AutoCloner

Multiple sequence alignment - TraesCS5D01G387200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G387200	chr5D	100.000	3158	0	0	1	3158	456750111	456753268	0.000000e+00	5832
1	TraesCS5D01G387200	chr5D	81.591	440	73	8	240	674	538625534	538625970	1.080000e-94	357
2	TraesCS5D01G387200	chr5D	75.817	459	100	10	1666	2117	495031178	495030724	4.100000e-54	222
3	TraesCS5D01G387200	chr5A	93.609	2222	125	7	1	2221	574783670	574785875	0.000000e+00	3301
4	TraesCS5D01G387200	chr5A	94.184	619	15	13	2250	2859	574785878	574786484	0.000000e+00	924
5	TraesCS5D01G387200	chr5A	74.672	458	107	8	1666	2117	619098382	619097928	8.940000e-46	195
6	TraesCS5D01G387200	chr5B	96.071	2036	51	11	774	2794	558686151	558688172	0.000000e+00	3290
7	TraesCS5D01G387200	chr5B	79.058	764	129	19	15	753	558684998	558685755	2.190000e-136	496
8	TraesCS5D01G387200	chr5B	80.638	439	79	6	240	674	679666359	679666795	5.050000e-88	335
9	TraesCS5D01G387200	chr5B	79.727	439	84	5	240	674	496150818	496150381	2.360000e-81	313
10	TraesCS5D01G387200	chr5B	90.155	193	16	3	2968	3158	55188553	55188362	6.760000e-62	248
11	TraesCS5D01G387200	chr5B	89.418	189	17	3	2973	3158	597103273	597103461	5.270000e-58	235
12	TraesCS5D01G387200	chr5B	92.308	117	8	1	2867	2982	558688181	558688297	7.010000e-37	165
13	TraesCS5D01G387200	chr2D	82.313	441	70	6	240	674	606150111	606149673	2.970000e-100	375
14	TraesCS5D01G387200	chr2D	73.538	975	195	51	1193	2140	112866034	112865096	2.360000e-81	313
15	TraesCS5D01G387200	chr2D	79.452	438	85	5	240	674	66864569	66864134	3.960000e-79	305
16	TraesCS5D01G387200	chr2B	81.093	439	79	4	240	674	636878025	636877587	6.480000e-92	348
17	TraesCS5D01G387200	chr2A	73.998	973	194	46	1193	2140	114301374	114300436	1.080000e-89	340
18	TraesCS5D01G387200	chr2A	90.761	184	14	3	2977	3158	768980455	768980637	3.150000e-60	243
19	TraesCS5D01G387200	chr1D	79.727	439	85	4	240	674	409762676	409762238	6.580000e-82	315
20	TraesCS5D01G387200	chr1D	92.222	180	11	3	2982	3158	80967827	80968006	5.230000e-63	252
21	TraesCS5D01G387200	chr1D	90.811	185	13	4	2977	3158	462904475	462904658	8.750000e-61	244
22	TraesCS5D01G387200	chr1D	90.270	185	14	4	2977	3158	462933229	462933412	4.070000e-59	239
23	TraesCS5D01G387200	chr1D	89.730	185	15	4	2977	3158	462896783	462896966	1.890000e-57	233
24	TraesCS5D01G387200	chr1D	89.730	185	15	4	2977	3158	462907014	462907197	1.890000e-57	233
25	TraesCS5D01G387200	chr3D	91.429	175	13	2	2981	3153	549724767	549724593	4.070000e-59	239

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G387200	chr5D	456750111	456753268	3157	False	5832.0	5832	100.000000	1	3158	1	chr5D.!!$F1	3157
