Multiple sequence alignment - TraesCS5D01G386100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G386100 chr5D 100.000 6056 0 0 1 6056 455817112 455811057 0.000000e+00 11184
1 TraesCS5D01G386100 chr5D 98.507 201 3 0 5856 6056 12309767 12309567 7.470000e-94 355
2 TraesCS5D01G386100 chr5D 94.554 202 9 2 5856 6056 87195423 87195223 1.640000e-80 311
3 TraesCS5D01G386100 chr5D 84.539 304 41 6 8 308 383301382 383301082 4.590000e-76 296
4 TraesCS5D01G386100 chr5D 87.845 181 16 4 334 508 54778693 54778513 2.210000e-49 207
5 TraesCS5D01G386100 chr5B 94.547 5171 200 38 740 5853 557806750 557801605 0.000000e+00 7912
6 TraesCS5D01G386100 chr5B 92.519 401 25 4 334 731 557807129 557806731 2.450000e-158 569
7 TraesCS5D01G386100 chr5B 93.220 236 16 0 1 236 557807378 557807143 1.250000e-91 348
8 TraesCS5D01G386100 chr5B 96.500 200 7 0 5853 6052 352395431 352395630 1.260000e-86 331
9 TraesCS5D01G386100 chr5B 96.020 201 8 0 5856 6056 352392730 352392530 1.630000e-85 327
10 TraesCS5D01G386100 chr5A 94.468 1898 61 17 2879 4764 573811660 573813525 0.000000e+00 2883
11 TraesCS5D01G386100 chr5A 95.362 1229 29 9 820 2039 573809242 573810451 0.000000e+00 1929
12 TraesCS5D01G386100 chr5A 93.853 1090 46 8 4782 5853 573813609 573814695 0.000000e+00 1622
13 TraesCS5D01G386100 chr5A 93.808 856 34 9 2037 2877 573810647 573811498 0.000000e+00 1269
14 TraesCS5D01G386100 chr1D 97.512 201 5 0 5856 6056 303022788 303022588 1.620000e-90 344
15 TraesCS5D01G386100 chr3A 96.517 201 7 0 5856 6056 323173314 323173114 3.500000e-87 333
16 TraesCS5D01G386100 chr3A 86.740 181 18 3 334 508 111880710 111880530 4.790000e-46 196
17 TraesCS5D01G386100 chr3A 86.740 181 18 4 334 508 609931959 609931779 4.790000e-46 196
18 TraesCS5D01G386100 chr7D 85.526 304 44 0 5 308 133887085 133887388 9.800000e-83 318
19 TraesCS5D01G386100 chr7D 93.137 204 14 0 5853 6056 471539105 471539308 3.550000e-77 300
20 TraesCS5D01G386100 chr6B 94.527 201 11 0 5856 6056 144947333 144947133 1.640000e-80 311
21 TraesCS5D01G386100 chr2B 85.065 308 42 4 3 308 18281142 18281447 1.640000e-80 311
22 TraesCS5D01G386100 chr2B 84.797 296 41 4 15 308 798752814 798752521 1.650000e-75 294
23 TraesCS5D01G386100 chr2B 84.039 307 43 6 5 308 453133923 453134226 2.140000e-74 291
24 TraesCS5D01G386100 chr3B 94.416 197 11 0 5856 6052 416516782 416516586 2.740000e-78 303
25 TraesCS5D01G386100 chr3B 88.398 181 15 4 334 508 723523985 723523805 4.750000e-51 213
26 TraesCS5D01G386100 chr3B 87.293 181 17 3 334 508 818342626 818342806 1.030000e-47 202
27 TraesCS5D01G386100 chr6A 85.172 290 42 1 20 308 592431423 592431712 4.590000e-76 296
28 TraesCS5D01G386100 chr6A 86.559 186 19 4 334 513 14178137 14178322 3.700000e-47 200
29 TraesCS5D01G386100 chr2D 84.262 305 43 4 5 308 619938701 619938401 5.940000e-75 292
30 TraesCS5D01G386100 chr6D 84.039 307 43 6 5 308 87385817 87386120 2.140000e-74 291
31 TraesCS5D01G386100 chr4B 88.398 181 15 2 334 508 28633178 28632998 4.750000e-51 213
32 TraesCS5D01G386100 chr4D 87.222 180 18 2 334 508 421546408 421546587 3.700000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G386100 chr5D 455811057 455817112 6055 True 11184.00 11184 100.000000 1 6056 1 chr5D.!!$R5 6055
1 TraesCS5D01G386100 chr5B 557801605 557807378 5773 True 2943.00 7912 93.428667 1 5853 3 chr5B.!!$R2 5852
2 TraesCS5D01G386100 chr5A 573809242 573814695 5453 False 1925.75 2883 94.372750 820 5853 4 chr5A.!!$F1 5033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.028902 ACAAGTTTTGCCGAAGACGC 59.971 50.000 0.00 0.00 38.29 5.19 F
1653 1669 0.247814 CCTCTGCTGCGCAATTTACG 60.248 55.000 13.05 0.00 38.41 3.18 F
2309 2523 2.489040 TCTGCATGCCATTGCTGAG 58.511 52.632 16.68 2.89 43.09 3.35 F
3061 3460 1.073763 TGATGCCAAACACAGCCTAGT 59.926 47.619 0.00 0.00 0.00 2.57 F
4823 5293 1.180029 GACATTTGGACATGCCTGCT 58.820 50.000 7.54 0.00 37.63 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2312 1.414919 AGTGTTAAGCAACCACTCGGA 59.585 47.619 0.00 0.00 33.41 4.55 R
2712 2941 1.692519 ACGCAAAAGGTCCTCTACTGT 59.307 47.619 0.00 0.00 0.00 3.55 R
4098 4498 0.257039 ACTGGGGAGAATGGCATGAC 59.743 55.000 0.00 0.00 0.00 3.06 R
4905 5377 2.285834 GGAAAATGATGTGACGCTAGCG 60.286 50.000 34.27 34.27 46.03 4.26 R
6008 6509 0.099436 GCCGCTTGAAAGATTCGCAT 59.901 50.000 0.00 0.00 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.709147 CGGCGGCTTCTTGAAGATGG 61.709 60.000 13.87 1.57 0.00 3.51
56 57 5.449725 GCTTCTTGAAGATGGAATAAGGTGC 60.450 44.000 13.87 0.00 0.00 5.01
62 63 0.474184 ATGGAATAAGGTGCTCCCCG 59.526 55.000 0.00 0.00 0.00 5.73
127 128 0.034059 GTGGAGGTGTGTCTCTGGTG 59.966 60.000 0.00 0.00 34.39 4.17
131 132 2.039084 GGAGGTGTGTCTCTGGTGAATT 59.961 50.000 0.00 0.00 34.39 2.17
134 135 5.491982 GAGGTGTGTCTCTGGTGAATTTAT 58.508 41.667 0.00 0.00 0.00 1.40
140 141 7.805071 GTGTGTCTCTGGTGAATTTATCTTTTG 59.195 37.037 0.00 0.00 0.00 2.44
160 161 2.297315 TGTGGATCTGCTCGGATATGTC 59.703 50.000 0.00 0.00 0.00 3.06
174 175 2.245159 TATGTCCGTCGTCCGTCTAT 57.755 50.000 0.00 0.00 33.66 1.98
179 180 2.545526 GTCCGTCGTCCGTCTATATTCA 59.454 50.000 0.00 0.00 33.66 2.57
210 211 7.346698 TCTTCAGGTTGAATCCTTCTGATCTAT 59.653 37.037 0.00 0.00 35.59 1.98
218 219 7.665690 TGAATCCTTCTGATCTATGCTACTTC 58.334 38.462 0.00 0.00 31.61 3.01
242 243 3.657537 GGCGACGATTGTTGTTCTG 57.342 52.632 0.00 0.00 0.00 3.02
243 244 0.165944 GGCGACGATTGTTGTTCTGG 59.834 55.000 0.00 0.00 0.00 3.86
244 245 0.452784 GCGACGATTGTTGTTCTGGC 60.453 55.000 0.00 0.00 0.00 4.85
245 246 0.179250 CGACGATTGTTGTTCTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
246 247 0.452784 GACGATTGTTGTTCTGGCGC 60.453 55.000 0.00 0.00 0.00 6.53
247 248 1.163420 ACGATTGTTGTTCTGGCGCA 61.163 50.000 10.83 0.00 0.00 6.09
248 249 0.725784 CGATTGTTGTTCTGGCGCAC 60.726 55.000 10.83 0.00 0.00 5.34
249 250 0.593128 GATTGTTGTTCTGGCGCACT 59.407 50.000 10.83 0.00 0.00 4.40
250 251 0.311790 ATTGTTGTTCTGGCGCACTG 59.688 50.000 10.83 2.89 0.00 3.66
251 252 0.746204 TTGTTGTTCTGGCGCACTGA 60.746 50.000 10.83 5.52 0.00 3.41
252 253 0.534877 TGTTGTTCTGGCGCACTGAT 60.535 50.000 10.83 0.00 0.00 2.90
