Multiple sequence alignment - TraesCS5D01G387800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G387800 chr5D 100.000 3569 0 0 1 3569 457627349 457630917 0.000000e+00 6591.0
1 TraesCS5D01G387800 chr5A 94.824 1932 76 8 794 2708 575525981 575527905 0.000000e+00 2992.0
2 TraesCS5D01G387800 chr5A 92.308 780 36 7 7 778 575525231 575525994 0.000000e+00 1086.0
3 TraesCS5D01G387800 chr5A 90.250 800 57 10 2777 3563 575528303 575529094 0.000000e+00 1026.0
4 TraesCS5D01G387800 chr5B 95.126 1826 71 5 822 2645 559682665 559684474 0.000000e+00 2863.0
5 TraesCS5D01G387800 chr5B 90.274 802 38 13 5 778 559681874 559682663 0.000000e+00 1013.0
6 TraesCS5D01G387800 chr5B 81.449 911 109 30 2706 3563 559684595 559685498 0.000000e+00 691.0
7 TraesCS5D01G387800 chr6D 80.292 137 13 9 2895 3018 385651898 385651763 1.360000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G387800 chr5D 457627349 457630917 3568 False 6591.000000 6591 100.000000 1 3569 1 chr5D.!!$F1 3568
1 TraesCS5D01G387800 chr5A 575525231 575529094 3863 False 1701.333333 2992 92.460667 7 3563 3 chr5A.!!$F1 3556
2 TraesCS5D01G387800 chr5B 559681874 559685498 3624 False 1522.333333 2863 88.949667 5 3563 3 chr5B.!!$F1 3558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1005 0.908910 ACACAGTCACCACCTTCACA 59.091 50.0 0.00 0.0 0.00 3.58 F
1011 1054 0.179048 TACAGAGGATGGCAATGGCG 60.179 55.0 1.51 0.0 42.47 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2260 0.391661 CGACAAGGCAGCCATAGTGT 60.392 55.0 15.8 11.88 0.00 3.55 R
3007 3389 0.034059 AGAAGAGTGGGCAAGTCGTG 59.966 55.0 0.0 0.00 33.01 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 155 8.788806 CCTGTGTAAGTAACCACAAAAATATCA 58.211 33.333 0.00 0.00 40.77 2.15
324 334 4.573900 TGCTGGTTTTTGTGACAAAATGT 58.426 34.783 22.41 0.00 0.00 2.71
395 420 3.668447 TCACAATCTCTGTTGAAGGAGC 58.332 45.455 0.00 0.00 35.47 4.70
512 537 4.576053 TGTGCATTACATTATCTCTGGTGC 59.424 41.667 0.00 0.00 33.42 5.01
715 744 3.988379 TGTTGCTGTGAATGGAACTTC 57.012 42.857 0.00 0.00 36.83 3.01
730 759 5.376625 TGGAACTTCTGCTATTTTGTGAGT 58.623 37.500 0.00 0.00 0.00 3.41
731 760 5.470098 TGGAACTTCTGCTATTTTGTGAGTC 59.530 40.000 0.00 0.00 0.00 3.36
732 761 5.703130 GGAACTTCTGCTATTTTGTGAGTCT 59.297 40.000 0.00 0.00 0.00 3.24
733 762 6.348050 GGAACTTCTGCTATTTTGTGAGTCTG 60.348 42.308 0.00 0.00 0.00 3.51
734 763 5.858381 ACTTCTGCTATTTTGTGAGTCTGA 58.142 37.500 0.00 0.00 0.00 3.27