1	TraesCS5D01G387200	chr5A	574783670	574786484	2814	False	2112.5	3301	93.896500	1	2859	2	chr5A.!!$F1	2858
2	TraesCS5D01G387200	chr5B	558684998	558688297	3299	False	1317.0	3290	89.145667	15	2982	3	chr5B.!!$F3	2967
3	TraesCS5D01G387200	chr2D	112865096	112866034	938	True	313.0	313	73.538000	1193	2140	1	chr2D.!!$R2	947
4	TraesCS5D01G387200	chr2A	114300436	114301374	938	True	340.0	340	73.998000	1193	2140	1	chr2A.!!$R1	947
5	TraesCS5D01G387200	chr1D	462904475	462907197	2722	False	238.5	244	90.270500	2977	3158	2	chr1D.!!$F4	181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
29	30	0.320421	GGCGGCTTGTTCTAGTGACA	60.32	55.0	0.0	0.0	0.00	3.58	F
314	322	0.469892	TGAGCAGAGGTGTGTCTCCA	60.47	55.0	0.0	0.0	34.46	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1188	1594	0.740868	CGGTGATGACGTGCTTCCAT	60.741	55.0	0.00	0.00	0.00	3.41	R
2217	2727	0.941542	CCACTAACACCAACCACGTG	59.058	55.0	9.08	9.08	37.26	4.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	2.280552	ACTCCGGCGGCTTGTTCTA	61.281	57.895	23.83	0.00	0.00	2.10
29	30	0.320421	GGCGGCTTGTTCTAGTGACA	60.320	55.000	0.00	0.00	0.00	3.58
39	40	7.497249	GGCTTGTTCTAGTGACAATAATGATCT	59.503	37.037	12.53	0.00	0.00	2.75
60	61	7.398618	TGATCTCTTGATAGTTCAAAGACCTCT	59.601	37.037	0.00	0.00	41.22	3.69
294	301	1.158484	CGTCTAGCATCGTCGGAGGA	61.158	60.000	2.53	2.53	0.00	3.71
297	304	1.202770	TCTAGCATCGTCGGAGGATGA	60.203	52.381	33.15	18.55	41.57	2.92
300	307	1.735973	CATCGTCGGAGGATGAGCA	59.264	57.895	27.95	0.00	41.57	4.26
314	322	0.469892	TGAGCAGAGGTGTGTCTCCA	60.470	55.000	0.00	0.00	34.46	3.86
315	323	0.901124	GAGCAGAGGTGTGTCTCCAT	59.099	55.000	0.00	0.00	34.46	3.41
323	331	1.202463	GGTGTGTCTCCATGGATCTCG	60.202	57.143	16.63	3.29	0.00	4.04
324	332	1.478510	GTGTGTCTCCATGGATCTCGT	59.521	52.381	16.63	0.00	0.00	4.18
339	347	2.380941	TCTCGTGGGATTTGATCGGTA	58.619	47.619	0.00	0.00	0.00	4.02
356	364	1.136500	GGTACTGGTCTTCGGTGGATC	59.864	57.143	0.00	0.00	36.22	3.36
412	421	6.011981	TGGGTGTTTATAGGTTTGATCCTTCT	60.012	38.462	0.00	0.00	38.86	2.85
449	459	8.918202	TTATTCATAGATGATGGTTGTTACCC	57.082	34.615	0.00	0.00	36.64	3.69
450	460	4.956085	TCATAGATGATGGTTGTTACCCG	58.044	43.478	0.00	0.00	44.35	5.28
454	464	0.766131	TGATGGTTGTTACCCGGTGT	59.234	50.000	0.00	0.00	44.35	4.16
456	466	0.766131	ATGGTTGTTACCCGGTGTGA	59.234	50.000	0.00	0.00	44.35	3.58
537	547	3.239627	TTCCGGTGAGGGAGGAGCT	62.240	63.158	0.00	0.00	41.52	4.09
567	577	2.048222	CGCCTTCAACTCGCTCCA	60.048	61.111	0.00	0.00	0.00	3.86
568	578	1.667830	CGCCTTCAACTCGCTCCAA	60.668	57.895	0.00	0.00	0.00	3.53