253 254 0.166814 GTTGTTCTGGCGCACTGATC 59.833 55.000 10.83 8.10 0.00 2.92
254 255 0.035317 TTGTTCTGGCGCACTGATCT 59.965 50.000 10.83 0.00 0.00 2.75
255 256 0.035317 TGTTCTGGCGCACTGATCTT 59.965 50.000 10.83 0.00 0.00 2.40
256 257 1.275010 TGTTCTGGCGCACTGATCTTA 59.725 47.619 10.83 0.00 0.00 2.10
257 258 2.093500 TGTTCTGGCGCACTGATCTTAT 60.093 45.455 10.83 0.00 0.00 1.73
258 259 2.229675 TCTGGCGCACTGATCTTATG 57.770 50.000 10.83 0.00 0.00 1.90
259 260 1.202568 TCTGGCGCACTGATCTTATGG 60.203 52.381 10.83 0.00 0.00 2.74
260 261 0.179048 TGGCGCACTGATCTTATGGG 60.179 55.000 10.83 0.00 0.00 4.00
261 262 0.886490 GGCGCACTGATCTTATGGGG 60.886 60.000 10.83 0.00 0.00 4.96
262 263 1.510480 GCGCACTGATCTTATGGGGC 61.510 60.000 0.30 0.00 0.00 5.80
263 264 0.886490 CGCACTGATCTTATGGGGCC 60.886 60.000 0.00 0.00 0.00 5.80
264 265 0.475906 GCACTGATCTTATGGGGCCT 59.524 55.000 0.84 0.00 0.00 5.19
265 266 1.133668 GCACTGATCTTATGGGGCCTT 60.134 52.381 0.84 0.00 0.00 4.35
266 267 2.106511 GCACTGATCTTATGGGGCCTTA 59.893 50.000 0.84 0.00 0.00 2.69
267 268 3.245052 GCACTGATCTTATGGGGCCTTAT 60.245 47.826 0.84 0.79 0.00 1.73
268 269 4.583871 CACTGATCTTATGGGGCCTTATC 58.416 47.826 0.84 0.00 0.00 1.75
269 270 4.042062 CACTGATCTTATGGGGCCTTATCA 59.958 45.833 0.84 3.47 0.00 2.15
270 271 4.042187 ACTGATCTTATGGGGCCTTATCAC 59.958 45.833 0.84 0.00 0.00 3.06
271 272 3.007940 TGATCTTATGGGGCCTTATCACG 59.992 47.826 0.84 0.00 0.00 4.35
272 273 2.684943 TCTTATGGGGCCTTATCACGA 58.315 47.619 0.84 0.00 0.00 4.35
273 274 3.248024 TCTTATGGGGCCTTATCACGAT 58.752 45.455 0.84 0.00 0.00 3.73
274 275 3.650942 TCTTATGGGGCCTTATCACGATT 59.349 43.478 0.84 0.00 0.00 3.34
275 276 4.841813 TCTTATGGGGCCTTATCACGATTA 59.158 41.667 0.84 0.00 0.00 1.75
276 277 2.922740 TGGGGCCTTATCACGATTAC 57.077 50.000 0.84 0.00 0.00 1.89
277 278 2.404559 TGGGGCCTTATCACGATTACT 58.595 47.619 0.84 0.00 0.00 2.24
278 279 2.775384 TGGGGCCTTATCACGATTACTT 59.225 45.455 0.84 0.00 0.00 2.24
279 280 3.181458 TGGGGCCTTATCACGATTACTTC 60.181 47.826 0.84 0.00 0.00 3.01
280 281 3.400255 GGGCCTTATCACGATTACTTCC 58.600 50.000 0.84 0.00 0.00 3.46
294 295 5.469421 CGATTACTTCCCGACTGTCTACTAT 59.531 44.000 6.21 0.00 0.00 2.12
295 296 6.648310 CGATTACTTCCCGACTGTCTACTATA 59.352 42.308 6.21 0.00 0.00 1.31
296 297 7.172190 CGATTACTTCCCGACTGTCTACTATAA 59.828 40.741 6.21 0.00 0.00 0.98
297 298 7.559590 TTACTTCCCGACTGTCTACTATAAC 57.440 40.000 6.21 0.00 0.00 1.89
298 299 5.503927 ACTTCCCGACTGTCTACTATAACA 58.496 41.667 6.21 0.00 0.00 2.41
299 300 5.948162 ACTTCCCGACTGTCTACTATAACAA 59.052 40.000 6.21 0.00 0.00 2.83
300 301 6.095160 ACTTCCCGACTGTCTACTATAACAAG 59.905 42.308 6.21 0.00 0.00 3.16
301 302 5.503927 TCCCGACTGTCTACTATAACAAGT 58.496 41.667 6.21 0.00 0.00 3.16
302 303 5.948162 TCCCGACTGTCTACTATAACAAGTT 59.052 40.000 6.21 0.00 0.00 2.66
303 304 6.435277 TCCCGACTGTCTACTATAACAAGTTT 59.565 38.462 6.21 0.00 0.00 2.66
304 305 7.039504 TCCCGACTGTCTACTATAACAAGTTTT 60.040 37.037 6.21 0.00 0.00 2.43
305 306 7.063074 CCCGACTGTCTACTATAACAAGTTTTG 59.937 40.741 6.21 0.00 0.00 2.44
306 307 7.411588 CCGACTGTCTACTATAACAAGTTTTGC 60.412 40.741 6.21 0.00 0.00 3.68
307 308 7.411588 CGACTGTCTACTATAACAAGTTTTGCC 60.412 40.741 6.21 0.00 0.00 4.52
308 309 6.367969 ACTGTCTACTATAACAAGTTTTGCCG 59.632 38.462 0.00 0.00 0.00 5.69
309 310 6.457355 TGTCTACTATAACAAGTTTTGCCGA 58.543 36.000 0.00 0.00 0.00 5.54
310 311 6.930164 TGTCTACTATAACAAGTTTTGCCGAA 59.070 34.615 0.00 0.00 0.00 4.30
311 312 7.117236 TGTCTACTATAACAAGTTTTGCCGAAG 59.883 37.037 0.00 0.00 0.00 3.79
312 313 7.330208 GTCTACTATAACAAGTTTTGCCGAAGA 59.670 37.037 0.00 0.00 0.00 2.87
313 314 6.237313 ACTATAACAAGTTTTGCCGAAGAC 57.763 37.500 0.00 0.00 0.00 3.01
314 315 2.468532 AACAAGTTTTGCCGAAGACG 57.531 45.000 0.00 0.00 39.43 4.18
315 316 0.028902 ACAAGTTTTGCCGAAGACGC 59.971 50.000 0.00 0.00 38.29 5.19
316 317 0.991770 CAAGTTTTGCCGAAGACGCG 60.992 55.000 3.53 3.53 38.29 6.01
317 318 2.711185 AAGTTTTGCCGAAGACGCGC 62.711 55.000 5.73 0.00 38.29 6.86
318 319 2.970324 TTTTGCCGAAGACGCGCT 60.970 55.556 5.73 0.50 36.92 5.92
319 320 1.665282 TTTTGCCGAAGACGCGCTA 60.665 52.632 5.73 0.00 36.92 4.26
320 321 1.222766 TTTTGCCGAAGACGCGCTAA 61.223 50.000 5.73 0.00 36.92 3.09
321 322 1.017177 TTTGCCGAAGACGCGCTAAT 61.017 50.000 5.73 0.00 36.92 1.73
322 323 1.418342 TTGCCGAAGACGCGCTAATC 61.418 55.000 5.73 0.00 36.92 1.75
323 324 1.589196 GCCGAAGACGCGCTAATCT 60.589 57.895 5.73 2.45 38.29 2.40
324 325 1.146358 GCCGAAGACGCGCTAATCTT 61.146 55.000 15.64 15.64 37.88 2.40
325 326 1.862815 GCCGAAGACGCGCTAATCTTA 60.863 52.381 15.67 0.00 35.29 2.10
326 327 2.662700 CCGAAGACGCGCTAATCTTAT 58.337 47.619 15.67 0.00 35.29 1.73
327 328 3.050619 CCGAAGACGCGCTAATCTTATT 58.949 45.455 15.67 0.00 35.29 1.40
328 329 3.119792 CCGAAGACGCGCTAATCTTATTC 59.880 47.826 15.67 0.00 35.29 1.75
329 330 3.181562 CGAAGACGCGCTAATCTTATTCG 60.182 47.826 15.67 5.97 35.29 3.34
330 331 3.620929 AGACGCGCTAATCTTATTCGA 57.379 42.857 5.73 0.00 0.00 3.71
331 332 3.298317 AGACGCGCTAATCTTATTCGAC 58.702 45.455 5.73 0.00 0.00 4.20
332 333 2.041966 ACGCGCTAATCTTATTCGACG 58.958 47.619 5.73 0.00 0.00 5.12
352 353 2.287308 CGAACAAGTTTTGCCGAATCCA 60.287 45.455 0.00 0.00 33.68 3.41
366 367 3.003173 TCCAGTGAGGAAGGGGCG 61.003 66.667 0.00 0.00 45.65 6.13
371 372 0.692419 AGTGAGGAAGGGGCGATGAT 60.692 55.000 0.00 0.00 0.00 2.45
385 386 1.766143 GATGATGGTGGCGCGTCTTC 61.766 60.000 13.81 4.97 0.00 2.87
425 426 0.376502 GTCGTCGCTAGGTGGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
433 434 2.034812 GCTAGGTGGACTACGAATCTGG 59.965 54.545 0.00 0.00 0.00 3.86
474 476 8.791327 TTTCTGATTTGTACTGCTATGATTGA 57.209 30.769 0.00 0.00 0.00 2.57
500 502 7.377398 AGATGAATAGATCAGATGTTTCCTCG 58.623 38.462 0.00 0.00 42.53 4.63
501 503 5.847304 TGAATAGATCAGATGTTTCCTCGG 58.153 41.667 0.00 0.00 33.04 4.63
537 541 6.593770 GGCCTCCTTTGGTTTACATAATTTTG 59.406 38.462 0.00 0.00 0.00 2.44
681 685 4.457834 AAGGAACACTATCTTGGACTCG 57.542 45.455 0.00 0.00 0.00 4.18
684 688 3.427243 GAACACTATCTTGGACTCGACG 58.573 50.000 0.00 0.00 0.00 5.12
687 691 2.422479 CACTATCTTGGACTCGACGGAA 59.578 50.000 0.00 0.00 0.00 4.30
