Multiple sequence alignment - TraesCS5D01G388800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G388800 | chr5D | 100.000 | 5567 | 0 | 0 | 1 | 5567 | 458184350 | 458178784 | 0.000000e+00 | 10281.0 |
1 | TraesCS5D01G388800 | chr5D | 83.883 | 1061 | 114 | 38 | 1423 | 2452 | 458097591 | 458096557 | 0.000000e+00 | 959.0 |
2 | TraesCS5D01G388800 | chr5D | 88.348 | 781 | 91 | 0 | 3520 | 4300 | 458095567 | 458094787 | 0.000000e+00 | 939.0 |
3 | TraesCS5D01G388800 | chr5D | 82.935 | 879 | 131 | 13 | 2582 | 3450 | 458096554 | 458095685 | 0.000000e+00 | 774.0 |
4 | TraesCS5D01G388800 | chr5D | 75.791 | 632 | 107 | 36 | 1815 | 2404 | 537224590 | 537223963 | 1.530000e-70 | 278.0 |
5 | TraesCS5D01G388800 | chr5D | 84.071 | 226 | 28 | 5 | 1501 | 1722 | 537224914 | 537224693 | 1.570000e-50 | 211.0 |
6 | TraesCS5D01G388800 | chr5D | 87.755 | 147 | 18 | 0 | 1178 | 1324 | 458098041 | 458097895 | 7.410000e-39 | 172.0 |
7 | TraesCS5D01G388800 | chr5D | 100.000 | 58 | 0 | 0 | 5266 | 5323 | 458179027 | 458178970 | 2.120000e-19 | 108.0 |
8 | TraesCS5D01G388800 | chr5D | 100.000 | 58 | 0 | 0 | 5324 | 5381 | 458179085 | 458179028 | 2.120000e-19 | 108.0 |
9 | TraesCS5D01G388800 | chr5B | 93.379 | 2492 | 109 | 30 | 2561 | 5017 | 561063549 | 561061079 | 0.000000e+00 | 3637.0 |
10 | TraesCS5D01G388800 | chr5B | 94.632 | 1863 | 49 | 19 | 613 | 2457 | 561065434 | 561063605 | 0.000000e+00 | 2839.0 |
11 | TraesCS5D01G388800 | chr5B | 88.246 | 1693 | 178 | 17 | 2761 | 4435 | 560730781 | 560729092 | 0.000000e+00 | 2004.0 |
12 | TraesCS5D01G388800 | chr5B | 84.428 | 1066 | 106 | 47 | 1423 | 2451 | 560444248 | 560443206 | 0.000000e+00 | 994.0 |
13 | TraesCS5D01G388800 | chr5B | 88.633 | 783 | 87 | 2 | 3520 | 4301 | 560442217 | 560441436 | 0.000000e+00 | 952.0 |
14 | TraesCS5D01G388800 | chr5B | 91.499 | 647 | 37 | 15 | 1816 | 2452 | 560731742 | 560731104 | 0.000000e+00 | 874.0 |
15 | TraesCS5D01G388800 | chr5B | 88.000 | 525 | 45 | 5 | 1 | 515 | 561065976 | 561065460 | 6.170000e-169 | 604.0 |
16 | TraesCS5D01G388800 | chr5B | 91.030 | 301 | 27 | 0 | 1422 | 1722 | 560732206 | 560731906 | 1.870000e-109 | 407.0 |
17 | TraesCS5D01G388800 | chr5B | 81.507 | 292 | 43 | 7 | 1435 | 1722 | 677821660 | 677821376 | 4.340000e-56 | 230.0 |
18 | TraesCS5D01G388800 | chr5B | 88.043 | 184 | 16 | 3 | 1141 | 1324 | 560732449 | 560732272 | 4.370000e-51 | 213.0 |
19 | TraesCS5D01G388800 | chr5B | 87.755 | 147 | 18 | 0 | 1178 | 1324 | 560444634 | 560444488 | 7.410000e-39 | 172.0 |
20 | TraesCS5D01G388800 | chr5A | 91.692 | 2323 | 137 | 36 | 2491 | 4796 | 576086671 | 576084388 | 0.000000e+00 | 3169.0 |
21 | TraesCS5D01G388800 | chr5A | 91.754 | 2195 | 126 | 35 | 2491 | 4668 | 576270760 | 576272916 | 0.000000e+00 | 3000.0 |
22 | TraesCS5D01G388800 | chr5A | 89.603 | 1712 | 152 | 17 | 2746 | 4438 | 575902597 | 575900893 | 0.000000e+00 | 2152.0 |
23 | TraesCS5D01G388800 | chr5A | 90.490 | 1672 | 100 | 22 | 837 | 2484 | 576088423 | 576086787 | 0.000000e+00 | 2152.0 |
24 | TraesCS5D01G388800 | chr5A | 83.936 | 1743 | 243 | 29 | 2583 | 4300 | 575707766 | 575706036 | 0.000000e+00 | 1633.0 |
25 | TraesCS5D01G388800 | chr5A | 84.434 | 1060 | 116 | 39 | 1423 | 2452 | 575708810 | 575707770 | 0.000000e+00 | 998.0 |
26 | TraesCS5D01G388800 | chr5A | 90.658 | 653 | 47 | 8 | 1816 | 2456 | 575903535 | 575902885 | 0.000000e+00 | 856.0 |
27 | TraesCS5D01G388800 | chr5A | 90.654 | 642 | 32 | 8 | 980 | 1612 | 576268958 | 576269580 | 0.000000e+00 | 828.0 |
28 | TraesCS5D01G388800 | chr5A | 91.466 | 539 | 34 | 5 | 4793 | 5323 | 576073221 | 576072687 | 0.000000e+00 | 730.0 |
29 | TraesCS5D01G388800 | chr5A | 96.143 | 363 | 14 | 0 | 2122 | 2484 | 576270282 | 576270644 | 1.340000e-165 | 593.0 |
30 | TraesCS5D01G388800 | chr5A | 78.049 | 697 | 78 | 34 | 309 | 969 | 576089478 | 576088821 | 2.450000e-98 | 370.0 |
31 | TraesCS5D01G388800 | chr5A | 81.978 | 455 | 61 | 9 | 4203 | 4653 | 575900543 | 575900106 | 3.170000e-97 | 366.0 |
32 | TraesCS5D01G388800 | chr5A | 89.388 | 245 | 23 | 3 | 1478 | 1722 | 575903854 | 575903613 | 7.010000e-79 | 305.0 |
33 | TraesCS5D01G388800 | chr5A | 80.435 | 368 | 37 | 24 | 1141 | 1507 | 575904275 | 575903942 | 1.200000e-61 | 248.0 |
34 | TraesCS5D01G388800 | chr4A | 85.038 | 782 | 117 | 0 | 3520 | 4301 | 632944753 | 632943972 | 0.000000e+00 | 797.0 |
35 | TraesCS5D01G388800 | chr4B | 86.636 | 217 | 29 | 0 | 1814 | 2030 | 27249687 | 27249903 | 2.000000e-59 | 241.0 |
36 | TraesCS5D01G388800 | chr7B | 86.076 | 79 | 9 | 1 | 170 | 248 | 477374835 | 477374759 | 3.570000e-12 | 84.2 |
37 | TraesCS5D01G388800 | chr7B | 83.544 | 79 | 11 | 1 | 170 | 248 | 477380691 | 477380615 | 7.740000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G388800 | chr5D | 458178784 | 458184350 | 5566 | True | 10281.000000 | 10281 | 100.000000 | 1 | 5567 | 1 | chr5D.!!$R1 | 5566 |
1 | TraesCS5D01G388800 | chr5D | 458094787 | 458098041 | 3254 | True | 711.000000 | 959 | 85.730250 | 1178 | 4300 | 4 | chr5D.!!$R2 | 3122 |
2 | TraesCS5D01G388800 | chr5D | 537223963 | 537224914 | 951 | True | 244.500000 | 278 | 79.931000 | 1501 | 2404 | 2 | chr5D.!!$R4 | 903 |
3 | TraesCS5D01G388800 | chr5B | 561061079 | 561065976 | 4897 | True | 2360.000000 | 3637 | 92.003667 | 1 | 5017 | 3 | chr5B.!!$R4 | 5016 |
4 | TraesCS5D01G388800 | chr5B | 560729092 | 560732449 | 3357 | True | 874.500000 | 2004 | 89.704500 | 1141 | 4435 | 4 | chr5B.!!$R3 | 3294 |
5 | TraesCS5D01G388800 | chr5B | 560441436 | 560444634 | 3198 | True | 706.000000 | 994 | 86.938667 | 1178 | 4301 | 3 | chr5B.!!$R2 | 3123 |
6 | TraesCS5D01G388800 | chr5A | 576084388 | 576089478 | 5090 | True | 1897.000000 | 3169 | 86.743667 | 309 | 4796 | 3 | chr5A.!!$R4 | 4487 |
7 | TraesCS5D01G388800 | chr5A | 576268958 | 576272916 | 3958 | False | 1473.666667 | 3000 | 92.850333 | 980 | 4668 | 3 | chr5A.!!$F1 | 3688 |
8 | TraesCS5D01G388800 | chr5A | 575706036 | 575708810 | 2774 | True | 1315.500000 | 1633 | 84.185000 | 1423 | 4300 | 2 | chr5A.!!$R2 | 2877 |
9 | TraesCS5D01G388800 | chr5A | 575900106 | 575904275 | 4169 | True | 785.400000 | 2152 | 86.412400 | 1141 | 4653 | 5 | chr5A.!!$R3 | 3512 |
10 | TraesCS5D01G388800 | chr5A | 576072687 | 576073221 | 534 | True | 730.000000 | 730 | 91.466000 | 4793 | 5323 | 1 | chr5A.!!$R1 | 530 |
