Multiple sequence alignment - TraesCS5D01G387600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G387600 chr5D 100.000 7314 0 0 1 7314 457516757 457524070 0.000000e+00 13507.0
1 TraesCS5D01G387600 chr5D 90.323 186 18 0 6103 6288 63514065 63514250 2.040000e-60 244.0
2 TraesCS5D01G387600 chr5D 86.885 61 8 0 5805 5865 63513724 63513784 1.320000e-07 69.4
3 TraesCS5D01G387600 chr5B 92.490 1771 72 32 4828 6562 559461071 559462816 0.000000e+00 2477.0
4 TraesCS5D01G387600 chr5B 89.983 1777 80 30 740 2465 559456715 559458444 0.000000e+00 2206.0
5 TraesCS5D01G387600 chr5B 90.969 1362 67 25 3409 4721 559459618 559460972 0.000000e+00 1783.0
6 TraesCS5D01G387600 chr5B 93.360 497 22 7 2803 3293 559458894 559459385 0.000000e+00 725.0
7 TraesCS5D01G387600 chr5B 90.286 350 25 8 2459 2805 559458522 559458865 4.020000e-122 449.0
8 TraesCS5D01G387600 chr5B 89.552 335 27 7 3709 4040 143730127 143730456 1.130000e-112 418.0
9 TraesCS5D01G387600 chr5B 92.885 253 14 2 1 253 559455738 559455986 1.500000e-96 364.0
10 TraesCS5D01G387600 chr5B 85.876 354 32 9 6745 7087 559465485 559465831 1.940000e-95 361.0
11 TraesCS5D01G387600 chr5B 89.947 189 19 0 6103 6291 67035213 67035025 2.040000e-60 244.0
12 TraesCS5D01G387600 chr5B 81.230 309 42 10 275 575 559456229 559456529 1.230000e-57 235.0
13 TraesCS5D01G387600 chr5B 80.567 247 25 13 1064 1300 67039118 67038885 1.260000e-37 169.0
14 TraesCS5D01G387600 chr5B 95.161 62 3 0 6565 6626 559462843 559462904 1.680000e-16 99.0
15 TraesCS5D01G387600 chr5B 88.525 61 7 0 5808 5868 67035539 67035479 2.830000e-09 75.0
16 TraesCS5D01G387600 chr5A 88.185 1989 106 45 3412 5329 575325778 575327708 0.000000e+00 2252.0
17 TraesCS5D01G387600 chr5A 88.189 1888 94 45 5402 7232 575327735 575329550 0.000000e+00 2132.0
18 TraesCS5D01G387600 chr5A 83.837 1788 158 69 1644 3347 575323751 575325491 0.000000e+00 1580.0
19 TraesCS5D01G387600 chr5A 86.691 1097 64 28 570 1610 575322684 575323754 0.000000e+00 1142.0
20 TraesCS5D01G387600 chr5A 87.586 435 47 5 1 435 575322075 575322502 1.420000e-136 497.0
21 TraesCS5D01G387600 chr5A 88.614 202 23 0 6103 6304 52858690 52858891 5.670000e-61 246.0
22 TraesCS5D01G387600 chr5A 80.972 247 24 13 1064 1300 52854743 52854976 2.710000e-39 174.0
23 TraesCS5D01G387600 chr2B 90.448 335 27 4 3709 4040 633579060 633578728 3.130000e-118 436.0
24 TraesCS5D01G387600 chr6D 88.220 382 20 11 3546 3911 417345850 417345478 4.050000e-117 433.0
25 TraesCS5D01G387600 chr3B 90.149 335 26 6 3709 4040 706220332 706220002 5.240000e-116 429.0
26 TraesCS5D01G387600 chr3B 89.851 335 27 6 3709 4040 47697777 47697447 2.440000e-114 424.0
27 TraesCS5D01G387600 chr3B 89.851 335 27 6 3709 4040 47702914 47702584 2.440000e-114 424.0
28 TraesCS5D01G387600 chr3B 89.521 334 29 5 3709 4040 47770773 47770444 1.130000e-112 418.0
29 TraesCS5D01G387600 chr3B 89.552 335 28 6 3709 4040 47832093 47831763 1.130000e-112 418.0
30 TraesCS5D01G387600 chr3B 89.254 335 29 6 3709 4040 48102758 48102428 5.280000e-111 412.0
31 TraesCS5D01G387600 chr6B 96.023 176 6 1 3409 3583 49269627 49269452 1.200000e-72 285.0
32 TraesCS5D01G387600 chr1B 93.860 114 6 1 3409 3521 538496272 538496159 3.510000e-38 171.0
33 TraesCS5D01G387600 chr1A 85.870 92 13 0 2805 2896 366132195 366132286 1.680000e-16 99.0
34 TraesCS5D01G387600 chr2D 86.585 82 11 0 2815 2896 539436592 539436511 2.810000e-14 91.6
35 TraesCS5D01G387600 chr3A 100.000 28 0 0 5340 5367 706060381 706060354 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G387600 chr5D 457516757 457524070 7313 False 13507.000000 13507 100.000000 1 7314 1 chr5D.!!$F1 7313
1 TraesCS5D01G387600 chr5B 559455738 559465831 10093 False 966.555556 2477 90.248889 1 7087 9 chr5B.!!$F2 7086
2 TraesCS5D01G387600 chr5A 575322075 575329550 7475 False 1520.600000 2252 86.897600 1 7232 5 chr5A.!!$F2 7231
3 TraesCS5D01G387600 chr5A 52854743 52858891 4148 False 210.000000 246 84.793000 1064 6304 2 chr5A.!!$F1 5240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 675 0.179051 TTAACACCTTGGCGAACGGT 60.179 50.0 0.00 0.0 0.00 4.83 F
1358 1785 0.033011 TCTCCTCTCTCTTTCCGGGG 60.033 60.0 0.00 0.0 0.00 5.73 F
1639 2076 0.316841 TCCAAACATTTTCTGCGGGC 59.683 50.0 0.00 0.0 0.00 6.13 F
3247 4143 0.039618 ACGGCCATGTCCTTTTCCAT 59.960 50.0 2.24 0.0 0.00 3.41 F
3361 4265 0.462047 GCACCGGGTAGTTCATGGAG 60.462 60.0 6.32 0.0 0.00 3.86 F
4645 6094 0.466189 ACACAGTGGTTTCTGCTGGG 60.466 55.0 5.31 0.0 39.38 4.45 F
4700 6156 0.535797 GAGAGTTAAGGACCCACCCG 59.464 60.0 0.00 0.0 40.05 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 2072 0.108329 CCACAGTAGTAACCAGCCCG 60.108 60.000 0.00 0.0 0.00 6.13 R
2602 3277 0.172803 GTAGAGCGCGGAAAAGAGGA 59.827 55.000 8.83 0.0 0.00 3.71 R
3414 4585 0.036732 TGACAGATGGGCAACAGGAC 59.963 55.000 0.00 0.0 39.74 3.85 R
4689 6144 0.481128 AAATTTCACGGGTGGGTCCT 59.519 50.000 0.00 0.0 36.25 3.85 R
5107 6687 1.079127 ATCGTCCTTGCCGGAACTG 60.079 57.895 5.05 0.0 45.32 3.16 R
5899 7583 0.034477 AAGGCCCAGAATTACCACCG 60.034 55.000 0.00 0.0 0.00 4.94 R
6494 8247 0.036875 ACAAGTAACAGCAGGAGCCC 59.963 55.000 0.00 0.0 43.56 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.136071 GTGAAACTATAAGTGCGCCATAATG 58.864 40.000 4.18 0.00 0.00 1.90
46 47 9.567848 CGCCATAATGGTTATATATTTCCAAAC 57.432 33.333 11.00 1.02 40.46 2.93
183 184 4.984161 TCGGTTTCCTACTAACGACAAAAG 59.016 41.667 0.00 0.00 0.00 2.27
187 188 7.307573 CGGTTTCCTACTAACGACAAAAGAAAT 60.308 37.037 0.00 0.00 0.00 2.17
188 189 8.347771 GGTTTCCTACTAACGACAAAAGAAATT 58.652 33.333 0.00 0.00 0.00 1.82
195 196 8.845942 ACTAACGACAAAAGAAATTAAACACC 57.154 30.769 0.00 0.00 0.00 4.16
201 202 4.882842 AAAGAAATTAAACACCGCCCAT 57.117 36.364 0.00 0.00 0.00 4.00
260 261 3.264897 GCAGCCTCGCCATACACG 61.265 66.667 0.00 0.00 0.00 4.49
263 264 3.264897 GCCTCGCCATACACGCAG 61.265 66.667 0.00 0.00 0.00 5.18
336 558 0.470341 TGTGGACGGTGGTTCATTCA 59.530 50.000 0.00 0.00 33.24 2.57
338 560 1.265905 GTGGACGGTGGTTCATTCAAC 59.734 52.381 0.00 0.00 33.24 3.18
407 629 7.497595 AGGCTAGACAAATGTGATTACGATTA 58.502 34.615 0.00 0.00 0.00 1.75
408 630 8.150945 AGGCTAGACAAATGTGATTACGATTAT 58.849 33.333 0.00 0.00 0.00 1.28
415 637 5.829233 ATGTGATTACGATTATGTCTGCG 57.171 39.130 0.00 0.00 0.00 5.18
