Multiple sequence alignment - TraesCS5D01G389000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G389000 chr5D 100.000 3428 0 0 1 3428 458453014 458456441 0.000000e+00 6331
1 TraesCS5D01G389000 chr5D 82.667 450 58 11 93 530 479128241 479127800 6.940000e-102 381
2 TraesCS5D01G389000 chr5A 95.655 2854 90 18 571 3400 576337288 576340131 0.000000e+00 4553
3 TraesCS5D01G389000 chr5A 74.957 579 117 20 1304 1865 69140929 69141496 1.230000e-59 241
4 TraesCS5D01G389000 chr5B 95.250 2337 60 14 572 2892 561686965 561689266 0.000000e+00 3653
5 TraesCS5D01G389000 chr5B 72.795 941 186 50 1304 2194 78221002 78220082 4.390000e-64 255
6 TraesCS5D01G389000 chr2A 90.710 549 26 8 1 525 528136058 528136605 0.000000e+00 708
7 TraesCS5D01G389000 chr3D 88.022 551 33 11 1 527 510266958 510267499 3.760000e-174 621
8 TraesCS5D01G389000 chr6D 81.591 440 65 11 97 526 450472787 450473220 1.960000e-92 350
9 TraesCS5D01G389000 chr6B 81.222 442 67 11 97 526 683578056 683578493 3.280000e-90 342
10 TraesCS5D01G389000 chr6A 79.955 449 76 11 93 530 555936454 555936899 5.520000e-83 318
11 TraesCS5D01G389000 chr6A 82.759 319 39 12 220 526 145218618 145218304 1.570000e-68 270
12 TraesCS5D01G389000 chr4B 76.940 451 90 10 88 527 20564374 20564821 9.500000e-61 244
13 TraesCS5D01G389000 chr7A 89.655 174 17 1 1243 1416 202520830 202520658 1.600000e-53 220
14 TraesCS5D01G389000 chr7A 95.385 65 3 0 1871 1935 202520655 202520591 1.680000e-18 104
15 TraesCS5D01G389000 chr2B 75.615 447 101 5 88 527 373319281 373319726 7.450000e-52 215
16 TraesCS5D01G389000 chr7B 88.679 159 17 1 1258 1416 156428587 156428430 3.490000e-45 193
17 TraesCS5D01G389000 chr7D 85.475 179 17 5 1243 1416 192928841 192928667 9.780000e-41 178
18 TraesCS5D01G389000 chr7D 94.805 77 4 0 1859 1935 192928669 192928593 1.670000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G389000 chr5D 458453014 458456441 3427 False 6331 6331 100.000 1 3428 1 chr5D.!!$F1 3427
1 TraesCS5D01G389000 chr5A 576337288 576340131 2843 False 4553 4553 95.655 571 3400 1 chr5A.!!$F2 2829
2 TraesCS5D01G389000 chr5A 69140929 69141496 567 False 241 241 74.957 1304 1865 1 chr5A.!!$F1 561
3 TraesCS5D01G389000 chr5B 561686965 561689266 2301 False 3653 3653 95.250 572 2892 1 chr5B.!!$F1 2320
4 TraesCS5D01G389000 chr5B 78220082 78221002 920 True 255 255 72.795 1304 2194 1 chr5B.!!$R1 890
5 TraesCS5D01G389000 chr2A 528136058 528136605 547 False 708 708 90.710 1 525 1 chr2A.!!$F1 524
