D 459861560 459869148 7588 True 14015.000000 14015 100.000000 1 7589 1 chr5D.!!$R2 7588
1 TraesCS5D01G391100 chr5D 459759814 459765861 6047 True 556.000000 780 85.903500 3233 4462 4 chr5D.!!$R6 1229
2 TraesCS5D01G391100 chr5D 459747076 459752422 5346 True 451.666667 739 83.540000 3725 6930 3 chr5D.!!$R5 3205
3 TraesCS5D01G391100 chr5D 459731118 459737721 6603 True 429.000000 732 85.300800 2947 5660 5 chr5D.!!$R4 2713
4 TraesCS5D01G391100 chr5D 459573902 459575152 1250 True 330.000000 438 79.778500 2817 5262 2 chr5D.!!$R3 2445
5 TraesCS5D01G391100 chr5A 579434593 579441526 6933 False 4958.000000 7040 91.563000 1 7009 2 chr5A.!!$F2 7008
6 TraesCS5D01G391100 chr5A 579901859 579902564 705 True 662.000000 662 83.676000 5258 5982 1 chr5A.!!$R3 724
7 TraesCS5D01G391100 chr5A 579151579 579152509 930 True 640.000000 640 79.694000 4780 5734 1 chr5A.!!$R2 954
8 TraesCS5D01G391100 chr5A 579917114 579918350 1236 True 411.500000 497 84.585500 3615 4464 2 chr5A.!!$R7 849
9 TraesCS5D01G391100 chr5A 579854649 579861279 6630 True 350.750000 477 86.140250 2947 5982 4 chr5A.!!$R5 3035
10 TraesCS5D01G391100 chr5A 579841542 579846941 5399 False 277.250000 346 86.407250 2947 6567 4 chr5A.!!$F3 3620
11 TraesCS5D01G391100 chr5A 579867820 579869395 1575 True 267.500000 363 85.740500 3248 4466 2 chr5A.!!$R6 1218
12 TraesCS5D01G391100 chr5B 564986468 564994877 8409 True 1664.166667 3253 93.751833 121 7009 6 chr5B.!!$R17 6888
13 TraesCS5D01G391100 chr5B 564438964 564439799 835 True 797.000000 797 84.235000 3615 4462 1 chr5B.!!$R7 847
14 TraesCS5D01G391100 chr5B 564376811 564377648 837 True 787.000000 787 84.023000 3615 4462 1 chr5B.!!$R6 847
15 TraesCS5D01G391100 chr5B 563661322 563663547 2225 True 713.500000 1114 79.879500 4296 6592 2 chr5B.!!$R11 2296
16 TraesCS5D01G391100 chr5B 564316293 564316931 638 True 664.000000 664 85.586000 3615 4269 1 chr5B.!!$R5 654
17 TraesCS5D01G391100 chr5B 564463880 564465325 1445 True 662.500000 682 84.072500 4579 5982 2 chr5B.!!$R13 1403
18 TraesCS5D01G391100 chr5B 564232873 564233576 703 True 658.000000 658 83.699000 5260 5982 1 chr5B.!!$R4 722
19 TraesCS5D01G391100 chr5B 564193301 564193997 696 True 652.000000 652 83.657000 5266 5982 1 chr5B.!!$R3 716
20 TraesCS5D01G391100 chr5B 563693169 563695457 2288 True 631.500000 961 80.116500 4296 6592 2 chr5B.!!$R12 2296
21 TraesCS5D01G391100 chr5B 564445722 564446226 504 True 483.000000 483 84.393000 3960 4462 1 chr5B.!!$R8 502
22 TraesCS5D01G391100 chr5B 564525790 564532055 6265 True 452.000000 702 85.422000 2947 5982 5 chr5B.!!$R16 3035
23 TraesCS5D01G391100 chr5B 564473132 564479702 6570 True 418.000000 656 85.168000 2947 6567 3 chr5B.!!$R14 3620
24 TraesCS5D01G391100 chr5B 564485942 564486553 611 True 325.000000 337 87.019000 3233 3528 2 chr5B.!!$R15 295
25 TraesCS5D01G391100 chrUn 315401622 315403841 2219 True 722.000000 1131 79.752500 4296 6592 2 chrUn.!!$R1 2296
26 TraesCS5D01G391100 chrUn 68137671 68139890 2219 False 719.000000 1125 79.718500 4296 6592 2 chrUn.!!$F2 2296
27 TraesCS5D01G391100 chrUn 326011495 326012034 539 False 313.000000 313 77.978000 6062 6592 1 chrUn.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 561 0.171903 CACTAAAGCCACCATGCAGC 59.828 55.000 0.00 0.0 0.00 5.25 F
1183 1251 0.467290 CGAGGAGGAGGAGGAGGAAG 60.467 65.000 0.00 0.0 0.00 3.46 F
1946 2160 0.874390 GAGTCGACAATGCAGCCAAA 59.126 50.000 19.50 0.0 0.00 3.28 F
2031 2245 0.036875 AGTACAGGGTGGCTCAAAGC 59.963 55.000 0.00 0.0 41.46 3.51 F
2610 2842 0.105964 TTGGTATAGCCGCGCTTCAT 59.894 50.000 5.56 0.0 40.44 2.57 F
3613 6378 1.810755 CTGTAAGTTTTCCCTTCGCCC 59.189 52.381 0.00 0.0 0.00 6.13 F
3795 6562 5.297547 ACATGTCGACACTTGTAACTTGAT 58.702 37.500 22.71 0.0 38.74 2.57 F
5160 16396 2.356665 TGTTTTGCAGGGTAGAAGCA 57.643 45.000 0.00 0.0 36.32 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2135 0.247460 TGCATTGTCGACTCCAGAGG 59.753 55.000 17.92 0.89 0.00 3.69 R
2032 2246 0.321671 TCCCTTCCGCTCTGTTTGAG 59.678 55.000 0.00 0.00 45.33 3.02 R
3444 6151 0.462047 GACACGTGCAATAGGAGGGG 60.462 60.000 17.22 0.00 0.00 4.79 R
3613 6378 2.872557 CTGCAGTTGGGCGTCATG 59.127 61.111 5.25 0.00 36.28 3.07 R
4290 12309 6.560253 TTCTAAGATTTTGCTTCACCTCAC 57.440 37.500 0.00 0.00 0.00 3.51 R
5101 16333 3.259374 ACAACACAAAACACATGGTCCAA 59.741 39.130 0.00 0.00 0.00 3.53 R
5160 16396 3.492102 TCTAGCTGAGGCAACAGTTTT 57.508 42.857 0.00 3.47 41.70 2.43 R
6714 21631 0.179056 AGACCACCACAGGACAAACG 60.179 55.000 0.00 0.00 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.626217 GGGACCCGTGACTTGAAATATTC 59.374 47.826 0.00 0.00 0.00 1.75
32 33 5.395990 GGGACCCGTGACTTGAAATATTCTA 60.396 44.000 0.00 0.00 0.00 2.10
37 38 6.753279 CCCGTGACTTGAAATATTCTACGTAA 59.247 38.462 0.00 0.00 0.00 3.18
104 105 8.242085 TCATCACACATTTAAAATGTTCATGC 57.758 30.769 5.88 0.00 0.00 4.06
106 107 7.640616 TCACACATTTAAAATGTTCATGCAG 57.359 32.000 5.88 0.00 0.00 4.41
269 292 6.552859 TCACACGTTCAACAATATGTTCAT 57.447 33.333 0.00 0.00 38.77 2.57
482 531 7.886405 AAGAATCTACTCAAAACCGTCTTAC 57.114 36.000 0.00 0.00 0.00 2.34