570	580	1.739035	CGCCTTCAACTCGCTCCAATA	60.739	52.381	0.00	0.00	0.00	1.90
574	584	4.003648	CCTTCAACTCGCTCCAATACTTT	58.996	43.478	0.00	0.00	0.00	2.66
582	592	2.222508	CGCTCCAATACTTTTGACGTCG	60.223	50.000	11.62	0.00	0.00	5.12
597	607	3.066190	TCGCTAGGTGGTGGACGG	61.066	66.667	0.00	0.00	0.00	4.79
641	651	5.483685	TCTATGGTGTTCTTTGTACTGCT	57.516	39.130	0.00	0.00	0.00	4.24
684	701	3.201708	AGGAAGTTTCTCCTGCATATGCT	59.798	43.478	27.13	3.84	44.56	3.79
714	738	5.309638	TGGAGTATTTTGGTGTTCGAATGA	58.690	37.500	0.00	0.00	0.00	2.57
773	1179	4.079970	TGGCATCCACGTACCAATTAAAA	58.920	39.130	0.00	0.00	0.00	1.52
881	1287	1.849039	CATCTTCTCCAACCCCCTCAT	59.151	52.381	0.00	0.00	0.00	2.90
884	1290	0.919289	TTCTCCAACCCCCTCATCCC	60.919	60.000	0.00	0.00	0.00	3.85
997	1403	3.356529	AGGCACCCAAAATCTAGACAG	57.643	47.619	0.00	0.00	0.00	3.51
1024	1430	1.261238	ACCCCTCTCGAAGCCAAGAG	61.261	60.000	0.00	0.00	39.00	2.85
1749	2155	2.742372	GACATGGCCGACACGCTT	60.742	61.111	0.00	0.00	0.00	4.68
1962	2440	1.381928	CCATCTGCTTGCTGCCGAAT	61.382	55.000	0.00	0.00	38.36	3.34
2231	2741	3.883180	GCGCACGTGGTTGGTGTT	61.883	61.111	18.88	0.00	37.70	3.32
2232	2742	2.535788	GCGCACGTGGTTGGTGTTA	61.536	57.895	18.88	0.00	37.70	2.41
2233	2743	1.567537	CGCACGTGGTTGGTGTTAG	59.432	57.895	18.88	0.00	37.70	2.34
2234	2744	1.155424	CGCACGTGGTTGGTGTTAGT	61.155	55.000	18.88	0.00	37.70	2.24
2235	2745	0.306533	GCACGTGGTTGGTGTTAGTG	59.693	55.000	18.88	0.00	37.70	2.74
2236	2746	0.941542	CACGTGGTTGGTGTTAGTGG	59.058	55.000	7.95	0.00	0.00	4.00
2237	2747	0.542805	ACGTGGTTGGTGTTAGTGGT	59.457	50.000	0.00	0.00	0.00	4.16
2238	2748	1.761784	ACGTGGTTGGTGTTAGTGGTA	59.238	47.619	0.00	0.00	0.00	3.25
2239	2749	2.137523	CGTGGTTGGTGTTAGTGGTAC	58.862	52.381	0.00	0.00	0.00	3.34
2240	2750	2.483363	CGTGGTTGGTGTTAGTGGTACA	60.483	50.000	0.00	0.00	0.00	2.90
2260	2770	7.941795	GTACACGTACCATAATTCTAAGCAT	57.058	36.000	0.00	0.00	0.00	3.79
2295	2805	1.411977	AGGAGCGGTGATCATCAAGAG	59.588	52.381	6.80	0.00	0.00	2.85
2307	2817	7.116090	GGTGATCATCAAGAGTCATCGAATTAG	59.884	40.741	0.00	0.00	0.00	1.73
2358	2868	8.714179	AGTTTCGATTATTAATTTGTGTCGTCA	58.286	29.630	0.00	0.00	0.00	4.35
2550	3064	9.155053	CAATAAAGTCACTTTACGACTGTTTTC	57.845	33.333	12.33	0.00	42.90	2.29
2574	3088	5.570589	CCGATGCACATTCTTTTCTTCTTTC	59.429	40.000	0.00	0.00	0.00	2.62
2689	3206	0.659427	CAGGTGCTGCATCGTATTGG	59.341	55.000	5.27	0.00	0.00	3.16
2696	3213	1.265095	CTGCATCGTATTGGACATGGC	59.735	52.381	0.00	0.00	0.00	4.40
2760	3281	6.102897	TCCACAACCAAAGAAACTTCAAAA	57.897	33.333	0.00	0.00	0.00	2.44
2765	3286	3.454447	ACCAAAGAAACTTCAAAAGGGGG	59.546	43.478	0.00	0.00	0.00	5.40