418 640 4.503007 GTGATTACGATTATGTCTGCGTGT 59.497 41.667 0.00 0.00 37.56 4.49
435 657 0.981183 TGTCGACCTAGGGCACAATT 59.019 50.000 16.92 0.00 0.00 2.32
438 660 2.934553 GTCGACCTAGGGCACAATTAAC 59.065 50.000 16.92 0.00 0.00 2.01
440 662 2.676342 CGACCTAGGGCACAATTAACAC 59.324 50.000 16.92 0.00 0.00 3.32
442 664 2.647802 ACCTAGGGCACAATTAACACCT 59.352 45.455 14.81 0.00 0.00 4.00
443 665 3.075432 ACCTAGGGCACAATTAACACCTT 59.925 43.478 14.81 0.00 0.00 3.50
444 666 3.443681 CCTAGGGCACAATTAACACCTTG 59.556 47.826 0.00 0.00 0.00 3.61
445 667 2.247358 AGGGCACAATTAACACCTTGG 58.753 47.619 0.00 0.00 0.00 3.61
447 669 1.668628 GGCACAATTAACACCTTGGCG 60.669 52.381 0.00 0.00 0.00 5.69
448 670 1.268352 GCACAATTAACACCTTGGCGA 59.732 47.619 0.00 0.00 0.00 5.54
449 671 2.287909 GCACAATTAACACCTTGGCGAA 60.288 45.455 0.00 0.00 0.00 4.70
450 672 3.305110 CACAATTAACACCTTGGCGAAC 58.695 45.455 0.00 0.00 0.00 3.95
451 673 2.031508 ACAATTAACACCTTGGCGAACG 60.032 45.455 0.00 0.00 0.00 3.95
453 675 0.179051 TTAACACCTTGGCGAACGGT 60.179 50.000 0.00 0.00 0.00 4.83
454 676 0.179051 TAACACCTTGGCGAACGGTT 60.179 50.000 0.00 0.00 0.00 4.44
456 678 1.890041 CACCTTGGCGAACGGTTGA 60.890 57.895 0.00 0.00 0.00 3.18
462 684 4.117372 GCGAACGGTTGAGTCGCG 62.117 66.667 8.90 0.00 39.94 5.87
463 685 2.728383 CGAACGGTTGAGTCGCGT 60.728 61.111 5.77 0.00 0.00 6.01
464 686 2.844146 GAACGGTTGAGTCGCGTG 59.156 61.111 5.77 0.00 0.00 5.34
466 688 3.141522 AACGGTTGAGTCGCGTGGA 62.142 57.895 5.77 0.00 0.00 4.02
476 728 0.233848 GTCGCGTGGACGTTTTGATT 59.766 50.000 5.77 0.00 42.22 2.57
517 769 1.392168 CGTGTGCGATCCAACGTAAAT 59.608 47.619 0.00 0.00 41.33 1.40
523 775 2.222953 GCGATCCAACGTAAATGTGACC 60.223 50.000 0.00 0.00 35.59 4.02
555 807 1.115930 AGCACAAGAGTCGGGACACT 61.116 55.000 1.17 0.00 33.70 3.55
557 809 1.402984 GCACAAGAGTCGGGACACTAG 60.403 57.143 1.17 0.00 32.04 2.57
562 814 4.200874 CAAGAGTCGGGACACTAGTAGAT 58.799 47.826 3.59 0.00 32.04 1.98
618 940 5.920840 CCAGTTACTACCATATGTGTCATCG 59.079 44.000 1.24 0.00 0.00 3.84
620 942 7.255346 CCAGTTACTACCATATGTGTCATCGTA 60.255 40.741 1.24 0.00 0.00 3.43
625 947 5.854010 ACCATATGTGTCATCGTAGAAGT 57.146 39.130 1.24 0.00 43.58 3.01
652 986 1.574702 CGGCGGTGGAAAAACCTCTC 61.575 60.000 0.00 0.00 38.14 3.20
661 995 1.782028 AAAAACCTCTCGCCGTGCAC 61.782 55.000 6.82 6.82 0.00 4.57
662 996 2.933878 AAAACCTCTCGCCGTGCACA 62.934 55.000 18.64 0.00 0.00 4.57
663 997 2.933878 AAACCTCTCGCCGTGCACAA 62.934 55.000 18.64 0.00 0.00 3.33
664 998 3.414700 CCTCTCGCCGTGCACAAC 61.415 66.667 18.64 6.85 0.00 3.32
665 999 3.414700 CTCTCGCCGTGCACAACC 61.415 66.667 18.64 2.90 0.00 3.77
696 1030 1.333702 GCGATCAACAAGTGCACGAAA 60.334 47.619 12.01 0.00 0.00 3.46
721 1055 3.011513 CGTAGCCACGTCACAGTAC 57.988 57.895 0.00 0.00 43.31 2.73
722 1056 0.239082 CGTAGCCACGTCACAGTACA 59.761 55.000 0.00 0.00 43.31 2.90
723 1057 1.335233 CGTAGCCACGTCACAGTACAA 60.335 52.381 0.00 0.00 43.31 2.41
724 1058 2.325761 GTAGCCACGTCACAGTACAAG 58.674 52.381 0.00 0.00 0.00 3.16
725 1059 0.750850 AGCCACGTCACAGTACAAGT 59.249 50.000 0.00 0.00 0.00 3.16
726 1060 1.138266 AGCCACGTCACAGTACAAGTT 59.862 47.619 0.00 0.00 0.00 2.66
727 1061 1.937899 GCCACGTCACAGTACAAGTTT 59.062 47.619 0.00 0.00 0.00 2.66
728 1062 2.353579 GCCACGTCACAGTACAAGTTTT 59.646 45.455 0.00 0.00 0.00 2.43
729 1063 3.556775 GCCACGTCACAGTACAAGTTTTA 59.443 43.478 0.00 0.00 0.00 1.52
730 1064 4.551410 GCCACGTCACAGTACAAGTTTTAC 60.551 45.833 0.00 0.00 0.00 2.01
731 1065 4.025480 CCACGTCACAGTACAAGTTTTACC 60.025 45.833 0.00 0.00 0.00 2.85
732 1066 4.807304 CACGTCACAGTACAAGTTTTACCT 59.193 41.667 0.00 0.00 0.00 3.08
733 1067 5.292589 CACGTCACAGTACAAGTTTTACCTT 59.707 40.000 0.00 0.00 0.00 3.50
734 1068 5.876460 ACGTCACAGTACAAGTTTTACCTTT 59.124 36.000 0.00 0.00 0.00 3.11
735 1069 6.372381 ACGTCACAGTACAAGTTTTACCTTTT 59.628 34.615 0.00 0.00 0.00 2.27
736 1070 7.548780 ACGTCACAGTACAAGTTTTACCTTTTA 59.451 33.333 0.00 0.00 0.00 1.52
737 1071 7.847564 CGTCACAGTACAAGTTTTACCTTTTAC 59.152 37.037 0.00 0.00 30.99 2.01
738 1072 8.124823 GTCACAGTACAAGTTTTACCTTTTACC 58.875 37.037 0.00 0.00 31.11 2.85
744 1106 5.105432 ACAAGTTTTACCTTTTACCCGCAAA 60.105 36.000 0.00 0.00 0.00 3.68
749 1111 6.705863 TTTACCTTTTACCCGCAAAAACTA 57.294 33.333 0.00 0.00 0.00 2.24
835 1200 3.295973 GGCATCTATAAAACCAGCCCAA 58.704 45.455 0.00 0.00 34.71 4.12
959 1357 4.803426 CACTCCACCGCTCCGCTC 62.803 72.222 0.00 0.00 0.00 5.03
1358 1785 0.033011 TCTCCTCTCTCTTTCCGGGG 60.033 60.000 0.00 0.00 0.00 5.73
1366 1793 3.075148 CTCTCTTTCCGGGGAAAAGAAC 58.925 50.000 15.40 0.00 42.61 3.01
1367 1794 1.804748 CTCTTTCCGGGGAAAAGAACG 59.195 52.381 15.40 4.33 42.61 3.95
1368 1795 1.141455 TCTTTCCGGGGAAAAGAACGT 59.859 47.619 12.97 0.00 42.61 3.99
1473 1906 1.572941 GGCGAGTTCCGTTTTGTCC 59.427 57.895 0.00 0.00 41.15 4.02
1507 1940 2.799126 TCTGACTGACCTCTCTCTCC 57.201 55.000 0.00 0.00 0.00 3.71
1590 2027 1.153549 GGGATTTCGACGCTCAGCT 60.154 57.895 0.00 0.00 0.00 4.24
1610 2047 1.068402 TGCGTTCGACCGAGAATTACA 60.068 47.619 6.53 0.00 32.25 2.41
1612 2049 2.027688 GCGTTCGACCGAGAATTACAAG 59.972 50.000 6.53 0.00 32.25 3.16
1613 2050 3.240069 CGTTCGACCGAGAATTACAAGT 58.760 45.455 0.00 0.00 32.25 3.16
1614 2051 3.671928 CGTTCGACCGAGAATTACAAGTT 59.328 43.478 0.00 0.00 32.25 2.66
1616 2053 2.991190 TCGACCGAGAATTACAAGTTGC 59.009 45.455 1.81 0.00 0.00 4.17
1617 2054 2.993899 CGACCGAGAATTACAAGTTGCT 59.006 45.455 1.81 0.00 0.00 3.91
1618 2055 4.082625 TCGACCGAGAATTACAAGTTGCTA 60.083 41.667 1.81 0.00 0.00 3.49
1619 2056 4.624024 CGACCGAGAATTACAAGTTGCTAA 59.376 41.667 1.81 1.90 0.00 3.09
1620 2057 5.291128 CGACCGAGAATTACAAGTTGCTAAT 59.709 40.000 1.81 4.14 0.00 1.73
1621 2058 6.508088 CGACCGAGAATTACAAGTTGCTAATC 60.508 42.308 1.81 0.00 0.00 1.75
1622 2059 5.585047 ACCGAGAATTACAAGTTGCTAATCC 59.415 40.000 1.81 0.00 0.00 3.01
1623 2060 5.584649 CCGAGAATTACAAGTTGCTAATCCA 59.415 40.000 1.81 0.00 0.00 3.41
1624 2061 6.093495 CCGAGAATTACAAGTTGCTAATCCAA 59.907 38.462 1.81 0.00 0.00 3.53
1625 2062 7.361713 CCGAGAATTACAAGTTGCTAATCCAAA 60.362 37.037 1.81 0.00 0.00 3.28
1626 2063 7.481798 CGAGAATTACAAGTTGCTAATCCAAAC 59.518 37.037 1.81 0.00 0.00 2.93
1627 2064 8.177119 AGAATTACAAGTTGCTAATCCAAACA 57.823 30.769 1.81 0.00 0.00 2.83
1628 2065 8.806146 AGAATTACAAGTTGCTAATCCAAACAT 58.194 29.630 1.81 0.00 0.00 2.71