728 732 6.729690 TGAACCAAATGACATCTCCTTTTT 57.270 33.333 0.00 0.00 0.00 1.94
729 733 7.831691 TGAACCAAATGACATCTCCTTTTTA 57.168 32.000 0.00 0.00 0.00 1.52
730 734 8.421249 TGAACCAAATGACATCTCCTTTTTAT 57.579 30.769 0.00 0.00 0.00 1.40
731 735 8.522830 TGAACCAAATGACATCTCCTTTTTATC 58.477 33.333 0.00 0.00 0.00 1.75
732 736 7.410120 ACCAAATGACATCTCCTTTTTATCC 57.590 36.000 0.00 0.00 0.00 2.59
733 737 7.184862 ACCAAATGACATCTCCTTTTTATCCT 58.815 34.615 0.00 0.00 0.00 3.24
734 738 8.336235 ACCAAATGACATCTCCTTTTTATCCTA 58.664 33.333 0.00 0.00 0.00 2.94
735 739 9.189156 CCAAATGACATCTCCTTTTTATCCTAA 57.811 33.333 0.00 0.00 0.00 2.69
846 850 5.912149 ATATCCTACCATGAGCCAAAAGA 57.088 39.130 0.00 0.00 0.00 2.52
858 862 2.177016 AGCCAAAAGACCTAAACCCACT 59.823 45.455 0.00 0.00 0.00 4.00
953 965 2.204151 CCCCTTCACTCCACCCCT 60.204 66.667 0.00 0.00 0.00 4.79
1240 1252 3.630312 TCCTTGTTTCTTGTTCTTTCCCG 59.370 43.478 0.00 0.00 0.00 5.14
1259 1272 3.561503 CCGTCCATTTTTCGTTTCTTCC 58.438 45.455 0.00 0.00 0.00 3.46
1371 1387 4.023291 AGGTGGAACTTTGAAGCAAGAAA 58.977 39.130 0.00 0.00 36.74 2.52
1464 1480 3.319972 GTGTCGAATACCTAGGGTGCATA 59.680 47.826 14.81 0.00 36.19 3.14
1557 1573 5.731686 GCTTGCCATCTTACATTCTTACTGC 60.732 44.000 0.00 0.00 0.00 4.40
1653 1669 0.247814 CCTCTGCTGCGCAATTTACG 60.248 55.000 13.05 0.00 38.41 3.18
2098 2312 5.308237 ACCTTGTCTATCCAGTGAGACTTTT 59.692 40.000 10.75 0.00 42.21 2.27
2309 2523 2.489040 TCTGCATGCCATTGCTGAG 58.511 52.632 16.68 2.89 43.09 3.35
2359 2588 7.369803 AGACGCCATTGTATATTTCATGATC 57.630 36.000 0.00 0.00 0.00 2.92
2363 2592 5.716228 GCCATTGTATATTTCATGATCCCCA 59.284 40.000 0.00 0.00 0.00 4.96
2382 2611 7.047460 TCCCCATAGAACTTAACGATACTTC 57.953 40.000 0.00 0.00 0.00 3.01
2387 2616 8.601476 CCATAGAACTTAACGATACTTCAAACC 58.399 37.037 0.00 0.00 0.00 3.27
2605 2834 9.844790 TTTGAATAATCTTACTTGCATCTGTTG 57.155 29.630 0.00 0.00 0.00 3.33
2661 2890 6.919775 AGTGAGTAGTGACTAACTTGGATT 57.080 37.500 0.00 0.00 44.04 3.01
2670 2899 5.569059 GTGACTAACTTGGATTTTTCGCATG 59.431 40.000 0.00 0.00 0.00 4.06
2692 2921 9.573133 GCATGCTAGTGACTATTTTGTATTTTT 57.427 29.630 11.37 0.00 0.00 1.94
2712 2941 5.804692 TTTCGCACACAAAGTTTCTCTTA 57.195 34.783 0.00 0.00 35.02 2.10
2723 2952 7.382759 CACAAAGTTTCTCTTACAGTAGAGGAC 59.617 40.741 0.00 0.00 41.62 3.85
3009 3408 5.181009 GCTACGGTTGAAGGGTTAGTTATT 58.819 41.667 0.00 0.00 0.00 1.40
3020 3419 4.279922 AGGGTTAGTTATTGTGTGCAAACC 59.720 41.667 4.11 2.74 38.21 3.27
3061 3460 1.073763 TGATGCCAAACACAGCCTAGT 59.926 47.619 0.00 0.00 0.00 2.57
3231 3630 9.313118 TGATTCTCTTTCCTTTTTGTTTTTAGC 57.687 29.630 0.00 0.00 0.00 3.09
3427 3826 7.493367 AGATACAAGGTGTTCTACATTAGCTC 58.507 38.462 0.00 0.00 31.04 4.09
3431 3830 5.331876 AGGTGTTCTACATTAGCTCTCAC 57.668 43.478 0.00 0.00 0.00 3.51
3457 3856 7.555554 CCTGACTGTTCATTTCCATCTTATTCT 59.444 37.037 0.00 0.00 0.00 2.40
3463 3862 8.896744 TGTTCATTTCCATCTTATTCTGTCATC 58.103 33.333 0.00 0.00 0.00 2.92
3548 3948 3.242123 GGATAGCTTTGAAGTTCTTCGCG 60.242 47.826 0.00 0.00 0.00 5.87
3639 4039 5.470368 TCCGTAAGACATGACTTGAGAAAG 58.530 41.667 18.80 3.19 43.02 2.62
3730 4130 7.808381 CAGAAGAGTAAAGTATGTCGTGAAGAA 59.192 37.037 0.00 0.00 0.00 2.52
3736 4136 8.235905 AGTAAAGTATGTCGTGAAGAAGTCTAC 58.764 37.037 0.00 0.00 0.00 2.59
3781 4181 4.082081 CACACTTTGTACATTGGGCATGAT 60.082 41.667 0.00 0.00 36.24 2.45
3809 4209 6.589907 TCTTTTCTTTTGTTCTTTGCAAGGTC 59.410 34.615 8.56 4.31 0.00 3.85
4043 4443 3.688694 TGCCGGTAGCTTTAGAAGAAA 57.311 42.857 1.90 0.00 44.23 2.52
4098 4498 3.133721 ACAACCTTCTAGCAGCTATCCTG 59.866 47.826 1.54 0.00 44.67 3.86
4136 4536 5.365605 CCCAGTCCTATTACCATGTGAACTA 59.634 44.000 0.00 0.00 0.00 2.24
4137 4537 6.126883 CCCAGTCCTATTACCATGTGAACTAA 60.127 42.308 0.00 0.00 0.00 2.24
4175 4575 4.823989 GCTATATGTGCCCTTTGATTCTGT 59.176 41.667 0.00 0.00 0.00 3.41
4314 4714 8.783833 ATTTGAGGATTATGAGGATATGAACG 57.216 34.615 0.00 0.00 0.00 3.95
4319 4719 5.578727 GGATTATGAGGATATGAACGTCTGC 59.421 44.000 0.00 0.00 0.00 4.26
4331 4731 6.590234 ATGAACGTCTGCTACATATATCCA 57.410 37.500 0.00 0.00 0.00 3.41
4377 4777 5.640147 TCCAAGGTGGTCTCACATAATTTT 58.360 37.500 0.00 0.00 45.32 1.82
4443 4845 5.240121 GGAAATCTGTTGTTGGATTTGCAT 58.760 37.500 12.54 0.00 44.16 3.96
4457 4859 4.443315 GGATTTGCATATTCCAAACAGGGG 60.443 45.833 5.47 0.00 35.27 4.79
4471 4873 5.120399 CAAACAGGGGCATAATCGTAGTTA 58.880 41.667 0.00 0.00 0.00 2.24
4675 5078 4.048504 GGTTTGTTTGATTGTACACCTGC 58.951 43.478 0.00 0.00 0.00 4.85
4690 5093 2.226437 CACCTGCGCTGTTTAGACATTT 59.774 45.455 9.73 0.00 34.72 2.32
4823 5293 1.180029 GACATTTGGACATGCCTGCT 58.820 50.000 7.54 0.00 37.63 4.24
4824 5294 2.025981 AGACATTTGGACATGCCTGCTA 60.026 45.455 7.54 0.00 37.63 3.49
4845 5317 9.546909 CTGCTATATTGATTAGCCATTTAAACG 57.453 33.333 0.00 0.00 36.09 3.60
4905 5377 5.054390 TGAACAATTGGCCTTATCGTTTC 57.946 39.130 10.83 1.12 0.00 2.78
4906 5378 3.757745 ACAATTGGCCTTATCGTTTCG 57.242 42.857 10.83 0.00 0.00 3.46
5037 5522 3.068691 TCGCAACCCGAGGAGGAG 61.069 66.667 0.00 0.00 45.00 3.69
5118 5603 0.462581 CTAGCAGCGCAATTCCAGGA 60.463 55.000 11.47 0.00 0.00 3.86
5162 5647 3.499918 GCATCAGAATTGTAGCGGCTAAT 59.500 43.478 11.98 1.36 0.00 1.73
5197 5682 1.142474 CCGAACCTAAGCGAACGTTT 58.858 50.000 0.46 1.84 0.00 3.60
5299 5784 3.756963 CCAGTACTAAAAAGGGCTTGACC 59.243 47.826 0.00 0.00 37.93 4.02
5323 5808 7.093771 ACCAGTTAATCATGGGAAAAGACAATC 60.094 37.037 8.62 0.00 41.13 2.67
5738 6235 1.535462 CTTTCCCACTTGTACGCTTGG 59.465 52.381 0.46 0.46 0.00 3.61
5797 6294 5.971763 TGTGGCAACTTGAATTTGTAAGTT 58.028 33.333 9.35 9.35 45.25 2.66
5816 6313 8.160765 TGTAAGTTCCTTCCTTCATGTGAATTA 58.839 33.333 0.00 0.00 33.01 1.40
5822 6323 3.282021 TCCTTCATGTGAATTAGGCTGC 58.718 45.455 0.00 0.00 33.01 5.25
5824 6325 3.314635 CCTTCATGTGAATTAGGCTGCTC 59.685 47.826 0.00 0.00 33.01 4.26
5853 6354 1.397693 GCGCGAAAATGATCCGATCTG 60.398 52.381 12.10 0.00 0.00 2.90
5854 6355 2.127251 CGCGAAAATGATCCGATCTGA 58.873 47.619 0.00 0.00 0.00 3.27
5855 6356 2.154580 CGCGAAAATGATCCGATCTGAG 59.845 50.000 0.00 0.00 0.00 3.35
5856 6357 3.384668 GCGAAAATGATCCGATCTGAGA 58.615 45.455 9.78 0.00 0.00 3.27
