Multiple sequence alignment - TraesCS5D01G390500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G390500 chr5D 100.000 5369 0 0 1 5369 459062410 459067778 0.000000e+00 9915.0
1 TraesCS5D01G390500 chr5D 93.694 111 4 3 4702 4812 503655653 503655546 4.300000e-36 163.0
2 TraesCS5D01G390500 chr5D 88.750 80 7 2 4924 5003 484410036 484409959 4.430000e-16 97.1
3 TraesCS5D01G390500 chr5B 94.380 3114 152 16 1121 4225 563119070 563122169 0.000000e+00 4759.0
4 TraesCS5D01G390500 chr5B 86.469 946 73 31 4355 5291 563122583 563123482 0.000000e+00 987.0
5 TraesCS5D01G390500 chr5B 85.856 707 80 11 80 776 563117162 563117858 0.000000e+00 734.0
6 TraesCS5D01G390500 chr5B 85.484 310 31 11 819 1121 563118728 563119030 1.450000e-80 311.0
7 TraesCS5D01G390500 chr5A 95.240 2983 123 13 1121 4094 578043753 578046725 0.000000e+00 4704.0
8 TraesCS5D01G390500 chr5A 89.097 963 70 20 606 1545 578022369 578023319 0.000000e+00 1164.0
9 TraesCS5D01G390500 chr5A 85.842 671 53 23 4310 4976 578046784 578047416 0.000000e+00 675.0
10 TraesCS5D01G390500 chr5A 83.789 512 60 14 624 1121 578043211 578043713 1.050000e-126 464.0
11 TraesCS5D01G390500 chr5A 91.118 304 22 3 5004 5307 578047719 578048017 1.800000e-109 407.0
12 TraesCS5D01G390500 chr6A 85.020 247 22 12 4576 4816 33391434 33391197 2.500000e-58 237.0
13 TraesCS5D01G390500 chr4A 87.662 154 12 7 4668 4818 146562439 146562588 7.150000e-39 172.0
14 TraesCS5D01G390500 chr4A 86.897 145 8 9 4659 4803 656485226 656485359 9.310000e-33 152.0
15 TraesCS5D01G390500 chr4A 88.281 128 7 6 4686 4809 647382090 647382213 4.330000e-31 147.0
16 TraesCS5D01G390500 chr7A 94.495 109 4 2 4715 4821 46802289 46802397 3.330000e-37 167.0
17 TraesCS5D01G390500 chr7A 93.043 115 3 2 4707 4817 46777767 46777880 4.300000e-36 163.0
18 TraesCS5D01G390500 chr7A 91.139 79 4 2 4932 5008 611248796 611248873 2.650000e-18 104.0
19 TraesCS5D01G390500 chr2D 84.000 175 17 9 4643 4817 43918622 43918459 2.000000e-34 158.0
20 TraesCS5D01G390500 chr6B 90.756 119 6 4 4694 4810 60611268 60611153 2.590000e-33 154.0
21 TraesCS5D01G390500 chr3A 97.015 67 2 0 4932 4998 534181925 534181859 4.400000e-21 113.0
22 TraesCS5D01G390500 chr3A 96.923 65 2 0 4932 4996 600920918 600920854 5.690000e-20 110.0
23 TraesCS5D01G390500 chr1D 96.875 64 2 0 4932 4995 326255595 326255532 2.040000e-19 108.0
24 TraesCS5D01G390500 chr7D 96.774 62 2 0 4936 4997 76562669 76562730 2.650000e-18 104.0
25 TraesCS5D01G390500 chr7B 91.892 74 6 0 4932 5005 102234415 102234488 2.650000e-18 104.0
26 TraesCS5D01G390500 chr2A 82.677 127 11 9 4642 4767 46316606 46316490 9.510000e-18 102.0
27 TraesCS5D01G390500 chr3D 88.889 81 8 1 4915 4995 449740031 449739952 1.230000e-16 99.0
28 TraesCS5D01G390500 chr3B 75.000 164 35 5 1280 1443 779548137 779547980 2.680000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G390500 chr5D 459062410 459067778 5368 False 9915.00 9915 100.00000 1 5369 1 chr5D.!!$F1 5368
1 TraesCS5D01G390500 chr5B 563117162 563123482 6320 False 1697.75 4759 88.04725 80 5291 4 chr5B.!!$F1 5211
2 TraesCS5D01G390500 chr5A 578043211 578048017 4806 False 1562.50 4704 88.99725 624 5307 4 chr5A.!!$F2 4683
3 TraesCS5D01G390500 chr5A 578022369 578023319 950 False 1164.00 1164 89.09700 606 1545 1 chr5A.!!$F1 939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 518 0.036010 CATTCACCTCCTTGGACGCT 60.036 55.000 0.00 0.00 39.71 5.07 F
674 677 0.107165 ATAGCTTGGCCGAGAAACCC 60.107 55.000 25.25 5.26 0.00 4.11 F
724 728 0.252513 TGAAAGGAGGGATCGGGTGA 60.253 55.000 0.00 0.00 0.00 4.02 F
727 731 0.252742 AAGGAGGGATCGGGTGAAGT 60.253 55.000 0.00 0.00 0.00 3.01 F
736 740 0.669318 TCGGGTGAAGTGAATGCGAC 60.669 55.000 0.00 0.00 0.00 5.19 F
1003 1853 1.062121 TCCCTATCTTCCACCCTCCAG 60.062 57.143 0.00 0.00 0.00 3.86 F
2274 3186 1.135094 TCATGCTCCTCCCCTGATTC 58.865 55.000 0.00 0.00 0.00 2.52 F
3527 4439 0.750546 CATCAGCCCATGGTCACTGG 60.751 60.000 20.51 3.44 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2832 2.303022 TCCAGTGAGTTCAGGTTCATCC 59.697 50.000 0.00 0.00 0.00 3.51 R
2025 2932 2.836981 ACTCATGAGAAGGCAGCTAAGT 59.163 45.455 29.27 0.00 0.00 2.24 R
2431 3343 3.270877 GGTTAACAGACTAGCCATGGTG 58.729 50.000 14.67 4.82 0.00 4.17 R
2524 3436 4.920999 TCATGTTCATTTCCTCCACATCA 58.079 39.130 0.00 0.00 0.00 3.07 R
2569 3481 5.128919 CAGGTCCTTAAATGATGAGGAAGG 58.871 45.833 0.00 0.00 41.02 3.46 R
2869 3781 2.419667 GGGCGCAGTACTTGTCTTTTA 58.580 47.619 10.83 0.00 0.00 1.52 R
4125 5037 0.250640 GTGGATGCAGGCTAGGATGG 60.251 60.000 0.00 0.00 0.00 3.51 R
4447 5649 0.034059 CCGGAGAGACAGTTGCAAGT 59.966 55.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.734655 AGGAGAAGGCAAAGGAGTCA 58.265 50.000 0.00 0.00 0.00 3.41
21 22 2.273619 AGGAGAAGGCAAAGGAGTCAT 58.726 47.619 0.00 0.00 0.00 3.06
22 23 3.454858 AGGAGAAGGCAAAGGAGTCATA 58.545 45.455 0.00 0.00 0.00 2.15
23 24 3.198853 AGGAGAAGGCAAAGGAGTCATAC 59.801 47.826 0.00 0.00 0.00 2.39
24 25 3.055094 GGAGAAGGCAAAGGAGTCATACA 60.055 47.826 0.00 0.00 0.00 2.29
25 26 4.565652 GGAGAAGGCAAAGGAGTCATACAA 60.566 45.833 0.00 0.00 0.00 2.41
26 27 4.583871 AGAAGGCAAAGGAGTCATACAAG 58.416 43.478 0.00 0.00 0.00 3.16
27 28 3.356529 AGGCAAAGGAGTCATACAAGG 57.643 47.619 0.00 0.00 0.00 3.61
28 29 2.644798 AGGCAAAGGAGTCATACAAGGT 59.355 45.455 0.00 0.00 0.00 3.50
29 30 3.074538 AGGCAAAGGAGTCATACAAGGTT 59.925 43.478 0.00 0.00 0.00 3.50
30 31 3.191371 GGCAAAGGAGTCATACAAGGTTG 59.809 47.826 0.00 0.00 0.00 3.77
31 32 4.072131 GCAAAGGAGTCATACAAGGTTGA 58.928 43.478 0.00 0.00 0.00 3.18
32 33 4.154918 GCAAAGGAGTCATACAAGGTTGAG 59.845 45.833 0.00 0.00 0.00 3.02
33 34 4.559862 AAGGAGTCATACAAGGTTGAGG 57.440 45.455 0.00 0.00 0.00 3.86
34 35 3.791320 AGGAGTCATACAAGGTTGAGGA 58.209 45.455 0.00 0.00 0.00 3.71
35 36 3.772025 AGGAGTCATACAAGGTTGAGGAG 59.228 47.826 0.00 0.00 0.00 3.69
36 37 3.118592 GGAGTCATACAAGGTTGAGGAGG 60.119 52.174 0.00 0.00 0.00 4.30
37 38 3.515901 GAGTCATACAAGGTTGAGGAGGT 59.484 47.826 0.00 0.00 0.00 3.85
38 39 4.684724 AGTCATACAAGGTTGAGGAGGTA 58.315 43.478 0.00 0.00 0.00 3.08
39 40 4.466726 AGTCATACAAGGTTGAGGAGGTAC 59.533 45.833 0.00 0.00 0.00 3.34
40 41 4.222145 GTCATACAAGGTTGAGGAGGTACA 59.778 45.833 0.00 0.00 0.00 2.90
41 42 4.841813 TCATACAAGGTTGAGGAGGTACAA 59.158 41.667 0.00 0.00 0.00 2.41
42 43 3.487120 ACAAGGTTGAGGAGGTACAAC 57.513 47.619 0.00 0.00 43.53 3.32