511 560 0.813184 CCACTAAAGCCACCATGCAG 59.187 55.000 0.00 0.00 0.00 4.41
512 561 0.171903 CACTAAAGCCACCATGCAGC 59.828 55.000 0.00 0.00 0.00 5.25
536 585 3.393970 CCAGAGGCAAGGCGAGGA 61.394 66.667 0.00 0.00 0.00 3.71
551 600 2.735762 GCGAGGAAAAGCTACATCTCGT 60.736 50.000 21.73 4.19 43.82 4.18
569 627 1.156736 GTGACACAGCACCCATGTAC 58.843 55.000 0.00 0.00 32.68 2.90
591 649 6.639632 ACAAAATAAGCACTGTTGAGATGT 57.360 33.333 0.00 0.00 0.00 3.06
620 678 0.663153 AACGAACTGCAGAACTTGGC 59.337 50.000 23.35 0.15 0.00 4.52
625 683 1.975407 CTGCAGAACTTGGCCCCAG 60.975 63.158 8.42 0.00 0.00 4.45
643 701 0.814010 AGTCACGGCGTTTCAGCTTT 60.814 50.000 11.19 0.00 37.29 3.51
658 716 5.818136 TCAGCTTTTACATACTTCATGGC 57.182 39.130 0.00 0.00 39.13 4.40
723 781 4.014406 CACACCCTACAATTTTACCCTCC 58.986 47.826 0.00 0.00 0.00 4.30
726 784 4.705023 CACCCTACAATTTTACCCTCCTTG 59.295 45.833 0.00 0.00 0.00 3.61
728 786 4.264217 CCCTACAATTTTACCCTCCTTGGT 60.264 45.833 0.00 0.00 42.62 3.67
736 794 5.693769 TTTACCCTCCTTGGTATCTCTTG 57.306 43.478 0.00 0.00 40.49 3.02
764 826 1.078708 AATTCGCCACCTACCCACG 60.079 57.895 0.00 0.00 0.00 4.94
977 1044 7.042321 TCCAATTTCTTCTATTTATACACCGCG 60.042 37.037 0.00 0.00 0.00 6.46
1133 1201 0.687757 CTGATTCTCCGTCTCCCCCA 60.688 60.000 0.00 0.00 0.00 4.96
1181 1249 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1182 1250 1.215679 ACGAGGAGGAGGAGGAGGAA 61.216 60.000 0.00 0.00 0.00 3.36
1183 1251 0.467290 CGAGGAGGAGGAGGAGGAAG 60.467 65.000 0.00 0.00 0.00 3.46
1414 1486 2.600731 CGCCCTCCCTCTCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
1415 1487 1.710996 CCGCCCTCCCTCTCTCTCTA 61.711 65.000 0.00 0.00 0.00 2.43
1607 1804 1.081641 TTCGACGCGACTTCCTGAC 60.082 57.895 15.93 0.00 34.89 3.51
1734 1933 2.731587 CTTGGCCGGCGTTCTTGTTG 62.732 60.000 22.54 0.00 0.00 3.33
1760 1959 2.811317 GCTGGGTCTGCTTCGTCG 60.811 66.667 0.00 0.00 0.00 5.12
1795 1994 2.434359 GGCGTTTCCTCTCCGGTG 60.434 66.667 0.00 0.00 0.00 4.94
1835 2034 2.742372 CGGAGAAACCCTGTGCCG 60.742 66.667 0.00 0.00 34.64 5.69
1836 2035 3.056328 GGAGAAACCCTGTGCCGC 61.056 66.667 0.00 0.00 0.00 6.53
1837 2036 3.056328 GAGAAACCCTGTGCCGCC 61.056 66.667 0.00 0.00 0.00 6.13
1921 2135 2.903855 CGCCATGCCATCCCTGTC 60.904 66.667 0.00 0.00 0.00 3.51
1946 2160 0.874390 GAGTCGACAATGCAGCCAAA 59.126 50.000 19.50 0.00 0.00 3.28
2031 2245 0.036875 AGTACAGGGTGGCTCAAAGC 59.963 55.000 0.00 0.00 41.46 3.51
2044 2258 1.196354 CTCAAAGCCTCAAACAGAGCG 59.804 52.381 0.00 0.00 43.31 5.03
2186 2411 4.872664 ACATTAGCAGCCGTAGTATTCTC 58.127 43.478 0.00 0.00 0.00 2.87
2224 2451 4.758674 TCTTGTTTCTCTCATTCCAAGCAG 59.241 41.667 0.00 0.00 31.64 4.24
2490 2717 2.724690 GTGGCGTGCTGTCTTATATACG 59.275 50.000 0.00 0.00 34.93 3.06
2506 2733 3.158648 CGCCCTCCGTCCCCATAA 61.159 66.667 0.00 0.00 0.00 1.90
2507 2734 2.516888 CGCCCTCCGTCCCCATAAT 61.517 63.158 0.00 0.00 0.00 1.28
2508 2735 1.189524 CGCCCTCCGTCCCCATAATA 61.190 60.000 0.00 0.00 0.00 0.98
2509 2736 1.286248 GCCCTCCGTCCCCATAATAT 58.714 55.000 0.00 0.00 0.00 1.28
2510 2737 2.474112 GCCCTCCGTCCCCATAATATA 58.526 52.381 0.00 0.00 0.00 0.86
2511 2738 2.841881 GCCCTCCGTCCCCATAATATAA 59.158 50.000 0.00 0.00 0.00 0.98
2513 2740 4.101856 CCCTCCGTCCCCATAATATAACT 58.898 47.826 0.00 0.00 0.00 2.24
2514 2741 5.274822 CCCTCCGTCCCCATAATATAACTA 58.725 45.833 0.00 0.00 0.00 2.24
2516 2743 5.956563 CCTCCGTCCCCATAATATAACTAGT 59.043 44.000 0.00 0.00 0.00 2.57
2517 2744 6.127423 CCTCCGTCCCCATAATATAACTAGTG 60.127 46.154 0.00 0.00 0.00 2.74
2519 2746 5.718130 CCGTCCCCATAATATAACTAGTGGA 59.282 44.000 0.00 0.00 0.00 4.02
2520 2747 6.211986 CCGTCCCCATAATATAACTAGTGGAA 59.788 42.308 0.00 0.00 0.00 3.53
2521 2748 7.256404 CCGTCCCCATAATATAACTAGTGGAAA 60.256 40.741 0.00 0.00 0.00 3.13
2522 2749 8.152246 CGTCCCCATAATATAACTAGTGGAAAA 58.848 37.037 0.00 0.00 0.00 2.29
2523 2750 9.856162 GTCCCCATAATATAACTAGTGGAAAAA 57.144 33.333 0.00 0.00 0.00 1.94
2610 2842 0.105964 TTGGTATAGCCGCGCTTCAT 59.894 50.000 5.56 0.00 40.44 2.57
2614 2846 2.603560 GGTATAGCCGCGCTTCATATTC 59.396 50.000 5.56 0.00 40.44 1.75
2620 2852 3.815401 AGCCGCGCTTCATATTCTAAAAT 59.185 39.130 5.56 0.00 33.89 1.82
2625 2857 7.326063 GCCGCGCTTCATATTCTAAAATAAAAT 59.674 33.333 5.56 0.00 31.28 1.82
2626 2858 8.629986 CCGCGCTTCATATTCTAAAATAAAATG 58.370 33.333 5.56 0.00 31.28 2.32
2636 2868 6.588719 TCTAAAATAAAATGTGGCTGCACT 57.411 33.333 0.50 0.00 0.00 4.40
2735 2968 2.797156 CGTTCTTGATCGATAAGCCTGG 59.203 50.000 0.00 0.00 0.00 4.45
3333 6039 9.173939 CAAAATCTTCTGTTCATCTGTAACAAC 57.826 33.333 0.00 0.00 36.46 3.32
3423 6130 6.613699 TCATCTCAGTAATAATTGGGCCAAT 58.386 36.000 25.94 25.94 35.39 3.16
3613 6378 1.810755 CTGTAAGTTTTCCCTTCGCCC 59.189 52.381 0.00 0.00 0.00 6.13
3795 6562 5.297547 ACATGTCGACACTTGTAACTTGAT 58.702 37.500 22.71 0.00 38.74 2.57
5160 16396 2.356665 TGTTTTGCAGGGTAGAAGCA 57.643 45.000 0.00 0.00 36.32 3.91
6101 18909 4.515944 TGTTTGACCCCTTGTTTATACACG 59.484 41.667 0.00 0.00 32.98 4.49
6624 21540 5.522315 TCCTCTCCTCTGTCTCTTTCTTA 57.478 43.478 0.00 0.00 0.00 2.10
6651 21568 7.124448 TGGTAATTTTGTTTCTTACCCACTGTT 59.876 33.333 7.93 0.00 42.38 3.16