6 TraesCS5D01G389000 chr3D 510266958 510267499 541 False 621 621 88.022 1 527 1 chr3D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.036010 AAGCTGAACACAGATCGGGG 60.036 55.000 0.00 0.00 33.94 5.73 F
216 235 1.089112 CGGACTCATGCTTGCATTGA 58.911 50.000 5.24 6.49 0.00 2.57 F
1212 1253 1.298667 GCCGTACAACATGTCCCCT 59.701 57.895 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2303 2.283173 TCTCCTGTCTCTGCGGCA 60.283 61.111 1.29 1.29 0.00 5.69 R
2241 2315 3.616721 ACGCCGCTGTTGTCTCCT 61.617 61.111 0.00 0.00 0.00 3.69 R
2914 2994 0.107897 AATATGACGCGTCAAGCCCA 60.108 50.000 41.74 24.99 43.58 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.399181 TGCCCGGTCCTTAGCCTG 61.399 66.667 0.00 0.00 0.00 4.85
81 82 2.156504 CGTGTGAAGCTGAACACAGATC 59.843 50.000 24.21 12.43 45.61 2.75
84 85 1.338105 TGAAGCTGAACACAGATCGGG 60.338 52.381 0.00 0.00 33.94 5.14
85 86 0.036010 AAGCTGAACACAGATCGGGG 60.036 55.000 0.00 0.00 33.94 5.73
122 141 1.126488 TGAGAGATGATGGAGGTGGC 58.874 55.000 0.00 0.00 0.00 5.01
197 216 7.051000 AGACTGAAATTCTTGCTATAAGGGAC 58.949 38.462 0.00 0.00 0.00 4.46
216 235 1.089112 CGGACTCATGCTTGCATTGA 58.911 50.000 5.24 6.49 0.00 2.57
621 646 5.130705 TGAGGAGCCTCTTCTTATAGACA 57.869 43.478 16.87 0.00 43.12 3.41
623 648 5.958380 TGAGGAGCCTCTTCTTATAGACAAA 59.042 40.000 16.87 0.00 43.12 2.83
678 708 7.639162 TCATACAGAAGAAGAAAAACGACTC 57.361 36.000 0.00 0.00 0.00 3.36
769 800 5.710099 CCTAGGCTCCAAAACTTGTGAAATA 59.290 40.000 0.00 0.00 0.00 1.40
881 912 1.374252 TCTCAACGGCTTTCTCGCC 60.374 57.895 0.00 0.00 46.68 5.54
1212 1253 1.298667 GCCGTACAACATGTCCCCT 59.701 57.895 0.00 0.00 0.00 4.79
2214 2288 2.544277 CGTCGTGGAGTACAACAAGGAA 60.544 50.000 0.00 0.00 0.00 3.36
2316 2390 2.281484 ATCAAGGTGTGGCGCGTT 60.281 55.556 8.43 0.00 0.00 4.84
2373 2450 1.079127 CGAGGGGTCGCAGATGTTT 60.079 57.895 0.00 0.00 40.67 2.83
2437 2514 0.100146 GTTCCGCTAAGGTCGTCGAT 59.900 55.000 0.00 0.00 41.99 3.59
2487 2564 7.584987 AGTTTTGAACATCTTGACGGATTAAG 58.415 34.615 0.00 0.00 0.00 1.85
2544 2621 2.917971 GTTGAAGACGATCGGTGAGAAG 59.082 50.000 20.98 0.00 0.00 2.85
2606 2683 6.810911 ACATCTGGAGTTGTGATATAGTGAC 58.189 40.000 0.00 0.00 0.00 3.67
2849 2929 5.406780 AGTGCTTATCTTCTGTCTTGTTTCG 59.593 40.000 0.00 0.00 0.00 3.46
2887 2967 5.106442 GGTTTGTCGAATTGAACCAAACTT 58.894 37.500 18.90 0.00 40.62 2.66
2896 2976 6.237808 CGAATTGAACCAAACTTGTTTTCTGG 60.238 38.462 0.00 0.00 0.00 3.86
2929 3009 3.858868 GAGTGGGCTTGACGCGTCA 62.859 63.158 36.40 36.40 40.44 4.35
2952 3032 9.593134 GTCATATTTCTACTCACTCTTTCATGT 57.407 33.333 0.00 0.00 0.00 3.21
3057 3139 4.997395 ACAACTTGCATCAGTCGATTTAGT 59.003 37.500 0.00 0.00 0.00 2.24