11 | TraesCS5D01G388800 | chr4A | 632943972 | 632944753 | 781 | True | 797.000000 | 797 | 85.038000 | 3520 | 4301 | 1 | chr4A.!!$R1 | 781 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
684 | 710 | 0.107508 | ATGCAGAGGTCATTCCACCG | 60.108 | 55.000 | 0.00 | 0.00 | 41.90 | 4.94 | F |
690 | 716 | 0.245539 | AGGTCATTCCACCGTGTACG | 59.754 | 55.000 | 0.00 | 0.00 | 41.90 | 3.67 | F |
1379 | 1947 | 1.079875 | CTTCCCGTGCAATGCAATGC | 61.080 | 55.000 | 19.99 | 19.99 | 46.58 | 3.56 | F |
2448 | 3553 | 0.542702 | CCCCCAAGCCACAAGTCATT | 60.543 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 | F |
2713 | 4008 | 3.568007 | TCCATCGGCCAAATTATTAGTGC | 59.432 | 43.478 | 2.24 | 0.00 | 0.00 | 4.40 | F |
4357 | 5711 | 0.185901 | ATGTTGGGGTGTGTGCTTCT | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1742 | 2649 | 2.286294 | GCATCCACTGAACACATCGATC | 59.714 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 | R |
2076 | 3123 | 2.288825 | CGTAAGTTCCAAGGAGAGTGCA | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 | R |
2815 | 4114 | 1.003355 | CTCGGTGATGGTGCTGGTT | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 | R |
3510 | 4810 | 1.868713 | TGCCCCTGCATTTCATTGAT | 58.131 | 45.000 | 0.00 | 0.00 | 44.23 | 2.57 | R |
4438 | 6380 | 2.423538 | GGAACATACATTGACCAGTGGC | 59.576 | 50.000 | 9.78 | 2.56 | 0.00 | 5.01 | R |
5209 | 7164 | 0.464036 | TGGACTCTCAACTGCGTGTT | 59.536 | 50.000 | 0.00 | 0.00 | 39.92 | 3.32 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
64 | 65 | 6.690194 | ATCATGTTCAGCTTGATAACTTCC | 57.310 | 37.500 | 0.00 | 0.00 | 39.34 | 3.46 |
76 | 77 | 4.075682 | TGATAACTTCCGCCAAACATCAA | 58.924 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
136 | 137 | 1.152881 | ATCAAGCCTTCCGCCATCC | 60.153 | 57.895 | 0.00 | 0.00 | 38.78 | 3.51 |
152 | 162 | 2.227089 | ATCCTGCACGGACGAACTCC | 62.227 | 60.000 | 7.00 | 0.00 | 46.80 | 3.85 |
159 | 169 | 0.179067 | ACGGACGAACTCCTGCAAAA | 60.179 | 50.000 | 0.00 | 0.00 | 36.80 | 2.44 |
168 | 178 | 0.178992 | CTCCTGCAAAACCCCTGACA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
176 | 186 | 3.181466 | GCAAAACCCCTGACATTTGTCTT | 60.181 | 43.478 | 11.67 | 0.00 | 44.99 | 3.01 |
181 | 191 | 2.558359 | CCCCTGACATTTGTCTTTGGTC | 59.442 | 50.000 | 11.67 | 0.00 | 44.99 | 4.02 |
184 | 194 | 3.304928 | CCTGACATTTGTCTTTGGTCTGC | 60.305 | 47.826 | 11.67 | 0.00 | 44.99 | 4.26 |
185 | 195 | 2.290367 | TGACATTTGTCTTTGGTCTGCG | 59.710 | 45.455 | 11.67 | 0.00 | 44.99 | 5.18 |
186 | 196 | 1.608590 | ACATTTGTCTTTGGTCTGCGG | 59.391 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
187 | 197 | 1.068333 | CATTTGTCTTTGGTCTGCGGG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
215 | 225 | 2.125912 | CTTCTGGACCACTCGGCG | 60.126 | 66.667 | 0.00 | 0.00 | 34.57 | 6.46 |
219 | 229 | 3.432051 | CTGGACCACTCGGCGGATC | 62.432 | 68.421 | 7.21 | 0.00 | 34.57 | 3.36 |
224 | 234 | 1.081376 | CCACTCGGCGGATCGATAC | 60.081 | 63.158 | 7.21 | 0.00 | 38.55 | 2.24 |
225 | 235 | 1.652563 | CACTCGGCGGATCGATACA | 59.347 | 57.895 | 8.69 | 0.00 | 38.55 | 2.29 |
227 | 237 | 1.442857 | CTCGGCGGATCGATACAGC | 60.443 | 63.158 | 8.69 | 11.74 | 38.55 | 4.40 |
232 | 242 | 2.561956 | CGGATCGATACAGCCCCGT | 61.562 | 63.158 | 8.69 | 0.00 | 33.02 | 5.28 |
237 | 247 | 1.216977 | CGATACAGCCCCGTGTTGA | 59.783 | 57.895 | 0.00 | 0.00 | 31.46 | 3.18 |
240 | 250 | 1.670811 | GATACAGCCCCGTGTTGAATG | 59.329 | 52.381 | 0.00 | 0.00 | 31.46 | 2.67 |
254 | 264 | 1.213491 | TGAATGACACAACACGTCCG | 58.787 | 50.000 | 0.00 | 0.00 | 32.15 | 4.79 |
266 | 276 | 2.434359 | CGTCCGAAAGCAGGGTCC | 60.434 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
268 | 278 | 1.072505 | GTCCGAAAGCAGGGTCCAA | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
273 | 283 | 1.874739 | CGAAAGCAGGGTCCAAACGTA | 60.875 | 52.381 | 0.00 | 0.00 | 0.00 | 3.57 |
287 | 297 | 0.319727 | AACGTATGCGGACGGTTTGA | 60.320 | 50.000 | 8.39 | 0.00 | 40.66 | 2.69 |
289 | 299 | 0.457166 | CGTATGCGGACGGTTTGAGA | 60.457 | 55.000 | 0.00 | 0.00 | 39.19 | 3.27 |
293 | 303 | 1.006571 | GCGGACGGTTTGAGAGTCA | 60.007 | 57.895 | 0.00 | 0.00 | 36.68 | 3.41 |
294 | 304 | 0.599204 | GCGGACGGTTTGAGAGTCAA | 60.599 | 55.000 | 0.00 | 0.00 | 36.68 | 3.18 |
296 | 306 | 1.537348 | CGGACGGTTTGAGAGTCAACA | 60.537 | 52.381 | 0.00 | 0.00 | 35.89 | 3.33 |
306 | 316 | 6.205464 | GGTTTGAGAGTCAACATTGAAGATGA | 59.795 | 38.462 | 0.00 | 0.00 | 39.21 | 2.92 |
337 | 347 | 5.859205 | ATTTTACTCATCCAAATCCTGCC | 57.141 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
447 | 458 | 2.103143 | CGAGGCGCACGAATCTCT | 59.897 | 61.111 | 18.59 | 0.00 | 0.00 | 3.10 |
448 | 459 | 1.941734 | CGAGGCGCACGAATCTCTC | 60.942 | 63.158 | 18.59 | 8.00 | 0.00 | 3.20 |
487 | 504 | 1.740380 | CGTCTATGCTGGTCCCAAGTG | 60.740 | 57.143 | 0.00 | 0.00 | 0.00 | 3.16 |
498 | 515 | 4.680237 | CCAAGTGGCGCGGACAGA | 62.680 | 66.667 | 8.83 | 0.00 | 0.00 | 3.41 |
499 | 516 | 3.114616 | CAAGTGGCGCGGACAGAG | 61.115 | 66.667 | 8.83 | 0.00 | 0.00 | 3.35 |
578 | 595 | 3.515286 | GGTCGACGCCGGAGATCA | 61.515 | 66.667 | 13.83 | 0.00 | 36.24 | 2.92 |
598 | 616 | 3.179265 | CGCGCAGTCGACCGATTT | 61.179 | 61.111 | 16.80 | 0.00 | 38.10 | 2.17 |
602 | 620 | 0.298707 | CGCAGTCGACCGATTTGATG | 59.701 | 55.000 | 13.01 | 2.12 | 38.10 | 3.07 |
605 | 623 | 1.012234 | GTCGACCGATTTGATGCGC | 60.012 | 57.895 | 3.51 | 0.00 | 0.00 | 6.09 |
610 | 628 | 1.867233 | GACCGATTTGATGCGCATACT | 59.133 | 47.619 | 25.40 | 0.84 | 0.00 | 2.12 |
635 | 653 | 1.656095 | CCAAGCTTGAACTCGATCGAC | 59.344 | 52.381 | 28.05 | 5.41 | 0.00 | 4.20 |
641 | 659 | 3.686128 | CTTGAACTCGATCGACCTACTG | 58.314 | 50.000 | 15.15 | 5.95 | 0.00 | 2.74 |
683 | 709 | 1.747355 | CAATGCAGAGGTCATTCCACC | 59.253 | 52.381 | 0.00 | 0.00 | 39.02 | 4.61 |
684 | 710 | 0.107508 | ATGCAGAGGTCATTCCACCG | 60.108 | 55.000 | 0.00 | 0.00 | 41.90 | 4.94 |
685 | 711 | 1.296715 | GCAGAGGTCATTCCACCGT | 59.703 | 57.895 | 0.00 | 0.00 | 41.90 | 4.83 |
687 | 713 | 0.321671 | CAGAGGTCATTCCACCGTGT | 59.678 | 55.000 | 0.00 | 0.00 | 41.90 | 4.49 |
688 | 714 | 1.548719 | CAGAGGTCATTCCACCGTGTA | 59.451 | 52.381 | 0.00 | 0.00 | 41.90 | 2.90 |
689 | 715 | 1.549170 | AGAGGTCATTCCACCGTGTAC | 59.451 | 52.381 | 0.00 | 0.00 | 41.90 | 2.90 |
690 | 716 | 0.245539 | AGGTCATTCCACCGTGTACG | 59.754 | 55.000 | 0.00 | 0.00 | 41.90 | 3.67 |
799 | 830 | 5.233902 | CACGATTGAGATCTTGTCTTGATCC | 59.766 | 44.000 | 0.00 | 0.00 | 40.69 | 3.36 |