6691 21608 4.400567 CCCTGATTTGGTCAAAAGATCTCC 59.599 45.833 0.00 0.00 36.14 3.71
6692 21609 5.259632 CCTGATTTGGTCAAAAGATCTCCT 58.740 41.667 0.00 0.00 36.14 3.69
6693 21610 5.713861 CCTGATTTGGTCAAAAGATCTCCTT 59.286 40.000 0.00 0.00 36.14 3.36
6714 21631 5.422214 TTGTTCTAGGTGAGATTCCTTCC 57.578 43.478 0.00 0.00 36.60 3.46
6816 21735 0.535780 CTGAACAGCTGCCTCCACAA 60.536 55.000 15.27 0.00 0.00 3.33
7025 25260 9.606631 AAAGTTGATTACAATTTGTAAGCCAAA 57.393 25.926 26.22 16.34 45.60 3.28
7034 25269 2.871096 TGTAAGCCAAATTCCCTCGT 57.129 45.000 0.00 0.00 0.00 4.18
7036 25271 2.014857 GTAAGCCAAATTCCCTCGTCC 58.985 52.381 0.00 0.00 0.00 4.79
7038 25273 2.112815 GCCAAATTCCCTCGTCCCG 61.113 63.158 0.00 0.00 0.00 5.14
7039 25274 1.298667 CCAAATTCCCTCGTCCCGT 59.701 57.895 0.00 0.00 0.00 5.28
7041 25276 0.743345 CAAATTCCCTCGTCCCGTCC 60.743 60.000 0.00 0.00 0.00 4.79
7042 25277 1.907222 AAATTCCCTCGTCCCGTCCC 61.907 60.000 0.00 0.00 0.00 4.46
7043 25278 2.817420 AATTCCCTCGTCCCGTCCCT 62.817 60.000 0.00 0.00 0.00 4.20
7044 25279 3.951769 TTCCCTCGTCCCGTCCCTC 62.952 68.421 0.00 0.00 0.00 4.30
7071 25306 4.517934 CTAGGGCGACTCGGGGGA 62.518 72.222 0.00 0.00 0.00 4.81
7077 25312 2.188161 GCGACTCGGGGGAGTCTAG 61.188 68.421 18.78 8.23 46.85 2.43
7078 25313 1.526455 CGACTCGGGGGAGTCTAGG 60.526 68.421 18.78 3.69 46.85 3.02
7079 25314 1.152715 GACTCGGGGGAGTCTAGGG 60.153 68.421 15.12 0.00 45.88 3.53
7080 25315 1.934870 ACTCGGGGGAGTCTAGGGT 60.935 63.158 0.00 0.00 0.00 4.34
7081 25316 1.310373 CTCGGGGGAGTCTAGGGTT 59.690 63.158 0.00 0.00 0.00 4.11
7082 25317 0.325390 CTCGGGGGAGTCTAGGGTTT 60.325 60.000 0.00 0.00 0.00 3.27
7083 25318 0.117742 TCGGGGGAGTCTAGGGTTTT 59.882 55.000 0.00 0.00 0.00 2.43
7085 25320 0.917533 GGGGGAGTCTAGGGTTTTCC 59.082 60.000 0.00 0.00 39.75 3.13
7096 25331 4.050934 GTTTTCCCCCGCCGCAAG 62.051 66.667 0.00 0.00 0.00 4.01
7138 26626 3.984200 GAGACGACCGCCGGGAAAG 62.984 68.421 8.57 0.00 43.93 2.62
7186 26674 4.083862 GGGTCTTCGGCGCTCCTT 62.084 66.667 7.64 0.00 0.00 3.36
7189 26677 1.079750 GTCTTCGGCGCTCCTTTCT 60.080 57.895 7.64 0.00 0.00 2.52
7190 26678 1.079317 GTCTTCGGCGCTCCTTTCTC 61.079 60.000 7.64 0.00 0.00 2.87
7191 26679 2.126071 TTCGGCGCTCCTTTCTCG 60.126 61.111 7.64 0.00 0.00 4.04
7195 26683 4.796231 GCGCTCCTTTCTCGCGGA 62.796 66.667 6.13 0.00 46.31 5.54
7198 26686 2.202810 CTCCTTTCTCGCGGAGGC 60.203 66.667 6.13 0.00 42.46 4.70
7199 26687 3.724914 CTCCTTTCTCGCGGAGGCC 62.725 68.421 6.13 0.00 42.46 5.19
7200 26688 4.840005 CCTTTCTCGCGGAGGCCC 62.840 72.222 6.13 0.00 35.02 5.80
7210 26698 3.237741 GGAGGCCCTCGGATCCAG 61.238 72.222 13.41 8.30 32.52 3.86
7262 26750 4.115199 GCCTGAGGGTTCGGCCAT 62.115 66.667 2.24 0.00 39.65 4.40
7263 26751 2.124570 CCTGAGGGTTCGGCCATG 60.125 66.667 2.24 0.00 39.65 3.66
7264 26752 2.669133 CCTGAGGGTTCGGCCATGA 61.669 63.158 2.24 0.00 39.65 3.07
7265 26753 1.153289 CTGAGGGTTCGGCCATGAG 60.153 63.158 2.24 0.00 39.65 2.90
7266 26754 2.190578 GAGGGTTCGGCCATGAGG 59.809 66.667 2.24 0.00 39.65 3.86
7267 26755 2.285368 AGGGTTCGGCCATGAGGA 60.285 61.111 2.24 0.00 39.65 3.71
7268 26756 2.124695 GGGTTCGGCCATGAGGAC 60.125 66.667 2.24 0.00 40.75 3.85
7276 26764 4.899239 CCATGAGGACGGCGAGCC 62.899 72.222 16.62 15.00 36.89 4.70
7317 26805 2.202932 CGGATCTTCCCGTGCCAG 60.203 66.667 0.00 0.00 44.23 4.85
7318 26806 2.721167 CGGATCTTCCCGTGCCAGA 61.721 63.158 0.00 0.00 44.23 3.86
7319 26807 1.832912 GGATCTTCCCGTGCCAGAT 59.167 57.895 0.00 0.00 0.00 2.90
7320 26808 0.250081 GGATCTTCCCGTGCCAGATC 60.250 60.000 0.00 0.00 41.54 2.75
7321 26809 0.755686 GATCTTCCCGTGCCAGATCT 59.244 55.000 0.00 0.00 39.87 2.75
7322 26810 0.467384 ATCTTCCCGTGCCAGATCTG 59.533 55.000 16.24 16.24 0.00 2.90
7335 26823 2.843701 CAGATCTGGAGGTATTGCCAC 58.156 52.381 15.38 0.00 40.61 5.01
7336 26824 1.771255 AGATCTGGAGGTATTGCCACC 59.229 52.381 0.00 0.22 46.70 4.61
7337 26825 0.846693 ATCTGGAGGTATTGCCACCC 59.153 55.000 4.88 0.69 46.06 4.61
7338 26826 0.548926 TCTGGAGGTATTGCCACCCA 60.549 55.000 4.88 5.05 46.06 4.51
7339 26827 0.394352 CTGGAGGTATTGCCACCCAC 60.394 60.000 4.88 0.00 46.06 4.61
7340 26828 1.076995 GGAGGTATTGCCACCCACC 60.077 63.158 0.00 0.00 41.51 4.61
7341 26829 1.076995 GAGGTATTGCCACCCACCC 60.077 63.158 0.00 0.00 39.62 4.61
7342 26830 1.543896 AGGTATTGCCACCCACCCT 60.544 57.895 0.00 0.00 39.62 4.34
7343 26831 1.146544 AGGTATTGCCACCCACCCTT 61.147 55.000 0.00 0.00 39.62 3.95
7344 26832 0.683179 GGTATTGCCACCCACCCTTC 60.683 60.000 0.00 0.00 37.17 3.46
7345 26833 0.683179 GTATTGCCACCCACCCTTCC 60.683 60.000 0.00 0.00 0.00 3.46
7346 26834 1.143329 TATTGCCACCCACCCTTCCA 61.143 55.000 0.00 0.00 0.00 3.53
7347 26835 1.814292 ATTGCCACCCACCCTTCCAT 61.814 55.000 0.00 0.00 0.00 3.41
7348 26836 2.362889 GCCACCCACCCTTCCATG 60.363 66.667 0.00 0.00 0.00 3.66
7349 26837 2.362889 CCACCCACCCTTCCATGC 60.363 66.667 0.00 0.00 0.00 4.06
7350 26838 2.440147 CACCCACCCTTCCATGCA 59.560 61.111 0.00 0.00 0.00 3.96
7351 26839 1.000739 CACCCACCCTTCCATGCAT 59.999 57.895 0.00 0.00 0.00 3.96
7352 26840 1.039233 CACCCACCCTTCCATGCATC 61.039 60.000 0.00 0.00 0.00 3.91