5857 6358 3.993081 GCGAAAATGATCCGATCTGAGAT 59.007 43.478 9.78 0.00 0.00 2.75
5858 6359 4.143158 GCGAAAATGATCCGATCTGAGATG 60.143 45.833 0.00 0.00 0.00 2.90
5859 6360 4.143158 CGAAAATGATCCGATCTGAGATGC 60.143 45.833 0.00 0.00 0.00 3.91
5860 6361 2.651135 ATGATCCGATCTGAGATGCG 57.349 50.000 0.00 3.56 0.00 4.73
5861 6362 0.600057 TGATCCGATCTGAGATGCGG 59.400 55.000 20.10 20.10 44.83 5.69
5862 6363 0.600557 GATCCGATCTGAGATGCGGT 59.399 55.000 23.01 15.13 43.92 5.68
5863 6364 0.316522 ATCCGATCTGAGATGCGGTG 59.683 55.000 23.01 7.99 43.92 4.94
5864 6365 1.037579 TCCGATCTGAGATGCGGTGT 61.038 55.000 23.01 0.00 43.92 4.16
5865 6366 0.873312 CCGATCTGAGATGCGGTGTG 60.873 60.000 18.74 1.67 38.99 3.82
5866 6367 0.179127 CGATCTGAGATGCGGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
5867 6368 1.284657 GATCTGAGATGCGGTGTGTG 58.715 55.000 0.00 0.00 0.00 3.82
5868 6369 0.742281 ATCTGAGATGCGGTGTGTGC 60.742 55.000 0.00 0.00 0.00 4.57
5869 6370 2.358615 TGAGATGCGGTGTGTGCC 60.359 61.111 0.00 0.00 0.00 5.01
5870 6371 3.127533 GAGATGCGGTGTGTGCCC 61.128 66.667 0.00 0.00 0.00 5.36
5871 6372 4.722700 AGATGCGGTGTGTGCCCC 62.723 66.667 0.00 0.00 0.00 5.80
5876 6377 2.600173 CGGTGTGTGCCCCCAAAT 60.600 61.111 0.00 0.00 0.00 2.32
5877 6378 2.929903 CGGTGTGTGCCCCCAAATG 61.930 63.158 0.00 0.00 0.00 2.32
5878 6379 2.582493 GGTGTGTGCCCCCAAATGG 61.582 63.158 0.00 0.00 0.00 3.16
5908 6409 3.650950 GGGCTGCCCAACCTGAGA 61.651 66.667 32.46 0.00 44.65 3.27
5909 6410 2.679716 GGCTGCCCAACCTGAGAT 59.320 61.111 7.66 0.00 0.00 2.75
5910 6411 1.751927 GGCTGCCCAACCTGAGATG 60.752 63.158 7.66 0.00 0.00 2.90
5911 6412 1.751927 GCTGCCCAACCTGAGATGG 60.752 63.158 0.00 0.00 36.42 3.51
5912 6413 1.993653 CTGCCCAACCTGAGATGGA 59.006 57.895 5.91 0.00 39.12 3.41
5913 6414 0.549950 CTGCCCAACCTGAGATGGAT 59.450 55.000 5.91 0.00 39.12 3.41
5914 6415 0.256752 TGCCCAACCTGAGATGGATG 59.743 55.000 5.91 0.00 39.12 3.51
5915 6416 0.548031 GCCCAACCTGAGATGGATGA 59.452 55.000 5.91 0.00 39.12 2.92
5916 6417 1.064463 GCCCAACCTGAGATGGATGAA 60.064 52.381 5.91 0.00 39.12 2.57
5917 6418 2.423947 GCCCAACCTGAGATGGATGAAT 60.424 50.000 5.91 0.00 39.12 2.57
5918 6419 3.220110 CCCAACCTGAGATGGATGAATG 58.780 50.000 5.91 0.00 39.12 2.67
5919 6420 3.372349 CCCAACCTGAGATGGATGAATGT 60.372 47.826 5.91 0.00 39.12 2.71
5920 6421 3.630769 CCAACCTGAGATGGATGAATGTG 59.369 47.826 0.00 0.00 39.12 3.21
5921 6422 3.572632 ACCTGAGATGGATGAATGTGG 57.427 47.619 0.00 0.00 0.00 4.17
5922 6423 2.228059 CCTGAGATGGATGAATGTGGC 58.772 52.381 0.00 0.00 0.00 5.01
5923 6424 2.422377 CCTGAGATGGATGAATGTGGCA 60.422 50.000 0.00 0.00 0.00 4.92
5924 6425 3.284617 CTGAGATGGATGAATGTGGCAA 58.715 45.455 0.00 0.00 0.00 4.52
5925 6426 3.889538 CTGAGATGGATGAATGTGGCAAT 59.110 43.478 0.00 0.00 0.00 3.56
5926 6427 3.634910 TGAGATGGATGAATGTGGCAATG 59.365 43.478 0.00 0.00 0.00 2.82
5927 6428 2.364324 AGATGGATGAATGTGGCAATGC 59.636 45.455 0.00 0.00 0.00 3.56
5928 6429 1.558233 TGGATGAATGTGGCAATGCA 58.442 45.000 7.79 0.00 0.00 3.96
5929 6430 1.900486 TGGATGAATGTGGCAATGCAA 59.100 42.857 7.79 0.00 0.00 4.08
5930 6431 2.093921 TGGATGAATGTGGCAATGCAAG 60.094 45.455 7.79 0.00 0.00 4.01
5931 6432 1.931172 GATGAATGTGGCAATGCAAGC 59.069 47.619 7.79 5.98 0.00 4.01
5938 6439 4.827481 GCAATGCAAGCCAGATGG 57.173 55.556 0.00 0.00 38.53 3.51
5950 6451 4.349503 AGATGGCCGTGGCTGCAA 62.350 61.111 0.00 0.00 41.60 4.08
5951 6452 3.372730 GATGGCCGTGGCTGCAAA 61.373 61.111 0.00 0.00 41.60 3.68
5952 6453 3.346631 GATGGCCGTGGCTGCAAAG 62.347 63.158 0.00 0.00 41.60 2.77
5955 6456 4.043200 GCCGTGGCTGCAAAGGAC 62.043 66.667 13.51 0.64 38.26 3.85
5956 6457 3.726517 CCGTGGCTGCAAAGGACG 61.727 66.667 2.46 2.14 0.00 4.79
5957 6458 3.726517 CGTGGCTGCAAAGGACGG 61.727 66.667 0.50 0.00 0.00 4.79
5958 6459 2.281484 GTGGCTGCAAAGGACGGA 60.281 61.111 0.50 0.00 0.00 4.69
5959 6460 2.281484 TGGCTGCAAAGGACGGAC 60.281 61.111 0.50 0.00 0.00 4.79
5960 6461 2.281484 GGCTGCAAAGGACGGACA 60.281 61.111 0.50 0.00 0.00 4.02
5961 6462 1.896660 GGCTGCAAAGGACGGACAA 60.897 57.895 0.50 0.00 0.00 3.18
5962 6463 1.576421 GCTGCAAAGGACGGACAAG 59.424 57.895 0.00 0.00 0.00 3.16
5963 6464 1.856265 GCTGCAAAGGACGGACAAGG 61.856 60.000 0.00 0.00 0.00 3.61
5964 6465 0.250295 CTGCAAAGGACGGACAAGGA 60.250 55.000 0.00 0.00 0.00 3.36
5965 6466 0.400213 TGCAAAGGACGGACAAGGAT 59.600 50.000 0.00 0.00 0.00 3.24
5966 6467 1.626321 TGCAAAGGACGGACAAGGATA 59.374 47.619 0.00 0.00 0.00 2.59
5967 6468 2.280628 GCAAAGGACGGACAAGGATAG 58.719 52.381 0.00 0.00 0.00 2.08
5968 6469 2.093658 GCAAAGGACGGACAAGGATAGA 60.094 50.000 0.00 0.00 0.00 1.98
5969 6470 3.522553 CAAAGGACGGACAAGGATAGAC 58.477 50.000 0.00 0.00 0.00 2.59
5970 6471 1.777941 AGGACGGACAAGGATAGACC 58.222 55.000 0.00 0.00 39.35 3.85
5971 6472 1.006758 AGGACGGACAAGGATAGACCA 59.993 52.381 0.00 0.00 42.04 4.02
5972 6473 2.040178 GGACGGACAAGGATAGACCAT 58.960 52.381 0.00 0.00 42.04 3.55
5973 6474 2.224066 GGACGGACAAGGATAGACCATG 60.224 54.545 0.00 0.00 42.35 3.66
5974 6475 1.762957 ACGGACAAGGATAGACCATGG 59.237 52.381 11.19 11.19 41.13 3.66
5975 6476 2.039418 CGGACAAGGATAGACCATGGA 58.961 52.381 21.47 0.00 41.13 3.41
5976 6477 2.036475 CGGACAAGGATAGACCATGGAG 59.964 54.545 21.47 0.00 41.13 3.86
5977 6478 3.041946 GGACAAGGATAGACCATGGAGT 58.958 50.000 21.47 7.34 41.13 3.85
5978 6479 3.181461 GGACAAGGATAGACCATGGAGTG 60.181 52.174 21.47 6.48 41.13 3.51
5979 6480 3.706594 GACAAGGATAGACCATGGAGTGA 59.293 47.826 21.47 0.27 41.13 3.41
5980 6481 3.708631 ACAAGGATAGACCATGGAGTGAG 59.291 47.826 21.47 1.40 41.13 3.51
5981 6482 3.697190 AGGATAGACCATGGAGTGAGT 57.303 47.619 21.47 0.00 42.04 3.41
5982 6483 4.000928 AGGATAGACCATGGAGTGAGTT 57.999 45.455 21.47 0.00 42.04 3.01
5983 6484 3.964031 AGGATAGACCATGGAGTGAGTTC 59.036 47.826 21.47 3.07 42.04 3.01
5984 6485 3.070302 GGATAGACCATGGAGTGAGTTCC 59.930 52.174 21.47 10.89 38.79 3.62
5985 6486 7.599796 AGGATAGACCATGGAGTGAGTTCCA 62.600 48.000 21.47 0.00 42.96 3.53
5986 6487 8.981602 AGGATAGACCATGGAGTGAGTTCCAA 62.982 46.154 21.47 0.00 42.49 3.53
5994 6495 4.792068 TGGAGTGAGTTCCAAATCAAAGT 58.208 39.130 0.00 0.00 44.09 2.66
5995 6496 4.580167 TGGAGTGAGTTCCAAATCAAAGTG 59.420 41.667 0.00 0.00 44.09 3.16