857 | 900 | 6.239232 | CGTAGCTACTCCCCTGTATACAATTT | 60.239 | 42.308 | 21.20 | 0.00 | 0.00 | 1.82 |
858 | 901 | 5.930135 | AGCTACTCCCCTGTATACAATTTG | 58.070 | 41.667 | 7.06 | 0.00 | 0.00 | 2.32 |
859 | 902 | 5.428783 | AGCTACTCCCCTGTATACAATTTGT | 59.571 | 40.000 | 7.06 | 7.30 | 0.00 | 2.83 |
860 | 903 | 6.614087 | AGCTACTCCCCTGTATACAATTTGTA | 59.386 | 38.462 | 11.47 | 11.47 | 37.24 | 2.41 |
861 | 904 | 6.929606 | GCTACTCCCCTGTATACAATTTGTAG | 59.070 | 42.308 | 14.18 | 14.63 | 36.14 | 2.74 |
978 | 1536 | 3.883744 | AACGCCAAGCTCACCGAGG | 62.884 | 63.158 | 6.82 | 0.00 | 0.00 | 4.63 |
1065 | 1624 | 1.697432 | AGCAAGCCACACTACCACTAA | 59.303 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
1097 | 1656 | 3.321111 | ACTGTTTCTCCGTCTTAGAAGCA | 59.679 | 43.478 | 0.00 | 0.00 | 40.48 | 3.91 |
1101 | 1660 | 5.047590 | TGTTTCTCCGTCTTAGAAGCATACA | 60.048 | 40.000 | 0.00 | 0.00 | 38.68 | 2.29 |
1103 | 1662 | 6.954487 | TTCTCCGTCTTAGAAGCATACATA | 57.046 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1104 | 1663 | 6.315091 | TCTCCGTCTTAGAAGCATACATAC | 57.685 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
1105 | 1664 | 5.826208 | TCTCCGTCTTAGAAGCATACATACA | 59.174 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1106 | 1665 | 5.828747 | TCCGTCTTAGAAGCATACATACAC | 58.171 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1107 | 1666 | 5.358725 | TCCGTCTTAGAAGCATACATACACA | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1174 | 1742 | 2.525629 | TCACCGGGAGCAAGACCA | 60.526 | 61.111 | 6.32 | 0.00 | 0.00 | 4.02 |
1334 | 1902 | 1.741770 | GTGAGCACCATCGACCACC | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
1379 | 1947 | 1.079875 | CTTCCCGTGCAATGCAATGC | 61.080 | 55.000 | 19.99 | 19.99 | 46.58 | 3.56 |
1742 | 2649 | 1.945394 | CGAGCTCTTCAATCCCCAATG | 59.055 | 52.381 | 12.85 | 0.00 | 0.00 | 2.82 |
1788 | 2791 | 5.278604 | ACGTTTTTGCTTGTCCACTTATTC | 58.721 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
1807 | 2839 | 9.918630 | ACTTATTCAAGTAAACGTGTATGTACT | 57.081 | 29.630 | 0.00 | 0.00 | 43.33 | 2.73 |
2076 | 3123 | 5.260424 | TCTCTCTTTCTCACTCACTAGCAT | 58.740 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
2448 | 3553 | 0.542702 | CCCCCAAGCCACAAGTCATT | 60.543 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2546 | 3761 | 6.209391 | AGGATCATCAAACGTTGGAAGAAAAT | 59.791 | 34.615 | 14.12 | 0.00 | 0.00 | 1.82 |
2708 | 4003 | 8.821686 | TTCATATATCCATCGGCCAAATTATT | 57.178 | 30.769 | 2.24 | 0.00 | 0.00 | 1.40 |
2711 | 4006 | 9.342308 | CATATATCCATCGGCCAAATTATTAGT | 57.658 | 33.333 | 2.24 | 0.00 | 0.00 | 2.24 |
2712 | 4007 | 5.964958 | ATCCATCGGCCAAATTATTAGTG | 57.035 | 39.130 | 2.24 | 0.00 | 0.00 | 2.74 |
2713 | 4008 | 3.568007 | TCCATCGGCCAAATTATTAGTGC | 59.432 | 43.478 | 2.24 | 0.00 | 0.00 | 4.40 |
4349 | 5703 | 1.542987 | GCATGCAAAATGTTGGGGTGT | 60.543 | 47.619 | 14.21 | 0.00 | 35.10 | 4.16 |
4357 | 5711 | 0.185901 | ATGTTGGGGTGTGTGCTTCT | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4365 | 5719 | 2.171448 | GGGTGTGTGCTTCTAGGATCAT | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
4389 | 6331 | 7.534085 | TTTGCTTGAATAATCTAGTACACCG | 57.466 | 36.000 | 0.00 | 0.00 | 31.94 | 4.94 |
4438 | 6380 | 1.296715 | GTGGGTAGCCACTGGTCAG | 59.703 | 63.158 | 32.12 | 0.00 | 37.68 | 3.51 |
4439 | 6381 | 2.269241 | GGGTAGCCACTGGTCAGC | 59.731 | 66.667 | 5.96 | 0.00 | 0.00 | 4.26 |
4440 | 6382 | 2.269241 | GGTAGCCACTGGTCAGCC | 59.731 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4441 | 6383 | 2.592993 | GGTAGCCACTGGTCAGCCA | 61.593 | 63.158 | 0.00 | 0.00 | 43.73 | 4.75 |
4442 | 6384 | 1.376037 | GTAGCCACTGGTCAGCCAC | 60.376 | 63.158 | 0.00 | 0.00 | 40.46 | 5.01 |
4445 | 6387 | 2.033141 | CCACTGGTCAGCCACTGG | 59.967 | 66.667 | 0.00 | 0.00 | 40.61 | 4.00 |
4446 | 6388 | 2.822637 | CCACTGGTCAGCCACTGGT | 61.823 | 63.158 | 0.00 | 0.00 | 41.20 | 4.00 |
4447 | 6389 | 1.302033 | CACTGGTCAGCCACTGGTC | 60.302 | 63.158 | 0.00 | 0.00 | 40.46 | 4.02 |
4448 | 6390 | 1.766059 | ACTGGTCAGCCACTGGTCA | 60.766 | 57.895 | 0.00 | 0.00 | 40.46 | 4.02 |
4449 | 6391 | 1.344953 | ACTGGTCAGCCACTGGTCAA | 61.345 | 55.000 | 0.00 | 0.00 | 40.46 | 3.18 |
4450 | 6392 | 0.037303 | CTGGTCAGCCACTGGTCAAT | 59.963 | 55.000 | 0.00 | 0.00 | 40.46 | 2.57 |
4451 | 6393 | 0.250858 | TGGTCAGCCACTGGTCAATG | 60.251 | 55.000 | 0.00 | 0.00 | 40.46 | 2.82 |
4452 | 6394 | 0.250901 | GGTCAGCCACTGGTCAATGT | 60.251 | 55.000 | 0.00 | 0.00 | 34.09 | 2.71 |
4455 | 6397 | 2.679837 | GTCAGCCACTGGTCAATGTATG | 59.320 | 50.000 | 0.00 | 0.00 | 31.51 | 2.39 |
4617 | 6563 | 0.388520 | GGCATTGAAGGTGGTTTCGC | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4657 | 6603 | 2.049433 | CCGTCCGCCTATAAGCCG | 60.049 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
4687 | 6633 | 2.672961 | TGTGCCTAGAATTGGAGACG | 57.327 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4725 | 6671 | 6.710692 | TGCAATGATATATCACTGTAAGCG | 57.289 | 37.500 | 21.63 | 0.31 | 40.03 | 4.68 |
4927 | 6873 | 5.918426 | TCATAATGCACACATCCACATTT | 57.082 | 34.783 | 0.00 | 0.00 | 34.62 | 2.32 |
5018 | 6966 | 5.462034 | TGCAACAAACAAAATGCTACAAC | 57.538 | 34.783 | 0.00 | 0.00 | 39.49 | 3.32 |
5019 | 6967 | 4.331168 | TGCAACAAACAAAATGCTACAACC | 59.669 | 37.500 | 0.00 | 0.00 | 39.49 | 3.77 |
5021 | 6969 | 5.276820 | GCAACAAACAAAATGCTACAACCTC | 60.277 | 40.000 | 0.00 | 0.00 | 35.93 | 3.85 |
5033 | 6981 | 5.237815 | TGCTACAACCTCAAATGTGTCTAG | 58.762 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
5087 | 7035 | 2.205022 | ATGTGTGATCACCAACTGGG | 57.795 | 50.000 | 22.85 | 0.00 | 43.26 | 4.45 |
5089 | 7037 | 1.072173 | TGTGTGATCACCAACTGGGAG | 59.928 | 52.381 | 22.85 | 0.00 | 43.26 | 4.30 |
5098 | 7046 | 4.168101 | TCACCAACTGGGAGAATAGTCTT | 58.832 | 43.478 | 0.00 | 0.00 | 41.15 | 3.01 |
5105 | 7053 | 3.024547 | TGGGAGAATAGTCTTGAGTCCG | 58.975 | 50.000 | 0.00 | 0.00 | 32.80 | 4.79 |
5111 | 7059 | 4.767928 | AGAATAGTCTTGAGTCCGTCAACT | 59.232 | 41.667 | 0.00 | 0.00 | 40.45 | 3.16 |
5112 | 7060 | 4.705337 | ATAGTCTTGAGTCCGTCAACTC | 57.295 | 45.455 | 3.59 | 3.59 | 44.87 | 3.01 |
5137 | 7085 | 5.471556 | TGAAAATGACCATTGCATTGTCT | 57.528 | 34.783 | 7.75 | 0.00 | 39.58 | 3.41 |
5148 | 7096 | 2.300433 | TGCATTGTCTGTTGAGCAGTT | 58.700 | 42.857 | 0.00 | 0.00 | 45.23 | 3.16 |
5156 | 7104 | 3.991121 | GTCTGTTGAGCAGTTAAGAGTCC | 59.009 | 47.826 | 0.00 | 0.00 | 45.23 | 3.85 |