7353 26841 1.456331 CCCACCCTTCCATGCATCC 60.456 63.158 0.00 0.00 0.00 3.51
7354 26842 1.456331 CCACCCTTCCATGCATCCC 60.456 63.158 0.00 0.00 0.00 3.85
7355 26843 1.616921 CACCCTTCCATGCATCCCT 59.383 57.895 0.00 0.00 0.00 4.20
7356 26844 0.032813 CACCCTTCCATGCATCCCTT 60.033 55.000 0.00 0.00 0.00 3.95
7357 26845 0.259938 ACCCTTCCATGCATCCCTTC 59.740 55.000 0.00 0.00 0.00 3.46
7358 26846 0.468771 CCCTTCCATGCATCCCTTCC 60.469 60.000 0.00 0.00 0.00 3.46
7359 26847 0.468771 CCTTCCATGCATCCCTTCCC 60.469 60.000 0.00 0.00 0.00 3.97
7360 26848 0.259647 CTTCCATGCATCCCTTCCCA 59.740 55.000 0.00 0.00 0.00 4.37
7361 26849 0.259647 TTCCATGCATCCCTTCCCAG 59.740 55.000 0.00 0.00 0.00 4.45
7362 26850 0.920763 TCCATGCATCCCTTCCCAGT 60.921 55.000 0.00 0.00 0.00 4.00
7363 26851 0.466922 CCATGCATCCCTTCCCAGTC 60.467 60.000 0.00 0.00 0.00 3.51
7364 26852 0.466922 CATGCATCCCTTCCCAGTCC 60.467 60.000 0.00 0.00 0.00 3.85
7365 26853 1.649271 ATGCATCCCTTCCCAGTCCC 61.649 60.000 0.00 0.00 0.00 4.46
7366 26854 3.061905 GCATCCCTTCCCAGTCCCC 62.062 68.421 0.00 0.00 0.00 4.81
7367 26855 2.366972 ATCCCTTCCCAGTCCCCG 60.367 66.667 0.00 0.00 0.00 5.73
7368 26856 4.733725 TCCCTTCCCAGTCCCCGG 62.734 72.222 0.00 0.00 0.00 5.73
7370 26858 2.933834 CCTTCCCAGTCCCCGGTT 60.934 66.667 0.00 0.00 0.00 4.44
7371 26859 2.669240 CTTCCCAGTCCCCGGTTC 59.331 66.667 0.00 0.00 0.00 3.62
7372 26860 3.310860 CTTCCCAGTCCCCGGTTCG 62.311 68.421 0.00 0.00 0.00 3.95
7375 26863 3.633116 CCAGTCCCCGGTTCGGTT 61.633 66.667 0.00 0.00 46.80 4.44
7376 26864 2.428622 CAGTCCCCGGTTCGGTTT 59.571 61.111 0.00 0.00 46.80 3.27
7377 26865 1.228033 CAGTCCCCGGTTCGGTTTT 60.228 57.895 0.00 0.00 46.80 2.43
7378 26866 1.228033 AGTCCCCGGTTCGGTTTTG 60.228 57.895 0.00 0.00 46.80 2.44
7379 26867 2.113562 TCCCCGGTTCGGTTTTGG 59.886 61.111 0.00 0.00 46.80 3.28
7380 26868 2.113562 CCCCGGTTCGGTTTTGGA 59.886 61.111 0.00 0.00 46.80 3.53
7381 26869 1.303806 CCCCGGTTCGGTTTTGGAT 60.304 57.895 0.00 0.00 46.80 3.41
7382 26870 1.310216 CCCCGGTTCGGTTTTGGATC 61.310 60.000 0.00 0.00 46.80 3.36
7383 26871 0.322187 CCCGGTTCGGTTTTGGATCT 60.322 55.000 0.00 0.00 46.80 2.75
7384 26872 1.530323 CCGGTTCGGTTTTGGATCTT 58.470 50.000 0.00 0.00 42.73 2.40
7385 26873 1.199097 CCGGTTCGGTTTTGGATCTTG 59.801 52.381 0.00 0.00 42.73 3.02
7386 26874 1.401018 CGGTTCGGTTTTGGATCTTGC 60.401 52.381 0.00 0.00 0.00 4.01
7387 26875 1.067846 GGTTCGGTTTTGGATCTTGCC 60.068 52.381 0.00 0.00 0.00 4.52
7388 26876 0.878416 TTCGGTTTTGGATCTTGCCG 59.122 50.000 0.00 0.00 40.43 5.69
7389 26877 0.958382 TCGGTTTTGGATCTTGCCGG 60.958 55.000 0.00 0.00 39.64 6.13
7390 26878 0.958382 CGGTTTTGGATCTTGCCGGA 60.958 55.000 5.05 0.00 36.05 5.14
7391 26879 1.474330 GGTTTTGGATCTTGCCGGAT 58.526 50.000 5.05 0.00 0.00 4.18
7392 26880 1.405463 GGTTTTGGATCTTGCCGGATC 59.595 52.381 5.05 0.00 40.78 3.36
7398 26886 2.091852 GATCTTGCCGGATCCATCTC 57.908 55.000 13.41 0.00 36.91 2.75
7399 26887 1.622811 GATCTTGCCGGATCCATCTCT 59.377 52.381 13.41 0.00 36.91 3.10
7400 26888 0.755079 TCTTGCCGGATCCATCTCTG 59.245 55.000 13.41 0.00 0.00 3.35
7401 26889 0.250209 CTTGCCGGATCCATCTCTGG 60.250 60.000 13.41 4.55 43.50 3.86
7402 26890 0.982852 TTGCCGGATCCATCTCTGGT 60.983 55.000 13.41 0.00 42.73 4.00
7403 26891 1.070445 GCCGGATCCATCTCTGGTG 59.930 63.158 13.41 0.00 42.73 4.17
7404 26892 1.690219 GCCGGATCCATCTCTGGTGT 61.690 60.000 13.41 0.00 42.73 4.16
7405 26893 0.105593 CCGGATCCATCTCTGGTGTG 59.894 60.000 13.41 0.00 43.61 3.82
7406 26894 0.826715 CGGATCCATCTCTGGTGTGT 59.173 55.000 13.41 0.00 43.61 3.72
7407 26895 1.208052 CGGATCCATCTCTGGTGTGTT 59.792 52.381 13.41 0.00 43.61 3.32
7408 26896 2.739932 CGGATCCATCTCTGGTGTGTTC 60.740 54.545 13.41 0.00 43.61 3.18
7409 26897 2.503356 GGATCCATCTCTGGTGTGTTCT 59.497 50.000 6.95 0.00 43.61 3.01
7410 26898 3.529533 GATCCATCTCTGGTGTGTTCTG 58.470 50.000 0.00 0.00 43.61 3.02
7411 26899 1.625315 TCCATCTCTGGTGTGTTCTGG 59.375 52.381 0.00 0.00 43.61 3.86
7412 26900 1.349026 CCATCTCTGGTGTGTTCTGGT 59.651 52.381 0.00 0.00 37.79 4.00
7413 26901 2.420642 CATCTCTGGTGTGTTCTGGTG 58.579 52.381 0.00 0.00 0.00 4.17
7421 26909 1.059098 TGTGTTCTGGTGGAGCAGAT 58.941 50.000 9.26 0.00 35.89 2.90
7425 26913 0.904865 TTCTGGTGGAGCAGATCGGT 60.905 55.000 9.26 0.00 0.00 4.69
7427 26915 1.892819 CTGGTGGAGCAGATCGGTGT 61.893 60.000 0.00 0.00 0.00 4.16
7428 26916 1.153549 GGTGGAGCAGATCGGTGTC 60.154 63.158 0.00 0.00 0.00 3.67
7450 26938 2.118294 GGAAACCTTGGCTGGCCT 59.882 61.111 13.05 0.00 36.94 5.19
7451 26939 1.979155 GGAAACCTTGGCTGGCCTC 60.979 63.158 13.05 0.00 36.94 4.70
7453 26941 0.827507 GAAACCTTGGCTGGCCTCAA 60.828 55.000 13.05 5.44 36.94 3.02
7456 26944 3.058160 CTTGGCTGGCCTCAACGG 61.058 66.667 13.05 0.00 36.94 4.44
7457 26945 3.551496 CTTGGCTGGCCTCAACGGA 62.551 63.158 13.05 0.00 36.94 4.69
7458 26946 2.826777 CTTGGCTGGCCTCAACGGAT 62.827 60.000 13.05 0.00 36.94 4.18
7459 26947 2.514824 GGCTGGCCTCAACGGATC 60.515 66.667 3.32 0.00 33.16 3.36
7462 26950 1.299648 CTGGCCTCAACGGATCCAA 59.700 57.895 13.41 0.00 33.16 3.53