735 764 6.471146 ACTTCTGCTATTTTGTGAGTCTGAT 58.529 36.000 0.00 0.00 0.00 2.90
736 765 6.939163 ACTTCTGCTATTTTGTGAGTCTGATT 59.061 34.615 0.00 0.00 0.00 2.57
737 766 8.097038 ACTTCTGCTATTTTGTGAGTCTGATTA 58.903 33.333 0.00 0.00 0.00 1.75
754 783 9.761504 AGTCTGATTATCTGATTACAACATGAG 57.238 33.333 0.00 0.00 0.00 2.90
758 787 9.330063 TGATTATCTGATTACAACATGAGGAAC 57.670 33.333 0.00 0.00 0.00 3.62
778 807 2.964464 ACATGCAACCTTCCATTTGACA 59.036 40.909 0.00 0.00 0.00 3.58
779 808 3.579586 ACATGCAACCTTCCATTTGACAT 59.420 39.130 0.00 0.00 0.00 3.06
780 809 4.040706 ACATGCAACCTTCCATTTGACATT 59.959 37.500 0.00 0.00 0.00 2.71
781 810 4.686191 TGCAACCTTCCATTTGACATTT 57.314 36.364 0.00 0.00 0.00 2.32
782 811 5.033589 TGCAACCTTCCATTTGACATTTT 57.966 34.783 0.00 0.00 0.00 1.82
783 812 5.435291 TGCAACCTTCCATTTGACATTTTT 58.565 33.333 0.00 0.00 0.00 1.94
811 840 5.652452 AGGATTACCTACCATTTGACTTTGC 59.348 40.000 0.00 0.00 45.83 3.68
833 862 2.045536 GGAGCCTGCCCAGACTTG 60.046 66.667 0.00 0.00 0.00 3.16
834 863 2.596851 GGAGCCTGCCCAGACTTGA 61.597 63.158 0.00 0.00 0.00 3.02
835 864 1.078567 GAGCCTGCCCAGACTTGAG 60.079 63.158 0.00 0.00 0.00 3.02
836 865 1.835927 GAGCCTGCCCAGACTTGAGT 61.836 60.000 0.00 0.00 0.00 3.41
837 866 1.673665 GCCTGCCCAGACTTGAGTG 60.674 63.158 0.00 0.00 0.00 3.51
848 878 3.571401 CAGACTTGAGTGAAAAGCCCAAT 59.429 43.478 0.00 0.00 0.00 3.16
856 886 5.779771 TGAGTGAAAAGCCCAATCCTAATTT 59.220 36.000 0.00 0.00 0.00 1.82
863 893 2.476199 CCCAATCCTAATTTGGCCCAA 58.524 47.619 0.00 0.00 41.93 4.12
956 999 3.649986 GCGCACACAGTCACCACC 61.650 66.667 0.30 0.00 0.00 4.61
962 1005 0.908910 ACACAGTCACCACCTTCACA 59.091 50.000 0.00 0.00 0.00 3.58
1011 1054 0.179048 TACAGAGGATGGCAATGGCG 60.179 55.000 1.51 0.00 42.47 5.69
1012 1055 2.517875 AGAGGATGGCAATGGCGC 60.518 61.111 0.00 0.00 42.47 6.53
1055 1098 1.538876 CTTCCTCCACCACCTCCCA 60.539 63.158 0.00 0.00 0.00 4.37
1062 1105 1.341156 CCACCACCTCCCATCTCCTC 61.341 65.000 0.00 0.00 0.00 3.71
1065 1108 2.136878 CACCTCCCATCTCCTCCCG 61.137 68.421 0.00 0.00 0.00 5.14
1594 1637 1.227527 CAGTGCCAGGTGTTCGACA 60.228 57.895 0.00 0.00 0.00 4.35
1600 1643 0.319555 CCAGGTGTTCGACATCGTGT 60.320 55.000 0.54 0.00 40.80 4.49
2095 2138 0.606604 GCTGGAACCTTACGGTCTCA 59.393 55.000 0.00 0.00 44.73 3.27
2186 2229 1.970917 GCTCTGTTCGCGTCAATGGG 61.971 60.000 5.77 0.00 0.00 4.00
2217 2260 0.247185 GTGTTACACCGGGGATCGAA 59.753 55.000 12.96 0.00 42.43 3.71
2238 2281 0.833287 ACTATGGCTGCCTTGTCGAT 59.167 50.000 21.03 6.20 0.00 3.59