1629 2066 9.423061 GAATTACAAGTTGCTAATCCAAACATT 57.577 29.630 1.81 0.00 0.00 2.71
1630 2067 9.777297 AATTACAAGTTGCTAATCCAAACATTT 57.223 25.926 1.81 0.00 0.00 2.32
1631 2068 9.777297 ATTACAAGTTGCTAATCCAAACATTTT 57.223 25.926 1.81 0.00 0.00 1.82
1632 2069 7.713764 ACAAGTTGCTAATCCAAACATTTTC 57.286 32.000 1.81 0.00 0.00 2.29
1633 2070 7.500141 ACAAGTTGCTAATCCAAACATTTTCT 58.500 30.769 1.81 0.00 0.00 2.52
1634 2071 7.439056 ACAAGTTGCTAATCCAAACATTTTCTG 59.561 33.333 1.81 0.00 0.00 3.02
1635 2072 5.928264 AGTTGCTAATCCAAACATTTTCTGC 59.072 36.000 0.00 0.00 0.00 4.26
1636 2073 4.484236 TGCTAATCCAAACATTTTCTGCG 58.516 39.130 0.00 0.00 0.00 5.18
1637 2074 3.859386 GCTAATCCAAACATTTTCTGCGG 59.141 43.478 0.00 0.00 0.00 5.69
1638 2075 3.317603 AATCCAAACATTTTCTGCGGG 57.682 42.857 0.00 0.00 0.00 6.13
1639 2076 0.316841 TCCAAACATTTTCTGCGGGC 59.683 50.000 0.00 0.00 0.00 6.13
1666 2103 4.762956 ACTACTGTGGAGTACGTTTCTC 57.237 45.455 0.00 2.27 33.21 2.87
1717 2157 3.868077 GTGATTTCTGTCAGAGGATTCCG 59.132 47.826 2.12 0.00 0.00 4.30
1795 2235 1.874345 GACCTTTCTCACCGCTCCGA 61.874 60.000 0.00 0.00 0.00 4.55
1810 2251 1.065928 CCGATTCCTTCTCCCGTCG 59.934 63.158 0.00 0.00 0.00 5.12
1834 2277 7.432545 TCGAATTCAACATCTATTCTCTTCGTC 59.567 37.037 6.22 0.00 34.86 4.20
1984 2524 1.620822 AGTGGTCAGGGCAACAATTC 58.379 50.000 0.00 0.00 39.74 2.17
1995 2535 4.037208 AGGGCAACAATTCATCATCGATTC 59.963 41.667 0.00 0.00 39.74 2.52
2118 2672 4.022068 TGGAACTGAACCTTGATGCAAATC 60.022 41.667 0.00 0.00 0.00 2.17
2244 2798 1.590238 GATTGATGACTCGCAGGTTCG 59.410 52.381 0.00 0.00 0.00 3.95
2263 2817 0.538287 GCTTCCTGTCACCTTTGCCT 60.538 55.000 0.00 0.00 0.00 4.75
2297 2866 2.766828 ACTTTCTAGGCGCCTGTTCTAT 59.233 45.455 38.98 17.27 0.00 1.98
2382 2970 2.865492 CCTTCTTCAGGCTTGCCTC 58.135 57.895 11.72 0.00 35.13 4.70
2415 3003 6.879458 ACTAATTGTGCCAAGTTTCTAGTAGG 59.121 38.462 0.00 0.00 0.00 3.18
2418 3006 3.260884 TGTGCCAAGTTTCTAGTAGGAGG 59.739 47.826 0.00 0.00 0.00 4.30
2425 3016 4.779696 AGTTTCTAGTAGGAGGAGTACCG 58.220 47.826 0.00 0.00 41.83 4.02
2487 3162 0.955919 ACAAAGACCAAGGCGCTAGC 60.956 55.000 7.64 4.06 44.18 3.42
2552 3227 5.625311 GCAAGAAACCAAAAGAGATTGTACG 59.375 40.000 0.00 0.00 0.00 3.67
2602 3277 2.295070 GTGTGCTTGTTTACCGGGAAAT 59.705 45.455 16.61 0.00 0.00 2.17
2685 3362 4.911514 TTTCCGCAGCTTTCTTTTTACT 57.088 36.364 0.00 0.00 0.00 2.24
2686 3363 6.380095 TTTTCCGCAGCTTTCTTTTTACTA 57.620 33.333 0.00 0.00 0.00 1.82
2687 3364 6.569179 TTTCCGCAGCTTTCTTTTTACTAT 57.431 33.333 0.00 0.00 0.00 2.12
2713 3390 2.571653 AGTGCCATTGTCCTTGCTAGTA 59.428 45.455 0.00 0.00 0.00 1.82
2714 3391 2.939103 GTGCCATTGTCCTTGCTAGTAG 59.061 50.000 0.00 0.00 0.00 2.57
2789 3466 3.857093 GTGGCTAAAATATGGTTTGCACG 59.143 43.478 0.00 0.00 0.00 5.34
2805 3482 2.420372 TGCACGCTGTTTTTGTTCAGTA 59.580 40.909 0.00 0.00 34.57 2.74
2811 3512 4.150980 CGCTGTTTTTGTTCAGTATACCGA 59.849 41.667 0.00 0.00 34.57 4.69
2813 3514 5.579384 TGTTTTTGTTCAGTATACCGACG 57.421 39.130 0.00 0.00 0.00 5.12
2824 3532 6.623486 TCAGTATACCGACGAAATTTCTCAA 58.377 36.000 15.92 2.90 0.00 3.02
2884 3592 1.068472 ACTCTCACACTAGAAACCGCG 60.068 52.381 0.00 0.00 0.00 6.46
2889 3597 0.669625 ACACTAGAAACCGCGGCTTC 60.670 55.000 29.41 29.41 0.00 3.86
2910 3618 5.518848 TCGTTGTGGTAGAAGTAGAACAA 57.481 39.130 0.00 0.00 0.00 2.83
3012 3897 2.035312 CCAGCCTTGCAGCCTTCT 59.965 61.111 0.00 0.00 0.00 2.85
3184 4075 3.378742 CGCTTTCTCTCTCCTTGCTAGTA 59.621 47.826 0.00 0.00 0.00 1.82
3185 4076 4.497340 CGCTTTCTCTCTCCTTGCTAGTAG 60.497 50.000 0.00 0.00 0.00 2.57
3245 4141 1.595093 CCACGGCCATGTCCTTTTCC 61.595 60.000 2.24 0.00 0.00 3.13
3246 4142 0.893270 CACGGCCATGTCCTTTTCCA 60.893 55.000 2.24 0.00 0.00 3.53
3247 4143 0.039618 ACGGCCATGTCCTTTTCCAT 59.960 50.000 2.24 0.00 0.00 3.41
3351 4255 4.015406 CAGCACCAGCACCGGGTA 62.015 66.667 6.32 0.00 45.49 3.69
3360 4264 0.907704 AGCACCGGGTAGTTCATGGA 60.908 55.000 6.32 0.00 0.00 3.41
3361 4265 0.462047 GCACCGGGTAGTTCATGGAG 60.462 60.000 6.32 0.00 0.00 3.86
3362 4266 0.462047 CACCGGGTAGTTCATGGAGC 60.462 60.000 6.32 0.00 0.00 4.70
3363 4267 0.617820 ACCGGGTAGTTCATGGAGCT 60.618 55.000 6.32 0.00 0.00 4.09
3364 4268 0.541863 CCGGGTAGTTCATGGAGCTT 59.458 55.000 0.00 0.00 0.00 3.74
3403 4339 7.754924 CACCACATTTTACAGATTTACATGGAC 59.245 37.037 0.00 0.00 0.00 4.02
3404 4340 7.093945 ACCACATTTTACAGATTTACATGGACC 60.094 37.037 0.00 0.00 0.00 4.46
3405 4341 7.093988 CCACATTTTACAGATTTACATGGACCA 60.094 37.037 0.00 0.00 0.00 4.02
3414 4585 4.771114 TTTACATGGACCATCTGTAGGG 57.229 45.455 3.21 0.00 0.00 3.53
3495 4667 6.454795 TGTTCTTCATGCCTTGTTTTTATCC 58.545 36.000 0.00 0.00 0.00 2.59
3634 4812 3.905784 CGGGAAACGTTCTTGTACTACT 58.094 45.455 0.00 0.00 37.93 2.57
3635 4813 5.046910 CGGGAAACGTTCTTGTACTACTA 57.953 43.478 0.00 0.00 37.93 1.82
3636 4814 5.644644 CGGGAAACGTTCTTGTACTACTAT 58.355 41.667 0.00 0.00 37.93 2.12
3640 4842 7.912773 GGGAAACGTTCTTGTACTACTATCTAC 59.087 40.741 0.00 0.00 0.00 2.59
3660 4862 1.974236 CAAATTACTGTTGGGGGCCAA 59.026 47.619 4.39 0.00 41.69 4.52
3675 4877 1.339631 GGCCAACACAGTATGGTGCTA 60.340 52.381 0.00 0.00 45.57 3.49
3756 4958 2.665165 ACATTGGTTTGTCTGGCTTGA 58.335 42.857 0.00 0.00 0.00 3.02
3768 4970 4.570772 TGTCTGGCTTGACGAATTATTAGC 59.429 41.667 0.00 0.00 39.64 3.09
3907 5306 6.146184 GGGATTAAGTGCAAAGAAGAAAAAGC 59.854 38.462 0.00 0.00 0.00 3.51
3954 5354 0.622665 CCAGCCCCAAGAGAGACAAT 59.377 55.000 0.00 0.00 0.00 2.71
4281 5692 2.682856 CCCGTTTCTCTCTCTCTCTCTG 59.317 54.545 0.00 0.00 0.00 3.35
4526 5963 7.500992 TGTGTCCATTTATCCTCTGAGATTAC 58.499 38.462 6.17 0.00 0.00 1.89
4559 6008 3.812156 ACTGTTGTATGCGCCAGTATA 57.188 42.857 12.20 0.00 36.44 1.47
4587 6036 3.867493 CGCTCTTGCTCAATTATCAGACA 59.133 43.478 0.00 0.00 36.97 3.41
4588 6037 4.025896 CGCTCTTGCTCAATTATCAGACAG 60.026 45.833 0.00 0.00 36.97 3.51
4589 6038 5.114780 GCTCTTGCTCAATTATCAGACAGA 58.885 41.667 0.00 0.00 36.03 3.41
4590 6039 5.006552 GCTCTTGCTCAATTATCAGACAGAC 59.993 44.000 0.00 0.00 36.03 3.51
4645 6094 0.466189 ACACAGTGGTTTCTGCTGGG 60.466 55.000 5.31 0.00 39.38 4.45
4676 6131 8.959705 AGCCTTGAATAATTGTTAGTAGTACC 57.040 34.615 0.00 0.00 0.00 3.34
4689 6144 9.524496 TTGTTAGTAGTACCATGAGAGAGTTAA 57.476 33.333 0.00 0.00 0.00 2.01