7463 26951 0.745845 CTGGCCTCAACGGATCCAAG 60.746 60.000 13.41 3.10 33.16 3.61
7464 26952 1.198094 TGGCCTCAACGGATCCAAGA 61.198 55.000 13.41 5.10 33.16 3.02
7465 26953 0.462759 GGCCTCAACGGATCCAAGAG 60.463 60.000 13.41 14.34 33.16 2.85
7466 26954 1.092345 GCCTCAACGGATCCAAGAGC 61.092 60.000 13.41 2.60 33.16 4.09
7467 26955 0.539051 CCTCAACGGATCCAAGAGCT 59.461 55.000 13.41 0.00 33.16 4.09
7468 26956 1.649664 CTCAACGGATCCAAGAGCTG 58.350 55.000 13.41 0.00 0.00 4.24
7469 26957 0.391661 TCAACGGATCCAAGAGCTGC 60.392 55.000 13.41 0.00 0.00 5.25
7472 26960 1.880340 CGGATCCAAGAGCTGCGAC 60.880 63.158 13.41 0.00 0.00 5.19
7473 26961 1.880340 GGATCCAAGAGCTGCGACG 60.880 63.158 6.95 0.00 0.00 5.12
7475 26963 3.376935 ATCCAAGAGCTGCGACGGG 62.377 63.158 0.00 1.26 0.00 5.28
7486 26974 4.069232 CGACGGGCCTCTGCAAGA 62.069 66.667 0.84 0.00 43.69 3.02
7495 26983 4.441695 TCTGCAAGAGCCGGAGCG 62.442 66.667 5.05 0.00 46.67 5.03
7497 26985 3.729965 CTGCAAGAGCCGGAGCGAT 62.730 63.158 5.05 0.00 46.67 4.58
7498 26986 3.267860 GCAAGAGCCGGAGCGATG 61.268 66.667 5.05 2.04 46.67 3.84
7537 27025 4.954933 GCATTCCTGCCGGAGTTA 57.045 55.556 5.05 0.00 42.88 2.24
7538 27026 2.695314 GCATTCCTGCCGGAGTTAG 58.305 57.895 5.05 0.00 42.88 2.34
7539 27027 0.178068 GCATTCCTGCCGGAGTTAGA 59.822 55.000 5.05 0.00 42.88 2.10
7540 27028 1.941325 CATTCCTGCCGGAGTTAGAC 58.059 55.000 5.05 0.00 41.25 2.59
7541 27029 0.831307 ATTCCTGCCGGAGTTAGACC 59.169 55.000 5.05 0.00 41.25 3.85
7542 27030 1.262640 TTCCTGCCGGAGTTAGACCC 61.263 60.000 5.05 0.00 41.25 4.46
7543 27031 2.494918 CTGCCGGAGTTAGACCCG 59.505 66.667 5.05 0.00 44.94 5.28
7552 27040 1.227176 GTTAGACCCGGCGGACATC 60.227 63.158 30.79 21.11 0.00 3.06
7553 27041 2.777972 TTAGACCCGGCGGACATCG 61.778 63.158 30.79 13.10 42.76 3.84
7582 27070 2.797177 ATCCAAGCCTGAAGGAAGAC 57.203 50.000 0.00 0.00 37.39 3.01
7583 27071 0.321671 TCCAAGCCTGAAGGAAGACG 59.678 55.000 0.00 0.00 37.39 4.18
7584 27072 0.674895 CCAAGCCTGAAGGAAGACGG 60.675 60.000 0.00 0.00 37.39 4.79
7587 27075 1.448717 GCCTGAAGGAAGACGGCTC 60.449 63.158 0.00 0.00 37.76 4.70
7588 27076 1.975327 CCTGAAGGAAGACGGCTCA 59.025 57.895 0.00 0.00 37.39 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 9.761504 TGAACATTTTAAATGTGTGATGAACAT 57.238 25.926 21.90 4.35 41.97 2.71
242 265 5.747565 ACATATTGTTGAACGTGTGAACAG 58.252 37.500 0.00 0.00 31.50 3.16
456 505 9.415544 GTAAGACGGTTTTGAGTAGATTCTTTA 57.584 33.333 0.00 0.00 0.00 1.85
468 517 1.418637 AGCCCAGTAAGACGGTTTTGA 59.581 47.619 0.00 0.00 0.00 2.69
506 555 3.640257 CTCTGGCACTGGGCTGCAT 62.640 63.158 0.21 0.00 44.01 3.96
536 585 3.990092 TGTGTCACGAGATGTAGCTTTT 58.010 40.909 0.00 0.00 0.00 2.27
551 600 0.761802 TGTACATGGGTGCTGTGTCA 59.238 50.000 0.00 0.00 0.00 3.58
569 627 6.671190 TCACATCTCAACAGTGCTTATTTTG 58.329 36.000 0.00 0.00 33.44 2.44
591 649 1.202592 TGCAGTTCGTTTGGTAGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
620 678 3.047877 GAAACGCCGTGACTGGGG 61.048 66.667 0.00 8.46 46.74 4.96
625 683 0.028902 AAAAGCTGAAACGCCGTGAC 59.971 50.000 0.00 0.00 0.00 3.67
643 701 2.198406 GTCGCGCCATGAAGTATGTAA 58.802 47.619 0.00 0.00 34.87 2.41
723 781 7.672983 TTCTTACAAAGCAAGAGATACCAAG 57.327 36.000 0.00 0.00 33.72 3.61
726 784 7.402640 CGAATTCTTACAAAGCAAGAGATACC 58.597 38.462 3.52 0.00 33.72 2.73
728 786 6.037172 GGCGAATTCTTACAAAGCAAGAGATA 59.963 38.462 3.52 0.00 33.72 1.98
736 794 2.488153 AGGTGGCGAATTCTTACAAAGC 59.512 45.455 3.52 0.00 0.00 3.51
791 853 6.129300 CGTTCCAAATTTCGTTGTTCCATAAC 60.129 38.462 0.00 0.00 36.07 1.89
977 1044 5.451659 GGGGAGTACGAAGTCTTTTCCTATC 60.452 48.000 0.00 0.00 43.93 2.08
1181 1249 4.596585 CAACCACCCCCGCCACTT 62.597 66.667 0.00 0.00 0.00 3.16
1290 1358 2.202756 CTGGCCTCGCGGAAGTAC 60.203 66.667 6.13 0.00 0.00 2.73
1383 1455 1.740664 GGGCGGACGGAAGAGAAAC 60.741 63.158 0.00 0.00 0.00 2.78
1607 1804 4.598894 CTCCGCGCTCATCTGGGG 62.599 72.222 5.56 0.00 39.40 4.96
1639 1837 2.315038 GAAGCCTCGGCAATTCGCAG 62.315 60.000 11.02 0.00 45.17 5.18
1734 1933 1.374758 CAGACCCAGCTCCAACGAC 60.375 63.158 0.00 0.00 0.00 4.34
1760 1959 0.322008 CCTGCCTCTTGGTCTTGGAC 60.322 60.000 0.00 0.00 35.27 4.02
1921 2135 0.247460 TGCATTGTCGACTCCAGAGG 59.753 55.000 17.92 0.89 0.00 3.69
1966 2180 1.484227 TTACAGTCACACGCGCACAC 61.484 55.000 5.73 0.00 0.00 3.82
2031 2245 0.674895 CCCTTCCGCTCTGTTTGAGG 60.675 60.000 0.00 0.00 42.87 3.86
2032 2246 0.321671 TCCCTTCCGCTCTGTTTGAG 59.678 55.000 0.00 0.00 45.33 3.02
2033 2247 0.762418 TTCCCTTCCGCTCTGTTTGA 59.238 50.000 0.00 0.00 0.00 2.69
2034 2248 1.266989 GTTTCCCTTCCGCTCTGTTTG 59.733 52.381 0.00 0.00 0.00 2.93
2044 2258 4.279922 TCGGATTTTTCTTGTTTCCCTTCC 59.720 41.667 0.00 0.00 0.00 3.46
2098 2322 6.403092 GCTTTTCAAGAATAGTTCTGCTCCTC 60.403 42.308 2.97 0.00 40.59 3.71
2112 2337 3.074390 TCCTGATGGAGGCTTTTCAAGAA 59.926 43.478 0.00 0.00 42.47 2.52
2143 2368 0.708209 TGGGGGCTAGTGAGTGTAGA 59.292 55.000 0.00 0.00 0.00 2.59
2186 2411 6.237154 AGAAACAAGAGGATTTTCAGAGAGG 58.763 40.000 0.00 0.00 32.62 3.69
2224 2451 1.467734 GCTGTAGCTGCATGGCATATC 59.532 52.381 4.51 0.00 38.13 1.63
2377 2604 3.942130 AAAGAGGTATGGTTGCTTTGC 57.058 42.857 0.00 0.00 0.00 3.68