2581 2624 2.872245 GTGAGCTAGTGCAAGTGTTCAA 59.128 45.455 0.00 0.00 42.74 2.69
2588 2631 2.095853 AGTGCAAGTGTTCAACAGTTCG 59.904 45.455 7.70 5.59 39.57 3.95
2653 2700 5.240891 TGGAGATTCAGTTTGATGACACTC 58.759 41.667 0.00 0.00 34.04 3.51
2742 3094 4.034394 CCATGTGACATGTCAAATACTCCG 59.966 45.833 29.42 16.41 41.85 4.63
2754 3106 6.016943 TGTCAAATACTCCGGTTTTTCGAAAT 60.017 34.615 12.12 0.00 0.00 2.17
2756 3108 5.952526 AATACTCCGGTTTTTCGAAATGT 57.047 34.783 12.12 5.30 0.00 2.71
2757 3109 3.891056 ACTCCGGTTTTTCGAAATGTC 57.109 42.857 12.12 5.31 0.00 3.06
2763 3115 3.422603 CGGTTTTTCGAAATGTCGTCGAT 60.423 43.478 12.12 0.00 46.15 3.59
2766 3118 2.530832 TTCGAAATGTCGTCGATCGA 57.469 45.000 15.15 15.15 46.15 3.59
2798 3174 7.801547 AGATTCAGTTAATTGATGCAAAACG 57.198 32.000 1.06 0.00 0.00 3.60
2799 3175 7.592938 AGATTCAGTTAATTGATGCAAAACGA 58.407 30.769 1.06 0.00 0.00 3.85
2800 3176 7.752239 AGATTCAGTTAATTGATGCAAAACGAG 59.248 33.333 1.06 0.00 0.00 4.18
2820 3201 7.739498 ACGAGAAAAACCATTACAACATAGT 57.261 32.000 0.00 0.00 0.00 2.12
2900 3281 0.949105 AGCAAACGCCTACAACCTCG 60.949 55.000 0.00 0.00 0.00 4.63
2930 3311 8.665643 CATGGATTACAACATGGCAAAATAAT 57.334 30.769 0.00 0.00 40.50 1.28
3007 3389 2.816087 ACAATCCATCAAGCAGTCACAC 59.184 45.455 0.00 0.00 0.00 3.82
3011 3393 1.501169 CATCAAGCAGTCACACACGA 58.499 50.000 0.00 0.00 0.00 4.35
3049 3439 3.882982 GCTTTTGCTCAAGAGTGACTTC 58.117 45.455 0.00 0.00 43.35 3.01
3099 3489 4.037089 CGTTTTGTTACCAAAGGCTAAGGT 59.963 41.667 14.29 14.29 41.37 3.50
3103 3493 3.651904 TGTTACCAAAGGCTAAGGTGGTA 59.348 43.478 18.10 15.21 42.60 3.25
3104 3494 4.290196 TGTTACCAAAGGCTAAGGTGGTAT 59.710 41.667 18.10 0.00 44.13 2.73
3107 3497 4.851843 ACCAAAGGCTAAGGTGGTATTAC 58.148 43.478 9.72 0.00 42.60 1.89
3149 3539 8.687292 TGTGGATCTATCTACGTAATGTAAGT 57.313 34.615 0.00 0.00 40.68 2.24
3200 3617 1.237285 GCTCAATGCGGTGGTTGACT 61.237 55.000 0.00 0.00 31.55 3.41
3218 3635 1.746220 ACTATGTGCTCTGTCCGTCTC 59.254 52.381 0.00 0.00 0.00 3.36
3247 3665 8.607459 CGATAGTTATGCAAGAGAGAAACATTT 58.393 33.333 0.00 0.00 0.00 2.32
3278 3696 8.008332 TGGAGTAGTATCCTACATGAAACCATA 58.992 37.037 0.00 0.00 45.06 2.74
3289 3707 9.948964 CCTACATGAAACCATATATGAGATTCA 57.051 33.333 14.54 18.23 30.74 2.57
3309 3732 2.739913 CACCGGAAAAGAATAAGTGCGA 59.260 45.455 9.46 0.00 0.00 5.10
3469 3892 7.543172 AGCTATAAAAGTTAACGACGATGTTGA 59.457 33.333 0.00 0.00 33.32 3.18