43 44 2.775384 ACAAGGTTGAGGAGGTACAACA 59.225 45.455 0.00 0.00 45.27 3.33
44 45 3.139077 CAAGGTTGAGGAGGTACAACAC 58.861 50.000 0.00 0.00 45.27 3.32
45 46 2.690840 AGGTTGAGGAGGTACAACACT 58.309 47.619 0.00 0.00 45.27 3.55
46 47 2.633481 AGGTTGAGGAGGTACAACACTC 59.367 50.000 0.00 0.00 45.27 3.51
47 48 2.367567 GGTTGAGGAGGTACAACACTCA 59.632 50.000 0.00 0.00 45.27 3.41
48 49 3.008049 GGTTGAGGAGGTACAACACTCAT 59.992 47.826 0.00 0.00 45.27 2.90
49 50 4.246458 GTTGAGGAGGTACAACACTCATC 58.754 47.826 0.00 6.98 43.66 2.92
50 51 2.492088 TGAGGAGGTACAACACTCATCG 59.508 50.000 0.00 0.00 44.84 3.84
51 52 2.753452 GAGGAGGTACAACACTCATCGA 59.247 50.000 0.00 0.00 35.26 3.59
52 53 3.162666 AGGAGGTACAACACTCATCGAA 58.837 45.455 0.00 0.00 35.45 3.71
53 54 3.576982 AGGAGGTACAACACTCATCGAAA 59.423 43.478 0.00 0.00 35.45 3.46
54 55 4.223032 AGGAGGTACAACACTCATCGAAAT 59.777 41.667 0.00 0.00 35.45 2.17
55 56 4.567159 GGAGGTACAACACTCATCGAAATC 59.433 45.833 0.00 0.00 35.45 2.17
56 57 4.504858 AGGTACAACACTCATCGAAATCC 58.495 43.478 0.00 0.00 0.00 3.01
57 58 4.223032 AGGTACAACACTCATCGAAATCCT 59.777 41.667 0.00 0.00 0.00 3.24
58 59 4.935808 GGTACAACACTCATCGAAATCCTT 59.064 41.667 0.00 0.00 0.00 3.36
59 60 5.163854 GGTACAACACTCATCGAAATCCTTG 60.164 44.000 0.00 0.00 0.00 3.61
60 61 4.389374 ACAACACTCATCGAAATCCTTGT 58.611 39.130 0.00 0.00 0.00 3.16
61 62 4.452455 ACAACACTCATCGAAATCCTTGTC 59.548 41.667 0.00 0.00 0.00 3.18
62 63 3.254060 ACACTCATCGAAATCCTTGTCG 58.746 45.455 0.00 0.00 38.62 4.35
63 64 2.604914 CACTCATCGAAATCCTTGTCGG 59.395 50.000 0.00 0.00 37.84 4.79
84 85 4.883354 CCTCCCCGGCAAGCATCC 62.883 72.222 0.00 0.00 0.00 3.51
95 96 1.533338 GCAAGCATCCAGAAGCGATTG 60.533 52.381 0.00 0.00 35.48 2.67
98 99 2.028130 CATCCAGAAGCGATTGCCC 58.972 57.895 0.00 0.00 44.31 5.36
126 127 2.947542 CCTCGGCGTCTAGATCCG 59.052 66.667 22.83 22.83 44.16 4.18
132 133 1.300233 GCGTCTAGATCCGGCTTGG 60.300 63.158 0.00 0.00 40.09 3.61
140 141 2.920912 TCCGGCTTGGAGAACCGT 60.921 61.111 0.00 0.00 43.74 4.83
142 143 2.325082 CCGGCTTGGAGAACCGTTG 61.325 63.158 0.00 0.00 45.49 4.10
144 145 1.841663 CGGCTTGGAGAACCGTTGTG 61.842 60.000 0.00 0.00 42.01 3.33
151 152 3.276846 GAACCGTTGTGCAGGCGT 61.277 61.111 0.00 0.00 0.00 5.68
157 158 1.571460 GTTGTGCAGGCGTCAAGAG 59.429 57.895 0.00 0.00 0.00 2.85
181 182 2.126580 CCGAACGGGTCAGACGAC 60.127 66.667 5.25 0.00 41.80 4.34
196 197 0.597637 ACGACGTGAGCAACAAGGAG 60.598 55.000 0.00 0.00 32.54 3.69
197 198 1.862806 GACGTGAGCAACAAGGAGC 59.137 57.895 0.00 0.00 32.54 4.70
239 240 2.048503 CTGGTCCCCACGAACGAC 60.049 66.667 0.14 0.00 0.00 4.34
253 256 2.637025 CGACCAACGTTGCCCTTG 59.363 61.111 22.93 11.10 37.22 3.61
270 273 4.021104 GCCCTTGTTCTTCTTTGCCTATTT 60.021 41.667 0.00 0.00 0.00 1.40
276 279 5.009610 TGTTCTTCTTTGCCTATTTCACCAC 59.990 40.000 0.00 0.00 0.00 4.16
286 289 3.056107 CCTATTTCACCACCTTCTCGTCA 60.056 47.826 0.00 0.00 0.00 4.35
289 292 0.526211 TCACCACCTTCTCGTCATCG 59.474 55.000 0.00 0.00 38.55 3.84
307 310 0.583438 CGTGGATCACAATCGGCATC 59.417 55.000 0.00 0.00 33.40 3.91
319 322 1.374125 CGGCATCAGACGTGAACCA 60.374 57.895 0.00 0.00 42.75 3.67
321 324 1.021390 GGCATCAGACGTGAACCAGG 61.021 60.000 0.00 0.00 35.88 4.45
331 334 0.949105 GTGAACCAGGCGACGACAAT 60.949 55.000 2.19 0.00 0.00 2.71
342 345 2.283351 GCGACGACAATACCATTACCAC 59.717 50.000 0.00 0.00 0.00 4.16
343 346 2.861935 CGACGACAATACCATTACCACC 59.138 50.000 0.00 0.00 0.00 4.61
344 347 2.861935 GACGACAATACCATTACCACCG 59.138 50.000 0.00 0.00 0.00 4.94
345 348 1.595794 CGACAATACCATTACCACCGC 59.404 52.381 0.00 0.00 0.00 5.68
346 349 1.944709 GACAATACCATTACCACCGCC 59.055 52.381 0.00 0.00 0.00 6.13
347 350 1.282447 ACAATACCATTACCACCGCCA 59.718 47.619 0.00 0.00 0.00 5.69
348 351 1.673920 CAATACCATTACCACCGCCAC 59.326 52.381 0.00 0.00 0.00 5.01
365 368 4.087892 CCGCCTCCTCCACTGGTG 62.088 72.222 0.00 0.00 0.00 4.17
377 380 2.445145 TCCACTGGTGAGGGATTTGAAA 59.555 45.455 1.93 0.00 0.00 2.69
379 382 3.490348 CACTGGTGAGGGATTTGAAAGT 58.510 45.455 0.00 0.00 0.00 2.66
389 392 2.095212 GGATTTGAAAGTCGCCCACTTC 60.095 50.000 0.00 0.00 45.32 3.01
394 397 1.266989 GAAAGTCGCCCACTTCCTTTG 59.733 52.381 0.00 0.00 45.32 2.77
395 398 1.172812 AAGTCGCCCACTTCCTTTGC 61.173 55.000 0.00 0.00 42.07 3.68
410 413 2.693074 CCTTTGCTGTGTAGGGTTTGTT 59.307 45.455 0.00 0.00 0.00 2.83
429 432 1.751927 GAGTCCGCCTCCTCCGTAA 60.752 63.158 0.00 0.00 33.79 3.18
459 462 1.148273 ACTTTGAGCGGGCACTTCA 59.852 52.632 0.00 0.00 0.00 3.02
472 475 1.002134 ACTTCACCTTGGCATCCGG 60.002 57.895 0.00 0.00 0.00 5.14
473 476 1.750399 CTTCACCTTGGCATCCGGG 60.750 63.158 0.00 0.00 0.00 5.73
482 485 2.178273 GCATCCGGGAACAAACGC 59.822 61.111 0.00 0.00 0.00 4.84
486 489 1.571215 ATCCGGGAACAAACGCGTTC 61.571 55.000 26.77 12.89 43.75 3.95
494 497 2.033194 CAAACGCGTTCCCTCCTCC 61.033 63.158 26.77 0.00 0.00 4.30
506 509 1.144936 CTCCTCCGCATTCACCTCC 59.855 63.158 0.00 0.00 0.00 4.30
513 516 1.361668 CGCATTCACCTCCTTGGACG 61.362 60.000 0.00 0.00 39.71 4.79
515 518 0.036010 CATTCACCTCCTTGGACGCT 60.036 55.000 0.00 0.00 39.71 5.07
522 525 3.726517 CCTTGGACGCTGCCAACG 61.727 66.667 3.30 0.00 42.75 4.10
547 550 2.569134 GCTCAACTCGCTCGAGGT 59.431 61.111 21.34 13.79 45.88 3.85
552 555 2.916052 AACTCGCTCGAGGTCGCAA 61.916 57.895 21.34 0.00 45.88 4.85
571 574 0.250124 AACCACGAGCCGATTTCACA 60.250 50.000 1.50 0.00 0.00 3.58
574 577 1.265635 CCACGAGCCGATTTCACAAAA 59.734 47.619 1.50 0.00 0.00 2.44
575 578 2.574322 CACGAGCCGATTTCACAAAAG 58.426 47.619 1.50 0.00 0.00 2.27
577 580 1.729149 CGAGCCGATTTCACAAAAGCC 60.729 52.381 0.00 0.00 0.00 4.35
578 581 0.240945 AGCCGATTTCACAAAAGCCG 59.759 50.000 0.00 0.00 0.00 5.52
580 583 1.065031 CCGATTTCACAAAAGCCGCG 61.065 55.000 0.00 0.00 0.00 6.46
581 584 1.664643 CGATTTCACAAAAGCCGCGC 61.665 55.000 0.00 0.00 0.00 6.86
582 585 0.387239 GATTTCACAAAAGCCGCGCT 60.387 50.000 5.56 0.00 42.56 5.92
583 586 0.878416 ATTTCACAAAAGCCGCGCTA 59.122 45.000 5.56 0.00 38.25 4.26
584 587 0.237235 TTTCACAAAAGCCGCGCTAG 59.763 50.000 5.56 0.00 38.25 3.42
585 588 2.182614 TTCACAAAAGCCGCGCTAGC 62.183 55.000 5.56 8.74 38.25 3.42
600 603 1.799933 CTAGCTTCCCCACATCTCCT 58.200 55.000 0.00 0.00 0.00 3.69
604 607 1.689233 TTCCCCACATCTCCTCCCG 60.689 63.158 0.00 0.00 0.00 5.14
674 677 0.107165 ATAGCTTGGCCGAGAAACCC 60.107 55.000 25.25 5.26 0.00 4.11
675 678 2.515996 TAGCTTGGCCGAGAAACCCG 62.516 60.000 25.25 0.00 0.00 5.28