2378 2605 4.458989 TGCTAAAGAGGTATGGTTGCTTTG 59.541 41.667 0.00 0.00 31.85 2.77
2379 2606 4.662278 TGCTAAAGAGGTATGGTTGCTTT 58.338 39.130 0.00 0.00 33.76 3.51
2380 2607 4.301072 TGCTAAAGAGGTATGGTTGCTT 57.699 40.909 0.00 0.00 0.00 3.91
2490 2717 1.286248 ATATTATGGGGACGGAGGGC 58.714 55.000 0.00 0.00 0.00 5.19
2520 2747 7.496591 TCCGTTCCATAATATAAGAGCGTTTTT 59.503 33.333 7.53 0.00 32.01 1.94
2521 2748 6.987992 TCCGTTCCATAATATAAGAGCGTTTT 59.012 34.615 7.53 0.00 32.01 2.43
2522 2749 6.518493 TCCGTTCCATAATATAAGAGCGTTT 58.482 36.000 7.53 0.00 32.01 3.60
2523 2750 6.092955 TCCGTTCCATAATATAAGAGCGTT 57.907 37.500 7.53 0.00 32.01 4.84
2524 2751 5.336531 CCTCCGTTCCATAATATAAGAGCGT 60.337 44.000 7.53 0.00 32.01 5.07
2525 2752 5.103000 CCTCCGTTCCATAATATAAGAGCG 58.897 45.833 3.06 3.06 33.46 5.03
2526 2753 5.187186 TCCCTCCGTTCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
2527 2754 6.437793 ACTCCCTCCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
2528 2755 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
2529 2756 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2530 2757 7.243824 ACTACTCCCTCCGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
2583 2815 3.058501 GCGCGGCTATACCAAAAACATAT 60.059 43.478 8.83 0.00 39.03 1.78
2610 2842 8.748412 AGTGCAGCCACATTTTATTTTAGAATA 58.252 29.630 0.00 0.00 44.53 1.75
2614 2846 7.538575 AGTAGTGCAGCCACATTTTATTTTAG 58.461 34.615 0.00 0.00 44.53 1.85
2620 2852 5.782893 AAAAGTAGTGCAGCCACATTTTA 57.217 34.783 0.00 0.00 44.53 1.52
2645 2878 2.955660 TGGTACAGCCACTTTTTCAAGG 59.044 45.455 0.00 0.00 43.61 3.61
2856 3089 3.008375 TGCTCAACAGAGGAAAGCTACAT 59.992 43.478 0.00 0.00 34.11 2.29
3333 6039 6.018669 GCCGGAGAACTATAGAATTTGTTCTG 60.019 42.308 5.05 0.51 45.95 3.02
3444 6151 0.462047 GACACGTGCAATAGGAGGGG 60.462 60.000 17.22 0.00 0.00 4.79
3613 6378 2.872557 CTGCAGTTGGGCGTCATG 59.127 61.111 5.25 0.00 36.28 3.07
3795 6562 8.202461 TCACTTTAAGGATCAAACTAAGAGGA 57.798 34.615 0.00 0.00 0.00 3.71
4290 12309 6.560253 TTCTAAGATTTTGCTTCACCTCAC 57.440 37.500 0.00 0.00 0.00 3.51
4291 12310 7.094205 GGAATTCTAAGATTTTGCTTCACCTCA 60.094 37.037 5.23 0.00 0.00 3.86
4292 12311 7.094205 TGGAATTCTAAGATTTTGCTTCACCTC 60.094 37.037 5.23 0.00 0.00 3.85
4293 12312 6.721208 TGGAATTCTAAGATTTTGCTTCACCT 59.279 34.615 5.23 0.00 0.00 4.00
4294 12313 6.924111 TGGAATTCTAAGATTTTGCTTCACC 58.076 36.000 5.23 0.00 0.00 4.02
5101 16333 3.259374 ACAACACAAAACACATGGTCCAA 59.741 39.130 0.00 0.00 0.00 3.53
5160 16396 3.492102 TCTAGCTGAGGCAACAGTTTT 57.508 42.857 0.00 3.47 41.70 2.43
6624 21540 7.289084 ACAGTGGGTAAGAAACAAAATTACCAT 59.711 33.333 13.64 0.00 46.78 3.55
6691 21608 5.423886 GGAAGGAATCTCACCTAGAACAAG 58.576 45.833 0.00 0.00 37.89 3.16
6692 21609 4.081642 CGGAAGGAATCTCACCTAGAACAA 60.082 45.833 0.00 0.00 37.89 2.83
6693 21610 3.447586 CGGAAGGAATCTCACCTAGAACA 59.552 47.826 0.00 0.00 37.89 3.18
6714 21631 0.179056 AGACCACCACAGGACAAACG 60.179 55.000 0.00 0.00 0.00 3.60
7014 25249 3.078837 GACGAGGGAATTTGGCTTACAA 58.921 45.455 0.00 0.00 37.28 2.41
7016 25251 2.014857 GGACGAGGGAATTTGGCTTAC 58.985 52.381 0.00 0.00 0.00 2.34
7017 25252 1.064979 GGGACGAGGGAATTTGGCTTA 60.065 52.381 0.00 0.00 0.00 3.09
7018 25253 0.323451 GGGACGAGGGAATTTGGCTT 60.323 55.000 0.00 0.00 0.00 4.35
7020 25255 3.920031 GGGACGAGGGAATTTGGC 58.080 61.111 0.00 0.00 0.00 4.52
7054 25289 4.517934 TCCCCCGAGTCGCCCTAG 62.518 72.222 7.12 0.00 0.00 3.02
7055 25290 4.517934 CTCCCCCGAGTCGCCCTA 62.518 72.222 7.12 0.00 0.00 3.53
7063 25298 0.325390 AAACCCTAGACTCCCCCGAG 60.325 60.000 0.00 0.00 42.32 4.63
7065 25300 0.540454 GAAAACCCTAGACTCCCCCG 59.460 60.000 0.00 0.00 0.00 5.73
7066 25301 0.917533 GGAAAACCCTAGACTCCCCC 59.082 60.000 0.00 0.00 0.00 5.40
7067 25302 0.917533 GGGAAAACCCTAGACTCCCC 59.082 60.000 0.00 0.00 40.02 4.81
7079 25314 4.050934 CTTGCGGCGGGGGAAAAC 62.051 66.667 9.78 0.00 0.00 2.43
7169 26657 3.607370 AAAGGAGCGCCGAAGACCC 62.607 63.158 2.29 0.00 39.96 4.46
7171 26659 1.079317 GAGAAAGGAGCGCCGAAGAC 61.079 60.000 2.29 0.00 39.96 3.01
7172 26660 1.215647 GAGAAAGGAGCGCCGAAGA 59.784 57.895 2.29 0.00 39.96 2.87
7173 26661 2.161486 CGAGAAAGGAGCGCCGAAG 61.161 63.158 2.29 0.00 39.96 3.79
7175 26663 4.796231 GCGAGAAAGGAGCGCCGA 62.796 66.667 2.29 0.00 44.55 5.54
7180 26668 2.202810 CCTCCGCGAGAAAGGAGC 60.203 66.667 8.23 0.00 43.96 4.70
7181 26669 2.202810 GCCTCCGCGAGAAAGGAG 60.203 66.667 8.23 3.94 43.96 3.69
7182 26670 3.771160 GGCCTCCGCGAGAAAGGA 61.771 66.667 8.23 0.00 36.35 3.36
7184 26672 3.724914 GAGGGCCTCCGCGAGAAAG 62.725 68.421 23.49 0.00 38.33 2.62
7193 26681 3.237741 CTGGATCCGAGGGCCTCC 61.238 72.222 27.36 14.73 0.00 4.30
7195 26683 4.888325 CCCTGGATCCGAGGGCCT 62.888 72.222 26.77 5.25 44.02 5.19
7246 26734 2.124570 CATGGCCGAACCCTCAGG 60.125 66.667 0.00 0.00 37.83 3.86
7247 26735 1.153289 CTCATGGCCGAACCCTCAG 60.153 63.158 0.00 0.00 37.83 3.35
7248 26736 2.669133 CCTCATGGCCGAACCCTCA 61.669 63.158 0.00 0.00 37.83 3.86
7249 26737 2.190578 CCTCATGGCCGAACCCTC 59.809 66.667 0.00 0.00 37.83 4.30