3066 3148 6.460399 GCATCAGTCGATTTAGTAAGAGGAGT 60.460 42.308 0.00 0.00 0.00 3.85
3067 3149 6.680874 TCAGTCGATTTAGTAAGAGGAGTC 57.319 41.667 0.00 0.00 0.00 3.36
3106 3188 1.001760 GGAGGAGACAGGGGTAGCA 59.998 63.158 0.00 0.00 0.00 3.49
3117 3199 3.053896 GGTAGCACGGCCAACCAC 61.054 66.667 2.24 0.00 35.83 4.16
3128 3210 2.732016 CAACCACGACGTCCCAGA 59.268 61.111 10.58 0.00 0.00 3.86
3131 3213 0.395312 AACCACGACGTCCCAGAAAT 59.605 50.000 10.58 0.00 0.00 2.17
3188 3271 4.111016 CTGGTCGCCGCGTCACTA 62.111 66.667 13.39 1.43 0.00 2.74
3191 3274 4.477975 GTCGCCGCGTCACTAGCT 62.478 66.667 13.39 0.00 0.00 3.32
3199 3282 0.822164 GCGTCACTAGCTAAGGGGAA 59.178 55.000 0.00 0.00 0.00 3.97
3202 3285 2.693591 CGTCACTAGCTAAGGGGAATCA 59.306 50.000 0.00 0.00 0.00 2.57
3267 3350 5.338381 GGTTGTGATTAGAGAGATGGTTGGA 60.338 44.000 0.00 0.00 0.00 3.53
3274 3357 1.144936 GAGATGGTTGGAGGAGGCG 59.855 63.158 0.00 0.00 0.00 5.52
3280 3363 3.319198 TTGGAGGAGGCGGTGGTC 61.319 66.667 0.00 0.00 0.00 4.02
3281 3364 4.631740 TGGAGGAGGCGGTGGTCA 62.632 66.667 0.00 0.00 0.00 4.02
3340 3423 6.463755 GGAGGAGGTAGGAGAAGATGAAAATC 60.464 46.154 0.00 0.00 0.00 2.17
3341 3424 6.209026 AGGAGGTAGGAGAAGATGAAAATCT 58.791 40.000 0.00 0.00 0.00 2.40
3342 3425 7.366226 AGGAGGTAGGAGAAGATGAAAATCTA 58.634 38.462 0.00 0.00 0.00 1.98
3343 3426 7.508977 AGGAGGTAGGAGAAGATGAAAATCTAG 59.491 40.741 0.00 0.00 0.00 2.43
3347 3430 6.173427 AGGAGAAGATGAAAATCTAGAGGC 57.827 41.667 0.00 0.00 0.00 4.70
3348 3431 5.664908 AGGAGAAGATGAAAATCTAGAGGCA 59.335 40.000 0.00 0.00 0.00 4.75
3350 3433 6.305272 AGAAGATGAAAATCTAGAGGCACA 57.695 37.500 0.00 0.00 0.00 4.57
3400 3483 5.000012 ACTGTCAAATAGAGCTCCTTACG 58.000 43.478 10.93 0.00 0.00 3.18
3401 3484 4.705507 ACTGTCAAATAGAGCTCCTTACGA 59.294 41.667 10.93 0.00 0.00 3.43
3402 3485 5.185249 ACTGTCAAATAGAGCTCCTTACGAA 59.815 40.000 10.93 0.00 0.00 3.85
3403 3486 5.408356 TGTCAAATAGAGCTCCTTACGAAC 58.592 41.667 10.93 2.01 0.00 3.95
3404 3487 5.047590 TGTCAAATAGAGCTCCTTACGAACA 60.048 40.000 10.93 4.74 0.00 3.18
3405 3488 5.867716 GTCAAATAGAGCTCCTTACGAACAA 59.132 40.000 10.93 0.00 0.00 2.83
3406 3489 6.367969 GTCAAATAGAGCTCCTTACGAACAAA 59.632 38.462 10.93 0.00 0.00 2.83
3407 3490 6.932400 TCAAATAGAGCTCCTTACGAACAAAA 59.068 34.615 10.93 0.00 0.00 2.44
3408 3491 6.723131 AATAGAGCTCCTTACGAACAAAAC 57.277 37.500 10.93 0.00 0.00 2.43
3409 3492 4.067972 AGAGCTCCTTACGAACAAAACA 57.932 40.909 10.93 0.00 0.00 2.83
3410 3493 4.642429 AGAGCTCCTTACGAACAAAACAT 58.358 39.130 10.93 0.00 0.00 2.71