5996 6497 4.580580 GGAGTGAGTTCCAAATCAAAGTGT 59.419 41.667 0.00 0.00 34.53 3.55
5997 6498 5.278022 GGAGTGAGTTCCAAATCAAAGTGTC 60.278 44.000 0.00 0.00 34.53 3.67
5998 6499 5.440610 AGTGAGTTCCAAATCAAAGTGTCT 58.559 37.500 0.00 0.00 34.53 3.41
5999 6500 5.297776 AGTGAGTTCCAAATCAAAGTGTCTG 59.702 40.000 0.00 0.00 34.53 3.51
6000 6501 5.296780 GTGAGTTCCAAATCAAAGTGTCTGA 59.703 40.000 0.00 0.00 34.53 3.27
6001 6502 6.016777 GTGAGTTCCAAATCAAAGTGTCTGAT 60.017 38.462 0.00 0.00 34.53 2.90
6002 6503 6.016860 TGAGTTCCAAATCAAAGTGTCTGATG 60.017 38.462 0.00 0.00 33.76 3.07
6003 6504 6.064060 AGTTCCAAATCAAAGTGTCTGATGA 58.936 36.000 0.00 0.00 33.76 2.92
6004 6505 5.947228 TCCAAATCAAAGTGTCTGATGAC 57.053 39.130 0.00 0.00 43.20 3.06
6005 6506 5.624159 TCCAAATCAAAGTGTCTGATGACT 58.376 37.500 0.00 0.00 43.29 3.41
6006 6507 5.702670 TCCAAATCAAAGTGTCTGATGACTC 59.297 40.000 0.00 0.00 43.29 3.36
6007 6508 5.390251 CCAAATCAAAGTGTCTGATGACTCG 60.390 44.000 0.00 0.00 43.29 4.18
6008 6509 4.790765 ATCAAAGTGTCTGATGACTCGA 57.209 40.909 0.00 0.00 43.29 4.04
6009 6510 4.790765 TCAAAGTGTCTGATGACTCGAT 57.209 40.909 0.00 0.00 43.29 3.59
6010 6511 4.488879 TCAAAGTGTCTGATGACTCGATG 58.511 43.478 0.00 0.00 43.29 3.84
6011 6512 2.575694 AGTGTCTGATGACTCGATGC 57.424 50.000 0.00 0.00 43.29 3.91
6012 6513 1.195347 GTGTCTGATGACTCGATGCG 58.805 55.000 0.00 0.00 43.29 4.73
6013 6514 1.094785 TGTCTGATGACTCGATGCGA 58.905 50.000 0.00 0.00 43.29 5.10
6014 6515 1.472480 TGTCTGATGACTCGATGCGAA 59.528 47.619 0.00 0.00 43.29 4.70
6015 6516 2.099756 TGTCTGATGACTCGATGCGAAT 59.900 45.455 0.00 0.00 43.29 3.34
6016 6517 2.723658 GTCTGATGACTCGATGCGAATC 59.276 50.000 0.00 0.00 39.94 2.52
6017 6518 2.620585 TCTGATGACTCGATGCGAATCT 59.379 45.455 0.96 0.00 33.18 2.40
6018 6519 3.067320 TCTGATGACTCGATGCGAATCTT 59.933 43.478 0.96 0.00 33.18 2.40
6019 6520 3.785486 TGATGACTCGATGCGAATCTTT 58.215 40.909 0.96 0.00 33.18 2.52
6020 6521 3.798878 TGATGACTCGATGCGAATCTTTC 59.201 43.478 0.96 0.00 33.18 2.62
6021 6522 3.230743 TGACTCGATGCGAATCTTTCA 57.769 42.857 0.96 0.00 33.18 2.69
6022 6523 3.584834 TGACTCGATGCGAATCTTTCAA 58.415 40.909 0.96 0.00 33.18 2.69
6023 6524 3.614176 TGACTCGATGCGAATCTTTCAAG 59.386 43.478 0.96 0.00 33.18 3.02
6024 6525 2.349886 ACTCGATGCGAATCTTTCAAGC 59.650 45.455 0.96 0.00 34.74 4.01
6025 6526 1.324435 TCGATGCGAATCTTTCAAGCG 59.676 47.619 0.96 0.00 31.06 4.68
6026 6527 1.593070 CGATGCGAATCTTTCAAGCGG 60.593 52.381 0.96 0.00 0.00 5.52
6027 6528 0.099436 ATGCGAATCTTTCAAGCGGC 59.901 50.000 0.00 0.00 0.00 6.53
6028 6529 1.233950 TGCGAATCTTTCAAGCGGCA 61.234 50.000 1.45 0.00 0.00 5.69
6029 6530 0.109781 GCGAATCTTTCAAGCGGCAA 60.110 50.000 1.45 0.00 0.00 4.52
6030 6531 1.606606 CGAATCTTTCAAGCGGCAAC 58.393 50.000 1.45 0.00 0.00 4.17
6031 6532 1.069296 CGAATCTTTCAAGCGGCAACA 60.069 47.619 1.45 0.00 0.00 3.33
6032 6533 2.604373 CGAATCTTTCAAGCGGCAACAA 60.604 45.455 1.45 0.00 0.00 2.83
6033 6534 2.712057 ATCTTTCAAGCGGCAACAAG 57.288 45.000 1.45 0.00 0.00 3.16
6034 6535 0.667993 TCTTTCAAGCGGCAACAAGG 59.332 50.000 1.45 0.00 0.00 3.61
6035 6536 0.385390 CTTTCAAGCGGCAACAAGGT 59.615 50.000 1.45 0.00 0.00 3.50
6036 6537 0.102120 TTTCAAGCGGCAACAAGGTG 59.898 50.000 1.45 0.00 0.00 4.00
6037 6538 2.348605 TTCAAGCGGCAACAAGGTGC 62.349 55.000 0.44 0.44 44.14 5.01
6038 6539 2.832661 AAGCGGCAACAAGGTGCA 60.833 55.556 12.66 0.00 46.81 4.57
6039 6540 3.137637 AAGCGGCAACAAGGTGCAC 62.138 57.895 12.66 8.80 46.81 4.57
6040 6541 4.980903 GCGGCAACAAGGTGCACG 62.981 66.667 12.66 13.40 46.81 5.34
6041 6542 4.980903 CGGCAACAAGGTGCACGC 62.981 66.667 12.66 7.20 46.81 5.34
6042 6543 4.645921 GGCAACAAGGTGCACGCC 62.646 66.667 14.18 14.18 46.81 5.68
6043 6544 4.980903 GCAACAAGGTGCACGCCG 62.981 66.667 11.45 3.51 44.29 6.46
6044 6545 4.980903 CAACAAGGTGCACGCCGC 62.981 66.667 11.45 0.00 42.89 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.529744 ATCGGAATGGGGGCTAGGC 61.530 63.158 8.00 8.00 0.00 3.93
84 85 1.939785 CACCGACGATGCTAGACGC 60.940 63.158 0.00 0.00 39.77 5.19
85 86 1.298413 CCACCGACGATGCTAGACG 60.298 63.158 0.00 0.00 0.00 4.18
111 112 3.409026 AATTCACCAGAGACACACCTC 57.591 47.619 0.00 0.00 0.00 3.85
127 128 6.909357 CGAGCAGATCCACAAAAGATAAATTC 59.091 38.462 0.00 0.00 0.00 2.17
131 132 4.081142 TCCGAGCAGATCCACAAAAGATAA 60.081 41.667 0.00 0.00 0.00 1.75
134 135 1.623311 TCCGAGCAGATCCACAAAAGA 59.377 47.619 0.00 0.00 0.00 2.52
140 141 2.353208 GGACATATCCGAGCAGATCCAC 60.353 54.545 0.00 0.00 34.48 4.02
167 168 5.923114 CCTGAAGACACATGAATATAGACGG 59.077 44.000 0.00 0.00 0.00 4.79
174 175 6.599244 GGATTCAACCTGAAGACACATGAATA 59.401 38.462 0.00 0.00 40.05 1.75
179 180 4.647564 AGGATTCAACCTGAAGACACAT 57.352 40.909 0.00 0.00 40.05 3.21
210 211 0.100682 GTCGCCGATGAGAAGTAGCA 59.899 55.000 0.00 0.00 0.00 3.49
236 237 0.035317 AAGATCAGTGCGCCAGAACA 59.965 50.000 4.18 0.00 0.00 3.18
237 238 2.010145 TAAGATCAGTGCGCCAGAAC 57.990 50.000 4.18 0.00 0.00 3.01
238 239 2.554142 CATAAGATCAGTGCGCCAGAA 58.446 47.619 4.18 0.00 0.00 3.02
239 240 1.202568 CCATAAGATCAGTGCGCCAGA 60.203 52.381 4.18 0.00 0.00 3.86
240 241 1.224075 CCATAAGATCAGTGCGCCAG 58.776 55.000 4.18 0.00 0.00 4.85
241 242 0.179048 CCCATAAGATCAGTGCGCCA 60.179 55.000 4.18 0.00 0.00 5.69
242 243 0.886490 CCCCATAAGATCAGTGCGCC 60.886 60.000 4.18 0.00 0.00 6.53
243 244 1.510480 GCCCCATAAGATCAGTGCGC 61.510 60.000 0.00 0.00 0.00 6.09
244 245 0.886490 GGCCCCATAAGATCAGTGCG 60.886 60.000 0.00 0.00 0.00 5.34
245 246 0.475906 AGGCCCCATAAGATCAGTGC 59.524 55.000 0.00 0.00 0.00 4.40
246 247 4.042062 TGATAAGGCCCCATAAGATCAGTG 59.958 45.833 0.00 0.00 0.00 3.66
247 248 4.042187 GTGATAAGGCCCCATAAGATCAGT 59.958 45.833 0.00 0.00 0.00 3.41
248 249 4.583871 GTGATAAGGCCCCATAAGATCAG 58.416 47.826 0.00 0.00 0.00 2.90
249 250 3.007940 CGTGATAAGGCCCCATAAGATCA 59.992 47.826 0.00 0.00 0.00 2.92
250 251 3.260884 TCGTGATAAGGCCCCATAAGATC 59.739 47.826 0.00 0.00 0.00 2.75
251 252 3.248024 TCGTGATAAGGCCCCATAAGAT 58.752 45.455 0.00 0.00 0.00 2.40
252 253 2.684943 TCGTGATAAGGCCCCATAAGA 58.315 47.619 0.00 0.00 0.00 2.10
253 254 3.703001 ATCGTGATAAGGCCCCATAAG 57.297 47.619 0.00 0.00 0.00 1.73