7250 26738 2.285368 TCCTCATGGCCGAACCCT 60.285 61.111 0.00 0.00 37.83 4.34
7251 26739 2.124695 GTCCTCATGGCCGAACCC 60.125 66.667 0.00 0.00 37.83 4.11
7252 26740 2.511600 CGTCCTCATGGCCGAACC 60.512 66.667 0.00 0.00 39.84 3.62
7253 26741 2.511600 CCGTCCTCATGGCCGAAC 60.512 66.667 0.00 0.00 0.00 3.95
7259 26747 4.899239 GGCTCGCCGTCCTCATGG 62.899 72.222 0.00 0.00 0.00 3.66
7275 26763 4.742201 CTCGACCACCACCTGCGG 62.742 72.222 0.00 0.00 0.00 5.69
7301 26789 0.250081 GATCTGGCACGGGAAGATCC 60.250 60.000 16.18 0.00 40.20 3.36
7302 26790 0.755686 AGATCTGGCACGGGAAGATC 59.244 55.000 18.32 18.32 44.39 2.75
7303 26791 0.467384 CAGATCTGGCACGGGAAGAT 59.533 55.000 15.38 3.17 33.36 2.40
7304 26792 1.617018 CCAGATCTGGCACGGGAAGA 61.617 60.000 28.45 0.00 44.73 2.87
7305 26793 1.153289 CCAGATCTGGCACGGGAAG 60.153 63.158 28.45 2.08 44.73 3.46
7306 26794 2.989639 CCAGATCTGGCACGGGAA 59.010 61.111 28.45 0.00 44.73 3.97
7313 26801 4.141467 TGGCAATACCTCCAGATCTGGC 62.141 54.545 33.39 19.77 43.02 4.85
7314 26802 1.770658 TGGCAATACCTCCAGATCTGG 59.229 52.381 32.60 32.60 44.01 3.86
7315 26803 2.843701 GTGGCAATACCTCCAGATCTG 58.156 52.381 16.24 16.24 40.22 2.90
7323 26811 1.076995 GGGTGGGTGGCAATACCTC 60.077 63.158 13.58 6.78 40.66 3.85
7324 26812 1.146544 AAGGGTGGGTGGCAATACCT 61.147 55.000 13.58 4.34 40.66 3.08
7325 26813 0.683179 GAAGGGTGGGTGGCAATACC 60.683 60.000 7.35 7.35 40.10 2.73
7326 26814 0.683179 GGAAGGGTGGGTGGCAATAC 60.683 60.000 0.00 0.00 0.00 1.89
7327 26815 1.143329 TGGAAGGGTGGGTGGCAATA 61.143 55.000 0.00 0.00 0.00 1.90
7328 26816 1.814292 ATGGAAGGGTGGGTGGCAAT 61.814 55.000 0.00 0.00 0.00 3.56
7329 26817 2.477893 ATGGAAGGGTGGGTGGCAA 61.478 57.895 0.00 0.00 0.00 4.52
7330 26818 2.863484 ATGGAAGGGTGGGTGGCA 60.863 61.111 0.00 0.00 0.00 4.92
7331 26819 2.362889 CATGGAAGGGTGGGTGGC 60.363 66.667 0.00 0.00 0.00 5.01
7332 26820 2.362889 GCATGGAAGGGTGGGTGG 60.363 66.667 0.00 0.00 0.00 4.61
7333 26821 1.000739 ATGCATGGAAGGGTGGGTG 59.999 57.895 0.00 0.00 0.00 4.61
7334 26822 1.307647 GATGCATGGAAGGGTGGGT 59.692 57.895 2.46 0.00 0.00 4.51
7335 26823 1.456331 GGATGCATGGAAGGGTGGG 60.456 63.158 2.46 0.00 0.00 4.61
7336 26824 1.456331 GGGATGCATGGAAGGGTGG 60.456 63.158 2.46 0.00 0.00 4.61
7337 26825 0.032813 AAGGGATGCATGGAAGGGTG 60.033 55.000 2.46 0.00 0.00 4.61
7338 26826 0.259938 GAAGGGATGCATGGAAGGGT 59.740 55.000 2.46 0.00 0.00 4.34
7339 26827 0.468771 GGAAGGGATGCATGGAAGGG 60.469 60.000 2.46 0.00 0.00 3.95
7340 26828 0.468771 GGGAAGGGATGCATGGAAGG 60.469 60.000 2.46 0.00 0.00 3.46
7341 26829 0.259647 TGGGAAGGGATGCATGGAAG 59.740 55.000 2.46 0.00 0.00 3.46
7342 26830 0.259647 CTGGGAAGGGATGCATGGAA 59.740 55.000 2.46 0.00 0.00 3.53
7343 26831 0.920763 ACTGGGAAGGGATGCATGGA 60.921 55.000 2.46 0.00 0.00 3.41
7344 26832 0.466922 GACTGGGAAGGGATGCATGG 60.467 60.000 2.46 0.00 0.00 3.66
7345 26833 0.466922 GGACTGGGAAGGGATGCATG 60.467 60.000 2.46 0.00 0.00 4.06
7346 26834 1.649271 GGGACTGGGAAGGGATGCAT 61.649 60.000 0.00 0.00 0.00 3.96
7347 26835 2.308722 GGGACTGGGAAGGGATGCA 61.309 63.158 0.00 0.00 0.00 3.96
7348 26836 2.597903 GGGACTGGGAAGGGATGC 59.402 66.667 0.00 0.00 0.00 3.91
7349 26837 2.746375 CGGGGACTGGGAAGGGATG 61.746 68.421 0.00 0.00 0.00 3.51
7350 26838 2.366972 CGGGGACTGGGAAGGGAT 60.367 66.667 0.00 0.00 0.00 3.85
7366 26854 1.401018 GCAAGATCCAAAACCGAACCG 60.401 52.381 0.00 0.00 0.00 4.44
7367 26855 1.067846 GGCAAGATCCAAAACCGAACC 60.068 52.381 0.00 0.00 0.00 3.62
7368 26856 1.401018 CGGCAAGATCCAAAACCGAAC 60.401 52.381 4.73 0.00 43.19 3.95
7369 26857 0.878416 CGGCAAGATCCAAAACCGAA 59.122 50.000 4.73 0.00 43.19 4.30
7370 26858 0.958382 CCGGCAAGATCCAAAACCGA 60.958 55.000 10.70 0.00 43.19 4.69
7371 26859 0.958382 TCCGGCAAGATCCAAAACCG 60.958 55.000 0.00 0.00 40.30 4.44
7372 26860 1.405463 GATCCGGCAAGATCCAAAACC 59.595 52.381 0.00 0.00 37.31 3.27
7373 26861 2.851805 GATCCGGCAAGATCCAAAAC 57.148 50.000 0.00 0.00 37.31 2.43
7379 26867 1.622811 AGAGATGGATCCGGCAAGATC 59.377 52.381 7.39 3.28 41.69 2.75
7380 26868 1.347050 CAGAGATGGATCCGGCAAGAT 59.653 52.381 7.39 0.00 0.00 2.40
7381 26869 0.755079 CAGAGATGGATCCGGCAAGA 59.245 55.000 7.39 0.00 0.00 3.02
7382 26870 0.250209 CCAGAGATGGATCCGGCAAG 60.250 60.000 7.39 0.00 0.00 4.01
7383 26871 0.982852 ACCAGAGATGGATCCGGCAA 60.983 55.000 7.39 0.00 0.00 4.52
7384 26872 1.383109 ACCAGAGATGGATCCGGCA 60.383 57.895 7.39 0.00 0.00 5.69
7385 26873 1.070445 CACCAGAGATGGATCCGGC 59.930 63.158 7.39 0.94 0.00 6.13
7386 26874 0.105593 CACACCAGAGATGGATCCGG 59.894 60.000 7.39 3.23 0.00 5.14
7387 26875 0.826715 ACACACCAGAGATGGATCCG 59.173 55.000 7.39 0.00 0.00 4.18
7388 26876 2.503356 AGAACACACCAGAGATGGATCC 59.497 50.000 4.20 4.20 0.00 3.36
7389 26877 3.529533 CAGAACACACCAGAGATGGATC 58.470 50.000 0.31 0.00 0.00 3.36
7390 26878 2.238144 CCAGAACACACCAGAGATGGAT 59.762 50.000 0.31 0.00 0.00 3.41
7391 26879 1.625315 CCAGAACACACCAGAGATGGA 59.375 52.381 0.31 0.00 0.00 3.41
7392 26880 1.349026 ACCAGAACACACCAGAGATGG 59.651 52.381 0.00 0.00 0.00 3.51
7393 26881 2.420642 CACCAGAACACACCAGAGATG 58.579 52.381 0.00 0.00 0.00 2.90