5170 | 7118 | 1.717077 | AGAGTCCAGGTAAGACCCTCA | 59.283 | 52.381 | 0.00 | 0.00 | 39.75 | 3.86 |
5177 | 7125 | 3.055747 | CCAGGTAAGACCCTCAACTTCTC | 60.056 | 52.174 | 0.00 | 0.00 | 39.75 | 2.87 |
5182 | 7130 | 2.104170 | AGACCCTCAACTTCTCGGATC | 58.896 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
5185 | 7133 | 0.173481 | CCTCAACTTCTCGGATCGCA | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 5.10 |
5186 | 7134 | 1.202463 | CCTCAACTTCTCGGATCGCAT | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
5206 | 7161 | 4.623167 | GCATGCGACGACTTTATCATATCT | 59.377 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
5209 | 7164 | 6.308371 | TGCGACGACTTTATCATATCTGTA | 57.692 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
5230 | 7185 | 0.668706 | CACGCAGTTGAGAGTCCAGG | 60.669 | 60.000 | 0.00 | 0.00 | 41.61 | 4.45 |
5236 | 7191 | 2.162608 | CAGTTGAGAGTCCAGGTAGTCG | 59.837 | 54.545 | 0.00 | 0.00 | 0.00 | 4.18 |
5254 | 7209 | 4.869451 | AGTCGTCCTCCTCCTTTTATAGT | 58.131 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
5261 | 7216 | 1.217882 | CTCCTTTTATAGTGGCGCCG | 58.782 | 55.000 | 23.90 | 3.23 | 0.00 | 6.46 |
5263 | 7218 | 0.179067 | CCTTTTATAGTGGCGCCGGA | 60.179 | 55.000 | 23.90 | 9.88 | 0.00 | 5.14 |
5290 | 7245 | 9.076781 | CCTCCCCAAATTAACAATTTCAAAAAT | 57.923 | 29.630 | 0.00 | 0.00 | 38.97 | 1.82 |
5317 | 7272 | 5.331980 | CCGCAAATTTGTAAGAAAACGTTCC | 60.332 | 40.000 | 19.03 | 0.00 | 33.92 | 3.62 |
5323 | 7278 | 8.797266 | AATTTGTAAGAAAACGTTCCTGATTC | 57.203 | 30.769 | 0.00 | 0.90 | 33.92 | 2.52 |
5324 | 7279 | 7.562454 | TTTGTAAGAAAACGTTCCTGATTCT | 57.438 | 32.000 | 0.00 | 3.60 | 33.92 | 2.40 |
5325 | 7280 | 6.780706 | TGTAAGAAAACGTTCCTGATTCTC | 57.219 | 37.500 | 11.49 | 3.10 | 33.92 | 2.87 |
5326 | 7281 | 5.699458 | TGTAAGAAAACGTTCCTGATTCTCC | 59.301 | 40.000 | 11.49 | 7.24 | 33.92 | 3.71 |
5327 | 7282 | 3.676093 | AGAAAACGTTCCTGATTCTCCC | 58.324 | 45.455 | 0.00 | 0.00 | 33.92 | 4.30 |
5328 | 7283 | 2.491675 | AAACGTTCCTGATTCTCCCC | 57.508 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
5329 | 7284 | 1.358152 | AACGTTCCTGATTCTCCCCA | 58.642 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
5330 | 7285 | 1.358152 | ACGTTCCTGATTCTCCCCAA | 58.642 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5331 | 7286 | 1.702957 | ACGTTCCTGATTCTCCCCAAA | 59.297 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
5332 | 7287 | 2.308866 | ACGTTCCTGATTCTCCCCAAAT | 59.691 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
5333 | 7288 | 3.245264 | ACGTTCCTGATTCTCCCCAAATT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
5334 | 7289 | 4.018779 | ACGTTCCTGATTCTCCCCAAATTA | 60.019 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
5335 | 7290 | 4.947388 | CGTTCCTGATTCTCCCCAAATTAA | 59.053 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
5336 | 7291 | 5.163652 | CGTTCCTGATTCTCCCCAAATTAAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
5337 | 7292 | 5.528600 | TCCTGATTCTCCCCAAATTAACA | 57.471 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
5338 | 7293 | 5.898120 | TCCTGATTCTCCCCAAATTAACAA | 58.102 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
5339 | 7294 | 6.502138 | TCCTGATTCTCCCCAAATTAACAAT | 58.498 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5340 | 7295 | 6.959366 | TCCTGATTCTCCCCAAATTAACAATT | 59.041 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
5341 | 7296 | 7.457535 | TCCTGATTCTCCCCAAATTAACAATTT | 59.542 | 33.333 | 0.00 | 0.00 | 41.57 | 1.82 |
5342 | 7297 | 7.765819 | CCTGATTCTCCCCAAATTAACAATTTC | 59.234 | 37.037 | 0.00 | 0.00 | 38.97 | 2.17 |
5343 | 7298 | 8.200024 | TGATTCTCCCCAAATTAACAATTTCA | 57.800 | 30.769 | 0.00 | 0.00 | 38.97 | 2.69 |
5344 | 7299 | 8.654997 | TGATTCTCCCCAAATTAACAATTTCAA | 58.345 | 29.630 | 0.00 | 0.00 | 38.97 | 2.69 |
5345 | 7300 | 9.500785 | GATTCTCCCCAAATTAACAATTTCAAA | 57.499 | 29.630 | 0.00 | 0.00 | 38.97 | 2.69 |
5346 | 7301 | 9.859152 | ATTCTCCCCAAATTAACAATTTCAAAA | 57.141 | 25.926 | 0.00 | 0.00 | 38.97 | 2.44 |
5347 | 7302 | 9.686683 | TTCTCCCCAAATTAACAATTTCAAAAA | 57.313 | 25.926 | 0.00 | 0.00 | 38.97 | 1.94 |
5348 | 7303 | 9.859152 | TCTCCCCAAATTAACAATTTCAAAAAT | 57.141 | 25.926 | 0.00 | 0.00 | 38.97 | 1.82 |
5351 | 7306 | 8.976471 | CCCCAAATTAACAATTTCAAAAATTGC | 58.024 | 29.630 | 19.76 | 0.00 | 38.97 | 3.56 |
5352 | 7307 | 8.976471 | CCCAAATTAACAATTTCAAAAATTGCC | 58.024 | 29.630 | 19.76 | 0.00 | 38.97 | 4.52 |
5353 | 7308 | 8.689069 | CCAAATTAACAATTTCAAAAATTGCCG | 58.311 | 29.630 | 19.76 | 3.29 | 38.97 | 5.69 |
5354 | 7309 | 7.850268 | AATTAACAATTTCAAAAATTGCCGC | 57.150 | 28.000 | 19.76 | 0.00 | 40.35 | 6.53 |
5355 | 7310 | 4.889832 | AACAATTTCAAAAATTGCCGCA | 57.110 | 31.818 | 19.76 | 0.00 | 40.35 | 5.69 |
5356 | 7311 | 4.889832 | ACAATTTCAAAAATTGCCGCAA | 57.110 | 31.818 | 19.76 | 8.55 | 40.35 | 4.85 |
5357 | 7312 | 5.240713 | ACAATTTCAAAAATTGCCGCAAA | 57.759 | 30.435 | 19.76 | 0.00 | 40.35 | 3.68 |
5358 | 7313 | 5.829829 | ACAATTTCAAAAATTGCCGCAAAT | 58.170 | 29.167 | 19.76 | 0.00 | 40.35 | 2.32 |
5359 | 7314 | 6.271566 | ACAATTTCAAAAATTGCCGCAAATT | 58.728 | 28.000 | 19.76 | 5.10 | 40.35 | 1.82 |
5360 | 7315 | 6.755607 | ACAATTTCAAAAATTGCCGCAAATTT | 59.244 | 26.923 | 19.76 | 11.58 | 40.60 | 1.82 |
5361 | 7316 | 6.750775 | ATTTCAAAAATTGCCGCAAATTTG | 57.249 | 29.167 | 26.41 | 26.41 | 39.20 | 2.32 |
5362 | 7317 | 4.889832 | TCAAAAATTGCCGCAAATTTGT | 57.110 | 31.818 | 28.57 | 16.41 | 39.20 | 2.83 |
5363 | 7318 | 5.991328 | TCAAAAATTGCCGCAAATTTGTA | 57.009 | 30.435 | 28.57 | 19.90 | 39.20 | 2.41 |
5364 | 7319 | 6.363577 | TCAAAAATTGCCGCAAATTTGTAA | 57.636 | 29.167 | 28.57 | 17.88 | 39.20 | 2.41 |
5365 | 7320 | 6.425504 | TCAAAAATTGCCGCAAATTTGTAAG | 58.574 | 32.000 | 28.57 | 17.26 | 39.20 | 2.34 |
5366 | 7321 | 6.258727 | TCAAAAATTGCCGCAAATTTGTAAGA | 59.741 | 30.769 | 28.57 | 18.54 | 39.20 | 2.10 |
5367 | 7322 | 6.610741 | AAAATTGCCGCAAATTTGTAAGAA | 57.389 | 29.167 | 16.54 | 8.31 | 39.20 | 2.52 |
5368 | 7323 | 6.610741 | AAATTGCCGCAAATTTGTAAGAAA | 57.389 | 29.167 | 19.03 | 9.51 | 38.12 | 2.52 |
5369 | 7324 | 6.610741 | AATTGCCGCAAATTTGTAAGAAAA | 57.389 | 29.167 | 19.03 | 7.60 | 0.00 | 2.29 |
5370 | 7325 | 5.396750 | TTGCCGCAAATTTGTAAGAAAAC | 57.603 | 34.783 | 19.03 | 0.00 | 0.00 | 2.43 |
5371 | 7326 | 3.487574 | TGCCGCAAATTTGTAAGAAAACG | 59.512 | 39.130 | 19.03 | 10.97 | 0.00 | 3.60 |