676 679 2.032071 CTTGGCCGAGAAACCCGT 59.968 61.111 15.76 0.00 0.00 5.28
705 708 2.122768 GGAGTGGATCTGGTGAGGAAT 58.877 52.381 0.00 0.00 0.00 3.01
708 711 3.184628 AGTGGATCTGGTGAGGAATGAA 58.815 45.455 0.00 0.00 0.00 2.57
711 714 3.054139 TGGATCTGGTGAGGAATGAAAGG 60.054 47.826 0.00 0.00 0.00 3.11
724 728 0.252513 TGAAAGGAGGGATCGGGTGA 60.253 55.000 0.00 0.00 0.00 4.02
727 731 0.252742 AAGGAGGGATCGGGTGAAGT 60.253 55.000 0.00 0.00 0.00 3.01
728 732 0.978146 AGGAGGGATCGGGTGAAGTG 60.978 60.000 0.00 0.00 0.00 3.16
736 740 0.669318 TCGGGTGAAGTGAATGCGAC 60.669 55.000 0.00 0.00 0.00 5.19
743 747 3.064207 TGAAGTGAATGCGACAAGGTAC 58.936 45.455 0.00 0.00 0.00 3.34
749 753 3.991773 TGAATGCGACAAGGTACAAGTAC 59.008 43.478 1.77 1.77 35.40 2.73
750 754 3.671008 ATGCGACAAGGTACAAGTACA 57.329 42.857 12.00 0.00 37.78 2.90
752 756 3.386486 TGCGACAAGGTACAAGTACAAG 58.614 45.455 12.00 4.13 37.78 3.16
753 757 2.157085 GCGACAAGGTACAAGTACAAGC 59.843 50.000 12.00 4.58 37.78 4.01
754 758 3.386486 CGACAAGGTACAAGTACAAGCA 58.614 45.455 12.00 0.00 37.78 3.91
765 775 7.549488 GGTACAAGTACAAGCAGTGAGAAATAT 59.451 37.037 12.00 0.00 37.78 1.28
806 1140 7.531280 AAGAAACAATCACACATCTCTATCG 57.469 36.000 0.00 0.00 0.00 2.92
868 1708 3.383761 GGGCACAATCAGTTGTCAAAAG 58.616 45.455 0.00 0.00 45.14 2.27
871 1711 4.741676 GGCACAATCAGTTGTCAAAAGAAG 59.258 41.667 0.00 0.00 45.14 2.85
873 1713 6.035843 GCACAATCAGTTGTCAAAAGAAGAA 58.964 36.000 0.00 0.00 45.14 2.52
874 1714 6.197842 GCACAATCAGTTGTCAAAAGAAGAAG 59.802 38.462 0.00 0.00 45.14 2.85
878 1728 9.357652 CAATCAGTTGTCAAAAGAAGAAGAAAA 57.642 29.630 0.00 0.00 0.00 2.29
953 1803 4.090057 GCGGCGGTGCTCTGTTTC 62.090 66.667 9.78 0.00 0.00 2.78
1003 1853 1.062121 TCCCTATCTTCCACCCTCCAG 60.062 57.143 0.00 0.00 0.00 3.86
1070 1920 1.548269 GACCAAGACCCAGACAGAGAG 59.452 57.143 0.00 0.00 0.00 3.20
1071 1921 1.148027 ACCAAGACCCAGACAGAGAGA 59.852 52.381 0.00 0.00 0.00 3.10
1925 2832 6.069684 ACAATGCTCTCTCAAGTCAAAAAG 57.930 37.500 0.00 0.00 0.00 2.27
2018 2925 9.142014 CAGGATAAGAGGTATCTAATCCCATAG 57.858 40.741 7.55 0.00 38.98 2.23
2020 2927 9.716556 GGATAAGAGGTATCTAATCCCATAGAA 57.283 37.037 1.57 0.00 38.98 2.10
2045 2956 3.196463 CACTTAGCTGCCTTCTCATGAG 58.804 50.000 17.07 17.07 0.00 2.90
2046 2957 2.836981 ACTTAGCTGCCTTCTCATGAGT 59.163 45.455 21.92 3.12 0.00 3.41
2047 2958 3.118811 ACTTAGCTGCCTTCTCATGAGTC 60.119 47.826 21.92 10.50 0.00 3.36
2048 2959 1.273759 AGCTGCCTTCTCATGAGTCA 58.726 50.000 21.92 13.98 0.00 3.41
2050 2961 1.941294 GCTGCCTTCTCATGAGTCATG 59.059 52.381 24.60 24.60 42.60 3.07
2051 2962 2.419713 GCTGCCTTCTCATGAGTCATGA 60.420 50.000 29.39 29.39 46.84 3.07
2062 2973 6.169419 TCATGAGTCATGAACGTTTTGATC 57.831 37.500 29.39 13.56 46.17 2.92
2082 2993 8.491331 TTGATCGATTGTCTTGATGATAACAA 57.509 30.769 0.00 0.00 36.19 2.83
2093 3005 7.649306 GTCTTGATGATAACAAGCTTGTGTTTT 59.351 33.333 31.73 18.68 41.84 2.43
2094 3006 8.845227 TCTTGATGATAACAAGCTTGTGTTTTA 58.155 29.630 31.73 20.20 41.84 1.52
2274 3186 1.135094 TCATGCTCCTCCCCTGATTC 58.865 55.000 0.00 0.00 0.00 2.52
2299 3211 6.888105 TGATCTTGTATATGAACTGAAGGCA 58.112 36.000 0.00 0.00 0.00 4.75
2312 3224 1.980765 TGAAGGCACTGAGTGAGGATT 59.019 47.619 18.18 4.30 40.86 3.01
2383 3295 2.222027 CCACACCAACTCAAGGAAGTC 58.778 52.381 0.00 0.00 0.00 3.01
2431 3343 4.494484 GTGGTTTACCTTTGGCAATCATC 58.506 43.478 0.00 0.00 36.82 2.92
2464 3376 4.348168 AGTCTGTTAACCACCAAGTCAGAT 59.652 41.667 2.48 0.00 33.98 2.90
2524 3436 4.575236 GGTTTTGGACTCGAGAAAAACTCT 59.425 41.667 30.87 10.39 42.92 3.24
2551 3463 5.882000 TGTGGAGGAAATGAACATGATACTG 59.118 40.000 0.00 0.00 0.00 2.74
2776 3688 3.541632 AGCGGTGGATTTTCAATACGAT 58.458 40.909 0.00 0.00 0.00 3.73
2791 3703 5.047377 TCAATACGATGGCAGAGTATATGCA 60.047 40.000 15.08 0.00 45.68 3.96
2810 3722 2.495866 GCCGGGTGCATGATTTGG 59.504 61.111 2.18 0.00 40.77 3.28
2812 3724 1.887344 GCCGGGTGCATGATTTGGTT 61.887 55.000 2.18 0.00 40.77 3.67
2815 3727 1.545582 CGGGTGCATGATTTGGTTCTT 59.454 47.619 0.00 0.00 0.00 2.52
2926 3838 1.468908 CGACTCTCATCTGACTGCACC 60.469 57.143 0.00 0.00 0.00 5.01
3029 3941 3.421844 CCTCCTCTTTTGAATTTCCGGT 58.578 45.455 0.00 0.00 0.00 5.28
3083 3995 6.006275 AGGATTTGGAAAGCTGCTATCTTA 57.994 37.500 0.90 0.00 0.00 2.10
3210 4122 7.550597 TGGATCTTCTCAACTGCTATGATAT 57.449 36.000 0.00 0.00 0.00 1.63
3316 4228 2.935201 CAACATGCAAGCTCTAGAGTCC 59.065 50.000 20.75 5.48 0.00 3.85
3325 4237 1.131504 GCTCTAGAGTCCGTGTCACTG 59.868 57.143 20.75 0.00 0.00 3.66
3469 4381 5.438972 GCAGATAATCTTGTTTCATCGCTC 58.561 41.667 0.00 0.00 0.00 5.03
3498 4410 1.757699 AGGCACCTCTAACCTTCGATC 59.242 52.381 0.00 0.00 0.00 3.69
3527 4439 0.750546 CATCAGCCCATGGTCACTGG 60.751 60.000 20.51 3.44 0.00 4.00
3533 4445 0.987294 CCCATGGTCACTGGACTTCT 59.013 55.000 11.73 0.00 43.77 2.85
3536 4448 1.808945 CATGGTCACTGGACTTCTTGC 59.191 52.381 0.00 0.00 43.77 4.01
3601 4513 2.638480 TCAAAGGTTGGTGTCTCAGG 57.362 50.000 0.00 0.00 0.00 3.86
3666 4578 2.417719 AGACATCGAGGTTGAAGTTGC 58.582 47.619 3.38 0.00 0.00 4.17
3667 4579 1.126846 GACATCGAGGTTGAAGTTGCG 59.873 52.381 3.38 0.00 0.00 4.85
3677 4589 1.082104 GAAGTTGCGCAGGAAACCG 60.082 57.895 11.31 0.00 41.38 4.44
3738 4650 3.276857 AGTCATACTCAAATGCAGCAGG 58.723 45.455 0.00 0.00 0.00 4.85
3757 4669 1.683319 GGCCCCCAAGAAAGATGTCTC 60.683 57.143 0.00 0.00 0.00 3.36
3758 4670 1.004745 GCCCCCAAGAAAGATGTCTCA 59.995 52.381 0.00 0.00 0.00 3.27
3765 4677 4.931601 CCAAGAAAGATGTCTCATTGTCGA 59.068 41.667 0.00 0.00 0.00 4.20
3780 4692 0.879090 GTCGACAACAATGGGTTCCC 59.121 55.000 11.55 0.12 37.72 3.97
3793 4705 2.040278 TGGGTTCCCATGTCTGAAGAAG 59.960 50.000 6.46 0.00 0.00 2.85
4023 4935 1.289160 TTGGAGGCTGCTATTCAGGT 58.711 50.000 7.74 0.00 43.06 4.00
4051 4963 1.985159 AGTATGCTTCCCAACAGTCCA 59.015 47.619 0.00 0.00 0.00 4.02
4057 4969 0.923358 TTCCCAACAGTCCAACACCT 59.077 50.000 0.00 0.00 0.00 4.00
4125 5037 5.342259 CAGAACAATAAGCAACTTTTACGCC 59.658 40.000 0.00 0.00 0.00 5.68
4131 5043 1.173913 GCAACTTTTACGCCCATCCT 58.826 50.000 0.00 0.00 0.00 3.24
4141 5053 1.303155 GCCCATCCTAGCCTGCATC 60.303 63.158 0.00 0.00 0.00 3.91
4145 5057 0.763652 CATCCTAGCCTGCATCCACT 59.236 55.000 0.00 0.00 0.00 4.00
4163 5079 7.229306 GCATCCACTCATTAAGGTATTGATTGA 59.771 37.037 0.00 0.00 0.00 2.57
4203 5119 4.240096 CCAAACCAAAATGTCTGCTCATC 58.760 43.478 0.00 0.00 0.00 2.92