3411 3494 5.790593 AGAGCTCCTTACGAACAAAACATA 58.209 37.500 10.93 0.00 0.00 2.29
3412 3495 5.638234 AGAGCTCCTTACGAACAAAACATAC 59.362 40.000 10.93 0.00 0.00 2.39
3413 3496 5.302360 AGCTCCTTACGAACAAAACATACA 58.698 37.500 0.00 0.00 0.00 2.29
3414 3497 5.938125 AGCTCCTTACGAACAAAACATACAT 59.062 36.000 0.00 0.00 0.00 2.29
3415 3498 6.430000 AGCTCCTTACGAACAAAACATACATT 59.570 34.615 0.00 0.00 0.00 2.71
3416 3499 7.604927 AGCTCCTTACGAACAAAACATACATTA 59.395 33.333 0.00 0.00 0.00 1.90
3417 3500 7.903431 GCTCCTTACGAACAAAACATACATTAG 59.097 37.037 0.00 0.00 0.00 1.73
3418 3501 8.259049 TCCTTACGAACAAAACATACATTAGG 57.741 34.615 0.00 0.00 0.00 2.69
3419 3502 8.095792 TCCTTACGAACAAAACATACATTAGGA 58.904 33.333 0.00 0.00 0.00 2.94
3420 3503 8.388103 CCTTACGAACAAAACATACATTAGGAG 58.612 37.037 0.00 0.00 0.00 3.69
3421 3504 9.146984 CTTACGAACAAAACATACATTAGGAGA 57.853 33.333 0.00 0.00 0.00 3.71
3422 3505 7.596749 ACGAACAAAACATACATTAGGAGAG 57.403 36.000 0.00 0.00 0.00 3.20
3423 3506 7.383687 ACGAACAAAACATACATTAGGAGAGA 58.616 34.615 0.00 0.00 0.00 3.10
3424 3507 7.876068 ACGAACAAAACATACATTAGGAGAGAA 59.124 33.333 0.00 0.00 0.00 2.87
3425 3508 8.383619 CGAACAAAACATACATTAGGAGAGAAG 58.616 37.037 0.00 0.00 0.00 2.85
3426 3509 9.220767 GAACAAAACATACATTAGGAGAGAAGT 57.779 33.333 0.00 0.00 0.00 3.01
3427 3510 8.779354 ACAAAACATACATTAGGAGAGAAGTC 57.221 34.615 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.639839 AGATCATTCCTATTCCACCCCG 59.360 50.000 0.00 0.00 0.00 5.73
84 85 6.042552 TCTCTCAAGATCATTCCTATTCCACC 59.957 42.308 0.00 0.00 0.00 4.61
85 86 7.060383 TCTCTCAAGATCATTCCTATTCCAC 57.940 40.000 0.00 0.00 0.00 4.02
122 141 4.122776 ACCTGCACGAGCTAAAGATAATG 58.877 43.478 6.36 0.00 42.74 1.90
192 211 1.599047 CAAGCATGAGTCCGTCCCT 59.401 57.895 0.00 0.00 0.00 4.20
197 216 1.089112 TCAATGCAAGCATGAGTCCG 58.911 50.000 8.50 0.00 36.68 4.79
216 235 0.110486 ATTGGTCGGTTGCTCCACTT 59.890 50.000 0.00 0.00 35.57 3.16
392 416 5.984926 TGTGATCTTTCAAAATTTGCCAGAC 59.015 36.000 0.00 1.78 32.48 3.51
527 552 8.430431 AGAAGAAAACTAGTTAACCTAGCAAGT 58.570 33.333 8.92 0.00 46.10 3.16
528 553 8.834749 AGAAGAAAACTAGTTAACCTAGCAAG 57.165 34.615 8.92 0.00 46.10 4.01
529 554 8.648693 AGAGAAGAAAACTAGTTAACCTAGCAA 58.351 33.333 8.92 0.00 46.10 3.91
530 555 8.191534 AGAGAAGAAAACTAGTTAACCTAGCA 57.808 34.615 8.92 0.00 46.10 3.49
531 556 8.525316 AGAGAGAAGAAAACTAGTTAACCTAGC 58.475 37.037 8.92 3.33 46.10 3.42
566 591 6.096423 CCTTAGTTGAATAAAAACTAGCCCCC 59.904 42.308 0.00 0.00 40.30 5.40
567 592 6.888088 TCCTTAGTTGAATAAAAACTAGCCCC 59.112 38.462 0.00 0.00 40.30 5.80