5372 | 7327 | 3.487942 | GCCGCAAATTTGTAAGAAAACGT | 59.512 | 39.130 | 19.03 | 0.00 | 0.00 | 3.99 |
5373 | 7328 | 4.026393 | GCCGCAAATTTGTAAGAAAACGTT | 60.026 | 37.500 | 19.03 | 0.00 | 0.00 | 3.99 |
5374 | 7329 | 5.652699 | CCGCAAATTTGTAAGAAAACGTTC | 58.347 | 37.500 | 19.03 | 0.00 | 0.00 | 3.95 |
5375 | 7330 | 5.331980 | CCGCAAATTTGTAAGAAAACGTTCC | 60.332 | 40.000 | 19.03 | 0.00 | 33.92 | 3.62 |
5376 | 7331 | 5.457473 | CGCAAATTTGTAAGAAAACGTTCCT | 59.543 | 36.000 | 19.03 | 0.00 | 33.92 | 3.36 |
5377 | 7332 | 6.559521 | CGCAAATTTGTAAGAAAACGTTCCTG | 60.560 | 38.462 | 19.03 | 0.00 | 33.92 | 3.86 |
5378 | 7333 | 6.474102 | GCAAATTTGTAAGAAAACGTTCCTGA | 59.526 | 34.615 | 19.03 | 0.00 | 33.92 | 3.86 |
5379 | 7334 | 7.169140 | GCAAATTTGTAAGAAAACGTTCCTGAT | 59.831 | 33.333 | 19.03 | 0.00 | 33.92 | 2.90 |
5380 | 7335 | 9.030301 | CAAATTTGTAAGAAAACGTTCCTGATT | 57.970 | 29.630 | 10.15 | 0.00 | 33.92 | 2.57 |
5381 | 7336 | 9.594478 | AAATTTGTAAGAAAACGTTCCTGATTT | 57.406 | 25.926 | 0.00 | 0.00 | 33.92 | 2.17 |
5382 | 7337 | 9.594478 | AATTTGTAAGAAAACGTTCCTGATTTT | 57.406 | 25.926 | 0.00 | 0.00 | 33.92 | 1.82 |
5383 | 7338 | 8.989653 | TTTGTAAGAAAACGTTCCTGATTTTT | 57.010 | 26.923 | 0.00 | 0.00 | 33.92 | 1.94 |
5426 | 7381 | 5.950758 | AAAATGTTAGCGGACAATGTACA | 57.049 | 34.783 | 0.00 | 0.00 | 32.47 | 2.90 |
5427 | 7382 | 4.939509 | AATGTTAGCGGACAATGTACAC | 57.060 | 40.909 | 0.00 | 0.00 | 32.47 | 2.90 |
5428 | 7383 | 2.330286 | TGTTAGCGGACAATGTACACG | 58.670 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
5429 | 7384 | 2.030096 | TGTTAGCGGACAATGTACACGA | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
5430 | 7385 | 2.988493 | GTTAGCGGACAATGTACACGAA | 59.012 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
5431 | 7386 | 2.380084 | AGCGGACAATGTACACGAAT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 3.34 |
5432 | 7387 | 2.695359 | AGCGGACAATGTACACGAATT | 58.305 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
5433 | 7388 | 2.415168 | AGCGGACAATGTACACGAATTG | 59.585 | 45.455 | 0.00 | 1.02 | 39.26 | 2.32 |
5434 | 7389 | 2.475519 | GCGGACAATGTACACGAATTGG | 60.476 | 50.000 | 10.75 | 0.00 | 37.96 | 3.16 |
5435 | 7390 | 2.997303 | CGGACAATGTACACGAATTGGA | 59.003 | 45.455 | 10.75 | 0.00 | 37.96 | 3.53 |
5436 | 7391 | 3.433957 | CGGACAATGTACACGAATTGGAA | 59.566 | 43.478 | 10.75 | 0.00 | 37.96 | 3.53 |
5437 | 7392 | 4.083749 | CGGACAATGTACACGAATTGGAAA | 60.084 | 41.667 | 10.75 | 0.00 | 37.96 | 3.13 |
5438 | 7393 | 5.151389 | GGACAATGTACACGAATTGGAAAC | 58.849 | 41.667 | 10.75 | 1.57 | 37.96 | 2.78 |
5439 | 7394 | 5.278071 | GGACAATGTACACGAATTGGAAACA | 60.278 | 40.000 | 10.75 | 0.00 | 37.96 | 2.83 |
5440 | 7395 | 6.325919 | ACAATGTACACGAATTGGAAACAT | 57.674 | 33.333 | 10.75 | 0.00 | 42.32 | 2.71 |
5441 | 7396 | 6.148948 | ACAATGTACACGAATTGGAAACATG | 58.851 | 36.000 | 10.75 | 0.00 | 42.32 | 3.21 |
5442 | 7397 | 5.957842 | ATGTACACGAATTGGAAACATGT | 57.042 | 34.783 | 0.00 | 0.00 | 42.32 | 3.21 |
5443 | 7398 | 5.759506 | TGTACACGAATTGGAAACATGTT | 57.240 | 34.783 | 4.92 | 4.92 | 42.32 | 2.71 |
5444 | 7399 | 5.753744 | TGTACACGAATTGGAAACATGTTC | 58.246 | 37.500 | 12.39 | 5.57 | 42.32 | 3.18 |
5450 | 7405 | 5.922546 | CGAATTGGAAACATGTTCGTAAGA | 58.077 | 37.500 | 12.39 | 0.00 | 45.68 | 2.10 |
5451 | 7406 | 6.542852 | CGAATTGGAAACATGTTCGTAAGAT | 58.457 | 36.000 | 12.39 | 0.00 | 45.68 | 2.40 |
5452 | 7407 | 6.465781 | CGAATTGGAAACATGTTCGTAAGATG | 59.534 | 38.462 | 12.39 | 0.00 | 45.68 | 2.90 |
5453 | 7408 | 7.447374 | AATTGGAAACATGTTCGTAAGATGA | 57.553 | 32.000 | 12.39 | 0.00 | 44.98 | 2.92 |
5454 | 7409 | 6.869315 | TTGGAAACATGTTCGTAAGATGAA | 57.131 | 33.333 | 12.39 | 0.00 | 44.98 | 2.57 |
5455 | 7410 | 6.869315 | TGGAAACATGTTCGTAAGATGAAA | 57.131 | 33.333 | 12.39 | 0.00 | 41.26 | 2.69 |
5456 | 7411 | 6.664515 | TGGAAACATGTTCGTAAGATGAAAC | 58.335 | 36.000 | 12.39 | 0.00 | 41.26 | 2.78 |
5457 | 7412 | 6.261158 | TGGAAACATGTTCGTAAGATGAAACA | 59.739 | 34.615 | 12.39 | 0.00 | 41.26 | 2.83 |
5458 | 7413 | 7.519809 | TGGAAACATGTTCGTAAGATGAAACAG | 60.520 | 37.037 | 12.39 | 0.00 | 41.26 | 3.16 |
5466 | 7421 | 5.860611 | TCGTAAGATGAAACAGAAAAGGGA | 58.139 | 37.500 | 0.00 | 0.00 | 45.01 | 4.20 |
5467 | 7422 | 6.292923 | TCGTAAGATGAAACAGAAAAGGGAA | 58.707 | 36.000 | 0.00 | 0.00 | 45.01 | 3.97 |
5468 | 7423 | 6.426937 | TCGTAAGATGAAACAGAAAAGGGAAG | 59.573 | 38.462 | 0.00 | 0.00 | 45.01 | 3.46 |
5469 | 7424 | 6.426937 | CGTAAGATGAAACAGAAAAGGGAAGA | 59.573 | 38.462 | 0.00 | 0.00 | 43.02 | 2.87 |
5470 | 7425 | 6.890979 | AAGATGAAACAGAAAAGGGAAGAG | 57.109 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
5471 | 7426 | 5.320277 | AGATGAAACAGAAAAGGGAAGAGG | 58.680 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
5472 | 7427 | 4.788925 | TGAAACAGAAAAGGGAAGAGGA | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
5473 | 7428 | 5.124036 | TGAAACAGAAAAGGGAAGAGGAA | 57.876 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
5474 | 7429 | 5.515106 | TGAAACAGAAAAGGGAAGAGGAAA | 58.485 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
5475 | 7430 | 5.955355 | TGAAACAGAAAAGGGAAGAGGAAAA | 59.045 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5476 | 7431 | 6.439058 | TGAAACAGAAAAGGGAAGAGGAAAAA | 59.561 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
5477 | 7432 | 7.125659 | TGAAACAGAAAAGGGAAGAGGAAAAAT | 59.874 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
5478 | 7433 | 8.547481 | AAACAGAAAAGGGAAGAGGAAAAATA | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5479 | 7434 | 8.547481 | AACAGAAAAGGGAAGAGGAAAAATAA | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5480 | 7435 | 8.547481 | ACAGAAAAGGGAAGAGGAAAAATAAA | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5481 | 7436 | 8.988060 | ACAGAAAAGGGAAGAGGAAAAATAAAA | 58.012 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
49 | 50 | 1.737838 | TGGCGGAAGTTATCAAGCTG | 58.262 | 50.000 | 0.00 | 0.00 | 34.76 | 4.24 |
64 | 65 | 3.127548 | ACTGATTAGCTTGATGTTTGGCG | 59.872 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
76 | 77 | 9.810545 | GAGAACTTGATTAGTAACTGATTAGCT | 57.189 | 33.333 | 0.00 | 0.00 | 35.54 | 3.32 |
152 | 162 | 2.102925 | ACAAATGTCAGGGGTTTTGCAG | 59.897 | 45.455 | 0.00 | 0.00 | 33.43 | 4.41 |
168 | 178 | 1.202879 | TCCCGCAGACCAAAGACAAAT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