4209 5125 2.414994 AATGTCTGCTCATCTGGGTG 57.585 50.000 0.00 0.00 0.00 4.61
4217 5133 1.468985 CTCATCTGGGTGTCGACTCT 58.531 55.000 17.92 0.00 0.00 3.24
4225 5141 1.006805 GTGTCGACTCTGCTGCACT 60.007 57.895 17.92 0.00 0.00 4.40
4226 5142 0.598680 GTGTCGACTCTGCTGCACTT 60.599 55.000 17.92 0.00 0.00 3.16
4228 5144 1.068264 TGTCGACTCTGCTGCACTTAG 60.068 52.381 17.92 0.00 0.00 2.18
4229 5145 0.528017 TCGACTCTGCTGCACTTAGG 59.472 55.000 0.00 0.00 0.00 2.69
4230 5146 0.244994 CGACTCTGCTGCACTTAGGT 59.755 55.000 0.00 0.00 0.00 3.08
4231 5147 1.472878 CGACTCTGCTGCACTTAGGTA 59.527 52.381 0.00 0.00 0.00 3.08
4232 5148 2.099921 CGACTCTGCTGCACTTAGGTAT 59.900 50.000 0.00 0.00 0.00 2.73
4233 5149 3.452474 GACTCTGCTGCACTTAGGTATG 58.548 50.000 0.00 0.00 0.00 2.39
4234 5150 2.169352 ACTCTGCTGCACTTAGGTATGG 59.831 50.000 0.00 0.00 0.00 2.74
4236 5152 2.571653 TCTGCTGCACTTAGGTATGGTT 59.428 45.455 0.00 0.00 0.00 3.67
4262 5331 1.528129 CAGCTGTTTCTTGAGTCCCC 58.472 55.000 5.25 0.00 0.00 4.81
4271 5341 1.073923 TCTTGAGTCCCCTCCTTTTGC 59.926 52.381 0.00 0.00 36.86 3.68
4281 5351 2.036346 CCCTCCTTTTGCCTTTGTCTTG 59.964 50.000 0.00 0.00 0.00 3.02
4285 5355 2.483538 CCTTTTGCCTTTGTCTTGGTGG 60.484 50.000 0.00 0.00 0.00 4.61
4302 5372 2.681344 GGTGGACCGGTGAAATTGATAC 59.319 50.000 14.63 0.00 0.00 2.24
4303 5373 3.340034 GTGGACCGGTGAAATTGATACA 58.660 45.455 14.63 0.00 0.00 2.29
4364 5565 4.572389 GACAAATGTCTCAGTGTTGACTGT 59.428 41.667 15.83 12.76 41.65 3.55
4379 5580 4.729227 TGACTGTTGTAACTGTGTCTCA 57.271 40.909 11.26 2.07 40.51 3.27
4391 5592 2.234661 CTGTGTCTCAGGGCATGTCTTA 59.765 50.000 0.00 0.00 40.23 2.10
4395 5596 2.234908 GTCTCAGGGCATGTCTTAGTGT 59.765 50.000 0.00 0.00 0.00 3.55
4396 5597 2.906389 TCTCAGGGCATGTCTTAGTGTT 59.094 45.455 0.00 0.00 0.00 3.32
4397 5598 3.005554 CTCAGGGCATGTCTTAGTGTTG 58.994 50.000 0.00 0.00 0.00 3.33
4398 5599 2.637382 TCAGGGCATGTCTTAGTGTTGA 59.363 45.455 0.00 0.00 0.00 3.18
4399 5600 2.744202 CAGGGCATGTCTTAGTGTTGAC 59.256 50.000 0.00 0.00 0.00 3.18
4400 5601 2.639839 AGGGCATGTCTTAGTGTTGACT 59.360 45.455 0.00 0.00 34.57 3.41
4401 5602 2.744202 GGGCATGTCTTAGTGTTGACTG 59.256 50.000 0.00 0.00 34.57 3.51
4402 5603 2.160417 GGCATGTCTTAGTGTTGACTGC 59.840 50.000 0.00 0.00 37.01 4.40
4403 5604 3.070018 GCATGTCTTAGTGTTGACTGCT 58.930 45.455 0.00 0.00 35.99 4.24
4404 5605 4.245660 GCATGTCTTAGTGTTGACTGCTA 58.754 43.478 0.00 0.00 35.99 3.49
4410 5611 5.574830 GTCTTAGTGTTGACTGCTAGACATG 59.425 44.000 0.00 0.00 36.93 3.21
4435 5636 4.449405 GGACGAGTTTTTCTTCTTCCTCTG 59.551 45.833 0.00 0.00 0.00 3.35
4445 5647 3.072915 TCTTCTTCCTCTGGAATGTTGCA 59.927 43.478 0.00 0.00 41.23 4.08
4446 5648 3.507162 TCTTCCTCTGGAATGTTGCAA 57.493 42.857 0.00 0.00 41.23 4.08
4447 5649 3.831323 TCTTCCTCTGGAATGTTGCAAA 58.169 40.909 0.00 0.00 41.23 3.68
4448 5650 3.569701 TCTTCCTCTGGAATGTTGCAAAC 59.430 43.478 0.00 0.00 41.23 2.93
4449 5651 3.565307 TTCCTCTGGAATGTTGCAAACT 58.435 40.909 0.00 0.00 41.53 2.66
4450 5652 3.960102 TTCCTCTGGAATGTTGCAAACTT 59.040 39.130 0.00 0.00 41.53 2.66
4451 5653 4.202141 TTCCTCTGGAATGTTGCAAACTTG 60.202 41.667 0.00 0.00 41.53 3.16
4452 5654 7.688325 TTCCTCTGGAATGTTGCAAACTTGC 62.688 44.000 0.00 7.50 44.57 4.01
4485 5688 2.365582 GGGTATCGTGTTGCCATTTCT 58.634 47.619 0.00 0.00 0.00 2.52
4535 5741 5.970317 AAATCATGATGTGTGTGTGACAT 57.030 34.783 9.46 0.00 36.78 3.06
4538 5744 5.110940 TCATGATGTGTGTGTGACATTTG 57.889 39.130 0.00 0.00 36.78 2.32
4543 5749 3.274288 TGTGTGTGTGACATTTGTGCTA 58.726 40.909 0.00 0.00 36.78 3.49
4544 5750 3.882288 TGTGTGTGTGACATTTGTGCTAT 59.118 39.130 0.00 0.00 36.78 2.97
4605 5813 2.063266 CAGATTGTGCGCATGCTTTTT 58.937 42.857 15.91 0.00 43.34 1.94
4627 5835 4.785301 TGATCTCCCTTTTATGCCAAGAG 58.215 43.478 0.00 0.00 0.00 2.85
4680 5888 8.553459 TTGGAGTTTGCAAAAGTAAATTCAAA 57.447 26.923 14.67 0.00 0.00 2.69
4817 6028 2.375174 TGAGCTACATCCCCTTGTTGTT 59.625 45.455 0.00 0.00 0.00 2.83
4820 6031 2.749621 GCTACATCCCCTTGTTGTTCAG 59.250 50.000 0.00 0.00 0.00 3.02
4821 6032 2.292828 ACATCCCCTTGTTGTTCAGG 57.707 50.000 0.00 0.00 0.00 3.86
4822 6033 1.203050 ACATCCCCTTGTTGTTCAGGG 60.203 52.381 0.00 0.00 42.13 4.45
4833 6044 7.233348 CCCTTGTTGTTCAGGGCATAATATATT 59.767 37.037 2.97 2.97 41.29 1.28
4834 6045 8.299570 CCTTGTTGTTCAGGGCATAATATATTC 58.700 37.037 0.00 0.00 36.52 1.75
4835 6046 7.433708 TGTTGTTCAGGGCATAATATATTCG 57.566 36.000 0.00 0.00 0.00 3.34
4836 6047 6.995686 TGTTGTTCAGGGCATAATATATTCGT 59.004 34.615 0.00 0.00 0.00 3.85
4996 6497 8.722622 TTATATTTAGGAACAGAGGGAGTAGG 57.277 38.462 0.00 0.00 0.00 3.18
4997 6498 4.687262 TTTAGGAACAGAGGGAGTAGGA 57.313 45.455 0.00 0.00 0.00 2.94
4998 6499 2.838637 AGGAACAGAGGGAGTAGGAG 57.161 55.000 0.00 0.00 0.00 3.69
4999 6500 2.289467 AGGAACAGAGGGAGTAGGAGA 58.711 52.381 0.00 0.00 0.00 3.71
5000 6501 2.862597 AGGAACAGAGGGAGTAGGAGAT 59.137 50.000 0.00 0.00 0.00 2.75
5001 6502 4.055820 AGGAACAGAGGGAGTAGGAGATA 58.944 47.826 0.00 0.00 0.00 1.98
5002 6503 4.672650 AGGAACAGAGGGAGTAGGAGATAT 59.327 45.833 0.00 0.00 0.00 1.63
5003 6504 5.137082 AGGAACAGAGGGAGTAGGAGATATT 59.863 44.000 0.00 0.00 0.00 1.28
5004 6505 5.841783 GGAACAGAGGGAGTAGGAGATATTT 59.158 44.000 0.00 0.00 0.00 1.40
5005 6506 7.011382 GGAACAGAGGGAGTAGGAGATATTTA 58.989 42.308 0.00 0.00 0.00 1.40
5006 6507 7.039574 GGAACAGAGGGAGTAGGAGATATTTAC 60.040 44.444 0.00 0.00 0.00 2.01
5007 6508 6.923670 ACAGAGGGAGTAGGAGATATTTACA 58.076 40.000 0.00 0.00 0.00 2.41
5008 6509 7.007723 ACAGAGGGAGTAGGAGATATTTACAG 58.992 42.308 0.00 0.00 0.00 2.74
5009 6510 6.014012 AGAGGGAGTAGGAGATATTTACAGC 58.986 44.000 0.00 0.00 0.00 4.40
5031 6532 4.992740 TGCGGGCTGCCAAACCAT 62.993 61.111 22.05 0.00 45.60 3.55
5076 6577 8.923270 AGAGAAGTAGCAAATCTAGCTAAAGAT 58.077 33.333 0.00 0.00 45.30 2.40
5115 6616 6.760291 ACTCCTTCTACTCTCAAAACGAAAT 58.240 36.000 0.00 0.00 0.00 2.17
5161 6662 9.487790 CTCTTCTGGCTTTAATCTCCTTAATAG 57.512 37.037 0.00 0.00 0.00 1.73
5170 6671 9.396022 CTTTAATCTCCTTAATAGTGGCTTCAA 57.604 33.333 0.00 0.00 0.00 2.69
5215 6716 4.437390 GCAATGTCTTTAATCACCGACTGG 60.437 45.833 0.00 0.00 42.84 4.00
5216 6717 2.695359 TGTCTTTAATCACCGACTGGC 58.305 47.619 0.00 0.00 39.70 4.85
5217 6718 1.659098 GTCTTTAATCACCGACTGGCG 59.341 52.381 0.00 0.00 39.70 5.69
5218 6719 0.373716 CTTTAATCACCGACTGGCGC 59.626 55.000 0.00 0.00 39.70 6.53
5267 6768 2.247699 TGCCTAGGTCTAGAGCCAAA 57.752 50.000 18.14 3.91 35.21 3.28