2766	3287	3.454447	CCAAAGAAACTTCAAAAGGGGGT	59.546	43.478	0.00	0.00	0.00	4.95
2814	3335	3.198417	GGGGTACTCCGGTTGAAAAGATA	59.802	47.826	0.00	0.00	36.01	1.98
2859	3381	9.672086	TGTAAAAATATAAAGAAGTGTGTGTGC	57.328	29.630	0.00	0.00	0.00	4.57
2860	3382	9.672086	GTAAAAATATAAAGAAGTGTGTGTGCA	57.328	29.630	0.00	0.00	0.00	4.57
2862	3384	9.593134	AAAAATATAAAGAAGTGTGTGTGCAAA	57.407	25.926	0.00	0.00	0.00	3.68
2863	3385	9.593134	AAAATATAAAGAAGTGTGTGTGCAAAA	57.407	25.926	0.00	0.00	0.00	2.44
2864	3386	9.593134	AAATATAAAGAAGTGTGTGTGCAAAAA	57.407	25.926	0.00	0.00	0.00	1.94
2865	3387	9.762933	AATATAAAGAAGTGTGTGTGCAAAAAT	57.237	25.926	0.00	0.00	0.00	1.82
2868	3390	9.762933	ATAAAGAAGTGTGTGTGCAAAAATATT	57.237	25.926	0.00	0.00	0.00	1.28
2869	3391	7.467557	AAGAAGTGTGTGTGCAAAAATATTG	57.532	32.000	0.00	0.00	0.00	1.90
2870	3392	6.804677	AGAAGTGTGTGTGCAAAAATATTGA	58.195	32.000	0.00	0.00	0.00	2.57
2871	3393	7.264221	AGAAGTGTGTGTGCAAAAATATTGAA	58.736	30.769	0.00	0.00	0.00	2.69
2872	3394	7.436080	AGAAGTGTGTGTGCAAAAATATTGAAG	59.564	33.333	0.00	0.00	0.00	3.02
2876	3398	8.638565	GTGTGTGTGCAAAAATATTGAAGTATC	58.361	33.333	0.00	0.00	0.00	2.24
2918	3441	4.098960	TGGACGAGGGAGTACATTAATGTC	59.901	45.833	24.00	15.23	41.97	3.06
2930	3453	7.432869	AGTACATTAATGTCAAAAAGCTTGCA	58.567	30.769	24.00	0.00	41.97	4.08
2933	3456	2.894763	ATGTCAAAAAGCTTGCAGCA	57.105	40.000	0.00	0.00	45.56	4.41
3036	3559	4.381718	CCGAGAGTTTAGAAATCGTCCCTT	60.382	45.833	0.00	0.00	0.00	3.95
3042	3565	6.404708	AGTTTAGAAATCGTCCCTTAACTCC	58.595	40.000	0.00	0.00	27.57	3.85
3051	3574	2.026542	GTCCCTTAACTCCAAACCGGAT	60.027	50.000	9.46	0.00	45.19	4.18
3120	3643	3.142124	GCTTCGGGCGGTTTTAGTA	57.858	52.632	0.00	0.00	0.00	1.82
3121	3644	1.004595	GCTTCGGGCGGTTTTAGTAG	58.995	55.000	0.00	0.00	0.00	2.57
3122	3645	1.673923	GCTTCGGGCGGTTTTAGTAGT	60.674	52.381	0.00	0.00	0.00	2.73
3137	3837	8.843262	GGTTTTAGTAGTGGTGAACAGTAATTT	58.157	33.333	0.00	0.00	36.77	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	1.519455	CTAGAACAAGCCGCCGGAG	60.519	63.158	7.68	0.00	0.00	4.63
7	8	2.280552	ACTAGAACAAGCCGCCGGA	61.281	57.895	7.68	0.00	0.00	5.14
12	13	5.580691	TCATTATTGTCACTAGAACAAGCCG	59.419	40.000	16.54	8.56	0.00	5.52
39	40	8.367660	ACATAGAGGTCTTTGAACTATCAAGA	57.632	34.615	4.66	0.00	45.82	3.02
79	80	8.800370	AATTGAAAGTACAAAACACCCAAAAT	57.200	26.923	0.00	0.00	33.44	1.82
268	275	2.368105	CGATGCTAGACGCGCCATC	61.368	63.158	5.73	6.92	43.27	3.51
273	280	2.722548	CCGACGATGCTAGACGCG	60.723	66.667	3.53	3.53	43.27	6.01
294	301	0.901124	GGAGACACACCTCTGCTCAT	59.099	55.000	0.00	0.00	33.79	2.90