4700 6156 0.535797 GAGAGTTAAGGACCCACCCG 59.464 60.000 0.00 0.00 40.05 5.28
4797 6267 7.254932 GGAGCAAATATTCCTAGCAGTTTAGTG 60.255 40.741 0.00 0.00 0.00 2.74
4822 6304 7.860373 TGTGTTTGATCTACAGTATTGCAAAAC 59.140 33.333 1.71 0.00 0.00 2.43
4881 6363 4.218417 TCCTTTGGAATGCTCTTTGCTAAC 59.782 41.667 0.00 0.00 43.37 2.34
4897 6380 4.973168 TGCTAACTGGACAATCTCTTGTT 58.027 39.130 0.00 0.00 45.57 2.83
4902 6385 7.803659 GCTAACTGGACAATCTCTTGTTAAAAC 59.196 37.037 0.00 0.00 45.57 2.43
4904 6387 8.974060 AACTGGACAATCTCTTGTTAAAACTA 57.026 30.769 0.00 0.00 45.57 2.24
5329 6910 5.581126 TGTGATTTATTTCCACCTGATGC 57.419 39.130 0.00 0.00 0.00 3.91
5330 6911 5.015515 TGTGATTTATTTCCACCTGATGCA 58.984 37.500 0.00 0.00 0.00 3.96
5369 6951 6.370442 CCTACGTTCCAAAATAAGTGTCATGA 59.630 38.462 0.00 0.00 0.00 3.07
5415 6997 6.228616 ACAGAGGGAGTATTTCTTAAGCTC 57.771 41.667 0.00 0.00 0.00 4.09
5442 7024 2.297033 GGATGGTCATTGTGTGTGCTTT 59.703 45.455 0.00 0.00 0.00 3.51
5443 7025 3.243839 GGATGGTCATTGTGTGTGCTTTT 60.244 43.478 0.00 0.00 0.00 2.27
5801 7485 4.149571 GCACATGTACTGACGATGATCATC 59.850 45.833 23.42 23.42 34.56 2.92
5816 7500 2.229675 TCATCTTATCTGCAGGTGCG 57.770 50.000 15.13 2.17 45.83 5.34
5899 7583 6.305638 GCACTTGAATTGTATCGAACCTTTTC 59.694 38.462 0.00 0.00 0.00 2.29
5914 7598 2.752903 CCTTTTCGGTGGTAATTCTGGG 59.247 50.000 0.00 0.00 0.00 4.45
5916 7600 0.034863 TTCGGTGGTAATTCTGGGCC 60.035 55.000 0.00 0.00 0.00 5.80
6095 7783 1.444917 CGAGGTCGGATCCATGTCGA 61.445 60.000 13.41 0.00 35.37 4.20
6314 8042 2.266055 GGAAGCGTCCCCTGTGAG 59.734 66.667 7.56 0.00 38.08 3.51
6315 8043 2.435059 GAAGCGTCCCCTGTGAGC 60.435 66.667 0.00 0.00 0.00 4.26
6393 8139 2.664698 GCGTTTGTTTGCTAGGCTGTAC 60.665 50.000 0.00 0.00 0.00 2.90
6394 8140 2.411031 CGTTTGTTTGCTAGGCTGTACG 60.411 50.000 0.00 0.00 0.00 3.67
6395 8141 2.536761 TTGTTTGCTAGGCTGTACGT 57.463 45.000 0.00 0.00 0.00 3.57
6396 8142 3.663995 TTGTTTGCTAGGCTGTACGTA 57.336 42.857 0.00 0.00 0.00 3.57
6410 8156 1.669779 GTACGTAGATGTGAGGCGAGT 59.330 52.381 0.00 0.00 0.00 4.18
6494 8247 8.097038 TGAAGAATTATTATGCAGCTAGGGTAG 58.903 37.037 0.00 0.00 0.00 3.18
6495 8248 6.951971 AGAATTATTATGCAGCTAGGGTAGG 58.048 40.000 0.00 0.00 0.00 3.18
6634 8434 6.625081 GCTCTGTTTCCTTGTGTAAGTTTTGT 60.625 38.462 0.00 0.00 31.80 2.83
6675 8475 3.193691 CGGTGGCCTATTATACAGAGAGG 59.806 52.174 3.32 0.00 0.00 3.69
6715 8528 7.095270 AGAAGATCATTGCTTTGTTCCATTTC 58.905 34.615 0.00 0.00 0.00 2.17
6729 8542 9.765795 TTTGTTCCATTTCGTTATGGTTAATTT 57.234 25.926 15.01 0.00 44.48 1.82
6741 8554 7.862372 CGTTATGGTTAATTTCTGCATGCTTAT 59.138 33.333 20.33 4.02 0.00 1.73
6746 8559 9.748708 TGGTTAATTTCTGCATGCTTATATTTC 57.251 29.630 20.33 9.68 0.00 2.17
6749 8562 9.970395 TTAATTTCTGCATGCTTATATTTCCTG 57.030 29.630 20.33 0.00 0.00 3.86
6755 10997 3.582998 TGCTTATATTTCCTGCCTGCT 57.417 42.857 0.00 0.00 0.00 4.24
6839 11088 6.388619 TCTTAGGCCTGAAAAGGAGTAAAT 57.611 37.500 17.99 0.00 0.00 1.40
6843 11092 5.012893 AGGCCTGAAAAGGAGTAAATTGAG 58.987 41.667 3.11 0.00 0.00 3.02
6902 11151 1.600916 GACCGGGAGCAAAAGCTGT 60.601 57.895 6.32 0.00 0.00 4.40
6916 11165 5.901552 CAAAAGCTGTTTTTGTCCCTTAGA 58.098 37.500 18.05 0.00 46.78 2.10
6943 11203 2.765807 TGCCCCTAGCTCTGAGGC 60.766 66.667 6.83 9.43 44.23 4.70
6961 11221 1.002274 CCAGGGCCCTCAGTACTCT 59.998 63.158 25.77 0.00 0.00 3.24
7081 11346 3.549794 GGAGGCTGCACTATCATTCTTT 58.450 45.455 0.00 0.00 0.00 2.52
7087 11352 5.393962 GCTGCACTATCATTCTTTCGTTTT 58.606 37.500 0.00 0.00 0.00 2.43
7093 11358 7.064728 GCACTATCATTCTTTCGTTTTAGGAGT 59.935 37.037 0.00 0.00 0.00 3.85
7106 11372 5.878116 CGTTTTAGGAGTTGGGATCACATTA 59.122 40.000 0.00 0.00 0.00 1.90
7112 11378 3.871594 GAGTTGGGATCACATTACCTTCG 59.128 47.826 0.00 0.00 0.00 3.79
7113 11379 2.943033 GTTGGGATCACATTACCTTCGG 59.057 50.000 0.00 0.00 0.00 4.30
7114 11380 1.134220 TGGGATCACATTACCTTCGGC 60.134 52.381 0.00 0.00 0.00 5.54
7115 11381 1.141053 GGGATCACATTACCTTCGGCT 59.859 52.381 0.00 0.00 0.00 5.52
7116 11382 2.213499 GGATCACATTACCTTCGGCTG 58.787 52.381 0.00 0.00 0.00 4.85
7117 11383 1.599542 GATCACATTACCTTCGGCTGC 59.400 52.381 0.00 0.00 0.00 5.25
7118 11384 0.613260 TCACATTACCTTCGGCTGCT 59.387 50.000 0.00 0.00 0.00 4.24
7144 11410 2.167861 GCTGCGGTCGATTCAGGAC 61.168 63.158 11.64 0.00 0.00 3.85
7151 11417 1.630148 GTCGATTCAGGACCAACTCG 58.370 55.000 0.00 0.00 0.00 4.18
7152 11418 1.201647 GTCGATTCAGGACCAACTCGA 59.798 52.381 5.57 5.57 33.23 4.04
7153 11419 2.100197 TCGATTCAGGACCAACTCGAT 58.900 47.619 5.57 0.00 30.94 3.59
7154 11420 2.159240 TCGATTCAGGACCAACTCGATG 60.159 50.000 5.57 0.00 30.94 3.84
7155 11421 1.936547 GATTCAGGACCAACTCGATGC 59.063 52.381 0.00 0.00 0.00 3.91
7156 11422 0.976641 TTCAGGACCAACTCGATGCT 59.023 50.000 0.00 0.00 0.00 3.79
7157 11423 0.247460 TCAGGACCAACTCGATGCTG 59.753 55.000 0.00 0.00 0.00 4.41
7158 11424 0.742281 CAGGACCAACTCGATGCTGG 60.742 60.000 6.13 6.13 37.89 4.85
7159 11425 0.904865 AGGACCAACTCGATGCTGGA 60.905 55.000 12.98 0.00 35.54 3.86
7182 11448 8.112822 TGGATAATAATTTTGTTCAGAGACCCA 58.887 33.333 0.00 0.00 0.00 4.51
7192 11458 1.535833 CAGAGACCCACGTACTCTGT 58.464 55.000 21.81 6.61 46.91 3.41
7198 11464 3.457380 AGACCCACGTACTCTGTATCCTA 59.543 47.826 0.00 0.00 0.00 2.94
7237 11508 9.639563 TCTCTGAGACTGAAACTATTATCATCT 57.360 33.333 2.58 0.00 0.00 2.90
7240 11511 9.474920 CTGAGACTGAAACTATTATCATCTTCC 57.525 37.037 0.00 0.00 0.00 3.46
7241 11512 9.206690 TGAGACTGAAACTATTATCATCTTCCT 57.793 33.333 0.00 0.00 0.00 3.36
7256 11527 8.812513 ATCATCTTCCTTTACATGTGAAATCA 57.187 30.769 9.11 0.00 0.00 2.57
7257 11528 8.812513 TCATCTTCCTTTACATGTGAAATCAT 57.187 30.769 9.11 0.00 0.00 2.45
7258 11529 9.246670 TCATCTTCCTTTACATGTGAAATCATT 57.753 29.630 9.11 0.00 0.00 2.57
7259 11530 9.512435 CATCTTCCTTTACATGTGAAATCATTC 57.488 33.333 9.11 0.00 36.04 2.67
7260 11531 8.634335 TCTTCCTTTACATGTGAAATCATTCA 57.366 30.769 9.11 0.00 43.18 2.57
7261 11532 9.076781 TCTTCCTTTACATGTGAAATCATTCAA 57.923 29.630 9.11 0.00 46.66 2.69
7262 11533 9.695526 CTTCCTTTACATGTGAAATCATTCAAA 57.304 29.630 9.11 0.00 46.66 2.69
7281 11552 3.922171 AAAAACAAACCCTGCATTCCA 57.078 38.095 0.00 0.00 0.00 3.53
7282 11553 3.473923 AAAACAAACCCTGCATTCCAG 57.526 42.857 0.00 0.00 41.41 3.86
7283 11554 0.681175 AACAAACCCTGCATTCCAGC 59.319 50.000 0.00 0.00 40.36 4.85