5280 6781 2.158549 AGAGCCAAAGATAATGCCTCCC 60.159 50.000 0.00 0.00 0.00 4.30
5307 6808 4.228899 ACGTTTCAAGCGTTGGGT 57.771 50.000 0.00 0.00 39.79 4.51
5308 6809 1.725066 ACGTTTCAAGCGTTGGGTG 59.275 52.632 0.00 0.00 39.79 4.61
5309 6810 1.008995 CGTTTCAAGCGTTGGGTGG 60.009 57.895 0.00 0.00 0.00 4.61
5310 6811 1.362355 GTTTCAAGCGTTGGGTGGG 59.638 57.895 0.00 0.00 0.00 4.61
5311 6812 1.076632 TTTCAAGCGTTGGGTGGGT 60.077 52.632 0.00 0.00 0.00 4.51
5312 6813 1.388065 TTTCAAGCGTTGGGTGGGTG 61.388 55.000 0.00 0.00 0.00 4.61
5313 6814 2.518349 CAAGCGTTGGGTGGGTGT 60.518 61.111 0.00 0.00 0.00 4.16
5314 6815 2.203294 AAGCGTTGGGTGGGTGTC 60.203 61.111 0.00 0.00 0.00 3.67
5315 6816 2.752807 AAGCGTTGGGTGGGTGTCT 61.753 57.895 0.00 0.00 0.00 3.41
5316 6817 2.958578 AAGCGTTGGGTGGGTGTCTG 62.959 60.000 0.00 0.00 0.00 3.51
5317 6818 2.508928 CGTTGGGTGGGTGTCTGT 59.491 61.111 0.00 0.00 0.00 3.41
5318 6819 1.891919 CGTTGGGTGGGTGTCTGTG 60.892 63.158 0.00 0.00 0.00 3.66
5319 6820 1.529796 GTTGGGTGGGTGTCTGTGA 59.470 57.895 0.00 0.00 0.00 3.58
5320 6821 0.110486 GTTGGGTGGGTGTCTGTGAT 59.890 55.000 0.00 0.00 0.00 3.06
5321 6822 1.349688 GTTGGGTGGGTGTCTGTGATA 59.650 52.381 0.00 0.00 0.00 2.15
5322 6823 1.735926 TGGGTGGGTGTCTGTGATAA 58.264 50.000 0.00 0.00 0.00 1.75
5323 6824 1.349688 TGGGTGGGTGTCTGTGATAAC 59.650 52.381 0.00 0.00 0.00 1.89
5324 6825 1.349688 GGGTGGGTGTCTGTGATAACA 59.650 52.381 0.00 0.00 0.00 2.41
5325 6826 2.026262 GGGTGGGTGTCTGTGATAACAT 60.026 50.000 0.00 0.00 0.00 2.71
5326 6827 3.561313 GGGTGGGTGTCTGTGATAACATT 60.561 47.826 0.00 0.00 0.00 2.71
5327 6828 4.079253 GGTGGGTGTCTGTGATAACATTT 58.921 43.478 0.00 0.00 0.00 2.32
5328 6829 4.522789 GGTGGGTGTCTGTGATAACATTTT 59.477 41.667 0.00 0.00 0.00 1.82
5329 6830 5.010617 GGTGGGTGTCTGTGATAACATTTTT 59.989 40.000 0.00 0.00 0.00 1.94
5330 6831 5.920273 GTGGGTGTCTGTGATAACATTTTTG 59.080 40.000 0.00 0.00 0.00 2.44
5331 6832 5.010516 TGGGTGTCTGTGATAACATTTTTGG 59.989 40.000 0.00 0.00 0.00 3.28
5332 6833 5.242838 GGGTGTCTGTGATAACATTTTTGGA 59.757 40.000 0.00 0.00 0.00 3.53
5333 6834 6.381801 GGTGTCTGTGATAACATTTTTGGAG 58.618 40.000 0.00 0.00 0.00 3.86
5334 6835 5.858581 GTGTCTGTGATAACATTTTTGGAGC 59.141 40.000 0.00 0.00 0.00 4.70
5335 6836 5.534278 TGTCTGTGATAACATTTTTGGAGCA 59.466 36.000 0.00 0.00 0.00 4.26
5336 6837 6.209192 TGTCTGTGATAACATTTTTGGAGCAT 59.791 34.615 0.00 0.00 0.00 3.79
5337 6838 6.749118 GTCTGTGATAACATTTTTGGAGCATC 59.251 38.462 0.00 0.00 0.00 3.91
5338 6839 5.639757 TGTGATAACATTTTTGGAGCATCG 58.360 37.500 0.00 0.00 34.37 3.84
5339 6840 5.182950 TGTGATAACATTTTTGGAGCATCGT 59.817 36.000 0.00 0.00 34.37 3.73
5340 6841 6.092748 GTGATAACATTTTTGGAGCATCGTT 58.907 36.000 0.00 0.00 34.37 3.85
5341 6842 6.586082 GTGATAACATTTTTGGAGCATCGTTT 59.414 34.615 0.00 0.00 34.37 3.60
5342 6843 7.116233 GTGATAACATTTTTGGAGCATCGTTTT 59.884 33.333 0.00 0.00 34.37 2.43
5343 6844 7.655328 TGATAACATTTTTGGAGCATCGTTTTT 59.345 29.630 0.00 0.00 34.37 1.94
5360 6861 2.421220 TTTTTGCCGGGTCTTCCAC 58.579 52.632 2.18 0.00 34.36 4.02
5361 6862 0.395862 TTTTTGCCGGGTCTTCCACA 60.396 50.000 2.18 0.00 34.36 4.17
5362 6863 0.395862 TTTTGCCGGGTCTTCCACAA 60.396 50.000 2.18 0.00 34.36 3.33
5363 6864 0.395862 TTTGCCGGGTCTTCCACAAA 60.396 50.000 2.18 0.00 38.27 2.83
5364 6865 0.178975 TTGCCGGGTCTTCCACAAAT 60.179 50.000 2.18 0.00 30.90 2.32
5365 6866 0.893270 TGCCGGGTCTTCCACAAATG 60.893 55.000 2.18 0.00 34.36 2.32
5366 6867 0.893727 GCCGGGTCTTCCACAAATGT 60.894 55.000 2.18 0.00 34.36 2.71
5367 6868 1.165270 CCGGGTCTTCCACAAATGTC 58.835 55.000 0.00 0.00 34.36 3.06
5368 6869 1.544537 CCGGGTCTTCCACAAATGTCA 60.545 52.381 0.00 0.00 34.36 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.902608 TGACTCCTTTGCCTTCTCCTA 58.097 47.619 0.00 0.00 0.00 2.94
1 2 1.734655 TGACTCCTTTGCCTTCTCCT 58.265 50.000 0.00 0.00 0.00 3.69
2 3 2.797177 ATGACTCCTTTGCCTTCTCC 57.203 50.000 0.00 0.00 0.00 3.71
3 4 4.207891 TGTATGACTCCTTTGCCTTCTC 57.792 45.455 0.00 0.00 0.00 2.87
4 5 4.566488 CCTTGTATGACTCCTTTGCCTTCT 60.566 45.833 0.00 0.00 0.00 2.85
5 6 3.691609 CCTTGTATGACTCCTTTGCCTTC 59.308 47.826 0.00 0.00 0.00 3.46
6 7 3.074538 ACCTTGTATGACTCCTTTGCCTT 59.925 43.478 0.00 0.00 0.00 4.35
7 8 2.644798 ACCTTGTATGACTCCTTTGCCT 59.355 45.455 0.00 0.00 0.00 4.75
8 9 3.073274 ACCTTGTATGACTCCTTTGCC 57.927 47.619 0.00 0.00 0.00 4.52
9 10 4.072131 TCAACCTTGTATGACTCCTTTGC 58.928 43.478 0.00 0.00 0.00 3.68
10 11 4.697352 CCTCAACCTTGTATGACTCCTTTG 59.303 45.833 0.00 0.00 0.00 2.77
11 12 4.597507 TCCTCAACCTTGTATGACTCCTTT 59.402 41.667 0.00 0.00 0.00 3.11
12 13 4.168101 TCCTCAACCTTGTATGACTCCTT 58.832 43.478 0.00 0.00 0.00 3.36
13 14 3.772025 CTCCTCAACCTTGTATGACTCCT 59.228 47.826 0.00 0.00 0.00 3.69
14 15 3.118592 CCTCCTCAACCTTGTATGACTCC 60.119 52.174 0.00 0.00 0.00 3.85
15 16 3.515901 ACCTCCTCAACCTTGTATGACTC 59.484 47.826 0.00 0.00 0.00 3.36
16 17 3.521727 ACCTCCTCAACCTTGTATGACT 58.478 45.455 0.00 0.00 0.00 3.41
17 18 3.983044 ACCTCCTCAACCTTGTATGAC 57.017 47.619 0.00 0.00 0.00 3.06
18 19 4.422057 TGTACCTCCTCAACCTTGTATGA 58.578 43.478 0.00 0.00 0.00 2.15
19 20 4.819105 TGTACCTCCTCAACCTTGTATG 57.181 45.455 0.00 0.00 0.00 2.39
20 21 4.595781 TGTTGTACCTCCTCAACCTTGTAT 59.404 41.667 0.00 0.00 41.92 2.29
21 22 3.968649 TGTTGTACCTCCTCAACCTTGTA 59.031 43.478 0.00 0.00 41.92 2.41
22 23 2.775384 TGTTGTACCTCCTCAACCTTGT 59.225 45.455 0.00 0.00 41.92 3.16
23 24 3.139077 GTGTTGTACCTCCTCAACCTTG 58.861 50.000 0.00 0.00 41.92 3.61
24 25 3.046374 AGTGTTGTACCTCCTCAACCTT 58.954 45.455 0.00 0.00 41.92 3.50
25 26 2.633481 GAGTGTTGTACCTCCTCAACCT 59.367 50.000 0.00 0.00 41.92 3.50
26 27 2.367567 TGAGTGTTGTACCTCCTCAACC 59.632 50.000 0.00 0.00 41.92 3.77
27 28 3.746045 TGAGTGTTGTACCTCCTCAAC 57.254 47.619 0.00 0.00 42.62 3.18
28 29 3.056821 CGATGAGTGTTGTACCTCCTCAA 60.057 47.826 5.94 0.00 35.93 3.02
29 30 2.492088 CGATGAGTGTTGTACCTCCTCA 59.508 50.000 4.70 4.70 36.67 3.86
30 31 2.753452 TCGATGAGTGTTGTACCTCCTC 59.247 50.000 0.00 0.00 0.00 3.71
31 32 2.803956 TCGATGAGTGTTGTACCTCCT 58.196 47.619 0.00 0.00 0.00 3.69
32 33 3.587797 TTCGATGAGTGTTGTACCTCC 57.412 47.619 0.00 0.00 0.00 4.30
33 34 4.567159 GGATTTCGATGAGTGTTGTACCTC 59.433 45.833 0.00 0.00 0.00 3.85
34 35 4.223032 AGGATTTCGATGAGTGTTGTACCT 59.777 41.667 0.00 0.00 0.00 3.08
35 36 4.504858 AGGATTTCGATGAGTGTTGTACC 58.495 43.478 0.00 0.00 0.00 3.34