254 255 4.595781 AGTAATCGTGATAAGGCCCCATAA 59.404 41.667 0.00 0.00 0.00 1.90
255 256 4.164981 AGTAATCGTGATAAGGCCCCATA 58.835 43.478 0.00 0.00 0.00 2.74
256 257 2.979678 AGTAATCGTGATAAGGCCCCAT 59.020 45.455 0.00 0.00 0.00 4.00
257 258 2.404559 AGTAATCGTGATAAGGCCCCA 58.595 47.619 0.00 0.00 0.00 4.96
258 259 3.400255 GAAGTAATCGTGATAAGGCCCC 58.600 50.000 0.00 0.00 0.00 5.80
259 260 3.400255 GGAAGTAATCGTGATAAGGCCC 58.600 50.000 0.00 0.00 0.00 5.80
260 261 3.400255 GGGAAGTAATCGTGATAAGGCC 58.600 50.000 0.00 0.00 0.00 5.19
261 262 3.057734 CGGGAAGTAATCGTGATAAGGC 58.942 50.000 0.00 0.00 0.00 4.35
262 263 4.037684 AGTCGGGAAGTAATCGTGATAAGG 59.962 45.833 0.00 0.00 0.00 2.69
263 264 4.976731 CAGTCGGGAAGTAATCGTGATAAG 59.023 45.833 0.00 0.00 0.00 1.73
264 265 4.400251 ACAGTCGGGAAGTAATCGTGATAA 59.600 41.667 0.00 0.00 0.00 1.75
265 266 3.949754 ACAGTCGGGAAGTAATCGTGATA 59.050 43.478 0.00 0.00 0.00 2.15
266 267 2.758979 ACAGTCGGGAAGTAATCGTGAT 59.241 45.455 0.00 0.00 0.00 3.06
267 268 2.163010 GACAGTCGGGAAGTAATCGTGA 59.837 50.000 0.00 0.00 0.00 4.35
268 269 2.163815 AGACAGTCGGGAAGTAATCGTG 59.836 50.000 0.00 0.00 0.00 4.35
269 270 2.444421 AGACAGTCGGGAAGTAATCGT 58.556 47.619 0.00 0.00 0.00 3.73
270 271 3.626670 AGTAGACAGTCGGGAAGTAATCG 59.373 47.826 0.00 0.00 0.00 3.34
271 272 6.880942 ATAGTAGACAGTCGGGAAGTAATC 57.119 41.667 0.00 0.00 0.00 1.75
272 273 7.776969 TGTTATAGTAGACAGTCGGGAAGTAAT 59.223 37.037 0.00 0.00 0.00 1.89
273 274 7.112122 TGTTATAGTAGACAGTCGGGAAGTAA 58.888 38.462 0.00 0.00 0.00 2.24
274 275 6.653020 TGTTATAGTAGACAGTCGGGAAGTA 58.347 40.000 0.00 0.00 0.00 2.24
275 276 5.503927 TGTTATAGTAGACAGTCGGGAAGT 58.496 41.667 0.00 0.00 0.00 3.01
276 277 6.095160 ACTTGTTATAGTAGACAGTCGGGAAG 59.905 42.308 0.00 0.00 0.00 3.46
277 278 5.948162 ACTTGTTATAGTAGACAGTCGGGAA 59.052 40.000 0.00 0.00 0.00 3.97
278 279 5.503927 ACTTGTTATAGTAGACAGTCGGGA 58.496 41.667 0.00 0.00 0.00 5.14
279 280 5.831702 ACTTGTTATAGTAGACAGTCGGG 57.168 43.478 0.00 0.00 0.00 5.14
280 281 7.411588 GCAAAACTTGTTATAGTAGACAGTCGG 60.412 40.741 0.00 0.00 0.00 4.79
294 295 2.286536 GCGTCTTCGGCAAAACTTGTTA 60.287 45.455 0.00 0.00 37.56 2.41
295 296 1.533129 GCGTCTTCGGCAAAACTTGTT 60.533 47.619 0.00 0.00 37.56 2.83
296 297 0.028902 GCGTCTTCGGCAAAACTTGT 59.971 50.000 0.00 0.00 37.56 3.16
297 298 0.991770 CGCGTCTTCGGCAAAACTTG 60.992 55.000 0.00 0.00 37.56 3.16
298 299 1.278637 CGCGTCTTCGGCAAAACTT 59.721 52.632 0.00 0.00 37.56 2.66
299 300 2.935955 CGCGTCTTCGGCAAAACT 59.064 55.556 0.00 0.00 37.56 2.66
300 301 1.893168 TAGCGCGTCTTCGGCAAAAC 61.893 55.000 8.43 0.00 36.34 2.43
301 302 1.222766 TTAGCGCGTCTTCGGCAAAA 61.223 50.000 8.43 0.00 36.34 2.44
302 303 1.017177 ATTAGCGCGTCTTCGGCAAA 61.017 50.000 8.43 0.00 36.34 3.68
303 304 1.418342 GATTAGCGCGTCTTCGGCAA 61.418 55.000 8.43 0.00 36.34 4.52
304 305 1.876714 GATTAGCGCGTCTTCGGCA 60.877 57.895 8.43 0.00 36.34 5.69
305 306 1.146358 AAGATTAGCGCGTCTTCGGC 61.146 55.000 16.46 0.00 37.56 5.54
306 307 2.115348 TAAGATTAGCGCGTCTTCGG 57.885 50.000 22.67 0.00 36.23 4.30
307 308 3.181562 CGAATAAGATTAGCGCGTCTTCG 60.182 47.826 22.67 18.05 36.23 3.79
308 309 3.973135 TCGAATAAGATTAGCGCGTCTTC 59.027 43.478 22.67 10.74 36.23 2.87
309 310 3.729716 GTCGAATAAGATTAGCGCGTCTT 59.270 43.478 22.63 22.63 38.22 3.01
310 311 3.298317 GTCGAATAAGATTAGCGCGTCT 58.702 45.455 8.43 8.22 0.00 4.18
311 312 2.087150 CGTCGAATAAGATTAGCGCGTC 59.913 50.000 8.43 1.56 0.00 5.19
312 313 2.041966 CGTCGAATAAGATTAGCGCGT 58.958 47.619 8.43 0.00 0.00 6.01
313 314 2.304413 TCGTCGAATAAGATTAGCGCG 58.696 47.619 0.00 0.00 0.00 6.86
314 315 3.484649 TGTTCGTCGAATAAGATTAGCGC 59.515 43.478 11.45 0.00 0.00 5.92
315 316 5.229469 ACTTGTTCGTCGAATAAGATTAGCG 59.771 40.000 36.11 18.56 41.21 4.26
316 317 6.570690 ACTTGTTCGTCGAATAAGATTAGC 57.429 37.500 36.11 13.51 41.21 3.09
317 318 9.250986 CAAAACTTGTTCGTCGAATAAGATTAG 57.749 33.333 36.11 23.56 41.21 1.73
318 319 7.742963 GCAAAACTTGTTCGTCGAATAAGATTA 59.257 33.333 36.11 11.03 41.21 1.75
319 320 6.577427 GCAAAACTTGTTCGTCGAATAAGATT 59.423 34.615 36.11 30.18 41.21 2.40
320 321 6.077838 GCAAAACTTGTTCGTCGAATAAGAT 58.922 36.000 36.11 27.34 41.21 2.40
321 322 5.437263 GCAAAACTTGTTCGTCGAATAAGA 58.563 37.500 36.11 12.27 41.21 2.10
322 323 4.611366 GGCAAAACTTGTTCGTCGAATAAG 59.389 41.667 31.02 31.02 43.23 1.73
323 324 4.529446 GGCAAAACTTGTTCGTCGAATAA 58.471 39.130 11.45 13.59 0.00 1.40
324 325 3.363182 CGGCAAAACTTGTTCGTCGAATA 60.363 43.478 11.45 5.53 0.00 1.75
325 326 2.601266 CGGCAAAACTTGTTCGTCGAAT 60.601 45.455 11.45 0.00 0.00 3.34
326 327 1.267632 CGGCAAAACTTGTTCGTCGAA 60.268 47.619 2.90 2.90 0.00 3.71
327 328 0.302288 CGGCAAAACTTGTTCGTCGA 59.698 50.000 0.00 0.00 0.00 4.20
328 329 0.302288 TCGGCAAAACTTGTTCGTCG 59.698 50.000 4.29 4.29 33.58 5.12
329 330 2.461897 TTCGGCAAAACTTGTTCGTC 57.538 45.000 0.00 0.00 33.58 4.20
330 331 2.287368 GGATTCGGCAAAACTTGTTCGT 60.287 45.455 0.00 0.00 33.58 3.85
331 332 2.287308 TGGATTCGGCAAAACTTGTTCG 60.287 45.455 0.00 0.00 0.00 3.95
332 333 3.243401 ACTGGATTCGGCAAAACTTGTTC 60.243 43.478 0.00 0.00 0.00 3.18
352 353 0.692419 ATCATCGCCCCTTCCTCACT 60.692 55.000 0.00 0.00 0.00 3.41
366 367 1.766143 GAAGACGCGCCACCATCATC 61.766 60.000 5.73 0.00 0.00 2.92
385 386 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
474 476 7.871973 CGAGGAAACATCTGATCTATTCATCTT 59.128 37.037 14.12 0.00 32.72 2.40
508 511 4.028993 TGTAAACCAAAGGAGGCCTTAG 57.971 45.455 6.77 0.00 43.92 2.18
598 602 7.941238 CCTGTATGGAAATGTGATTCTATTCCT 59.059 37.037 4.67 0.00 40.15 3.36
655 659 7.386848 CGAGTCCAAGATAGTGTTCCTTTTTAA 59.613 37.037 0.00 0.00 0.00 1.52
656 660 6.872020 CGAGTCCAAGATAGTGTTCCTTTTTA 59.128 38.462 0.00 0.00 0.00 1.52
662 666 3.731264 CGTCGAGTCCAAGATAGTGTTCC 60.731 52.174 0.00 0.00 0.00 3.62
664 668 2.163815 CCGTCGAGTCCAAGATAGTGTT 59.836 50.000 0.00 0.00 0.00 3.32
668 672 3.777465 TTTCCGTCGAGTCCAAGATAG 57.223 47.619 0.00 0.00 0.00 2.08
694 698 9.458727 GATGTCATTTGGTTCATATGATAGGAT 57.541 33.333 6.17 0.00 35.18 3.24
698 702 8.663167 AGGAGATGTCATTTGGTTCATATGATA 58.337 33.333 6.17 3.31 35.18 2.15
774 778 6.781138 TGTAGAAAATGAAACGGCATGTATC 58.219 36.000 0.00 0.00 0.00 2.24