297	304	4.627394	TGGAGACACACCTCTGCT	57.373	55.556	0.00	0.00	33.40	4.24
314	322	3.555795	CGATCAAATCCCACGAGATCCAT	60.556	47.826	0.00	0.00	33.33	3.41
315	323	2.224042	CGATCAAATCCCACGAGATCCA	60.224	50.000	0.00	0.00	33.33	3.41
323	331	2.093128	ACCAGTACCGATCAAATCCCAC	60.093	50.000	0.00	0.00	0.00	4.61
324	332	2.169769	GACCAGTACCGATCAAATCCCA	59.830	50.000	0.00	0.00	0.00	4.37
339	347	0.898320	CAGATCCACCGAAGACCAGT	59.102	55.000	0.00	0.00	0.00	4.00
356	364	6.615088	CACAAATAAGACTGGATCCAAACAG	58.385	40.000	17.00	6.53	40.48	3.16
419	428	9.685276	AACAACCATCATCTATGAATAAAGTCA	57.315	29.630	0.00	0.00	40.69	3.41
432	441	1.913419	ACCGGGTAACAACCATCATCT	59.087	47.619	6.32	0.00	39.74	2.90
449	459	0.462581	CCCATGAGACCATCACACCG	60.463	60.000	0.00	0.00	41.91	4.94
450	460	0.107017	CCCCATGAGACCATCACACC	60.107	60.000	0.00	0.00	41.91	4.16
454	464	0.920763	AAGGCCCCATGAGACCATCA	60.921	55.000	0.00	0.00	43.70	3.07
456	466	1.143813	CTAAGGCCCCATGAGACCAT	58.856	55.000	0.00	0.00	0.00	3.55
550	560	1.021390	ATTGGAGCGAGTTGAAGGCG	61.021	55.000	0.00	0.00	0.00	5.52
557	567	3.432252	CGTCAAAAGTATTGGAGCGAGTT	59.568	43.478	0.00	0.00	0.00	3.01
567	577	3.924686	CACCTAGCGACGTCAAAAGTATT	59.075	43.478	17.16	0.00	0.00	1.89
568	578	3.508762	CACCTAGCGACGTCAAAAGTAT	58.491	45.455	17.16	0.00	0.00	2.12
570	580	1.604693	CCACCTAGCGACGTCAAAAGT	60.605	52.381	17.16	2.88	0.00	2.66
574	584	1.287815	CACCACCTAGCGACGTCAA	59.712	57.895	17.16	0.00	0.00	3.18
582	592	1.043673	AGATCCGTCCACCACCTAGC	61.044	60.000	0.00	0.00	0.00	3.42
622	632	5.804639	TCATAGCAGTACAAAGAACACCAT	58.195	37.500	0.00	0.00	0.00	3.55
675	685	3.156293	ACTCCAACAACAAGCATATGCA	58.844	40.909	28.62	3.75	45.16	3.96
684	701	5.923733	ACACCAAAATACTCCAACAACAA	57.076	34.783	0.00	0.00	0.00	2.83
881	1287	7.421617	GGGTGGTTATATATACTGGTTTTGGGA	60.422	40.741	0.00	0.00	0.00	4.37
884	1290	7.218614	TCGGGTGGTTATATATACTGGTTTTG	58.781	38.462	0.00	0.00	0.00	2.44
997	1403	2.622436	CTTCGAGAGGGGTGACATTTC	58.378	52.381	0.00	0.00	0.00	2.17
1024	1430	1.744741	GGAGAGCTCTTGTGGCTGC	60.745	63.158	19.36	1.62	40.40	5.25
1188	1594	0.740868	CGGTGATGACGTGCTTCCAT	60.741	55.000	0.00	0.00	0.00	3.41
1749	2155	4.024717	AGCAGGATGAGCTCGACA	57.975	55.556	9.64	0.00	38.01	4.35
2161	2644	2.745884	TCCATGCACGCGGAAAGG	60.746	61.111	12.47	5.74	0.00	3.11
2217	2727	0.941542	CCACTAACACCAACCACGTG	59.058	55.000	9.08	9.08	37.26	4.49
2221	2731	2.483363	CGTGTACCACTAACACCAACCA	60.483	50.000	1.11	0.00	43.46	3.67
2222	2732	2.137523	CGTGTACCACTAACACCAACC	58.862	52.381	1.11	0.00	43.46	3.77
2223	2733	2.825205	ACGTGTACCACTAACACCAAC	58.175	47.619	0.00	0.00	43.46	3.77