7284 11555 0.469705 ACAAACCCTGCATTCCAGCA 60.470 50.000 0.00 0.00 43.35 4.41
7292 11563 1.908344 TGCATTCCAGCAGCTTAACA 58.092 45.000 0.00 0.00 40.11 2.41
7293 11564 2.237643 TGCATTCCAGCAGCTTAACAA 58.762 42.857 0.00 0.00 40.11 2.83
7294 11565 2.030007 TGCATTCCAGCAGCTTAACAAC 60.030 45.455 0.00 0.00 40.11 3.32
7295 11566 2.030007 GCATTCCAGCAGCTTAACAACA 60.030 45.455 0.00 0.00 0.00 3.33
7296 11567 3.552684 GCATTCCAGCAGCTTAACAACAA 60.553 43.478 0.00 0.00 0.00 2.83
7297 11568 4.619973 CATTCCAGCAGCTTAACAACAAA 58.380 39.130 0.00 0.00 0.00 2.83
7298 11569 3.708563 TCCAGCAGCTTAACAACAAAC 57.291 42.857 0.00 0.00 0.00 2.93
7299 11570 3.287222 TCCAGCAGCTTAACAACAAACT 58.713 40.909 0.00 0.00 0.00 2.66
7300 11571 4.456535 TCCAGCAGCTTAACAACAAACTA 58.543 39.130 0.00 0.00 0.00 2.24
7301 11572 4.884744 TCCAGCAGCTTAACAACAAACTAA 59.115 37.500 0.00 0.00 0.00 2.24
7302 11573 5.534654 TCCAGCAGCTTAACAACAAACTAAT 59.465 36.000 0.00 0.00 0.00 1.73
7303 11574 5.858581 CCAGCAGCTTAACAACAAACTAATC 59.141 40.000 0.00 0.00 0.00 1.75
7304 11575 6.437928 CAGCAGCTTAACAACAAACTAATCA 58.562 36.000 0.00 0.00 0.00 2.57
7305 11576 7.086376 CAGCAGCTTAACAACAAACTAATCAT 58.914 34.615 0.00 0.00 0.00 2.45
7306 11577 7.272084 CAGCAGCTTAACAACAAACTAATCATC 59.728 37.037 0.00 0.00 0.00 2.92
7307 11578 7.175641 AGCAGCTTAACAACAAACTAATCATCT 59.824 33.333 0.00 0.00 0.00 2.90
7308 11579 7.483059 GCAGCTTAACAACAAACTAATCATCTC 59.517 37.037 0.00 0.00 0.00 2.75
7309 11580 7.689812 CAGCTTAACAACAAACTAATCATCTCG 59.310 37.037 0.00 0.00 0.00 4.04
7310 11581 7.602644 AGCTTAACAACAAACTAATCATCTCGA 59.397 33.333 0.00 0.00 0.00 4.04
7311 11582 8.227791 GCTTAACAACAAACTAATCATCTCGAA 58.772 33.333 0.00 0.00 0.00 3.71
7312 11583 9.746711 CTTAACAACAAACTAATCATCTCGAAG 57.253 33.333 0.00 0.00 0.00 3.79
7313 11584 6.170675 ACAACAAACTAATCATCTCGAAGC 57.829 37.500 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.728351 TTATGGCGCACTTATAGTTTCAC 57.272 39.130 10.83 0.00 0.00 3.18
46 47 8.314635 CGTCTTTCTTCTTTGTAGTTATCGATG 58.685 37.037 8.54 0.00 0.00 3.84
58 59 2.162408 GGGATGGCGTCTTTCTTCTTTG 59.838 50.000 6.67 0.00 0.00 2.77
159 160 3.559238 TGTCGTTAGTAGGAAACCGAC 57.441 47.619 0.00 0.00 34.23 4.79
183 184 4.450082 AGAATGGGCGGTGTTTAATTTC 57.550 40.909 0.00 0.00 0.00 2.17
187 188 2.554893 GTCAAGAATGGGCGGTGTTTAA 59.445 45.455 0.00 0.00 0.00 1.52
188 189 2.156098 GTCAAGAATGGGCGGTGTTTA 58.844 47.619 0.00 0.00 0.00 2.01
190 191 0.179004 TGTCAAGAATGGGCGGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
191 192 0.606401 CTGTCAAGAATGGGCGGTGT 60.606 55.000 0.00 0.00 0.00 4.16
192 193 0.606401 ACTGTCAAGAATGGGCGGTG 60.606 55.000 0.00 0.00 0.00 4.94
193 194 0.110486 AACTGTCAAGAATGGGCGGT 59.890 50.000 0.00 0.00 0.00 5.68
194 195 0.523072 CAACTGTCAAGAATGGGCGG 59.477 55.000 0.00 0.00 0.00 6.13
195 196 0.523072 CCAACTGTCAAGAATGGGCG 59.477 55.000 0.00 0.00 33.20 6.13
201 202 2.016318 CTGTGTGCCAACTGTCAAGAA 58.984 47.619 0.00 0.00 0.00 2.52
253 254 5.912396 TCTTTAAAGTTTTGCTGCGTGTATG 59.088 36.000 14.74 0.00 0.00 2.39
260 261 8.977505 TCAATTATGTCTTTAAAGTTTTGCTGC 58.022 29.630 14.74 0.00 0.00 5.25
263 264 9.797473 GCTTCAATTATGTCTTTAAAGTTTTGC 57.203 29.630 14.74 3.15 0.00 3.68
402 624 1.513178 GTCGACACGCAGACATAATCG 59.487 52.381 11.55 0.00 37.34 3.34
407 629 0.452184 CTAGGTCGACACGCAGACAT 59.548 55.000 18.91 0.00 39.01 3.06
408 630 1.583495 CCTAGGTCGACACGCAGACA 61.583 60.000 18.91 0.00 39.01 3.41
411 633 2.490217 CCCTAGGTCGACACGCAG 59.510 66.667 18.91 7.83 0.00 5.18
415 637 0.249398 ATTGTGCCCTAGGTCGACAC 59.751 55.000 18.91 10.76 0.00 3.67
418 640 2.568062 TGTTAATTGTGCCCTAGGTCGA 59.432 45.455 8.29 0.00 0.00 4.20
435 657 0.179051 AACCGTTCGCCAAGGTGTTA 60.179 50.000 0.00 0.00 38.44 2.41
438 660 1.841663 CTCAACCGTTCGCCAAGGTG 61.842 60.000 0.00 0.00 38.44 4.00
440 662 1.566018 GACTCAACCGTTCGCCAAGG 61.566 60.000 0.00 0.00 0.00 3.61
442 664 1.952133 CGACTCAACCGTTCGCCAA 60.952 57.895 0.00 0.00 0.00 4.52
443 665 2.355363 CGACTCAACCGTTCGCCA 60.355 61.111 0.00 0.00 0.00 5.69
444 666 3.774702 GCGACTCAACCGTTCGCC 61.775 66.667 3.88 0.00 43.03 5.54
445 667 4.117372 CGCGACTCAACCGTTCGC 62.117 66.667 0.00 5.16 44.99 4.70
447 669 2.654912 CCACGCGACTCAACCGTTC 61.655 63.158 15.93 0.00 32.18 3.95
448 670 2.660552 CCACGCGACTCAACCGTT 60.661 61.111 15.93 0.00 32.18 4.44
449 671 3.598715 TCCACGCGACTCAACCGT 61.599 61.111 15.93 0.00 35.29 4.83
450 672 3.103911 GTCCACGCGACTCAACCG 61.104 66.667 15.93 0.00 38.57 4.44
451 673 3.103911 CGTCCACGCGACTCAACC 61.104 66.667 15.93 0.00 39.56 3.77
453 675 0.806884 AAAACGTCCACGCGACTCAA 60.807 50.000 15.93 0.00 44.43 3.02
454 676 1.227031 AAAACGTCCACGCGACTCA 60.227 52.632 15.93 0.00 44.43 3.41
456 678 0.599204 ATCAAAACGTCCACGCGACT 60.599 50.000 15.93 0.00 44.43 4.18
461 683 1.924191 GCCACAATCAAAACGTCCACG 60.924 52.381 0.00 0.00 46.33 4.94
462 684 1.336755 AGCCACAATCAAAACGTCCAC 59.663 47.619 0.00 0.00 0.00 4.02
463 685 1.686355 AGCCACAATCAAAACGTCCA 58.314 45.000 0.00 0.00 0.00 4.02
464 686 2.793278 AAGCCACAATCAAAACGTCC 57.207 45.000 0.00 0.00 0.00 4.79
466 688 3.059188 CGACTAAGCCACAATCAAAACGT 60.059 43.478 0.00 0.00 0.00 3.99
469 721 4.385825 AGACGACTAAGCCACAATCAAAA 58.614 39.130 0.00 0.00 0.00 2.44
476 728 3.365666 CGAGTTTAGACGACTAAGCCACA 60.366 47.826 15.42 0.00 39.50 4.17
517 769 0.390472 TCGCGCATATTGTGGTCACA 60.390 50.000 8.75 0.00 39.98 3.58
547 799 1.602851 CGTCCATCTACTAGTGTCCCG 59.397 57.143 5.39 0.00 0.00 5.14
555 807 9.529823 AATATACTCATTTCCGTCCATCTACTA 57.470 33.333 0.00 0.00 0.00 1.82
593 868 5.607939 TGACACATATGGTAGTAACTGGG 57.392 43.478 7.80 0.00 0.00 4.45
597 872 7.868775 TCTACGATGACACATATGGTAGTAAC 58.131 38.462 7.80 0.00 37.78 2.50
601 876 6.971602 ACTTCTACGATGACACATATGGTAG 58.028 40.000 7.80 7.11 37.86 3.18
618 940 1.000938 CCGCCGGTATGGTACTTCTAC 60.001 57.143 1.90 0.00 41.21 2.59
620 942 0.685458 ACCGCCGGTATGGTACTTCT 60.685 55.000 7.20 0.00 41.21 2.85
625 947 1.263342 TTTCCACCGCCGGTATGGTA 61.263 55.000 9.25 0.00 41.21 3.25
662 996 1.908066 GATCGCTTTCAACGGCGGTT 61.908 55.000 13.24 3.45 45.55 4.44
666 1000 3.001576 GTTGATCGCTTTCAACGGC 57.998 52.632 11.38 0.00 44.19 5.68
670 1004 2.357323 TGCACTTGTTGATCGCTTTCAA 59.643 40.909 0.00 0.00 33.32 2.69
671 1005 1.946081 TGCACTTGTTGATCGCTTTCA 59.054 42.857 0.00 0.00 0.00 2.69