3499 3922 9.995003 TTACTTGCAAATGAAAAATGGATTACT 57.005 25.926 0.00 0.00 0.00 2.24
3509 3932 8.893563 TGAAAAATGGATTACTGGTAAAGGAT 57.106 30.769 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 1.077265 CAGCCCCCAGTCACCAATT 59.923 57.895 0.00 0.00 0.00 2.32
167 177 9.082313 AGTTGACAAAAATGTTCAGATAATCCT 57.918 29.630 0.00 0.00 0.00 3.24
238 248 1.002430 CAAGACTGGTAAGCAGCTCCA 59.998 52.381 0.00 0.00 0.00 3.86
262 272 1.515521 GCGGACCTTCAAACCACCTG 61.516 60.000 0.00 0.00 0.00 4.00
395 420 2.100916 CCACAGTACCCTTCTCATACCG 59.899 54.545 0.00 0.00 0.00 4.02
512 537 6.040278 TGAGCTAAGATCTCATACTTCACCAG 59.960 42.308 0.00 0.00 35.81 4.00
715 744 8.549548 CAGATAATCAGACTCACAAAATAGCAG 58.450 37.037 0.00 0.00 0.00 4.24
730 759 8.927411 TCCTCATGTTGTAATCAGATAATCAGA 58.073 33.333 0.00 0.00 0.00 3.27
731 760 9.551734 TTCCTCATGTTGTAATCAGATAATCAG 57.448 33.333 0.00 0.00 0.00 2.90
732 761 9.330063 GTTCCTCATGTTGTAATCAGATAATCA 57.670 33.333 0.00 0.00 0.00 2.57
733 762 9.330063 TGTTCCTCATGTTGTAATCAGATAATC 57.670 33.333 0.00 0.00 0.00 1.75
734 763 9.857656 ATGTTCCTCATGTTGTAATCAGATAAT 57.142 29.630 0.00 0.00 35.19 1.28
735 764 9.112725 CATGTTCCTCATGTTGTAATCAGATAA 57.887 33.333 0.00 0.00 46.18 1.75
736 765 8.667076 CATGTTCCTCATGTTGTAATCAGATA 57.333 34.615 0.00 0.00 46.18 1.98
737 766 7.563888 CATGTTCCTCATGTTGTAATCAGAT 57.436 36.000 0.00 0.00 46.18 2.90
754 783 3.006752 TCAAATGGAAGGTTGCATGTTCC 59.993 43.478 13.01 13.01 39.28 3.62
758 787 3.663995 TGTCAAATGGAAGGTTGCATG 57.336 42.857 0.00 0.00 39.28 4.06
781 810 7.947890 AGTCAAATGGTAGGTAATCCTCAAAAA 59.052 33.333 0.00 0.00 43.94 1.94
782 811 7.466804 AGTCAAATGGTAGGTAATCCTCAAAA 58.533 34.615 0.00 0.00 43.94 2.44
783 812 7.027874 AGTCAAATGGTAGGTAATCCTCAAA 57.972 36.000 0.00 0.00 43.94 2.69
784 813 6.636454 AGTCAAATGGTAGGTAATCCTCAA 57.364 37.500 0.00 0.00 43.94 3.02
785 814 6.636454 AAGTCAAATGGTAGGTAATCCTCA 57.364 37.500 0.00 0.00 43.94 3.86
786 815 6.183360 GCAAAGTCAAATGGTAGGTAATCCTC 60.183 42.308 0.00 0.00 43.94 3.71
788 817 5.163550 GGCAAAGTCAAATGGTAGGTAATCC 60.164 44.000 0.00 0.00 0.00 3.01
789 818 5.417580 TGGCAAAGTCAAATGGTAGGTAATC 59.582 40.000 0.00 0.00 0.00 1.75
790 819 5.185056 GTGGCAAAGTCAAATGGTAGGTAAT 59.815 40.000 0.00 0.00 0.00 1.89
791 820 4.521256 GTGGCAAAGTCAAATGGTAGGTAA 59.479 41.667 0.00 0.00 0.00 2.85
792 821 4.076394 GTGGCAAAGTCAAATGGTAGGTA 58.924 43.478 0.00 0.00 0.00 3.08
793 822 2.890945 GTGGCAAAGTCAAATGGTAGGT 59.109 45.455 0.00 0.00 0.00 3.08