846 850 0.250166 GCGACACAGTGGGTTTAGGT 60.250 55.000 0.00 0.00 0.00 3.08
895 907 1.551019 GGACAGGGAGGGTTTAGCGT 61.551 60.000 0.00 0.00 0.00 5.07
897 909 1.221021 CGGACAGGGAGGGTTTAGC 59.779 63.158 0.00 0.00 0.00 3.09
953 965 2.449525 GCCGCGTGCTCGATTTGTA 61.450 57.895 13.13 0.00 39.71 2.41
1240 1252 3.561503 CCGGAAGAAACGAAAAATGGAC 58.438 45.455 0.00 0.00 0.00 4.02
1371 1387 3.568007 TGTCGTAGAAAAGGCAGCAATTT 59.432 39.130 0.00 0.00 39.69 1.82
1378 1394 4.250464 CAACCTATGTCGTAGAAAAGGCA 58.750 43.478 0.25 0.00 39.69 4.75
1464 1480 1.968017 CGGTCACTGCAATGCCACT 60.968 57.895 1.53 0.00 0.00 4.00
1557 1573 3.196463 CACAGCAGCCAATAAGAGAGAG 58.804 50.000 0.00 0.00 0.00 3.20
1653 1669 2.574450 TCGTTTACAGTTTTGTCCCCC 58.426 47.619 0.00 0.00 38.76 5.40
2098 2312 1.414919 AGTGTTAAGCAACCACTCGGA 59.585 47.619 0.00 0.00 33.41 4.55
2359 2588 6.812998 TGAAGTATCGTTAAGTTCTATGGGG 58.187 40.000 0.00 0.00 0.00 4.96
2363 2592 7.767659 GGGGTTTGAAGTATCGTTAAGTTCTAT 59.232 37.037 0.00 0.00 0.00 1.98
2382 2611 3.573967 GCATATAGGATGTTGGGGGTTTG 59.426 47.826 0.00 0.00 0.00 2.93
2387 2616 4.330250 CTTCTGCATATAGGATGTTGGGG 58.670 47.826 0.00 0.00 0.00 4.96
2472 2701 6.772716 TCAGATTTTCAATATCTACCCCAAGC 59.227 38.462 0.00 0.00 31.32 4.01
2553 2782 1.762957 GGTACTGAGCCCTCATAAGCA 59.237 52.381 0.00 0.00 39.13 3.91
2554 2783 2.043227 AGGTACTGAGCCCTCATAAGC 58.957 52.381 0.00 0.66 39.13 3.09
2661 2890 6.072728 ACAAAATAGTCACTAGCATGCGAAAA 60.073 34.615 13.01 0.00 0.00 2.29
2670 2899 7.960738 TGCGAAAAATACAAAATAGTCACTAGC 59.039 33.333 0.00 0.00 0.00 3.42
2692 2921 4.185394 TGTAAGAGAAACTTTGTGTGCGA 58.815 39.130 0.00 0.00 39.72 5.10
2712 2941 1.692519 ACGCAAAAGGTCCTCTACTGT 59.307 47.619 0.00 0.00 0.00 3.55
2723 2952 7.406799 AAAAGATAAAATGTCACGCAAAAGG 57.593 32.000 0.00 0.00 0.00 3.11
2760 2989 9.787532 GCAGTGTCATTAATTATTGTTACATGT 57.212 29.630 2.69 2.69 0.00 3.21
2785 3014 5.009854 TGCCAGGAAAATTATAAAGCTGC 57.990 39.130 0.00 0.00 0.00 5.25
2788 3017 7.201635 CCACAAATGCCAGGAAAATTATAAAGC 60.202 37.037 0.00 0.00 0.00 3.51
2852 3081 6.189036 AGTTAACTTCAGAAGGGCTAAGTT 57.811 37.500 14.90 0.00 42.91 2.66
3009 3408 2.746904 CTGATAATCCGGTTTGCACACA 59.253 45.455 8.06 1.11 0.00 3.72
3061 3460 5.064198 CACGAAAACAGAAGTCTAACAACCA 59.936 40.000 0.00 0.00 0.00 3.67
3067 3466 7.494625 AGTCAAATCACGAAAACAGAAGTCTAA 59.505 33.333 0.00 0.00 0.00 2.10
3068 3467 6.984474 AGTCAAATCACGAAAACAGAAGTCTA 59.016 34.615 0.00 0.00 0.00 2.59
3427 3826 3.743521 TGGAAATGAACAGTCAGGTGAG 58.256 45.455 0.00 0.00 37.14 3.51
3431 3830 7.555554 AGAATAAGATGGAAATGAACAGTCAGG 59.444 37.037 0.00 0.00 37.14 3.86
3491 3891 5.289510 ACTTCAGGGTTCCCATAGAATACT 58.710 41.667 10.73 0.00 36.69 2.12
3548 3948 2.871022 TCGTATCTCTAGGCGAACTGAC 59.129 50.000 0.00 0.00 0.00 3.51
3599 3999 7.961283 GTCTTACGGAAGGTGAAATATTTTGTC 59.039 37.037 7.73 0.00 33.09 3.18
3639 4039 4.183865 GGCCTTGGCAAAATAAGATGAAC 58.816 43.478 14.04 0.00 0.00 3.18
3730 4130 8.903820 AGCAAAATACAAAACAAGAAGTAGACT 58.096 29.630 0.00 0.00 0.00 3.24
3736 4136 6.756074 TGTGGAGCAAAATACAAAACAAGAAG 59.244 34.615 0.00 0.00 0.00 2.85
3781 4181 7.721286 TTGCAAAGAACAAAAGAAAAGACAA 57.279 28.000 0.00 0.00 0.00 3.18
3809 4209 0.393537 CTTGCTTGTAGGGCCTGGAG 60.394 60.000 18.53 12.07 0.00 3.86
4043 4443 6.942532 ATACATTCACAAGCCGTAATGAAT 57.057 33.333 0.00 0.00 41.37 2.57
4098 4498 0.257039 ACTGGGGAGAATGGCATGAC 59.743 55.000 0.00 0.00 0.00 3.06
4136 4536 5.187576 ACATATAGCCAGCCAAAACACATTT 59.812 36.000 0.00 0.00 0.00 2.32
4137 4537 4.711355 ACATATAGCCAGCCAAAACACATT 59.289 37.500 0.00 0.00 0.00 2.71
4191 4591 9.159254 AGGAACAGGAATTCAGTACATATGATA 57.841 33.333 10.38 0.00 0.00 2.15
4232 4632 8.142551 ACAGTATAGGCTACATAAAGTTACTGC 58.857 37.037 19.82 0.00 38.23 4.40
4314 4714 7.646548 TCCTGTATGGATATATGTAGCAGAC 57.353 40.000 0.00 0.00 40.56 3.51
4331 4731 6.128138 AGTTTTCTGGCTAGTTTCCTGTAT 57.872 37.500 0.00 0.00 0.00 2.29
4443 4845 4.141287 CGATTATGCCCCTGTTTGGAATA 58.859 43.478 0.00 0.00 38.35 1.75
4540 4942 6.369615 GGAACACATGAAAGCTGCAAATTTAT 59.630 34.615 0.00 0.00 0.00 1.40
4675 5078 4.290155 AGCAAACAAATGTCTAAACAGCG 58.710 39.130 0.00 0.00 39.20 5.18
4690 5093 2.543848 CTCGCAGTTGTTCTAGCAAACA 59.456 45.455 0.00 0.00 37.37 2.83
4763 5166 3.728076 TCGTATATGACTTGGGAGCAC 57.272 47.619 0.00 0.00 0.00 4.40
4869 5341 9.468532 GGCCAATTGTTCATTAGATAATCTTTC 57.531 33.333 4.43 0.00 0.00 2.62
4905 5377 2.285834 GGAAAATGATGTGACGCTAGCG 60.286 50.000 34.27 34.27 46.03 4.26
4906 5378 2.939103 AGGAAAATGATGTGACGCTAGC 59.061 45.455 4.06 4.06 0.00 3.42
5037 5522 5.049612 TCGTCGTCAGTCATCATATACTTCC 60.050 44.000 0.00 0.00 0.00 3.46
5197 5682 1.414919 GAACACAGGGTGTACCACTGA 59.585 52.381 17.32 0.00 46.79 3.41
5299 5784 8.059798 AGATTGTCTTTTCCCATGATTAACTG 57.940 34.615 0.00 0.00 0.00 3.16
5797 6294 4.228210 AGCCTAATTCACATGAAGGAAGGA 59.772 41.667 17.51 0.00 37.48 3.36
5847 6348 0.179127 ACACACCGCATCTCAGATCG 60.179 55.000 0.00 0.00 0.00 3.69
5853 6354 3.127533 GGGCACACACCGCATCTC 61.128 66.667 0.00 0.00 0.00 2.75
5854 6355 4.722700 GGGGCACACACCGCATCT 62.723 66.667 0.00 0.00 42.09 2.90
5859 6360 2.600173 ATTTGGGGGCACACACCG 60.600 61.111 0.00 0.00 0.00 4.94
5860 6361 2.582493 CCATTTGGGGGCACACACC 61.582 63.158 0.00 0.00 0.00 4.16
5861 6362 3.059099 CCATTTGGGGGCACACAC 58.941 61.111 0.00 0.00 0.00 3.82
5887 6388 3.017581 AGGTTGGGCAGCCCTAGG 61.018 66.667 31.51 0.06 45.70 3.02
5888 6389 2.262774 CTCAGGTTGGGCAGCCCTAG 62.263 65.000 31.51 15.68 45.70 3.02
5889 6390 2.204074 TCAGGTTGGGCAGCCCTA 60.204 61.111 31.51 22.12 45.70 3.53
5890 6391 3.655211 CTCAGGTTGGGCAGCCCT 61.655 66.667 31.51 8.27 45.70 5.19
5891 6392 2.988839 ATCTCAGGTTGGGCAGCCC 61.989 63.158 25.54 25.54 45.71 5.19
5892 6393 1.751927 CATCTCAGGTTGGGCAGCC 60.752 63.158 1.26 1.26 0.00 4.85
5893 6394 1.751927 CCATCTCAGGTTGGGCAGC 60.752 63.158 0.00 0.00 0.00 5.25
5894 6395 0.549950 ATCCATCTCAGGTTGGGCAG 59.450 55.000 0.00 0.00 34.12 4.85
5895 6396 0.256752 CATCCATCTCAGGTTGGGCA 59.743 55.000 0.00 0.00 34.12 5.36
5896 6397 0.548031 TCATCCATCTCAGGTTGGGC 59.452 55.000 0.00 0.00 34.12 5.36
5897 6398 3.220110 CATTCATCCATCTCAGGTTGGG 58.780 50.000 0.00 0.00 34.12 4.12