672 1006 2.310577 GTGCACTTGTTGATCGCTTTC 58.689 47.619 10.32 0.00 0.00 2.62
673 1007 1.334059 CGTGCACTTGTTGATCGCTTT 60.334 47.619 16.19 0.00 0.00 3.51
714 1048 7.420002 GGGTAAAAGGTAAAACTTGTACTGTG 58.580 38.462 7.79 0.00 39.84 3.66
715 1049 6.260714 CGGGTAAAAGGTAAAACTTGTACTGT 59.739 38.462 7.79 0.00 39.84 3.55
716 1050 6.661669 CGGGTAAAAGGTAAAACTTGTACTG 58.338 40.000 7.79 0.00 39.84 2.74
717 1051 5.239306 GCGGGTAAAAGGTAAAACTTGTACT 59.761 40.000 7.79 0.00 39.84 2.73
718 1052 5.008514 TGCGGGTAAAAGGTAAAACTTGTAC 59.991 40.000 0.16 0.16 39.42 2.90
719 1053 5.128919 TGCGGGTAAAAGGTAAAACTTGTA 58.871 37.500 0.00 0.00 0.00 2.41
720 1054 3.952967 TGCGGGTAAAAGGTAAAACTTGT 59.047 39.130 0.00 0.00 0.00 3.16
721 1055 4.571372 TGCGGGTAAAAGGTAAAACTTG 57.429 40.909 0.00 0.00 0.00 3.16
722 1056 5.595257 TTTGCGGGTAAAAGGTAAAACTT 57.405 34.783 0.00 0.00 0.00 2.66
723 1057 5.595257 TTTTGCGGGTAAAAGGTAAAACT 57.405 34.783 0.00 0.00 0.00 2.66
724 1058 5.811613 AGTTTTTGCGGGTAAAAGGTAAAAC 59.188 36.000 0.00 0.00 35.55 2.43
725 1059 5.975282 AGTTTTTGCGGGTAAAAGGTAAAA 58.025 33.333 0.00 0.00 31.80 1.52
726 1060 5.595257 AGTTTTTGCGGGTAAAAGGTAAA 57.405 34.783 0.00 0.00 31.80 2.01
727 1061 5.278414 GCTAGTTTTTGCGGGTAAAAGGTAA 60.278 40.000 0.00 0.00 31.80 2.85
728 1062 4.216042 GCTAGTTTTTGCGGGTAAAAGGTA 59.784 41.667 0.00 0.00 31.80 3.08
729 1063 3.005050 GCTAGTTTTTGCGGGTAAAAGGT 59.995 43.478 0.00 0.00 31.80 3.50
730 1064 3.571571 GCTAGTTTTTGCGGGTAAAAGG 58.428 45.455 0.00 0.00 31.80 3.11
731 1065 3.571571 GGCTAGTTTTTGCGGGTAAAAG 58.428 45.455 0.00 0.00 31.80 2.27
732 1066 2.296752 GGGCTAGTTTTTGCGGGTAAAA 59.703 45.455 0.00 0.00 0.00 1.52
733 1067 1.887854 GGGCTAGTTTTTGCGGGTAAA 59.112 47.619 0.00 0.00 0.00 2.01
734 1068 1.536940 GGGCTAGTTTTTGCGGGTAA 58.463 50.000 0.00 0.00 0.00 2.85
735 1069 0.322726 GGGGCTAGTTTTTGCGGGTA 60.323 55.000 0.00 0.00 0.00 3.69
736 1070 1.605451 GGGGCTAGTTTTTGCGGGT 60.605 57.895 0.00 0.00 0.00 5.28
737 1071 2.696759 CGGGGCTAGTTTTTGCGGG 61.697 63.158 0.00 0.00 0.00 6.13
738 1072 2.696759 CCGGGGCTAGTTTTTGCGG 61.697 63.158 0.00 0.00 0.00 5.69
813 1178 1.880027 GGGCTGGTTTTATAGATGCCG 59.120 52.381 0.00 0.00 39.73 5.69
835 1200 1.411074 GGAAGTGGAGGTGGTGGTTTT 60.411 52.381 0.00 0.00 0.00 2.43
1080 1495 3.003763 AGGAACTCCAGCGGGTCC 61.004 66.667 1.81 2.60 38.89 4.46
1380 1809 2.947852 TCGTGAGTTTTAGCAGCTCTC 58.052 47.619 0.00 0.00 0.00 3.20
1473 1906 2.827190 AGATGCTGCCATGCCACG 60.827 61.111 0.00 0.00 0.00 4.94
1571 2008 2.174319 GCTGAGCGTCGAAATCCCC 61.174 63.158 0.00 0.00 0.00 4.81
1590 2027 1.068402 TGTAATTCTCGGTCGAACGCA 60.068 47.619 20.19 5.37 0.00 5.24
1593 2030 4.665897 GCAACTTGTAATTCTCGGTCGAAC 60.666 45.833 0.00 0.00 0.00 3.95
1610 2047 6.424812 GCAGAAAATGTTTGGATTAGCAACTT 59.575 34.615 0.00 0.00 0.00 2.66
1612 2049 5.164061 CGCAGAAAATGTTTGGATTAGCAAC 60.164 40.000 0.00 0.00 0.00 4.17
1613 2050 4.922692 CGCAGAAAATGTTTGGATTAGCAA 59.077 37.500 0.00 0.00 0.00 3.91
1614 2051 4.484236 CGCAGAAAATGTTTGGATTAGCA 58.516 39.130 0.00 0.00 0.00 3.49
1616 2053 4.423732 CCCGCAGAAAATGTTTGGATTAG 58.576 43.478 0.00 0.00 0.00 1.73
1617 2054 3.367910 GCCCGCAGAAAATGTTTGGATTA 60.368 43.478 0.00 0.00 0.00 1.75
1618 2055 2.612721 GCCCGCAGAAAATGTTTGGATT 60.613 45.455 0.00 0.00 0.00 3.01
1619 2056 1.066929 GCCCGCAGAAAATGTTTGGAT 60.067 47.619 0.00 0.00 0.00 3.41
1620 2057 0.316841 GCCCGCAGAAAATGTTTGGA 59.683 50.000 0.00 0.00 0.00 3.53
1621 2058 0.318120 AGCCCGCAGAAAATGTTTGG 59.682 50.000 0.00 0.00 0.00 3.28
1622 2059 1.421382 CAGCCCGCAGAAAATGTTTG 58.579 50.000 0.00 0.00 0.00 2.93
1623 2060 0.318120 CCAGCCCGCAGAAAATGTTT 59.682 50.000 0.00 0.00 0.00 2.83
1624 2061 0.827507 ACCAGCCCGCAGAAAATGTT 60.828 50.000 0.00 0.00 0.00 2.71
1625 2062 0.827507 AACCAGCCCGCAGAAAATGT 60.828 50.000 0.00 0.00 0.00 2.71
1626 2063 1.135402 GTAACCAGCCCGCAGAAAATG 60.135 52.381 0.00 0.00 0.00 2.32
1627 2064 1.173913 GTAACCAGCCCGCAGAAAAT 58.826 50.000 0.00 0.00 0.00 1.82
1628 2065 0.109723 AGTAACCAGCCCGCAGAAAA 59.890 50.000 0.00 0.00 0.00 2.29
1629 2066 0.978151 TAGTAACCAGCCCGCAGAAA 59.022 50.000 0.00 0.00 0.00 2.52
1630 2067 0.248289 GTAGTAACCAGCCCGCAGAA 59.752 55.000 0.00 0.00 0.00 3.02
1631 2068 0.613853 AGTAGTAACCAGCCCGCAGA 60.614 55.000 0.00 0.00 0.00 4.26
1632 2069 0.460284 CAGTAGTAACCAGCCCGCAG 60.460 60.000 0.00 0.00 0.00 5.18
1633 2070 1.189524 ACAGTAGTAACCAGCCCGCA 61.190 55.000 0.00 0.00 0.00 5.69
1634 2071 0.739813 CACAGTAGTAACCAGCCCGC 60.740 60.000 0.00 0.00 0.00 6.13
1635 2072 0.108329 CCACAGTAGTAACCAGCCCG 60.108 60.000 0.00 0.00 0.00 6.13
1636 2073 1.207329 CTCCACAGTAGTAACCAGCCC 59.793 57.143 0.00 0.00 0.00 5.19
1637 2074 1.900486 ACTCCACAGTAGTAACCAGCC 59.100 52.381 0.00 0.00 0.00 4.85
1638 2075 3.427233 CGTACTCCACAGTAGTAACCAGC 60.427 52.174 0.00 0.00 35.67 4.85
1639 2076 3.755378 ACGTACTCCACAGTAGTAACCAG 59.245 47.826 0.00 0.00 35.67 4.00
1666 2103 3.045601 AGGAAACCACGAACTCATCAG 57.954 47.619 0.00 0.00 0.00 2.90
1717 2157 2.103736 GTACTGGGGCGTACGCTC 59.896 66.667 36.24 34.16 41.76 5.03
1795 2235 2.500098 TGAATTCGACGGGAGAAGGAAT 59.500 45.455 0.04 0.00 0.00 3.01
1810 2251 8.641499 AGACGAAGAGAATAGATGTTGAATTC 57.359 34.615 0.00 0.00 0.00 2.17
1834 2277 1.616159 AACATGGGGTCAAACGGAAG 58.384 50.000 0.00 0.00 0.00 3.46
1984 2524 3.377346 AGAACCGAGGAATCGATGATG 57.623 47.619 0.00 0.00 34.64 3.07
2021 2561 3.873361 TGCTAATGCGAGAGAAGAAATGG 59.127 43.478 0.00 0.00 43.34 3.16
2118 2672 2.263741 GCCACCTCCTGCACAACAG 61.264 63.158 0.00 0.00 46.77 3.16
2244 2798 0.538287 AGGCAAAGGTGACAGGAAGC 60.538 55.000 0.00 0.00 33.83 3.86
2297 2866 2.480037 CTGCACTTAAATCACGAGCACA 59.520 45.455 0.00 0.00 0.00 4.57
2415 3003 1.409427 CATCCAAGGACGGTACTCCTC 59.591 57.143 4.24 0.00 40.04 3.71
2418 3006 0.824759 AGCATCCAAGGACGGTACTC 59.175 55.000 0.00 0.00 0.00 2.59
2425 3016 0.530870 GCCTACGAGCATCCAAGGAC 60.531 60.000 0.00 0.00 35.99 3.85
2498 3173 8.018677 ACTCTAAATAACTTCACACATCAACG 57.981 34.615 0.00 0.00 0.00 4.10
2602 3277 0.172803 GTAGAGCGCGGAAAAGAGGA 59.827 55.000 8.83 0.00 0.00 3.71
2685 3362 5.104527 AGCAAGGACAATGGCACTACTAATA 60.105 40.000 0.00 0.00 0.00 0.98
2686 3363 3.947834 GCAAGGACAATGGCACTACTAAT 59.052 43.478 0.00 0.00 0.00 1.73
2687 3364 3.009033 AGCAAGGACAATGGCACTACTAA 59.991 43.478 0.00 0.00 0.00 2.24