794 823 3.057315 CAGTGGCAAAGTCAAATGGTAGG 60.057 47.826 0.00 0.00 0.00 3.18
795 824 3.057315 CCAGTGGCAAAGTCAAATGGTAG 60.057 47.826 0.00 0.00 0.00 3.18
796 825 2.890311 CCAGTGGCAAAGTCAAATGGTA 59.110 45.455 0.00 0.00 0.00 3.25
797 826 1.688197 CCAGTGGCAAAGTCAAATGGT 59.312 47.619 0.00 0.00 0.00 3.55
798 827 1.962807 TCCAGTGGCAAAGTCAAATGG 59.037 47.619 3.51 0.00 30.49 3.16
799 828 2.608752 GCTCCAGTGGCAAAGTCAAATG 60.609 50.000 3.51 0.00 0.00 2.32
800 829 1.615392 GCTCCAGTGGCAAAGTCAAAT 59.385 47.619 3.51 0.00 0.00 2.32
801 830 1.032014 GCTCCAGTGGCAAAGTCAAA 58.968 50.000 3.51 0.00 0.00 2.69
802 831 0.823356 GGCTCCAGTGGCAAAGTCAA 60.823 55.000 3.51 0.00 0.00 3.18
803 832 1.228245 GGCTCCAGTGGCAAAGTCA 60.228 57.895 3.51 0.00 0.00 3.41
804 833 1.073897 AGGCTCCAGTGGCAAAGTC 59.926 57.895 3.51 0.00 34.73 3.01
805 834 1.228367 CAGGCTCCAGTGGCAAAGT 60.228 57.895 3.51 0.00 34.73 2.66
806 835 2.633509 GCAGGCTCCAGTGGCAAAG 61.634 63.158 3.51 0.00 34.73 2.77
807 836 2.598394 GCAGGCTCCAGTGGCAAA 60.598 61.111 3.51 0.00 34.73 3.68
811 840 4.421515 CTGGGCAGGCTCCAGTGG 62.422 72.222 12.89 1.40 44.97 4.00
833 862 5.921962 AATTAGGATTGGGCTTTTCACTC 57.078 39.130 0.00 0.00 0.00 3.51
834 863 5.046376 CCAAATTAGGATTGGGCTTTTCACT 60.046 40.000 0.00 0.00 42.95 3.41
835 864 5.178061 CCAAATTAGGATTGGGCTTTTCAC 58.822 41.667 0.00 0.00 42.95 3.18
836 865 5.419239 CCAAATTAGGATTGGGCTTTTCA 57.581 39.130 0.00 0.00 42.95 2.69
956 999 1.882623 GGGTTCTTTCTGGCTGTGAAG 59.117 52.381 0.00 0.00 0.00 3.02
962 1005 1.003233 GCTCGGGTTCTTTCTGGCT 60.003 57.895 0.00 0.00 0.00 4.75
1038 1081 0.914417 GATGGGAGGTGGTGGAGGAA 60.914 60.000 0.00 0.00 0.00 3.36
1055 1098 2.609920 GGGAGGACGGGAGGAGAT 59.390 66.667 0.00 0.00 0.00 2.75
1062 1105 2.448542 ATGGATGGGGAGGACGGG 60.449 66.667 0.00 0.00 0.00 5.28
1065 1108 1.055040 CAGAGATGGATGGGGAGGAC 58.945 60.000 0.00 0.00 0.00 3.85
1350 1393 2.202946 TCGACAAACAGCGCCACA 60.203 55.556 2.29 0.00 0.00 4.17
1594 1637 2.657757 CGCTGTTGCACGACACGAT 61.658 57.895 7.36 0.00 39.64 3.73
1977 2020 2.517875 GCCATGCCCTGCGATCTT 60.518 61.111 0.00 0.00 0.00 2.40
2186 2229 2.419159 GGTGTAACACCGTATTCCCTCC 60.419 54.545 0.00 0.00 44.95 4.30
2211 2254 1.202580 AGGCAGCCATAGTGTTCGATC 60.203 52.381 15.80 0.00 0.00 3.69
2217 2260 0.391661 CGACAAGGCAGCCATAGTGT 60.392 55.000 15.80 11.88 0.00 3.55
2380 2423 4.115199 GCATTCCACGGCTCCCCT 62.115 66.667 0.00 0.00 0.00 4.79
2517 2560 0.752658 CCTCGATCATGCTACACCCA 59.247 55.000 0.00 0.00 0.00 4.51