568 593 7.933215 TCCTTAGTTGAATAAAAACTAGCCC 57.067 36.000 0.00 0.00 40.30 5.19
569 594 9.788960 CAATCCTTAGTTGAATAAAAACTAGCC 57.211 33.333 0.00 0.00 40.30 3.93
580 605 6.552008 TCCTCAAACCAATCCTTAGTTGAAT 58.448 36.000 0.00 0.00 0.00 2.57
649 674 8.836413 TCGTTTTTCTTCTTCTGTATGAACAAT 58.164 29.630 0.00 0.00 34.49 2.71
661 691 6.546972 AGAATGGAGTCGTTTTTCTTCTTC 57.453 37.500 0.00 0.00 0.00 2.87
663 693 6.944234 AAAGAATGGAGTCGTTTTTCTTCT 57.056 33.333 8.00 0.00 36.03 2.85
667 697 6.128254 CCTCCTAAAGAATGGAGTCGTTTTTC 60.128 42.308 8.04 0.00 46.17 2.29
678 708 8.753497 ACTAAATTTAGCCTCCTAAAGAATGG 57.247 34.615 22.45 0.00 44.33 3.16
881 912 2.752238 ACGAGAGAGTGGCGGGAG 60.752 66.667 0.00 0.00 0.00 4.30
2229 2303 2.283173 TCTCCTGTCTCTGCGGCA 60.283 61.111 1.29 1.29 0.00 5.69
2241 2315 3.616721 ACGCCGCTGTTGTCTCCT 61.617 61.111 0.00 0.00 0.00 3.69
2437 2514 2.271716 TTCCGTTGGGGCGTACGTA 61.272 57.895 17.90 0.00 36.09 3.57
2487 2564 4.948847 ACAAAATCCAGAAACTCCTTTGC 58.051 39.130 0.00 0.00 0.00 3.68
2544 2621 1.003331 TGATGTTTTCGTGCCGTTCAC 60.003 47.619 0.00 0.00 42.23 3.18
2579 2656 8.579863 TCACTATATCACAACTCCAGATGTATG 58.420 37.037 0.00 0.00 29.63 2.39
2606 2683 2.866762 GCAGCAAACTTACCTAGATCCG 59.133 50.000 0.00 0.00 0.00 4.18
2849 2929 4.085415 CGACAAACCGTTCACAGTTAGTAC 60.085 45.833 0.00 0.00 0.00 2.73
2906 2986 1.166531 GCGTCAAGCCCACTCTTGTT 61.167 55.000 3.80 0.00 42.90 2.83
2908 2988 2.671177 CGCGTCAAGCCCACTCTTG 61.671 63.158 0.00 0.00 44.76 3.02
2910 2990 3.575351 GACGCGTCAAGCCCACTCT 62.575 63.158 33.09 0.00 44.76 3.24
2911 2991 3.112709 GACGCGTCAAGCCCACTC 61.113 66.667 33.09 2.59 44.76 3.51
2912 2992 1.884075 TATGACGCGTCAAGCCCACT 61.884 55.000 41.74 26.92 43.58 4.00
2914 2994 0.107897 AATATGACGCGTCAAGCCCA 60.108 50.000 41.74 24.99 43.58 5.36
2915 2995 1.003866 GAAATATGACGCGTCAAGCCC 60.004 52.381 41.74 25.78 43.58 5.19
2916 2996 1.933853 AGAAATATGACGCGTCAAGCC 59.066 47.619 41.74 27.44 43.58 4.35
2917 2997 3.797256 AGTAGAAATATGACGCGTCAAGC 59.203 43.478 41.74 27.48 43.58 4.01
2918 2998 5.034797 TGAGTAGAAATATGACGCGTCAAG 58.965 41.667 41.74 0.00 43.58 3.02
2919 2999 4.796830 GTGAGTAGAAATATGACGCGTCAA 59.203 41.667 41.74 30.01 43.58 3.18
2920 3000 4.095932 AGTGAGTAGAAATATGACGCGTCA 59.904 41.667 40.57 40.57 44.59 4.35
3032 3114 6.818644 ACTAAATCGACTGATGCAAGTTGTAT 59.181 34.615 6.11 6.11 34.24 2.29
3057 3139 2.362397 GCATCACCATCGACTCCTCTTA 59.638 50.000 0.00 0.00 0.00 2.10
3066 3148 2.891936 GCTGCGCATCACCATCGA 60.892 61.111 12.24 0.00 0.00 3.59
3067 3149 3.945434 GGCTGCGCATCACCATCG 61.945 66.667 12.24 0.00 0.00 3.84