2736 3413 6.340522 CAGGGAAAAGTTTTGTGAACAGATT 58.659 36.000 5.36 0.00 0.00 2.40
2789 3466 5.379827 GTCGGTATACTGAACAAAAACAGC 58.620 41.667 16.03 0.00 37.61 4.40
2805 3482 7.894376 TTTAGTTGAGAAATTTCGTCGGTAT 57.106 32.000 12.42 0.00 0.00 2.73
2884 3592 2.165319 ACTTCTACCACAACGAAGCC 57.835 50.000 0.00 0.00 38.10 4.35
2889 3597 4.446719 GGTTGTTCTACTTCTACCACAACG 59.553 45.833 6.84 0.00 43.17 4.10
2910 3618 0.616111 ATGACTCTTCTGGCCTCGGT 60.616 55.000 3.32 0.00 0.00 4.69
3012 3897 6.992123 TCTCTAGAGAAAATTTTGTGCACAGA 59.008 34.615 20.31 13.53 33.91 3.41
3184 4075 1.143620 GAGATCGCAGGCTCTTGCT 59.856 57.895 2.60 0.00 41.90 3.91
3185 4076 2.236382 CGAGATCGCAGGCTCTTGC 61.236 63.158 0.00 0.00 40.67 4.01
3245 4141 3.781307 TTGTCGGCGGGGGAGATG 61.781 66.667 7.21 0.00 0.00 2.90
3246 4142 3.782443 GTTGTCGGCGGGGGAGAT 61.782 66.667 7.21 0.00 0.00 2.75
3314 4212 7.859279 TGCTGGTGCATCCAAAATGGAGATA 62.859 44.000 5.22 0.00 46.59 1.98
3360 4264 1.251251 GTGCTTGTTCATGGGAAGCT 58.749 50.000 18.77 0.00 42.19 3.74
3361 4265 0.244721 GGTGCTTGTTCATGGGAAGC 59.755 55.000 13.98 13.98 42.07 3.86
3362 4266 1.270550 GTGGTGCTTGTTCATGGGAAG 59.729 52.381 0.00 0.00 32.62 3.46
3363 4267 1.327303 GTGGTGCTTGTTCATGGGAA 58.673 50.000 0.00 0.00 0.00 3.97
3364 4268 0.184692 TGTGGTGCTTGTTCATGGGA 59.815 50.000 0.00 0.00 0.00 4.37
3403 4339 1.407437 GCAACAGGACCCTACAGATGG 60.407 57.143 0.00 0.00 0.00 3.51
3404 4340 1.407437 GGCAACAGGACCCTACAGATG 60.407 57.143 0.00 0.00 0.00 2.90
3405 4341 0.912486 GGCAACAGGACCCTACAGAT 59.088 55.000 0.00 0.00 0.00 2.90
3414 4585 0.036732 TGACAGATGGGCAACAGGAC 59.963 55.000 0.00 0.00 39.74 3.85
3444 4615 1.286257 AGGAAGAAAAGAGGGATGGGC 59.714 52.381 0.00 0.00 0.00 5.36
3448 4619 4.630177 AGAGCTAGGAAGAAAAGAGGGAT 58.370 43.478 0.00 0.00 0.00 3.85
3495 4667 4.559862 AAGGAGAACAAGGTACATGAGG 57.440 45.455 0.00 0.00 0.00 3.86
3632 4810 6.659824 CCCCCAACAGTAATTTGTAGATAGT 58.340 40.000 0.00 0.00 0.00 2.12
3634 4812 5.442391 GCCCCCAACAGTAATTTGTAGATA 58.558 41.667 0.00 0.00 0.00 1.98
3635 4813 4.278310 GCCCCCAACAGTAATTTGTAGAT 58.722 43.478 0.00 0.00 0.00 1.98
3636 4814 3.562609 GGCCCCCAACAGTAATTTGTAGA 60.563 47.826 0.00 0.00 0.00 2.59
3640 4842 1.638529 TGGCCCCCAACAGTAATTTG 58.361 50.000 0.00 0.00 0.00 2.32
3660 4862 6.763135 CACATTATTCTAGCACCATACTGTGT 59.237 38.462 0.00 0.00 38.52 3.72
3739 4941 1.021202 CGTCAAGCCAGACAAACCAA 58.979 50.000 6.90 0.00 38.43 3.67
3756 4958 8.958119 TTCCAGATTACAAGCTAATAATTCGT 57.042 30.769 4.38 0.00 0.00 3.85
3768 4970 7.388460 AGAAAGATGCTTTCCAGATTACAAG 57.612 36.000 14.38 0.00 0.00 3.16
3907 5306 2.362889 GTGTGGGGCATTCCTGGG 60.363 66.667 0.00 0.00 35.33 4.45
4040 5443 3.694746 GGGGGCCTAAACAACTGC 58.305 61.111 0.84 0.00 0.00 4.40
4062 5465 1.618837 CGACAGGAAGAGGTTTCAGGA 59.381 52.381 0.00 0.00 0.00 3.86
4281 5692 5.224821 AGAGTTGAGTACCTTTTACCCAC 57.775 43.478 0.00 0.00 0.00 4.61
4559 6008 0.679002 ATTGAGCAAGAGCGTGCCAT 60.679 50.000 4.81 0.00 46.14 4.40
4569 6018 6.981762 AAGTCTGTCTGATAATTGAGCAAG 57.018 37.500 0.00 0.00 0.00 4.01
4587 6036 8.688747 AACTATAGTACGGCATAAGTAAGTCT 57.311 34.615 5.65 0.00 0.00 3.24
4645 6094 2.351726 ACAATTATTCAAGGCTCGTCGC 59.648 45.455 0.00 0.00 38.13 5.19
4676 6131 3.118592 GGTGGGTCCTTAACTCTCTCATG 60.119 52.174 0.00 0.00 0.00 3.07
4689 6144 0.481128 AAATTTCACGGGTGGGTCCT 59.519 50.000 0.00 0.00 36.25 3.85
4700 6156 5.163663 TGCATAGATCGAACCCAAATTTCAC 60.164 40.000 0.00 0.00 0.00 3.18
4761 6231 5.774690 AGGAATATTTGCTCCAAGTGAACAA 59.225 36.000 0.00 0.00 33.83 2.83
4762 6232 5.324409 AGGAATATTTGCTCCAAGTGAACA 58.676 37.500 0.00 0.00 33.83 3.18
4763 6233 5.904362 AGGAATATTTGCTCCAAGTGAAC 57.096 39.130 0.00 0.00 33.83 3.18
4764 6234 5.590259 GCTAGGAATATTTGCTCCAAGTGAA 59.410 40.000 0.00 0.00 33.83 3.18
4766 6236 4.883585 TGCTAGGAATATTTGCTCCAAGTG 59.116 41.667 0.00 0.00 33.83 3.16
4767 6237 5.116084 TGCTAGGAATATTTGCTCCAAGT 57.884 39.130 0.00 0.00 33.83 3.16
4768 6238 5.128919 ACTGCTAGGAATATTTGCTCCAAG 58.871 41.667 0.00 0.00 33.83 3.61
4769 6239 5.116084 ACTGCTAGGAATATTTGCTCCAA 57.884 39.130 0.00 0.00 33.83 3.53
4770 6240 4.778213 ACTGCTAGGAATATTTGCTCCA 57.222 40.909 0.00 0.00 33.83 3.86
4771 6241 6.768381 ACTAAACTGCTAGGAATATTTGCTCC 59.232 38.462 0.00 0.00 31.99 4.70
4772 6242 7.281100 ACACTAAACTGCTAGGAATATTTGCTC 59.719 37.037 0.00 0.00 31.99 4.26
4773 6243 7.066284 CACACTAAACTGCTAGGAATATTTGCT 59.934 37.037 0.00 0.00 34.84 3.91
4775 6245 8.268850 ACACACTAAACTGCTAGGAATATTTG 57.731 34.615 0.00 0.00 0.00 2.32
4797 6267 7.059488 CGTTTTGCAATACTGTAGATCAAACAC 59.941 37.037 16.42 9.62 0.00 3.32
4822 6304 4.447724 TCTTTTCTTTCGGTTCAGTGATCG 59.552 41.667 9.32 9.32 0.00 3.69
4881 6363 9.219603 TCATAGTTTTAACAAGAGATTGTCCAG 57.780 33.333 0.00 0.00 33.35 3.86
5107 6687 1.079127 ATCGTCCTTGCCGGAACTG 60.079 57.895 5.05 0.00 45.32 3.16
5272 6852 2.042259 AGCCGTGACCGTGACGATA 61.042 57.895 12.37 0.00 39.21 2.92
5329 6910 4.920640 ACGTAGGGAGTAGTCATCATTG 57.079 45.455 0.00 0.00 0.00 2.82
5330 6911 4.341520 GGAACGTAGGGAGTAGTCATCATT 59.658 45.833 0.00 0.00 0.00 2.57
5415 6997 2.160219 CACACAATGACCATCCAACTCG 59.840 50.000 0.00 0.00 0.00 4.18
5442 7024 2.694628 ACCTCTCAATGCTGCAAACAAA 59.305 40.909 6.36 0.00 0.00 2.83
5443 7025 2.034939 CACCTCTCAATGCTGCAAACAA 59.965 45.455 6.36 0.00 0.00 2.83
5646 7299 2.634940 CAGGAAGTTGTTCTCCTCCTCA 59.365 50.000 0.00 0.00 32.72 3.86
5801 7485 2.012237 CAGCGCACCTGCAGATAAG 58.988 57.895 17.39 5.05 42.21 1.73
5816 7500 0.108138 ATACGACCTTCCAGTGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
5899 7583 0.034477 AAGGCCCAGAATTACCACCG 60.034 55.000 0.00 0.00 0.00 4.94
5900 7584 2.231716 AAAGGCCCAGAATTACCACC 57.768 50.000 0.00 0.00 0.00 4.61
5914 7598 6.311200 CCATGATAACAACTAAGCAAAAAGGC 59.689 38.462 0.00 0.00 0.00 4.35
5916 7600 6.033831 CGCCATGATAACAACTAAGCAAAAAG 59.966 38.462 0.00 0.00 0.00 2.27
6031 7719 2.627945 TGAGATGATGTTACCGTTGCC 58.372 47.619 0.00 0.00 0.00 4.52
6032 7720 4.882671 AATGAGATGATGTTACCGTTGC 57.117 40.909 0.00 0.00 0.00 4.17
6095 7783 0.251474 ATCACCACACCTGCAAGCAT 60.251 50.000 0.00 0.00 0.00 3.79
6315 8043 3.470567 GTCGGCAGTTCGCTCACG 61.471 66.667 0.00 0.00 41.91 4.35
6393 8139 0.867753 GCACTCGCCTCACATCTACG 60.868 60.000 0.00 0.00 0.00 3.51
6394 8140 0.173481 TGCACTCGCCTCACATCTAC 59.827 55.000 0.00 0.00 37.32 2.59