36 37 5.408604 ACAAGGATTTCGATGAGTGTTGTAC 59.591 40.000 0.00 0.00 0.00 2.90
37 38 5.547465 ACAAGGATTTCGATGAGTGTTGTA 58.453 37.500 0.00 0.00 0.00 2.41
38 39 4.389374 ACAAGGATTTCGATGAGTGTTGT 58.611 39.130 0.00 0.00 0.00 3.32
39 40 4.434725 CGACAAGGATTTCGATGAGTGTTG 60.435 45.833 0.00 0.00 37.43 3.33
40 41 3.679980 CGACAAGGATTTCGATGAGTGTT 59.320 43.478 0.00 0.00 37.43 3.32
41 42 3.254060 CGACAAGGATTTCGATGAGTGT 58.746 45.455 0.00 0.00 37.43 3.55
42 43 2.604914 CCGACAAGGATTTCGATGAGTG 59.395 50.000 0.00 0.00 45.00 3.51
43 44 2.496070 TCCGACAAGGATTTCGATGAGT 59.504 45.455 0.00 0.00 45.98 3.41
44 45 3.165058 TCCGACAAGGATTTCGATGAG 57.835 47.619 0.00 0.00 45.98 2.90
63 64 4.475135 GCTTGCCGGGGAGGTCTC 62.475 72.222 2.18 0.00 43.70 3.36
65 66 4.115199 ATGCTTGCCGGGGAGGTC 62.115 66.667 2.18 0.00 43.70 3.85
66 67 4.115199 GATGCTTGCCGGGGAGGT 62.115 66.667 2.18 0.00 43.70 3.85
67 68 4.883354 GGATGCTTGCCGGGGAGG 62.883 72.222 2.18 0.00 44.97 4.30
68 69 4.113815 TGGATGCTTGCCGGGGAG 62.114 66.667 2.18 0.00 0.00 4.30
69 70 4.113815 CTGGATGCTTGCCGGGGA 62.114 66.667 2.18 0.00 0.00 4.81
70 71 3.643595 TTCTGGATGCTTGCCGGGG 62.644 63.158 2.18 0.00 32.48 5.73
71 72 2.045045 TTCTGGATGCTTGCCGGG 60.045 61.111 2.18 0.00 32.48 5.73
72 73 2.768492 GCTTCTGGATGCTTGCCGG 61.768 63.158 0.00 0.00 0.00 6.13
73 74 2.796651 GCTTCTGGATGCTTGCCG 59.203 61.111 1.93 0.00 0.00 5.69
74 75 1.099879 ATCGCTTCTGGATGCTTGCC 61.100 55.000 6.84 0.00 0.00 4.52
75 76 0.737219 AATCGCTTCTGGATGCTTGC 59.263 50.000 6.84 0.00 0.00 4.01
76 77 1.533338 GCAATCGCTTCTGGATGCTTG 60.533 52.381 6.84 6.53 34.30 4.01
77 78 0.737219 GCAATCGCTTCTGGATGCTT 59.263 50.000 6.84 0.00 34.30 3.91
78 79 1.099879 GGCAATCGCTTCTGGATGCT 61.100 55.000 6.84 0.00 38.60 3.79
84 85 1.699656 CTGACGGGCAATCGCTTCTG 61.700 60.000 0.00 0.00 38.60 3.02
114 115 1.300233 CCAAGCCGGATCTAGACGC 60.300 63.158 5.05 0.00 36.56 5.19
126 127 1.949257 CACAACGGTTCTCCAAGCC 59.051 57.895 0.00 0.00 0.00 4.35
132 133 2.946762 GCCTGCACAACGGTTCTC 59.053 61.111 0.00 0.00 0.00 2.87
140 141 2.253758 GCTCTTGACGCCTGCACAA 61.254 57.895 0.00 0.00 0.00 3.33
142 143 3.782244 CGCTCTTGACGCCTGCAC 61.782 66.667 0.00 0.00 0.00 4.57
144 145 4.742201 TCCGCTCTTGACGCCTGC 62.742 66.667 0.00 0.00 0.00 4.85
166 167 1.728426 CACGTCGTCTGACCCGTTC 60.728 63.158 14.95 0.00 42.37 3.95
169 170 2.176055 CTCACGTCGTCTGACCCG 59.824 66.667 11.53 11.53 42.37 5.28
181 182 2.671177 CGGCTCCTTGTTGCTCACG 61.671 63.158 0.00 0.00 0.00 4.35
226 227 2.422591 GTTGGTCGTTCGTGGGGA 59.577 61.111 0.00 0.00 0.00 4.81
253 256 5.461526 GTGGTGAAATAGGCAAAGAAGAAC 58.538 41.667 0.00 0.00 0.00 3.01
270 273 0.526211 CGATGACGAGAAGGTGGTGA 59.474 55.000 0.00 0.00 42.66 4.02
276 279 1.405463 TGATCCACGATGACGAGAAGG 59.595 52.381 0.00 0.00 42.66 3.46
286 289 0.177836 TGCCGATTGTGATCCACGAT 59.822 50.000 0.00 0.00 40.74 3.73
289 292 1.600957 CTGATGCCGATTGTGATCCAC 59.399 52.381 0.00 0.00 34.56 4.02
307 310 2.022129 GTCGCCTGGTTCACGTCTG 61.022 63.158 0.00 0.00 0.00 3.51
319 322 2.482490 GGTAATGGTATTGTCGTCGCCT 60.482 50.000 0.00 0.00 0.00 5.52
321 324 2.283351 GTGGTAATGGTATTGTCGTCGC 59.717 50.000 0.00 0.00 0.00 5.19
331 334 1.603306 GGTGGCGGTGGTAATGGTA 59.397 57.895 0.00 0.00 0.00 3.25
345 348 4.087892 CAGTGGAGGAGGCGGTGG 62.088 72.222 0.00 0.00 0.00 4.61
346 349 4.087892 CCAGTGGAGGAGGCGGTG 62.088 72.222 1.68 0.00 0.00 4.94
347 350 4.640690 ACCAGTGGAGGAGGCGGT 62.641 66.667 18.40 0.00 0.00 5.68
348 351 4.087892 CACCAGTGGAGGAGGCGG 62.088 72.222 18.40 0.00 0.00 6.13
365 368 1.095600 GGGCGACTTTCAAATCCCTC 58.904 55.000 0.00 0.00 0.00 4.30
377 380 1.600916 GCAAAGGAAGTGGGCGACT 60.601 57.895 0.00 0.00 35.94 4.18
379 382 1.600636 CAGCAAAGGAAGTGGGCGA 60.601 57.895 0.00 0.00 0.00 5.54
389 392 2.306847 ACAAACCCTACACAGCAAAGG 58.693 47.619 0.00 0.00 0.00 3.11
394 397 2.548480 GACTCAACAAACCCTACACAGC 59.452 50.000 0.00 0.00 0.00 4.40
395 398 3.139077 GGACTCAACAAACCCTACACAG 58.861 50.000 0.00 0.00 0.00 3.66
459 462 2.075355 TTGTTCCCGGATGCCAAGGT 62.075 55.000 0.73 0.00 0.00 3.50
473 476 0.883370 AGGAGGGAACGCGTTTGTTC 60.883 55.000 27.32 21.02 45.91 3.18
482 485 1.521681 GAATGCGGAGGAGGGAACG 60.522 63.158 0.00 0.00 0.00 3.95
486 489 2.190578 GGTGAATGCGGAGGAGGG 59.809 66.667 0.00 0.00 0.00 4.30
494 497 1.361668 CGTCCAAGGAGGTGAATGCG 61.362 60.000 0.73 0.00 39.02 4.73
506 509 4.389576 GCGTTGGCAGCGTCCAAG 62.390 66.667 24.20 8.36 45.90 3.61
547 550 3.583276 ATCGGCTCGTGGTTTGCGA 62.583 57.895 0.00 0.00 36.85 5.10
552 555 0.250124 TGTGAAATCGGCTCGTGGTT 60.250 50.000 0.00 0.00 0.00 3.67
557 560 1.606606 GCTTTTGTGAAATCGGCTCG 58.393 50.000 0.00 0.00 0.00 5.03
562 565 1.664643 GCGCGGCTTTTGTGAAATCG 61.665 55.000 8.83 0.00 0.00 3.34
577 580 3.740128 ATGTGGGGAAGCTAGCGCG 62.740 63.158 9.55 0.00 42.32 6.86
578 581 1.889573 GATGTGGGGAAGCTAGCGC 60.890 63.158 9.55 0.00 0.00 5.92
580 583 0.107643 GGAGATGTGGGGAAGCTAGC 59.892 60.000 6.62 6.62 0.00 3.42
581 584 1.691434 GAGGAGATGTGGGGAAGCTAG 59.309 57.143 0.00 0.00 0.00 3.42
582 585 1.692762 GGAGGAGATGTGGGGAAGCTA 60.693 57.143 0.00 0.00 0.00 3.32
583 586 0.985490 GGAGGAGATGTGGGGAAGCT 60.985 60.000 0.00 0.00 0.00 3.74
584 587 1.529309 GGAGGAGATGTGGGGAAGC 59.471 63.158 0.00 0.00 0.00 3.86
585 588 1.690219 CGGGAGGAGATGTGGGGAAG 61.690 65.000 0.00 0.00 0.00 3.46
587 590 2.041922 CGGGAGGAGATGTGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
588 591 3.866582 GCGGGAGGAGATGTGGGG 61.867 72.222 0.00 0.00 0.00 4.96
590 593 3.147595 TCGCGGGAGGAGATGTGG 61.148 66.667 6.13 0.00 0.00 4.17
591 594 2.105128 GTCGCGGGAGGAGATGTG 59.895 66.667 6.13 0.00 0.00 3.21
592 595 3.148279 GGTCGCGGGAGGAGATGT 61.148 66.667 6.13 0.00 0.00 3.06
604 607 2.742372 AACGATGGTGCAGGTCGC 60.742 61.111 13.35 0.00 38.85 5.19
643 646 1.613925 CCAAGCTATTCGATCGGGAGA 59.386 52.381 16.41 0.83 46.90 3.71
675 678 0.099082 GATCCACTCCGTCTCGTGAC 59.901 60.000 7.56 7.56 39.70 3.67
676 679 0.035343 AGATCCACTCCGTCTCGTGA 60.035 55.000 0.00 0.00 33.04 4.35
685 688 1.573108 TTCCTCACCAGATCCACTCC 58.427 55.000 0.00 0.00 0.00 3.85
686 689 2.768527 TCATTCCTCACCAGATCCACTC 59.231 50.000 0.00 0.00 0.00 3.51
698 701 2.435805 CGATCCCTCCTTTCATTCCTCA 59.564 50.000 0.00 0.00 0.00 3.86
705 708 0.252513 TCACCCGATCCCTCCTTTCA 60.253 55.000 0.00 0.00 0.00 2.69
708 711 0.252742 ACTTCACCCGATCCCTCCTT 60.253 55.000 0.00 0.00 0.00 3.36
711 714 0.902531 TTCACTTCACCCGATCCCTC 59.097 55.000 0.00 0.00 0.00 4.30