3106 3188 4.955774 GACGTCGTGGTTGGCCGT 62.956 66.667 0.63 0.00 37.67 5.68
3112 3194 0.395312 ATTTCTGGGACGTCGTGGTT 59.605 50.000 9.92 0.00 0.00 3.67
3117 3199 2.452813 CGGCATTTCTGGGACGTCG 61.453 63.158 9.92 0.00 0.00 5.12
3128 3210 3.717294 ACTCCCGGCTCGGCATTT 61.717 61.111 7.99 0.00 46.86 2.32
3148 3230 4.790962 TCGGTCCTCGACTCCGGG 62.791 72.222 0.00 0.00 43.74 5.73
3156 3238 2.507992 CAGCTGCTTCGGTCCTCG 60.508 66.667 0.00 0.00 40.90 4.63
3176 3259 1.939785 CTTAGCTAGTGACGCGGCG 60.940 63.158 22.36 22.36 0.00 6.46
3178 3261 1.065928 CCCTTAGCTAGTGACGCGG 59.934 63.158 12.47 0.00 0.00 6.46
3180 3263 0.822164 TTCCCCTTAGCTAGTGACGC 59.178 55.000 0.00 0.00 0.00 5.19
3182 3265 3.961408 TCTGATTCCCCTTAGCTAGTGAC 59.039 47.826 0.00 0.00 0.00 3.67
3184 3267 3.323403 CCTCTGATTCCCCTTAGCTAGTG 59.677 52.174 0.00 0.00 0.00 2.74
3185 3268 3.051727 ACCTCTGATTCCCCTTAGCTAGT 60.052 47.826 0.00 0.00 0.00 2.57
3186 3269 3.582164 ACCTCTGATTCCCCTTAGCTAG 58.418 50.000 0.00 0.00 0.00 3.42
3187 3270 3.708236 ACCTCTGATTCCCCTTAGCTA 57.292 47.619 0.00 0.00 0.00 3.32
3188 3271 2.507471 CAACCTCTGATTCCCCTTAGCT 59.493 50.000 0.00 0.00 0.00 3.32
3191 3274 2.500098 CGTCAACCTCTGATTCCCCTTA 59.500 50.000 0.00 0.00 36.14 2.69
3199 3282 1.513158 CGCTCCGTCAACCTCTGAT 59.487 57.895 0.00 0.00 36.14 2.90
3202 3285 1.258445 ATTCCGCTCCGTCAACCTCT 61.258 55.000 0.00 0.00 0.00 3.69
3226 3309 1.076632 CCTCCTCTCTAGCGTGGGT 60.077 63.158 1.19 0.00 0.00 4.51
3274 3357 2.167398 TAGCCGAACTGCTGACCACC 62.167 60.000 0.00 0.00 42.77 4.61
3280 3363 0.647410 CGACATTAGCCGAACTGCTG 59.353 55.000 1.27 0.00 42.77 4.41
3281 3364 0.246635 ACGACATTAGCCGAACTGCT 59.753 50.000 0.00 0.00 45.38 4.24
3340 3423 9.346725 GATGAAAAACTAAAATTGTGCCTCTAG 57.653 33.333 0.00 0.00 0.00 2.43
3341 3424 8.020819 CGATGAAAAACTAAAATTGTGCCTCTA 58.979 33.333 0.00 0.00 0.00 2.43
3342 3425 6.863126 CGATGAAAAACTAAAATTGTGCCTCT 59.137 34.615 0.00 0.00 0.00 3.69
3343 3426 6.089417 CCGATGAAAAACTAAAATTGTGCCTC 59.911 38.462 0.00 0.00 0.00 4.70
3347 3430 6.761731 TGCCGATGAAAAACTAAAATTGTG 57.238 33.333 0.00 0.00 0.00 3.33
3348 3431 7.961325 ATTGCCGATGAAAAACTAAAATTGT 57.039 28.000 0.00 0.00 0.00 2.71
3350 3433 8.376889 ACAATTGCCGATGAAAAACTAAAATT 57.623 26.923 5.05 0.00 0.00 1.82
3400 3483 9.220767 ACTTCTCTCCTAATGTATGTTTTGTTC 57.779 33.333 0.00 0.00 0.00 3.18
3401 3484 9.220767 GACTTCTCTCCTAATGTATGTTTTGTT 57.779 33.333 0.00 0.00 0.00 2.83
3402 3485 8.779354 GACTTCTCTCCTAATGTATGTTTTGT 57.221 34.615 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.