6395 8141 0.894835 TTGCACTCGCCTCACATCTA 59.105 50.000 0.00 0.00 37.32 1.98
6396 8142 0.671781 GTTGCACTCGCCTCACATCT 60.672 55.000 0.00 0.00 37.32 2.90
6410 8156 1.808531 GCCCATGCTGTTCTGTTGCA 61.809 55.000 0.00 0.00 41.13 4.08
6431 8183 3.077914 AGGTACACCTACACCCCAC 57.922 57.895 0.00 0.00 46.48 4.61
6470 8223 7.398024 CCTACCCTAGCTGCATAATAATTCTT 58.602 38.462 1.02 0.00 0.00 2.52
6471 8224 6.069963 CCCTACCCTAGCTGCATAATAATTCT 60.070 42.308 1.02 0.00 0.00 2.40
6472 8225 6.116126 CCCTACCCTAGCTGCATAATAATTC 58.884 44.000 1.02 0.00 0.00 2.17
6473 8226 5.573707 GCCCTACCCTAGCTGCATAATAATT 60.574 44.000 1.02 0.00 0.00 1.40
6494 8247 0.036875 ACAAGTAACAGCAGGAGCCC 59.963 55.000 0.00 0.00 43.56 5.19
6495 8248 1.897560 AACAAGTAACAGCAGGAGCC 58.102 50.000 0.00 0.00 43.56 4.70
6675 8475 1.759445 TCTTCTCCTGCCACTAGATGC 59.241 52.381 0.00 0.00 0.00 3.91
6715 8528 5.581605 AGCATGCAGAAATTAACCATAACG 58.418 37.500 21.98 0.00 0.00 3.18
6729 8542 3.822735 GGCAGGAAATATAAGCATGCAGA 59.177 43.478 21.98 7.30 40.70 4.26
6741 8554 1.491668 TACCGAGCAGGCAGGAAATA 58.508 50.000 11.78 0.00 46.52 1.40
6745 8558 0.178068 GATTTACCGAGCAGGCAGGA 59.822 55.000 11.78 0.00 46.52 3.86
6746 8559 0.107703 TGATTTACCGAGCAGGCAGG 60.108 55.000 4.59 4.59 46.52 4.85
6749 8562 0.947244 CCATGATTTACCGAGCAGGC 59.053 55.000 0.00 0.00 46.52 4.85
6755 10997 6.288294 CCAACTATCTTCCATGATTTACCGA 58.712 40.000 0.00 0.00 0.00 4.69
6839 11088 5.878116 GCAACCACCATTATACACTACTCAA 59.122 40.000 0.00 0.00 0.00 3.02
6843 11092 3.558418 CCGCAACCACCATTATACACTAC 59.442 47.826 0.00 0.00 0.00 2.73
6902 11151 6.017440 CAGACGATGTTTCTAAGGGACAAAAA 60.017 38.462 0.00 0.00 0.00 1.94
6914 11163 1.482593 CTAGGGGCAGACGATGTTTCT 59.517 52.381 0.00 0.00 0.00 2.52
6915 11164 1.941325 CTAGGGGCAGACGATGTTTC 58.059 55.000 0.00 0.00 0.00 2.78
6916 11165 0.107654 GCTAGGGGCAGACGATGTTT 60.108 55.000 0.00 0.00 41.35 2.83
6943 11203 0.261991 TAGAGTACTGAGGGCCCTGG 59.738 60.000 34.59 24.03 0.00 4.45
6953 11213 7.012894 ACAGCTTTAGCAGTAGATAGAGTACTG 59.987 40.741 0.00 5.99 46.92 2.74
6954 11214 7.057894 ACAGCTTTAGCAGTAGATAGAGTACT 58.942 38.462 0.00 0.00 45.16 2.73
6961 11221 4.162320 AGGCAACAGCTTTAGCAGTAGATA 59.838 41.667 4.33 0.00 45.16 1.98
7072 11335 6.151144 CCCAACTCCTAAAACGAAAGAATGAT 59.849 38.462 0.00 0.00 0.00 2.45
7081 11346 3.325425 TGTGATCCCAACTCCTAAAACGA 59.675 43.478 0.00 0.00 0.00 3.85
7087 11352 4.631234 AGGTAATGTGATCCCAACTCCTA 58.369 43.478 0.00 0.00 0.00 2.94
7145 11411 8.131100 ACAAAATTATTATCCAGCATCGAGTTG 58.869 33.333 0.00 0.00 0.00 3.16
7146 11412 8.225603 ACAAAATTATTATCCAGCATCGAGTT 57.774 30.769 0.00 0.00 0.00 3.01
7147 11413 7.807977 ACAAAATTATTATCCAGCATCGAGT 57.192 32.000 0.00 0.00 0.00 4.18
7148 11414 8.344831 TGAACAAAATTATTATCCAGCATCGAG 58.655 33.333 0.00 0.00 0.00 4.04
7149 11415 8.219546 TGAACAAAATTATTATCCAGCATCGA 57.780 30.769 0.00 0.00 0.00 3.59
7150 11416 8.344831 TCTGAACAAAATTATTATCCAGCATCG 58.655 33.333 0.00 0.00 0.00 3.84
7151 11417 9.674824 CTCTGAACAAAATTATTATCCAGCATC 57.325 33.333 0.00 0.00 0.00 3.91
7152 11418 9.412460 TCTCTGAACAAAATTATTATCCAGCAT 57.588 29.630 0.00 0.00 0.00 3.79
7153 11419 8.677300 GTCTCTGAACAAAATTATTATCCAGCA 58.323 33.333 0.00 0.00 0.00 4.41
7154 11420 8.131731 GGTCTCTGAACAAAATTATTATCCAGC 58.868 37.037 0.00 0.00 0.00 4.85
7155 11421 8.624776 GGGTCTCTGAACAAAATTATTATCCAG 58.375 37.037 0.00 0.00 0.00 3.86
7156 11422 8.112822 TGGGTCTCTGAACAAAATTATTATCCA 58.887 33.333 0.00 0.00 0.00 3.41
7157 11423 8.406297 GTGGGTCTCTGAACAAAATTATTATCC 58.594 37.037 0.00 0.00 0.00 2.59
7158 11424 8.122952 CGTGGGTCTCTGAACAAAATTATTATC 58.877 37.037 0.00 0.00 0.00 1.75
7159 11425 7.610305 ACGTGGGTCTCTGAACAAAATTATTAT 59.390 33.333 0.00 0.00 0.00 1.28
7182 11448 7.065120 ACTGAGTATAGGATACAGAGTACGT 57.935 40.000 0.00 0.00 41.41 3.57
7232 11503 8.812513 ATGATTTCACATGTAAAGGAAGATGA 57.187 30.769 0.00 0.00 0.00 2.92
7233 11504 9.512435 GAATGATTTCACATGTAAAGGAAGATG 57.488 33.333 0.00 0.00 0.00 2.90
7234 11505 9.246670 TGAATGATTTCACATGTAAAGGAAGAT 57.753 29.630 0.00 0.00 36.94 2.40
7235 11506 8.634335 TGAATGATTTCACATGTAAAGGAAGA 57.366 30.769 0.00 0.00 36.94 2.87
7236 11507 9.695526 TTTGAATGATTTCACATGTAAAGGAAG 57.304 29.630 0.00 0.00 41.50 3.46
7261 11532 3.807553 CTGGAATGCAGGGTTTGTTTTT 58.192 40.909 0.00 0.00 0.00 1.94
7262 11533 2.485302 GCTGGAATGCAGGGTTTGTTTT 60.485 45.455 3.49 0.00 0.00 2.43
7263 11534 1.070601 GCTGGAATGCAGGGTTTGTTT 59.929 47.619 3.49 0.00 0.00 2.83
7264 11535 0.681175 GCTGGAATGCAGGGTTTGTT 59.319 50.000 3.49 0.00 0.00 2.83
7265 11536 0.469705 TGCTGGAATGCAGGGTTTGT 60.470 50.000 3.49 0.00 38.12 2.83
7266 11537 2.353858 TGCTGGAATGCAGGGTTTG 58.646 52.632 3.49 0.00 38.12 2.93
7267 11538 4.950200 TGCTGGAATGCAGGGTTT 57.050 50.000 3.49 0.00 38.12 3.27
7273 11544 1.908344 TGTTAAGCTGCTGGAATGCA 58.092 45.000 1.35 0.00 41.05 3.96
7274 11545 2.030007 TGTTGTTAAGCTGCTGGAATGC 60.030 45.455 1.35 0.00 0.00 3.56
7275 11546 3.921119 TGTTGTTAAGCTGCTGGAATG 57.079 42.857 1.35 0.00 0.00 2.67
7276 11547 4.342092 AGTTTGTTGTTAAGCTGCTGGAAT 59.658 37.500 1.35 0.00 0.00 3.01
7277 11548 3.699038 AGTTTGTTGTTAAGCTGCTGGAA 59.301 39.130 1.35 0.00 0.00 3.53
7278 11549 3.287222 AGTTTGTTGTTAAGCTGCTGGA 58.713 40.909 1.35 0.00 0.00 3.86
7279 11550 3.715628 AGTTTGTTGTTAAGCTGCTGG 57.284 42.857 1.35 0.00 0.00 4.85
7280 11551 6.437928 TGATTAGTTTGTTGTTAAGCTGCTG 58.562 36.000 1.35 0.00 0.00 4.41
7281 11552 6.633500 TGATTAGTTTGTTGTTAAGCTGCT 57.367 33.333 0.00 0.00 0.00 4.24
7282 11553 7.308435 AGATGATTAGTTTGTTGTTAAGCTGC 58.692 34.615 0.00 0.00 0.00 5.25
7283 11554 7.689812 CGAGATGATTAGTTTGTTGTTAAGCTG 59.310 37.037 0.00 0.00 0.00 4.24
7284 11555 7.602644 TCGAGATGATTAGTTTGTTGTTAAGCT 59.397 33.333 0.00 0.00 0.00 3.74
7285 11556 7.739295 TCGAGATGATTAGTTTGTTGTTAAGC 58.261 34.615 0.00 0.00 0.00 3.09
7286 11557 9.746711 CTTCGAGATGATTAGTTTGTTGTTAAG 57.253 33.333 0.00 0.00 0.00 1.85
7287 11558 8.227791 GCTTCGAGATGATTAGTTTGTTGTTAA 58.772 33.333 0.00 0.00 0.00 2.01
7288 11559 7.739295 GCTTCGAGATGATTAGTTTGTTGTTA 58.261 34.615 0.00 0.00 0.00 2.41
7289 11560 6.603095 GCTTCGAGATGATTAGTTTGTTGTT 58.397 36.000 0.00 0.00 0.00 2.83
7290 11561 6.170675 GCTTCGAGATGATTAGTTTGTTGT 57.829 37.500 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.