724 728 3.120321 TGTACCTTGTCGCATTCACTT 57.880 42.857 0.00 0.00 0.00 3.16
727 731 3.120321 ACTTGTACCTTGTCGCATTCA 57.880 42.857 0.00 0.00 0.00 2.57
728 732 3.991773 TGTACTTGTACCTTGTCGCATTC 59.008 43.478 8.25 0.00 0.00 2.67
736 740 4.377021 TCACTGCTTGTACTTGTACCTTG 58.623 43.478 8.25 1.00 0.00 3.61
743 747 9.102757 ACATATATTTCTCACTGCTTGTACTTG 57.897 33.333 0.00 0.00 0.00 3.16
749 753 8.429493 TCTTGACATATATTTCTCACTGCTTG 57.571 34.615 0.82 0.00 0.00 4.01
750 754 9.453572 TTTCTTGACATATATTTCTCACTGCTT 57.546 29.630 0.82 0.00 0.00 3.91
779 789 6.949352 AGAGATGTGTGATTGTTTCTTTGT 57.051 33.333 0.00 0.00 0.00 2.83
828 1667 1.559682 CCCGATTTTCTTGGGGAGAGA 59.440 52.381 0.00 0.00 44.32 3.10
829 1668 2.044123 CCCGATTTTCTTGGGGAGAG 57.956 55.000 0.00 0.00 44.32 3.20
837 1676 2.493278 CTGATTGTGCCCCGATTTTCTT 59.507 45.455 0.00 0.00 0.00 2.52
838 1677 2.094675 CTGATTGTGCCCCGATTTTCT 58.905 47.619 0.00 0.00 0.00 2.52
878 1728 1.296715 CCGTAGGCTGCCTCTGTTT 59.703 57.895 27.16 2.17 46.14 2.83
953 1803 3.414700 GCGGTGTGAAGGCGAGTG 61.415 66.667 0.00 0.00 0.00 3.51
981 1831 1.425694 GAGGGTGGAAGATAGGGACC 58.574 60.000 0.00 0.00 0.00 4.46
1016 1866 1.688735 GGCAAGGCAAGGAAAAGAGTT 59.311 47.619 0.00 0.00 0.00 3.01
1070 1920 1.557651 GGGACGAGTCGTAGCAAATC 58.442 55.000 19.93 3.80 41.37 2.17
1071 1921 0.175073 GGGGACGAGTCGTAGCAAAT 59.825 55.000 19.93 0.00 41.37 2.32
1925 2832 2.303022 TCCAGTGAGTTCAGGTTCATCC 59.697 50.000 0.00 0.00 0.00 3.51
2018 2925 5.178797 TGAGAAGGCAGCTAAGTGTAATTC 58.821 41.667 0.00 0.00 0.00 2.17
2020 2927 4.826274 TGAGAAGGCAGCTAAGTGTAAT 57.174 40.909 0.00 0.00 0.00 1.89
2022 2929 3.769300 TCATGAGAAGGCAGCTAAGTGTA 59.231 43.478 0.00 0.00 0.00 2.90
2025 2932 2.836981 ACTCATGAGAAGGCAGCTAAGT 59.163 45.455 29.27 0.00 0.00 2.24
2045 2956 5.382303 ACAATCGATCAAAACGTTCATGAC 58.618 37.500 16.23 10.70 0.00 3.06
2046 2957 5.408299 AGACAATCGATCAAAACGTTCATGA 59.592 36.000 16.23 16.23 0.00 3.07
2047 2958 5.621422 AGACAATCGATCAAAACGTTCATG 58.379 37.500 0.00 4.35 0.00 3.07
2048 2959 5.862924 AGACAATCGATCAAAACGTTCAT 57.137 34.783 0.00 0.00 0.00 2.57
2050 2961 5.675970 TCAAGACAATCGATCAAAACGTTC 58.324 37.500 0.00 0.00 0.00 3.95
2051 2962 5.666969 TCAAGACAATCGATCAAAACGTT 57.333 34.783 0.00 0.00 0.00 3.99
2052 2963 5.408299 TCATCAAGACAATCGATCAAAACGT 59.592 36.000 0.00 0.00 0.00 3.99
2053 2964 5.857394 TCATCAAGACAATCGATCAAAACG 58.143 37.500 0.00 0.00 0.00 3.60
2054 2965 9.214953 GTTATCATCAAGACAATCGATCAAAAC 57.785 33.333 0.00 0.00 0.00 2.43
2055 2966 8.945057 TGTTATCATCAAGACAATCGATCAAAA 58.055 29.630 0.00 0.00 0.00 2.44
2056 2967 8.491331 TGTTATCATCAAGACAATCGATCAAA 57.509 30.769 0.00 0.00 0.00 2.69
2057 2968 8.491331 TTGTTATCATCAAGACAATCGATCAA 57.509 30.769 0.00 0.00 0.00 2.57
2058 2969 7.254556 GCTTGTTATCATCAAGACAATCGATCA 60.255 37.037 0.00 0.00 43.17 2.92
2059 2970 7.042187 AGCTTGTTATCATCAAGACAATCGATC 60.042 37.037 0.00 0.00 43.17 3.69
2060 2971 6.765036 AGCTTGTTATCATCAAGACAATCGAT 59.235 34.615 9.40 0.00 43.17 3.59
2061 2972 6.108687 AGCTTGTTATCATCAAGACAATCGA 58.891 36.000 9.40 0.00 43.17 3.59
2062 2973 6.355397 AGCTTGTTATCATCAAGACAATCG 57.645 37.500 9.40 0.00 43.17 3.34
2274 3186 6.988580 TGCCTTCAGTTCATATACAAGATCAG 59.011 38.462 0.00 0.00 0.00 2.90
2299 3211 4.678256 TCTTGGAGTAATCCTCACTCAGT 58.322 43.478 11.10 0.00 43.50 3.41
2312 3224 8.260818 CCTTCTGAAGAATAACATCTTGGAGTA 58.739 37.037 18.68 0.00 39.70 2.59
2383 3295 8.971321 CCACATTTCTTTACAATTTCAACTGAG 58.029 33.333 0.00 0.00 0.00 3.35
2431 3343 3.270877 GGTTAACAGACTAGCCATGGTG 58.729 50.000 14.67 4.82 0.00 4.17
2464 3376 5.087323 ACCTTCATCCACTCTTCTCTTGTA 58.913 41.667 0.00 0.00 0.00 2.41
2524 3436 4.920999 TCATGTTCATTTCCTCCACATCA 58.079 39.130 0.00 0.00 0.00 3.07
2551 3463 8.041323 TGAGGAAGGTCATTATAACTCAAAGAC 58.959 37.037 0.00 0.00 31.51 3.01
2569 3481 5.128919 CAGGTCCTTAAATGATGAGGAAGG 58.871 45.833 0.00 0.00 41.02 3.46
2869 3781 2.419667 GGGCGCAGTACTTGTCTTTTA 58.580 47.619 10.83 0.00 0.00 1.52
3029 3941 7.394016 CCATCTAGATCTAGCACTCTTAGAGA 58.606 42.308 22.81 5.48 32.07 3.10
3100 4012 7.928706 CGAATCCTTAGGTATCTCAACTGAAAT 59.071 37.037 0.00 0.00 0.00 2.17
3210 4122 2.543777 ACTTGAAGGCAGTTCGCTTA 57.456 45.000 0.00 0.00 41.91 3.09
3224 4136 7.681939 AATTCCGAAGTTTAGCAATACTTGA 57.318 32.000 2.62 0.00 34.88 3.02
3316 4228 1.067974 TCCACAACTACCAGTGACACG 59.932 52.381 0.00 0.00 37.97 4.49
3349 4261 0.458025 GCTCTTGTAGCGCGGTTACT 60.458 55.000 19.09 1.88 42.53 2.24
3469 4381 0.535335 TAGAGGTGCCTAGTTTGCCG 59.465 55.000 0.00 0.00 0.00 5.69
3527 4439 2.290577 ACCAGGAATCCAGCAAGAAGTC 60.291 50.000 0.61 0.00 0.00 3.01
3533 4445 1.304381 GGCACCAGGAATCCAGCAA 60.304 57.895 0.61 0.00 0.00 3.91
3601 4513 1.748591 GCCATCCACACTGGGATCTTC 60.749 57.143 0.00 0.00 45.91 2.87
3666 4578 2.742372 CCTGGACGGTTTCCTGCG 60.742 66.667 0.00 0.00 46.10 5.18
3667 4579 1.966451 CACCTGGACGGTTTCCTGC 60.966 63.158 0.00 0.00 46.37 4.85
3677 4589 3.050275 GTCCGCAAGCACCTGGAC 61.050 66.667 0.00 3.00 43.60 4.02
3738 4650 1.004745 TGAGACATCTTTCTTGGGGGC 59.995 52.381 0.00 0.00 0.00 5.80
3780 4692 5.008415 ACAAAGTTGAGCTTCTTCAGACATG 59.992 40.000 0.00 0.00 36.17 3.21
3793 4705 1.967319 TCCAGTGGACAAAGTTGAGC 58.033 50.000 8.12 0.00 0.00 4.26
4023 4935 1.350684 TGGGAAGCATACTGACAGCAA 59.649 47.619 1.25 0.00 0.00 3.91
4057 4969 3.897141 TCACGGAACCTATGCAATGTA 57.103 42.857 0.00 0.00 0.00 2.29
4125 5037 0.250640 GTGGATGCAGGCTAGGATGG 60.251 60.000 0.00 0.00 0.00 3.51
4131 5043 3.181451 CCTTAATGAGTGGATGCAGGCTA 60.181 47.826 0.00 0.00 0.00 3.93
4141 5053 7.012704 CCAGTCAATCAATACCTTAATGAGTGG 59.987 40.741 11.14 11.14 45.29 4.00
4145 5057 6.828273 CCACCAGTCAATCAATACCTTAATGA 59.172 38.462 0.00 0.00 0.00 2.57
4163 5079 2.067365 GGTTTGAAGGAACCACCAGT 57.933 50.000 2.08 0.00 46.66 4.00
4203 5119 1.080230 CAGCAGAGTCGACACCCAG 60.080 63.158 19.50 5.87 0.00 4.45
4209 5125 1.623359 CTAAGTGCAGCAGAGTCGAC 58.377 55.000 7.70 7.70 0.00 4.20
4217 5133 3.433306 AAACCATACCTAAGTGCAGCA 57.567 42.857 0.00 0.00 0.00 4.41
4262 5331 2.695147 ACCAAGACAAAGGCAAAAGGAG 59.305 45.455 0.00 0.00 0.00 3.69
4271 5341 0.889186 CCGGTCCACCAAGACAAAGG 60.889 60.000 0.00 0.00 38.59 3.11
4281 5351 1.834188 ATCAATTTCACCGGTCCACC 58.166 50.000 2.59 0.00 0.00 4.61
4285 5355 4.638421 TGGATTGTATCAATTTCACCGGTC 59.362 41.667 2.59 0.00 0.00 4.79
4302 5372 0.251165 ACACCCCGGAAGTTGGATTG 60.251 55.000 0.73 0.00 0.00 2.67