7394 26882 1.349026 CCACCAGAACACACCAGAGAT 59.651 52.381 0.00 0.00 0.00 2.75
7395 26883 0.758734 CCACCAGAACACACCAGAGA 59.241 55.000 0.00 0.00 0.00 3.10
7396 26884 0.758734 TCCACCAGAACACACCAGAG 59.241 55.000 0.00 0.00 0.00 3.35
7397 26885 0.758734 CTCCACCAGAACACACCAGA 59.241 55.000 0.00 0.00 0.00 3.86
7398 26886 0.886490 GCTCCACCAGAACACACCAG 60.886 60.000 0.00 0.00 0.00 4.00
7399 26887 1.148273 GCTCCACCAGAACACACCA 59.852 57.895 0.00 0.00 0.00 4.17
7400 26888 0.886490 CTGCTCCACCAGAACACACC 60.886 60.000 0.00 0.00 34.77 4.16
7401 26889 0.106708 TCTGCTCCACCAGAACACAC 59.893 55.000 0.00 0.00 38.81 3.82
7402 26890 1.002430 GATCTGCTCCACCAGAACACA 59.998 52.381 0.00 0.00 44.34 3.72
7403 26891 1.731720 GATCTGCTCCACCAGAACAC 58.268 55.000 0.00 0.00 44.34 3.32
7404 26892 0.247460 CGATCTGCTCCACCAGAACA 59.753 55.000 0.00 0.00 44.34 3.18
7405 26893 0.460987 CCGATCTGCTCCACCAGAAC 60.461 60.000 0.00 0.00 44.34 3.01
7406 26894 0.904865 ACCGATCTGCTCCACCAGAA 60.905 55.000 0.00 0.00 44.34 3.02
7407 26895 1.305297 ACCGATCTGCTCCACCAGA 60.305 57.895 0.00 0.00 45.16 3.86
7408 26896 1.153489 CACCGATCTGCTCCACCAG 60.153 63.158 0.00 0.00 0.00 4.00
7409 26897 1.888436 GACACCGATCTGCTCCACCA 61.888 60.000 0.00 0.00 0.00 4.17
7410 26898 1.153549 GACACCGATCTGCTCCACC 60.154 63.158 0.00 0.00 0.00 4.61
7411 26899 1.153549 GGACACCGATCTGCTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
7412 26900 3.298958 GGACACCGATCTGCTCCA 58.701 61.111 0.00 0.00 0.00 3.86
7425 26913 1.758592 CCAAGGTTTCCCTCGGACA 59.241 57.895 0.00 0.00 37.04 4.02
7427 26915 1.846124 AGCCAAGGTTTCCCTCGGA 60.846 57.895 0.00 0.00 37.04 4.55
7428 26916 1.675641 CAGCCAAGGTTTCCCTCGG 60.676 63.158 0.00 0.00 41.56 4.63
7430 26918 1.979155 GCCAGCCAAGGTTTCCCTC 60.979 63.158 0.00 0.00 41.56 4.30
7436 26924 1.531602 GTTGAGGCCAGCCAAGGTT 60.532 57.895 12.03 0.00 38.92 3.50
7438 26926 3.058160 CGTTGAGGCCAGCCAAGG 61.058 66.667 12.03 8.12 38.92 3.61
7439 26927 2.826777 ATCCGTTGAGGCCAGCCAAG 62.827 60.000 12.03 1.00 40.77 3.61
7440 26928 2.819984 GATCCGTTGAGGCCAGCCAA 62.820 60.000 12.03 2.97 40.77 4.52
7441 26929 3.329542 GATCCGTTGAGGCCAGCCA 62.330 63.158 12.03 0.00 40.77 4.75
7443 26931 2.514824 GGATCCGTTGAGGCCAGC 60.515 66.667 5.01 0.00 40.77 4.85
7444 26932 0.745845 CTTGGATCCGTTGAGGCCAG 60.746 60.000 5.01 0.00 40.77 4.85
7445 26933 1.198094 TCTTGGATCCGTTGAGGCCA 61.198 55.000 5.01 0.00 40.77 5.36
7450 26938 0.391661 GCAGCTCTTGGATCCGTTGA 60.392 55.000 7.39 4.20 0.00 3.18
7451 26939 1.699656 CGCAGCTCTTGGATCCGTTG 61.700 60.000 7.39 2.02 0.00 4.10
7453 26941 2.185350 CGCAGCTCTTGGATCCGT 59.815 61.111 7.39 0.00 0.00 4.69
7456 26944 1.880340 CCGTCGCAGCTCTTGGATC 60.880 63.158 0.00 0.00 0.00 3.36
7457 26945 2.185350 CCGTCGCAGCTCTTGGAT 59.815 61.111 0.00 0.00 0.00 3.41
7458 26946 4.069232 CCCGTCGCAGCTCTTGGA 62.069 66.667 0.00 0.00 0.00 3.53
7469 26957 3.997064 CTCTTGCAGAGGCCCGTCG 62.997 68.421 0.00 0.00 38.67 5.12
7476 26964 2.186384 CTCCGGCTCTTGCAGAGG 59.814 66.667 12.98 1.36 42.54 3.69
7477 26965 2.511145 GCTCCGGCTCTTGCAGAG 60.511 66.667 0.00 8.34 45.04 3.35
7478 26966 4.441695 CGCTCCGGCTCTTGCAGA 62.442 66.667 0.00 0.00 41.91 4.26
7479 26967 3.729965 ATCGCTCCGGCTCTTGCAG 62.730 63.158 0.00 0.00 41.91 4.41
7481 26969 3.267860 CATCGCTCCGGCTCTTGC 61.268 66.667 0.00 0.00 36.09 4.01
7482 26970 2.587194 CCATCGCTCCGGCTCTTG 60.587 66.667 0.00 0.00 36.09 3.02
7483 26971 4.537433 GCCATCGCTCCGGCTCTT 62.537 66.667 0.00 0.00 45.29 2.85
7511 26999 3.142838 CAGGAATGCCTTGGCCCG 61.143 66.667 9.35 0.00 43.90 6.13
7512 27000 3.464494 GCAGGAATGCCTTGGCCC 61.464 66.667 9.35 3.33 43.90 5.80
7524 27012 1.684734 GGGTCTAACTCCGGCAGGA 60.685 63.158 5.19 5.19 46.11 3.86
7525 27013 2.901042 GGGTCTAACTCCGGCAGG 59.099 66.667 0.00 0.00 39.46 4.85
7526 27014 2.494918 CGGGTCTAACTCCGGCAG 59.505 66.667 0.00 0.00 42.32 4.85
7530 27018 4.203076 CCGCCGGGTCTAACTCCG 62.203 72.222 2.18 0.00 45.29 4.63
7531 27019 2.757099 TCCGCCGGGTCTAACTCC 60.757 66.667 1.90 0.00 33.83 3.85
7532 27020 1.673808 ATGTCCGCCGGGTCTAACTC 61.674 60.000 1.90 0.00 33.83 3.01
7533 27021 1.673808 GATGTCCGCCGGGTCTAACT 61.674 60.000 1.90 0.00 33.83 2.24
7534 27022 1.227176 GATGTCCGCCGGGTCTAAC 60.227 63.158 1.90 0.00 33.83 2.34
7535 27023 2.777972 CGATGTCCGCCGGGTCTAA 61.778 63.158 1.90 0.00 33.83 2.10
7536 27024 3.214123 CGATGTCCGCCGGGTCTA 61.214 66.667 1.90 0.00 33.83 2.59
7561 27049 3.739519 CGTCTTCCTTCAGGCTTGGATAG 60.740 52.174 0.00 3.83 34.44 2.08
7562 27050 2.168521 CGTCTTCCTTCAGGCTTGGATA 59.831 50.000 0.00 0.00 34.44 2.59
7563 27051 1.065854 CGTCTTCCTTCAGGCTTGGAT 60.066 52.381 0.00 0.00 34.44 3.41
7564 27052 0.321671 CGTCTTCCTTCAGGCTTGGA 59.678 55.000 0.00 0.00 34.44 3.53
7565 27053 0.674895 CCGTCTTCCTTCAGGCTTGG 60.675 60.000 0.00 0.00 34.44 3.61
7566 27054 1.301677 GCCGTCTTCCTTCAGGCTTG 61.302 60.000 0.00 0.00 44.06 4.01
7567 27055 1.003233 GCCGTCTTCCTTCAGGCTT 60.003 57.895 0.00 0.00 44.06 4.35
7568 27056 2.665603 GCCGTCTTCCTTCAGGCT 59.334 61.111 0.00 0.00 44.06 4.58
7570 27058 1.975327 TGAGCCGTCTTCCTTCAGG 59.025 57.895 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.