199 | 209 | 3.691342 | CCGCCGAGTGGTCCAGAA | 61.691 | 66.667 | 0.00 | 0.00 | 37.67 | 3.02 |
203 | 213 | 4.570663 | CGATCCGCCGAGTGGTCC | 62.571 | 72.222 | 3.84 | 0.00 | 37.67 | 4.46 |
204 | 214 | 1.512996 | TATCGATCCGCCGAGTGGTC | 61.513 | 60.000 | 0.00 | 1.54 | 42.21 | 4.02 |
215 | 225 | 1.006102 | CACGGGGCTGTATCGATCC | 60.006 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
219 | 229 | 0.390603 | TTCAACACGGGGCTGTATCG | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
224 | 234 | 0.888736 | TGTCATTCAACACGGGGCTG | 60.889 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
225 | 235 | 0.889186 | GTGTCATTCAACACGGGGCT | 60.889 | 55.000 | 0.00 | 0.00 | 40.09 | 5.19 |
237 | 247 | 1.942677 | TTCGGACGTGTTGTGTCATT | 58.057 | 45.000 | 0.00 | 0.00 | 38.10 | 2.57 |
240 | 250 | 0.042448 | GCTTTCGGACGTGTTGTGTC | 60.042 | 55.000 | 0.00 | 0.00 | 35.60 | 3.67 |
254 | 264 | 1.886886 | TACGTTTGGACCCTGCTTTC | 58.113 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
266 | 276 | 0.513820 | AAACCGTCCGCATACGTTTG | 59.486 | 50.000 | 0.00 | 0.00 | 41.27 | 2.93 |
268 | 278 | 0.319727 | TCAAACCGTCCGCATACGTT | 60.320 | 50.000 | 0.00 | 0.09 | 41.27 | 3.99 |
273 | 283 | 0.389948 | GACTCTCAAACCGTCCGCAT | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
287 | 297 | 4.021104 | TCGGTCATCTTCAATGTTGACTCT | 60.021 | 41.667 | 0.00 | 0.00 | 36.83 | 3.24 |
289 | 299 | 4.248859 | CTCGGTCATCTTCAATGTTGACT | 58.751 | 43.478 | 0.00 | 0.00 | 36.83 | 3.41 |
293 | 303 | 2.290260 | TGGCTCGGTCATCTTCAATGTT | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
294 | 304 | 1.278985 | TGGCTCGGTCATCTTCAATGT | 59.721 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
296 | 306 | 2.787473 | TTGGCTCGGTCATCTTCAAT | 57.213 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
306 | 316 | 3.279434 | GGATGAGTAAAATTGGCTCGGT | 58.721 | 45.455 | 0.00 | 0.00 | 32.32 | 4.69 |
337 | 347 | 0.109597 | GTTGCTCGCATTCAACCCAG | 60.110 | 55.000 | 0.00 | 0.00 | 37.26 | 4.45 |
400 | 411 | 4.796231 | ATCACCGACGCCGAGCAC | 62.796 | 66.667 | 0.00 | 0.00 | 38.22 | 4.40 |
487 | 504 | 2.485795 | ATCTCTCTCTGTCCGCGCC | 61.486 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
493 | 510 | 0.527385 | GCGCACCATCTCTCTCTGTC | 60.527 | 60.000 | 0.30 | 0.00 | 0.00 | 3.51 |
495 | 512 | 1.588403 | CGCGCACCATCTCTCTCTG | 60.588 | 63.158 | 8.75 | 0.00 | 0.00 | 3.35 |
496 | 513 | 2.804167 | CGCGCACCATCTCTCTCT | 59.196 | 61.111 | 8.75 | 0.00 | 0.00 | 3.10 |
497 | 514 | 2.959071 | GCGCGCACCATCTCTCTC | 60.959 | 66.667 | 29.10 | 0.00 | 0.00 | 3.20 |
498 | 515 | 4.862092 | CGCGCGCACCATCTCTCT | 62.862 | 66.667 | 32.61 | 0.00 | 0.00 | 3.10 |
499 | 516 | 3.751401 | TACGCGCGCACCATCTCTC | 62.751 | 63.158 | 32.58 | 0.00 | 0.00 | 3.20 |
582 | 599 | 1.421410 | ATCAAATCGGTCGACTGCGC | 61.421 | 55.000 | 19.89 | 0.00 | 37.46 | 6.09 |
598 | 616 | 1.039856 | TGGAGCTAGTATGCGCATCA | 58.960 | 50.000 | 29.11 | 13.28 | 38.13 | 3.07 |
602 | 620 | 2.229965 | GCTTGGAGCTAGTATGCGC | 58.770 | 57.895 | 0.00 | 0.00 | 38.45 | 6.09 |
635 | 653 | 0.647410 | CGACGAAATGCAGCAGTAGG | 59.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
683 | 709 | 2.357760 | CACCAACCCCCGTACACG | 60.358 | 66.667 | 0.00 | 0.00 | 39.44 | 4.49 |
684 | 710 | 1.004200 | CTCACCAACCCCCGTACAC | 60.004 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
685 | 711 | 2.218454 | CCTCACCAACCCCCGTACA | 61.218 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
687 | 713 | 2.608368 | CCCTCACCAACCCCCGTA | 60.608 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
763 | 794 | 1.482182 | TCAATCGTGGGAGAGATGTGG | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
799 | 830 | 3.256631 | GTGGGCTCATTAATTAGGGCATG | 59.743 | 47.826 | 0.00 | 0.00 | 0.00 | 4.06 |
978 | 1536 | 0.608308 | GGACCAAGGGTAAGGTGTGC | 60.608 | 60.000 | 0.00 | 0.00 | 38.50 | 4.57 |
985 | 1543 | 7.256908 | GGCTATTTATAGATGGACCAAGGGTAA | 60.257 | 40.741 | 0.00 | 0.00 | 31.69 | 2.85 |
1065 | 1624 | 2.224209 | CGGAGAAACAGTGGTACCAGTT | 60.224 | 50.000 | 20.09 | 15.90 | 0.00 | 3.16 |
1097 | 1656 | 4.062293 | GGTGTGTGTGTGTGTGTATGTAT | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1101 | 1660 | 2.700722 | TGGTGTGTGTGTGTGTGTAT | 57.299 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1103 | 1662 | 1.164411 | CTTGGTGTGTGTGTGTGTGT | 58.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1104 | 1663 | 1.447945 | TCTTGGTGTGTGTGTGTGTG | 58.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1105 | 1664 | 2.016318 | CATCTTGGTGTGTGTGTGTGT | 58.984 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
1106 | 1665 | 2.016318 | ACATCTTGGTGTGTGTGTGTG | 58.984 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
1107 | 1666 | 2.418368 | ACATCTTGGTGTGTGTGTGT | 57.582 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1174 | 1742 | 3.322466 | CACCGACCCCTTGAGCCT | 61.322 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
1379 | 1947 | 2.969990 | AGCTAGTCAGACACTGCATTG | 58.030 | 47.619 | 2.66 | 1.95 | 36.43 | 2.82 |
1381 | 1949 | 2.301296 | ACAAGCTAGTCAGACACTGCAT | 59.699 | 45.455 | 2.66 | 0.00 | 36.43 | 3.96 |
1742 | 2649 | 2.286294 | GCATCCACTGAACACATCGATC | 59.714 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2076 | 3123 | 2.288825 | CGTAAGTTCCAAGGAGAGTGCA | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2448 | 3553 | 7.954666 | ATAAGTTGGTAGGTAGGTACGTTTA | 57.045 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2507 | 3721 | 9.601217 | GTTTGATGATCCTATGTACTTGTAGTT | 57.399 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2508 | 3722 | 7.921214 | CGTTTGATGATCCTATGTACTTGTAGT | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2511 | 3725 | 6.640518 | ACGTTTGATGATCCTATGTACTTGT | 58.359 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2512 | 3726 | 7.401860 | CAACGTTTGATGATCCTATGTACTTG | 58.598 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2513 | 3727 | 6.538742 | CCAACGTTTGATGATCCTATGTACTT | 59.461 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2514 | 3728 | 6.049149 | CCAACGTTTGATGATCCTATGTACT | 58.951 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2674 | 3893 | 8.519526 | GGCCGATGGATATATGAATTTGTTTAA | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2713 | 4008 | 9.477484 | ACCATTCGTTTAGTCTATGCTTAATAG | 57.523 | 33.333 | 0.00 | 0.00 | 39.86 | 1.73 |
2815 | 4114 | 1.003355 | CTCGGTGATGGTGCTGGTT | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