2224	2734	3.976169	GTACGTGTACCACTAACACCAA	58.024	45.455	0.00	0.00	43.46	3.67
2225	2735	3.641437	GTACGTGTACCACTAACACCA	57.359	47.619	0.00	0.00	43.46	4.17
2236	2746	7.650504	TGATGCTTAGAATTATGGTACGTGTAC	59.349	37.037	0.00	1.49	35.40	2.90
2237	2747	7.718525	TGATGCTTAGAATTATGGTACGTGTA	58.281	34.615	0.00	0.00	0.00	2.90
2238	2748	6.578944	TGATGCTTAGAATTATGGTACGTGT	58.421	36.000	0.00	0.00	0.00	4.49
2239	2749	7.658179	ATGATGCTTAGAATTATGGTACGTG	57.342	36.000	0.00	0.00	0.00	4.49
2240	2750	8.559536	CAAATGATGCTTAGAATTATGGTACGT	58.440	33.333	0.00	0.00	0.00	3.57
2241	2751	8.559536	ACAAATGATGCTTAGAATTATGGTACG	58.440	33.333	0.00	0.00	0.00	3.67
2242	2752	9.669353	CACAAATGATGCTTAGAATTATGGTAC	57.331	33.333	0.00	0.00	0.00	3.34
2243	2753	8.849168	CCACAAATGATGCTTAGAATTATGGTA	58.151	33.333	0.00	0.00	0.00	3.25
2244	2754	7.201938	CCCACAAATGATGCTTAGAATTATGGT	60.202	37.037	0.00	0.00	0.00	3.55
2245	2755	7.149973	CCCACAAATGATGCTTAGAATTATGG	58.850	38.462	0.00	0.00	0.00	2.74
2246	2756	7.149973	CCCCACAAATGATGCTTAGAATTATG	58.850	38.462	0.00	0.00	0.00	1.90
2247	2757	6.840705	ACCCCACAAATGATGCTTAGAATTAT	59.159	34.615	0.00	0.00	0.00	1.28
2248	2758	6.194235	ACCCCACAAATGATGCTTAGAATTA	58.806	36.000	0.00	0.00	0.00	1.40
2259	2769	3.365472	GCTCCTAAACCCCACAAATGAT	58.635	45.455	0.00	0.00	0.00	2.45
2260	2770	2.802719	GCTCCTAAACCCCACAAATGA	58.197	47.619	0.00	0.00	0.00	2.57
2295	2805	4.318121	GCGACCATGAACTAATTCGATGAC	60.318	45.833	0.00	0.00	37.69	3.06
2307	2817	1.737236	TGTGCATTAGCGACCATGAAC	59.263	47.619	0.00	0.00	46.23	3.18
2374	2884	0.259065	TACCTTGCACCCACCAAACA	59.741	50.000	0.00	0.00	0.00	2.83
2550	3064	4.691860	AGAAGAAAAGAATGTGCATCGG	57.308	40.909	0.00	0.00	0.00	4.18
2714	3232	7.288389	TGGATAGTTCCTATAGCGGTTCTTTTA	59.712	37.037	0.00	0.00	43.07	1.52
2749	3267	6.229936	AGTTTTACCCCCTTTTGAAGTTTC	57.770	37.500	0.00	0.00	0.00	2.78
2760	3281	7.069085	GTGAAAGTTTTCTTAGTTTTACCCCCT	59.931	37.037	6.21	0.00	39.48	4.79
2852	3374	7.812191	TGGATACTTCAATATTTTTGCACACAC	59.188	33.333	0.00	0.00	37.61	3.82
2876	3398	7.309177	TCGTCCACAAATATAACATGTTTTGG	58.691	34.615	17.78	11.49	34.23	3.28
2885	3407	5.019785	ACTCCCTCGTCCACAAATATAAC	57.980	43.478	0.00	0.00	0.00	1.89
2897	3419	5.258456	TGACATTAATGTACTCCCTCGTC	57.742	43.478	20.83	5.49	41.95	4.20
2982	3505	6.453092	TCGAGGACGAAAAATATCTTATCCC	58.547	40.000	0.00	0.00	45.74	3.85
3042	3565	2.417586	GGGACGAAAACTATCCGGTTTG	59.582	50.000	0.00	0.00	39.08	2.93
3051	3574	5.988310	TGATAGTTGAGGGACGAAAACTA	57.012	39.130	0.00	0.00	38.93	2.24
3088	3611	4.473520	AAGCGGCATGAGGGACGG	62.474	66.667	1.45	0.00	40.44	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.