4303 5373 0.037734 GACACCCCGGAAGTTGGATT 59.962 55.000 0.73 0.00 0.00 3.01
4364 5565 1.765904 TGCCCTGAGACACAGTTACAA 59.234 47.619 0.00 0.00 44.40 2.41
4371 5572 1.059098 AAGACATGCCCTGAGACACA 58.941 50.000 0.00 0.00 0.00 3.72
4379 5580 2.639839 AGTCAACACTAAGACATGCCCT 59.360 45.455 0.00 0.00 37.23 5.19
4391 5592 3.555795 CCACATGTCTAGCAGTCAACACT 60.556 47.826 0.00 0.00 0.00 3.55
4395 5596 2.352715 CGTCCACATGTCTAGCAGTCAA 60.353 50.000 0.00 0.00 0.00 3.18
4396 5597 1.202348 CGTCCACATGTCTAGCAGTCA 59.798 52.381 0.00 0.00 0.00 3.41
4397 5598 1.472878 TCGTCCACATGTCTAGCAGTC 59.527 52.381 0.00 0.00 0.00 3.51
4398 5599 1.474478 CTCGTCCACATGTCTAGCAGT 59.526 52.381 0.00 0.00 0.00 4.40
4399 5600 1.474478 ACTCGTCCACATGTCTAGCAG 59.526 52.381 0.00 0.00 0.00 4.24
4400 5601 1.545841 ACTCGTCCACATGTCTAGCA 58.454 50.000 0.00 0.00 0.00 3.49
4401 5602 2.656560 AACTCGTCCACATGTCTAGC 57.343 50.000 0.00 0.00 0.00 3.42
4402 5603 5.230942 AGAAAAACTCGTCCACATGTCTAG 58.769 41.667 0.00 0.00 0.00 2.43
4403 5604 5.209818 AGAAAAACTCGTCCACATGTCTA 57.790 39.130 0.00 0.00 0.00 2.59
4404 5605 4.073293 AGAAAAACTCGTCCACATGTCT 57.927 40.909 0.00 0.00 0.00 3.41
4410 5611 4.127907 AGGAAGAAGAAAAACTCGTCCAC 58.872 43.478 6.78 0.00 33.38 4.02
4445 5647 2.213499 CGGAGAGACAGTTGCAAGTTT 58.787 47.619 3.38 0.00 0.00 2.66
4446 5648 1.541233 CCGGAGAGACAGTTGCAAGTT 60.541 52.381 3.38 0.00 0.00 2.66
4447 5649 0.034059 CCGGAGAGACAGTTGCAAGT 59.966 55.000 0.00 0.00 0.00 3.16
4448 5650 0.671781 CCCGGAGAGACAGTTGCAAG 60.672 60.000 0.73 0.00 0.00 4.01
4449 5651 1.371183 CCCGGAGAGACAGTTGCAA 59.629 57.895 0.73 0.00 0.00 4.08
4450 5652 0.541063 TACCCGGAGAGACAGTTGCA 60.541 55.000 0.73 0.00 0.00 4.08
4451 5653 0.824759 ATACCCGGAGAGACAGTTGC 59.175 55.000 0.73 0.00 0.00 4.17
4452 5654 1.065701 CGATACCCGGAGAGACAGTTG 59.934 57.143 0.73 0.00 33.91 3.16
4459 5661 0.527817 GCAACACGATACCCGGAGAG 60.528 60.000 0.73 0.00 43.93 3.20
4543 5749 6.072508 GGTACGATGATAATCACATGCCAAAT 60.073 38.462 0.00 0.00 0.00 2.32
4544 5750 5.238432 GGTACGATGATAATCACATGCCAAA 59.762 40.000 0.00 0.00 0.00 3.28
4605 5813 4.385643 CCTCTTGGCATAAAAGGGAGATCA 60.386 45.833 0.00 0.00 0.00 2.92
4627 5835 2.417243 CGAACATGGGCAAAATCCTTCC 60.417 50.000 0.00 0.00 0.00 3.46
4702 5910 9.818796 TTTGTTTTTGTTTTTGCAGATCTTAAC 57.181 25.926 0.00 0.00 0.00 2.01
4734 5945 3.112263 TCGATACCCCACTTCTCCAATT 58.888 45.455 0.00 0.00 0.00 2.32
4735 5946 2.759355 TCGATACCCCACTTCTCCAAT 58.241 47.619 0.00 0.00 0.00 3.16
4736 5947 2.241281 TCGATACCCCACTTCTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
4833 6044 4.589798 TGCCAGGGCTTACTATAATAACGA 59.410 41.667 12.19 0.00 42.51 3.85
4834 6045 4.689345 GTGCCAGGGCTTACTATAATAACG 59.311 45.833 12.19 0.00 42.51 3.18
4835 6046 5.001874 GGTGCCAGGGCTTACTATAATAAC 58.998 45.833 12.19 0.00 42.51 1.89
4836 6047 4.911522 AGGTGCCAGGGCTTACTATAATAA 59.088 41.667 12.19 0.00 42.51 1.40
4851 6062 2.012673 GCTATGTTGAGAAGGTGCCAG 58.987 52.381 0.00 0.00 0.00 4.85
4882 6093 5.222086 ACTAATATAGGAGGGGTTTTCCGT 58.778 41.667 0.00 0.00 41.82 4.69
4884 6095 7.145474 TGAACTAATATAGGAGGGGTTTTCC 57.855 40.000 0.00 0.00 39.75 3.13
4996 6497 3.121944 CCGCATGACGCTGTAAATATCTC 59.878 47.826 0.00 0.00 41.76 2.75
4997 6498 3.059884 CCGCATGACGCTGTAAATATCT 58.940 45.455 0.00 0.00 41.76 1.98
4998 6499 2.157668 CCCGCATGACGCTGTAAATATC 59.842 50.000 0.00 0.00 41.76 1.63
4999 6500 2.143122 CCCGCATGACGCTGTAAATAT 58.857 47.619 0.00 0.00 41.76 1.28
5000 6501 1.577468 CCCGCATGACGCTGTAAATA 58.423 50.000 0.00 0.00 41.76 1.40
5001 6502 1.714899 GCCCGCATGACGCTGTAAAT 61.715 55.000 0.00 0.00 41.76 1.40
5002 6503 2.395360 GCCCGCATGACGCTGTAAA 61.395 57.895 0.00 0.00 41.76 2.01
5003 6504 2.817834 GCCCGCATGACGCTGTAA 60.818 61.111 0.00 0.00 41.76 2.41
5004 6505 3.770040 AGCCCGCATGACGCTGTA 61.770 61.111 0.00 0.00 41.76 2.74
5031 6532 2.499693 TCTTGAGATTGGTCGCCATGTA 59.500 45.455 0.00 0.00 31.53 2.29
5076 6577 5.880901 AGAAGGAGTAATTTTGAGGCTCAA 58.119 37.500 25.38 25.38 34.03 3.02
5115 6616 0.739462 CCGAGTTTGAGGCGTGCATA 60.739 55.000 0.00 0.00 0.00 3.14
5161 6662 4.440663 GCTGGAGGAATAAATTGAAGCCAC 60.441 45.833 0.00 0.00 0.00 5.01
5170 6671 4.886489 GCAGAAGAAGCTGGAGGAATAAAT 59.114 41.667 0.00 0.00 36.41 1.40
5216 6717 2.278857 ATAGCTTCGGACTGCGCG 60.279 61.111 0.00 0.00 0.00 6.86
5217 6718 1.211818 CTCATAGCTTCGGACTGCGC 61.212 60.000 0.00 0.00 0.00 6.09
5218 6719 1.211818 GCTCATAGCTTCGGACTGCG 61.212 60.000 0.00 0.00 38.45 5.18
5231 6732 6.214208 ACCTAGGCAAATATCATCTGCTCATA 59.786 38.462 9.30 0.00 36.32 2.15
5280 6781 1.411394 CTTGAAACGTTGGCATGCAG 58.589 50.000 21.36 9.95 0.00 4.41
5307 6808 5.010516 CCAAAAATGTTATCACAGACACCCA 59.989 40.000 0.00 0.00 35.94 4.51
5308 6809 5.242838 TCCAAAAATGTTATCACAGACACCC 59.757 40.000 0.00 0.00 35.94 4.61
5309 6810 6.325919 TCCAAAAATGTTATCACAGACACC 57.674 37.500 0.00 0.00 35.94 4.16
5310 6811 5.858581 GCTCCAAAAATGTTATCACAGACAC 59.141 40.000 0.00 0.00 35.94 3.67
5311 6812 5.534278 TGCTCCAAAAATGTTATCACAGACA 59.466 36.000 0.00 0.00 35.94 3.41
5312 6813 6.012658 TGCTCCAAAAATGTTATCACAGAC 57.987 37.500 0.00 0.00 35.94 3.51
5313 6814 6.403527 CGATGCTCCAAAAATGTTATCACAGA 60.404 38.462 0.00 0.00 35.94 3.41
5314 6815 5.740569 CGATGCTCCAAAAATGTTATCACAG 59.259 40.000 0.00 0.00 35.94 3.66
5315 6816 5.182950 ACGATGCTCCAAAAATGTTATCACA 59.817 36.000 0.00 0.00 37.31 3.58
5316 6817 5.640732 ACGATGCTCCAAAAATGTTATCAC 58.359 37.500 0.00 0.00 0.00 3.06
5317 6818 5.895636 ACGATGCTCCAAAAATGTTATCA 57.104 34.783 0.00 0.00 0.00 2.15
5318 6819 7.581011 AAAACGATGCTCCAAAAATGTTATC 57.419 32.000 0.00 0.00 0.00 1.75
5319 6820 7.961325 AAAAACGATGCTCCAAAAATGTTAT 57.039 28.000 0.00 0.00 0.00 1.89
5342 6843 0.395862 TGTGGAAGACCCGGCAAAAA 60.396 50.000 0.00 0.00 37.93 1.94
5343 6844 0.395862 TTGTGGAAGACCCGGCAAAA 60.396 50.000 0.00 0.00 37.93 2.44
5344 6845 0.395862 TTTGTGGAAGACCCGGCAAA 60.396 50.000 0.00 0.00 38.87 3.68
5345 6846 0.178975 ATTTGTGGAAGACCCGGCAA 60.179 50.000 0.00 0.00 37.93 4.52
5346 6847 0.893270 CATTTGTGGAAGACCCGGCA 60.893 55.000 0.00 0.00 37.93 5.69
5347 6848 0.893727 ACATTTGTGGAAGACCCGGC 60.894 55.000 0.00 0.00 37.93 6.13
5348 6849 1.165270 GACATTTGTGGAAGACCCGG 58.835 55.000 0.00 0.00 37.93 5.73
5349 6850 1.890876 TGACATTTGTGGAAGACCCG 58.109 50.000 0.00 0.00 37.93 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.