3505 | 4805 | 5.601729 | TGCCCCTGCATTTCATTGATTTATA | 59.398 | 36.000 | 0.00 | 0.00 | 44.23 | 0.98 |
3507 | 4807 | 3.773667 | TGCCCCTGCATTTCATTGATTTA | 59.226 | 39.130 | 0.00 | 0.00 | 44.23 | 1.40 |
3509 | 4809 | 2.189676 | TGCCCCTGCATTTCATTGATT | 58.810 | 42.857 | 0.00 | 0.00 | 44.23 | 2.57 |
3510 | 4810 | 1.868713 | TGCCCCTGCATTTCATTGAT | 58.131 | 45.000 | 0.00 | 0.00 | 44.23 | 2.57 |
3511 | 4811 | 3.377848 | TGCCCCTGCATTTCATTGA | 57.622 | 47.368 | 0.00 | 0.00 | 44.23 | 2.57 |
4349 | 5703 | 4.226427 | AGCAAATGATCCTAGAAGCACA | 57.774 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
4365 | 5719 | 6.537301 | CCGGTGTACTAGATTATTCAAGCAAA | 59.463 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
4438 | 6380 | 2.423538 | GGAACATACATTGACCAGTGGC | 59.576 | 50.000 | 9.78 | 2.56 | 0.00 | 5.01 |
4439 | 6381 | 3.684908 | TGGAACATACATTGACCAGTGG | 58.315 | 45.455 | 7.91 | 7.91 | 33.80 | 4.00 |
4455 | 6397 | 8.846943 | ATTTGGAAGGAAAAATTACATGGAAC | 57.153 | 30.769 | 0.00 | 0.00 | 0.00 | 3.62 |
4657 | 6603 | 2.888594 | TCTAGGCACATTAGCGACAAC | 58.111 | 47.619 | 0.00 | 0.00 | 34.64 | 3.32 |
4687 | 6633 | 6.754702 | ATCATTGCATGCAGTTAGATATCC | 57.245 | 37.500 | 21.50 | 0.00 | 0.00 | 2.59 |
4718 | 6664 | 1.275010 | TCTCTCAATGCACCGCTTACA | 59.725 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
4821 | 6767 | 4.584029 | CGAAATACATGTCGTTCTGCTT | 57.416 | 40.909 | 0.00 | 0.00 | 32.61 | 3.91 |
5057 | 7005 | 2.363680 | TGATCACACATTGCCGGTTTTT | 59.636 | 40.909 | 1.90 | 0.00 | 0.00 | 1.94 |
5087 | 7035 | 4.966965 | TGACGGACTCAAGACTATTCTC | 57.033 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
5089 | 7037 | 5.061920 | AGTTGACGGACTCAAGACTATTC | 57.938 | 43.478 | 0.00 | 0.00 | 39.69 | 1.75 |
5098 | 7046 | 3.812156 | TTCAAAGAGTTGACGGACTCA | 57.188 | 42.857 | 15.24 | 0.00 | 46.69 | 3.41 |
5105 | 7053 | 6.074142 | GCAATGGTCATTTTCAAAGAGTTGAC | 60.074 | 38.462 | 0.00 | 0.00 | 43.52 | 3.18 |
5111 | 7059 | 6.289834 | ACAATGCAATGGTCATTTTCAAAGA | 58.710 | 32.000 | 6.73 | 0.00 | 32.30 | 2.52 |
5112 | 7060 | 6.548441 | ACAATGCAATGGTCATTTTCAAAG | 57.452 | 33.333 | 6.73 | 0.00 | 32.30 | 2.77 |
5137 | 7085 | 3.244215 | CCTGGACTCTTAACTGCTCAACA | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
5148 | 7096 | 3.335786 | TGAGGGTCTTACCTGGACTCTTA | 59.664 | 47.826 | 0.00 | 0.00 | 43.65 | 2.10 |
5156 | 7104 | 3.367498 | CGAGAAGTTGAGGGTCTTACCTG | 60.367 | 52.174 | 0.00 | 0.00 | 42.10 | 4.00 |
5170 | 7118 | 1.148157 | CGCATGCGATCCGAGAAGTT | 61.148 | 55.000 | 35.82 | 0.00 | 42.83 | 2.66 |
5182 | 7130 | 0.920664 | TGATAAAGTCGTCGCATGCG | 59.079 | 50.000 | 33.61 | 33.61 | 41.35 | 4.73 |
5185 | 7133 | 5.773575 | ACAGATATGATAAAGTCGTCGCAT | 58.226 | 37.500 | 0.00 | 0.00 | 0.00 | 4.73 |
5186 | 7134 | 5.183014 | ACAGATATGATAAAGTCGTCGCA | 57.817 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
5206 | 7161 | 2.545113 | GGACTCTCAACTGCGTGTTACA | 60.545 | 50.000 | 0.00 | 0.00 | 37.07 | 2.41 |
5209 | 7164 | 0.464036 | TGGACTCTCAACTGCGTGTT | 59.536 | 50.000 | 0.00 | 0.00 | 39.92 | 3.32 |
5230 | 7185 | 5.827267 | ACTATAAAAGGAGGAGGACGACTAC | 59.173 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5236 | 7191 | 3.492829 | CGCCACTATAAAAGGAGGAGGAC | 60.493 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
5261 | 7216 | 5.247337 | TGAAATTGTTAATTTGGGGAGGTCC | 59.753 | 40.000 | 4.42 | 0.00 | 40.97 | 4.46 |
5263 | 7218 | 6.755542 | TTGAAATTGTTAATTTGGGGAGGT | 57.244 | 33.333 | 4.42 | 0.00 | 40.97 | 3.85 |
5290 | 7245 | 4.026475 | CGTTTTCTTACAAATTTGCGGCAA | 60.026 | 37.500 | 18.12 | 12.11 | 0.00 | 4.52 |
5317 | 7272 | 8.313292 | TGAAATTGTTAATTTGGGGAGAATCAG | 58.687 | 33.333 | 4.42 | 0.00 | 40.97 | 2.90 |
5325 | 7280 | 8.976471 | GCAATTTTTGAAATTGTTAATTTGGGG | 58.024 | 29.630 | 20.77 | 0.17 | 40.97 | 4.96 |
5326 | 7281 | 8.976471 | GGCAATTTTTGAAATTGTTAATTTGGG | 58.024 | 29.630 | 20.77 | 0.56 | 40.97 | 4.12 |
5327 | 7282 | 8.689069 | CGGCAATTTTTGAAATTGTTAATTTGG | 58.311 | 29.630 | 20.77 | 1.10 | 40.97 | 3.28 |
5328 | 7283 | 8.206600 | GCGGCAATTTTTGAAATTGTTAATTTG | 58.793 | 29.630 | 20.77 | 9.26 | 40.97 | 2.32 |
5329 | 7284 | 7.917505 | TGCGGCAATTTTTGAAATTGTTAATTT | 59.082 | 25.926 | 20.77 | 0.00 | 43.43 | 1.82 |
5330 | 7285 | 7.420800 | TGCGGCAATTTTTGAAATTGTTAATT | 58.579 | 26.923 | 20.77 | 1.36 | 39.25 | 1.40 |
5331 | 7286 | 6.963796 | TGCGGCAATTTTTGAAATTGTTAAT | 58.036 | 28.000 | 20.77 | 0.00 | 39.25 | 1.40 |
5332 | 7287 | 6.363577 | TGCGGCAATTTTTGAAATTGTTAA | 57.636 | 29.167 | 20.77 | 7.79 | 39.25 | 2.01 |
5333 | 7288 | 5.991328 | TGCGGCAATTTTTGAAATTGTTA | 57.009 | 30.435 | 20.77 | 8.04 | 39.25 | 2.41 |
5334 | 7289 | 4.889832 | TGCGGCAATTTTTGAAATTGTT | 57.110 | 31.818 | 20.77 | 0.00 | 39.25 | 2.83 |
5335 | 7290 | 4.889832 | TTGCGGCAATTTTTGAAATTGT | 57.110 | 31.818 | 20.77 | 0.00 | 39.25 | 2.71 |
5336 | 7291 | 6.750775 | AATTTGCGGCAATTTTTGAAATTG | 57.249 | 29.167 | 17.19 | 17.44 | 39.84 | 2.32 |
5337 | 7292 | 6.755607 | ACAAATTTGCGGCAATTTTTGAAATT | 59.244 | 26.923 | 34.16 | 20.94 | 34.23 | 1.82 |
5338 | 7293 | 6.271566 | ACAAATTTGCGGCAATTTTTGAAAT | 58.728 | 28.000 | 34.16 | 21.40 | 34.23 | 2.17 |
5339 | 7294 | 5.644644 | ACAAATTTGCGGCAATTTTTGAAA | 58.355 | 29.167 | 34.16 | 16.37 | 34.23 | 2.69 |
5340 | 7295 | 5.240713 | ACAAATTTGCGGCAATTTTTGAA | 57.759 | 30.435 | 34.16 | 16.94 | 34.23 | 2.69 |
5341 | 7296 | 4.889832 | ACAAATTTGCGGCAATTTTTGA | 57.110 | 31.818 | 34.16 | 17.50 | 34.23 | 2.69 |
5342 | 7297 | 6.425504 | TCTTACAAATTTGCGGCAATTTTTG | 58.574 | 32.000 | 30.05 | 30.05 | 35.21 | 2.44 |
5343 | 7298 | 6.610741 | TCTTACAAATTTGCGGCAATTTTT | 57.389 | 29.167 | 24.81 | 19.72 | 28.65 | 1.94 |
5344 | 7299 | 6.610741 | TTCTTACAAATTTGCGGCAATTTT | 57.389 | 29.167 | 22.78 | 22.78 | 30.40 | 1.82 |
5345 | 7300 | 6.610741 | TTTCTTACAAATTTGCGGCAATTT | 57.389 | 29.167 | 17.19 | 15.94 | 0.00 | 1.82 |
5346 | 7301 | 6.426327 | GTTTTCTTACAAATTTGCGGCAATT | 58.574 | 32.000 | 17.19 | 10.35 | 0.00 | 2.32 |
5347 | 7302 | 5.332959 | CGTTTTCTTACAAATTTGCGGCAAT | 60.333 | 36.000 | 17.19 | 3.49 | 0.00 | 3.56 |
5348 | 7303 | 4.026475 | CGTTTTCTTACAAATTTGCGGCAA | 60.026 | 37.500 | 18.12 | 12.11 | 0.00 | 4.52 |
5349 | 7304 | 3.487574 | CGTTTTCTTACAAATTTGCGGCA | 59.512 | 39.130 | 18.12 | 0.00 | 0.00 | 5.69 |
5350 | 7305 | 3.487942 | ACGTTTTCTTACAAATTTGCGGC | 59.512 | 39.130 | 18.12 | 0.00 | 0.00 | 6.53 |