2570 2613 2.286418 CCTCGAACTGTTGAACACTTGC 60.286 50.000 0.00 0.00 0.00 4.01
2581 2624 5.126545 TGCTATGTATTGTACCTCGAACTGT 59.873 40.000 0.00 0.00 0.00 3.55
2588 2631 5.116180 TGCTGTTGCTATGTATTGTACCTC 58.884 41.667 0.00 0.00 40.48 3.85
2653 2700 5.156355 CCCAAACATGAGAAAAATCTGTCG 58.844 41.667 0.00 0.00 0.00 4.35
2773 3125 8.081633 TCGTTTTGCATCAATTAACTGAATCTT 58.918 29.630 0.00 0.00 0.00 2.40
2774 3126 7.592938 TCGTTTTGCATCAATTAACTGAATCT 58.407 30.769 0.00 0.00 0.00 2.40
2775 3127 7.750458 TCTCGTTTTGCATCAATTAACTGAATC 59.250 33.333 0.00 0.00 0.00 2.52
2798 3174 8.564574 TGTGACTATGTTGTAATGGTTTTTCTC 58.435 33.333 0.00 0.00 0.00 2.87
2799 3175 8.458573 TGTGACTATGTTGTAATGGTTTTTCT 57.541 30.769 0.00 0.00 0.00 2.52
2800 3176 9.128107 CATGTGACTATGTTGTAATGGTTTTTC 57.872 33.333 0.00 0.00 0.00 2.29
2820 3201 4.631131 CTTTGTGAGTAGTCCACATGTGA 58.369 43.478 27.46 10.46 43.17 3.58
2837 3218 3.698040 GGTGATGGAGATTCATGCTTTGT 59.302 43.478 0.00 0.00 0.00 2.83
2900 3281 1.688197 CATGTTGTAATCCATGGGCCC 59.312 52.381 17.59 17.59 35.82 5.80
2930 3311 5.588958 TTGTTGATGTGTTTTGATGGTGA 57.411 34.783 0.00 0.00 0.00 4.02
3007 3389 0.034059 AGAAGAGTGGGCAAGTCGTG 59.966 55.000 0.00 0.00 33.01 4.35
3011 3393 0.475906 AGCAAGAAGAGTGGGCAAGT 59.524 50.000 0.00 0.00 0.00 3.16
3049 3439 7.895759 TCTCATCAAAATTTAAACTTCCCCAG 58.104 34.615 0.00 0.00 0.00 4.45
3099 3489 3.766068 TTTGGTGGACACGTAATACCA 57.234 42.857 8.51 8.51 39.49 3.25
3103 3493 5.123186 CACATGTATTTGGTGGACACGTAAT 59.877 40.000 0.00 1.97 0.00 1.89
3104 3494 4.452795 CACATGTATTTGGTGGACACGTAA 59.547 41.667 0.00 0.00 0.00 3.18
3107 3497 3.469899 CACATGTATTTGGTGGACACG 57.530 47.619 0.00 0.00 0.00 4.49
3171 3588 2.943033 ACCGCATTGAGCCTATTTGTAC 59.057 45.455 0.00 0.00 41.38 2.90
3200 3617 1.834188 TGAGACGGACAGAGCACATA 58.166 50.000 0.00 0.00 0.00 2.29
3218 3635 7.063426 TGTTTCTCTCTTGCATAACTATCGTTG 59.937 37.037 0.00 0.00 34.59 4.10
3278 3696 9.277783 CTTATTCTTTTCCGGTGAATCTCATAT 57.722 33.333 0.00 0.00 33.24 1.78
3289 3707 3.048337 TCGCACTTATTCTTTTCCGGT 57.952 42.857 0.00 0.00 0.00 5.28
3358 3781 5.828299 TCTTAAGGCCCATTGAATAAACG 57.172 39.130 0.00 0.00 0.00 3.60
3367 3790 5.583932 AGTCTTTCATTCTTAAGGCCCATT 58.416 37.500 0.00 0.00 0.00 3.16
3413 3836 9.868277 CCATAGCCAACTTTTAAATTATCAACA 57.132 29.630 0.00 0.00 0.00 3.33
3469 3892 7.222872 TCCATTTTTCATTTGCAAGTAATGGT 58.777 30.769 23.09 0.41 40.83 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.