5351 | 7306 | 5.331980 | GGAACGTTTTCTTACAAATTTGCGG | 60.332 | 40.000 | 18.12 | 8.44 | 31.71 | 5.69 |
5352 | 7307 | 5.457473 | AGGAACGTTTTCTTACAAATTTGCG | 59.543 | 36.000 | 18.12 | 12.54 | 31.71 | 4.85 |
5353 | 7308 | 6.474102 | TCAGGAACGTTTTCTTACAAATTTGC | 59.526 | 34.615 | 18.12 | 0.00 | 31.71 | 3.68 |
5354 | 7309 | 7.979115 | TCAGGAACGTTTTCTTACAAATTTG | 57.021 | 32.000 | 16.67 | 16.67 | 31.71 | 2.32 |
5355 | 7310 | 9.594478 | AAATCAGGAACGTTTTCTTACAAATTT | 57.406 | 25.926 | 0.46 | 2.76 | 31.71 | 1.82 |
5356 | 7311 | 9.594478 | AAAATCAGGAACGTTTTCTTACAAATT | 57.406 | 25.926 | 0.46 | 0.00 | 31.71 | 1.82 |
5357 | 7312 | 9.594478 | AAAAATCAGGAACGTTTTCTTACAAAT | 57.406 | 25.926 | 0.46 | 0.00 | 31.71 | 2.32 |
5358 | 7313 | 8.989653 | AAAAATCAGGAACGTTTTCTTACAAA | 57.010 | 26.923 | 0.46 | 0.00 | 31.71 | 2.83 |
5403 | 7358 | 6.146898 | GTGTACATTGTCCGCTAACATTTTT | 58.853 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5404 | 7359 | 5.615984 | CGTGTACATTGTCCGCTAACATTTT | 60.616 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5405 | 7360 | 4.142988 | CGTGTACATTGTCCGCTAACATTT | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
5406 | 7361 | 3.369756 | CGTGTACATTGTCCGCTAACATT | 59.630 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
5407 | 7362 | 2.927477 | CGTGTACATTGTCCGCTAACAT | 59.073 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
5408 | 7363 | 2.030096 | TCGTGTACATTGTCCGCTAACA | 60.030 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
5409 | 7364 | 2.598589 | TCGTGTACATTGTCCGCTAAC | 58.401 | 47.619 | 0.00 | 0.00 | 0.00 | 2.34 |
5410 | 7365 | 3.300852 | TTCGTGTACATTGTCCGCTAA | 57.699 | 42.857 | 0.00 | 0.00 | 0.00 | 3.09 |
5411 | 7366 | 3.513680 | ATTCGTGTACATTGTCCGCTA | 57.486 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
5412 | 7367 | 2.380084 | ATTCGTGTACATTGTCCGCT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 5.52 |
5413 | 7368 | 2.475519 | CCAATTCGTGTACATTGTCCGC | 60.476 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
5414 | 7369 | 2.997303 | TCCAATTCGTGTACATTGTCCG | 59.003 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5415 | 7370 | 5.151389 | GTTTCCAATTCGTGTACATTGTCC | 58.849 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
5416 | 7371 | 5.753744 | TGTTTCCAATTCGTGTACATTGTC | 58.246 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
5417 | 7372 | 5.759506 | TGTTTCCAATTCGTGTACATTGT | 57.240 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
5418 | 7373 | 6.148948 | ACATGTTTCCAATTCGTGTACATTG | 58.851 | 36.000 | 0.00 | 0.00 | 30.89 | 2.82 |
5419 | 7374 | 6.325919 | ACATGTTTCCAATTCGTGTACATT | 57.674 | 33.333 | 0.00 | 0.00 | 30.89 | 2.71 |
5420 | 7375 | 5.957842 | ACATGTTTCCAATTCGTGTACAT | 57.042 | 34.783 | 0.00 | 0.00 | 30.89 | 2.29 |
5421 | 7376 | 5.559225 | CGAACATGTTTCCAATTCGTGTACA | 60.559 | 40.000 | 13.36 | 0.00 | 37.95 | 2.90 |
5422 | 7377 | 4.843984 | CGAACATGTTTCCAATTCGTGTAC | 59.156 | 41.667 | 13.36 | 0.00 | 37.95 | 2.90 |
5423 | 7378 | 4.512198 | ACGAACATGTTTCCAATTCGTGTA | 59.488 | 37.500 | 16.30 | 0.00 | 46.27 | 2.90 |
5424 | 7379 | 3.314080 | ACGAACATGTTTCCAATTCGTGT | 59.686 | 39.130 | 16.30 | 0.00 | 46.27 | 4.49 |
5425 | 7380 | 3.884169 | ACGAACATGTTTCCAATTCGTG | 58.116 | 40.909 | 16.30 | 0.22 | 46.27 | 4.35 |
5427 | 7382 | 5.922546 | TCTTACGAACATGTTTCCAATTCG | 58.077 | 37.500 | 13.36 | 12.13 | 43.48 | 3.34 |
5428 | 7383 | 7.526608 | TCATCTTACGAACATGTTTCCAATTC | 58.473 | 34.615 | 13.36 | 0.00 | 0.00 | 2.17 |
5429 | 7384 | 7.447374 | TCATCTTACGAACATGTTTCCAATT | 57.553 | 32.000 | 13.36 | 0.00 | 0.00 | 2.32 |
5430 | 7385 | 7.447374 | TTCATCTTACGAACATGTTTCCAAT | 57.553 | 32.000 | 13.36 | 0.00 | 0.00 | 3.16 |
5431 | 7386 | 6.869315 | TTCATCTTACGAACATGTTTCCAA | 57.131 | 33.333 | 13.36 | 6.09 | 0.00 | 3.53 |
5432 | 7387 | 6.261158 | TGTTTCATCTTACGAACATGTTTCCA | 59.739 | 34.615 | 13.36 | 0.00 | 0.00 | 3.53 |
5433 | 7388 | 6.664515 | TGTTTCATCTTACGAACATGTTTCC | 58.335 | 36.000 | 13.36 | 0.00 | 0.00 | 3.13 |
5434 | 7389 | 7.572759 | TCTGTTTCATCTTACGAACATGTTTC | 58.427 | 34.615 | 13.36 | 5.34 | 32.23 | 2.78 |
5435 | 7390 | 7.490962 | TCTGTTTCATCTTACGAACATGTTT | 57.509 | 32.000 | 13.36 | 0.00 | 32.23 | 2.83 |
5436 | 7391 | 7.490962 | TTCTGTTTCATCTTACGAACATGTT | 57.509 | 32.000 | 11.78 | 11.78 | 32.23 | 2.71 |
5437 | 7392 | 7.490962 | TTTCTGTTTCATCTTACGAACATGT | 57.509 | 32.000 | 0.00 | 0.00 | 32.23 | 3.21 |
5438 | 7393 | 7.535258 | CCTTTTCTGTTTCATCTTACGAACATG | 59.465 | 37.037 | 0.00 | 0.00 | 32.23 | 3.21 |
5439 | 7394 | 7.308589 | CCCTTTTCTGTTTCATCTTACGAACAT | 60.309 | 37.037 | 0.00 | 0.00 | 32.23 | 2.71 |
5440 | 7395 | 6.017440 | CCCTTTTCTGTTTCATCTTACGAACA | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
5441 | 7396 | 6.204108 | TCCCTTTTCTGTTTCATCTTACGAAC | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
5442 | 7397 | 6.292923 | TCCCTTTTCTGTTTCATCTTACGAA | 58.707 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5443 | 7398 | 5.860611 | TCCCTTTTCTGTTTCATCTTACGA | 58.139 | 37.500 | 0.00 | 0.00 | 0.00 | 3.43 |
5444 | 7399 | 6.426937 | TCTTCCCTTTTCTGTTTCATCTTACG | 59.573 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
5445 | 7400 | 7.094592 | CCTCTTCCCTTTTCTGTTTCATCTTAC | 60.095 | 40.741 | 0.00 | 0.00 | 0.00 | 2.34 |
5446 | 7401 | 6.942576 | CCTCTTCCCTTTTCTGTTTCATCTTA | 59.057 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
5447 | 7402 | 5.772169 | CCTCTTCCCTTTTCTGTTTCATCTT | 59.228 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5448 | 7403 | 5.073691 | TCCTCTTCCCTTTTCTGTTTCATCT | 59.926 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5449 | 7404 | 5.316987 | TCCTCTTCCCTTTTCTGTTTCATC | 58.683 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
5450 | 7405 | 5.324832 | TCCTCTTCCCTTTTCTGTTTCAT | 57.675 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
5451 | 7406 | 4.788925 | TCCTCTTCCCTTTTCTGTTTCA | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
5452 | 7407 | 6.465439 | TTTTCCTCTTCCCTTTTCTGTTTC | 57.535 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
5453 | 7408 | 6.867519 | TTTTTCCTCTTCCCTTTTCTGTTT | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
5454 | 7409 | 8.547481 | TTATTTTTCCTCTTCCCTTTTCTGTT | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
5455 | 7410 | 8.547481 | TTTATTTTTCCTCTTCCCTTTTCTGT | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.