5898 6399 3.630769 CACATTCATCCATCTCAGGTTGG 59.369 47.826 0.00 0.00 34.51 3.77
5899 6400 3.630769 CCACATTCATCCATCTCAGGTTG 59.369 47.826 0.00 0.00 0.00 3.77
5900 6401 3.894759 CCACATTCATCCATCTCAGGTT 58.105 45.455 0.00 0.00 0.00 3.50
5901 6402 2.422519 GCCACATTCATCCATCTCAGGT 60.423 50.000 0.00 0.00 0.00 4.00
5902 6403 2.228059 GCCACATTCATCCATCTCAGG 58.772 52.381 0.00 0.00 0.00 3.86
5903 6404 2.927028 TGCCACATTCATCCATCTCAG 58.073 47.619 0.00 0.00 0.00 3.35
5904 6405 3.369242 TTGCCACATTCATCCATCTCA 57.631 42.857 0.00 0.00 0.00 3.27
5905 6406 3.552273 GCATTGCCACATTCATCCATCTC 60.552 47.826 0.00 0.00 0.00 2.75
5906 6407 2.364324 GCATTGCCACATTCATCCATCT 59.636 45.455 0.00 0.00 0.00 2.90
5907 6408 2.101750 TGCATTGCCACATTCATCCATC 59.898 45.455 6.12 0.00 0.00 3.51
5908 6409 2.112190 TGCATTGCCACATTCATCCAT 58.888 42.857 6.12 0.00 0.00 3.41
5909 6410 1.558233 TGCATTGCCACATTCATCCA 58.442 45.000 6.12 0.00 0.00 3.41
5910 6411 2.546778 CTTGCATTGCCACATTCATCC 58.453 47.619 6.12 0.00 0.00 3.51
5911 6412 1.931172 GCTTGCATTGCCACATTCATC 59.069 47.619 6.12 0.00 0.00 2.92
5912 6413 2.018542 GCTTGCATTGCCACATTCAT 57.981 45.000 6.12 0.00 0.00 2.57
5913 6414 3.518381 GCTTGCATTGCCACATTCA 57.482 47.368 6.12 0.00 0.00 2.57
5921 6422 4.827481 CCATCTGGCTTGCATTGC 57.173 55.556 0.46 0.46 0.00 3.56
5933 6434 3.866379 TTTGCAGCCACGGCCATCT 62.866 57.895 2.24 0.00 43.17 2.90
5934 6435 3.346631 CTTTGCAGCCACGGCCATC 62.347 63.158 2.24 0.00 43.17 3.51
5935 6436 3.376078 CTTTGCAGCCACGGCCAT 61.376 61.111 2.24 0.00 43.17 4.40
5938 6439 4.043200 GTCCTTTGCAGCCACGGC 62.043 66.667 0.00 0.00 42.33 5.68
5939 6440 3.726517 CGTCCTTTGCAGCCACGG 61.727 66.667 0.00 0.00 0.00 4.94
5940 6441 3.726517 CCGTCCTTTGCAGCCACG 61.727 66.667 0.00 0.00 0.00 4.94
5941 6442 2.281484 TCCGTCCTTTGCAGCCAC 60.281 61.111 0.00 0.00 0.00 5.01
5942 6443 2.281484 GTCCGTCCTTTGCAGCCA 60.281 61.111 0.00 0.00 0.00 4.75
5943 6444 1.856265 CTTGTCCGTCCTTTGCAGCC 61.856 60.000 0.00 0.00 0.00 4.85
5944 6445 1.576421 CTTGTCCGTCCTTTGCAGC 59.424 57.895 0.00 0.00 0.00 5.25
5945 6446 0.250295 TCCTTGTCCGTCCTTTGCAG 60.250 55.000 0.00 0.00 0.00 4.41
5946 6447 0.400213 ATCCTTGTCCGTCCTTTGCA 59.600 50.000 0.00 0.00 0.00 4.08
5947 6448 2.093658 TCTATCCTTGTCCGTCCTTTGC 60.094 50.000 0.00 0.00 0.00 3.68
5948 6449 3.522553 GTCTATCCTTGTCCGTCCTTTG 58.477 50.000 0.00 0.00 0.00 2.77
5949 6450 2.500504 GGTCTATCCTTGTCCGTCCTTT 59.499 50.000 0.00 0.00 0.00 3.11
5950 6451 2.108970 GGTCTATCCTTGTCCGTCCTT 58.891 52.381 0.00 0.00 0.00 3.36
5951 6452 1.006758 TGGTCTATCCTTGTCCGTCCT 59.993 52.381 0.00 0.00 37.07 3.85
5952 6453 1.481871 TGGTCTATCCTTGTCCGTCC 58.518 55.000 0.00 0.00 37.07 4.79
5953 6454 2.224066 CCATGGTCTATCCTTGTCCGTC 60.224 54.545 2.57 0.00 39.02 4.79
5954 6455 1.762957 CCATGGTCTATCCTTGTCCGT 59.237 52.381 2.57 0.00 39.02 4.69
5955 6456 2.036475 CTCCATGGTCTATCCTTGTCCG 59.964 54.545 12.58 0.00 39.02 4.79
5956 6457 3.041946 ACTCCATGGTCTATCCTTGTCC 58.958 50.000 12.58 0.00 39.02 4.02
5957 6458 3.706594 TCACTCCATGGTCTATCCTTGTC 59.293 47.826 12.58 0.00 39.02 3.18
5958 6459 3.708631 CTCACTCCATGGTCTATCCTTGT 59.291 47.826 12.58 0.00 39.02 3.16
5959 6460 3.708631 ACTCACTCCATGGTCTATCCTTG 59.291 47.826 12.58 0.00 39.97 3.61
5960 6461 4.000928 ACTCACTCCATGGTCTATCCTT 57.999 45.455 12.58 0.00 37.07 3.36
5961 6462 3.697190 ACTCACTCCATGGTCTATCCT 57.303 47.619 12.58 0.00 37.07 3.24
5962 6463 3.070302 GGAACTCACTCCATGGTCTATCC 59.930 52.174 12.58 8.07 35.36 2.59
5963 6464 3.706594 TGGAACTCACTCCATGGTCTATC 59.293 47.826 12.58 2.70 40.71 2.08
5964 6465 3.724478 TGGAACTCACTCCATGGTCTAT 58.276 45.455 12.58 0.00 40.71 1.98
5965 6466 3.184382 TGGAACTCACTCCATGGTCTA 57.816 47.619 12.58 0.00 40.71 2.59
5966 6467 2.030027 TGGAACTCACTCCATGGTCT 57.970 50.000 12.58 0.00 40.71 3.85
5967 6468 2.859165 TTGGAACTCACTCCATGGTC 57.141 50.000 12.58 0.00 45.03 4.02
5968 6469 3.074390 TGATTTGGAACTCACTCCATGGT 59.926 43.478 12.58 0.00 45.03 3.55
5969 6470 3.689347 TGATTTGGAACTCACTCCATGG 58.311 45.455 4.97 4.97 45.03 3.66
5970 6471 5.242393 ACTTTGATTTGGAACTCACTCCATG 59.758 40.000 0.00 0.00 45.03 3.66
5971 6472 5.242393 CACTTTGATTTGGAACTCACTCCAT 59.758 40.000 0.00 0.00 45.03 3.41
5972 6473 4.580167 CACTTTGATTTGGAACTCACTCCA 59.420 41.667 0.00 0.00 43.99 3.86
5973 6474 4.580580 ACACTTTGATTTGGAACTCACTCC 59.419 41.667 0.00 0.00 35.88 3.85
5974 6475 5.529060 AGACACTTTGATTTGGAACTCACTC 59.471 40.000 0.00 0.00 0.00 3.51
5975 6476 5.297776 CAGACACTTTGATTTGGAACTCACT 59.702 40.000 0.00 0.00 0.00 3.41
5976 6477 5.296780 TCAGACACTTTGATTTGGAACTCAC 59.703 40.000 0.00 0.00 0.00 3.51
5977 6478 5.436175 TCAGACACTTTGATTTGGAACTCA 58.564 37.500 0.00 0.00 0.00 3.41
5978 6479 6.205464 TCATCAGACACTTTGATTTGGAACTC 59.795 38.462 0.00 0.00 33.14 3.01
5979 6480 6.016777 GTCATCAGACACTTTGATTTGGAACT 60.017 38.462 0.00 0.00 44.34 3.01
5980 6481 6.145535 GTCATCAGACACTTTGATTTGGAAC 58.854 40.000 0.00 0.00 44.34 3.62
5981 6482 6.317789 GTCATCAGACACTTTGATTTGGAA 57.682 37.500 0.00 0.00 44.34 3.53
5982 6483 5.947228 GTCATCAGACACTTTGATTTGGA 57.053 39.130 0.00 0.00 44.34 3.53
5993 6494 7.934958 AGATTCGCATCGAGTCATCAGACAC 62.935 48.000 12.82 0.00 43.32 3.67
5994 6495 5.989430 AGATTCGCATCGAGTCATCAGACA 61.989 45.833 12.82 0.00 43.32 3.41
5995 6496 2.194800 TTCGCATCGAGTCATCAGAC 57.805 50.000 0.00 0.00 45.31 3.51
5996 6497 2.620585 AGATTCGCATCGAGTCATCAGA 59.379 45.455 12.82 0.00 43.32 3.27
5997 6498 3.010624 AGATTCGCATCGAGTCATCAG 57.989 47.619 12.82 0.00 43.32 2.90
5998 6499 3.443099 AAGATTCGCATCGAGTCATCA 57.557 42.857 12.82 0.00 43.32 3.07
5999 6500 3.798878 TGAAAGATTCGCATCGAGTCATC 59.201 43.478 12.82 10.73 43.32 2.92
6000 6501 3.785486 TGAAAGATTCGCATCGAGTCAT 58.215 40.909 12.82 0.02 43.32 3.06
6001 6502 3.230743 TGAAAGATTCGCATCGAGTCA 57.769 42.857 12.82 0.00 43.32 3.41
6002 6503 3.543070 GCTTGAAAGATTCGCATCGAGTC 60.543 47.826 3.97 3.97 41.68 3.36
6003 6504 2.349886 GCTTGAAAGATTCGCATCGAGT 59.650 45.455 0.00 0.00 37.14 4.18
6004 6505 2.596112 CGCTTGAAAGATTCGCATCGAG 60.596 50.000 0.00 0.00 37.14 4.04
6005 6506 1.324435 CGCTTGAAAGATTCGCATCGA 59.676 47.619 0.00 0.00 34.17 3.59
6006 6507 1.593070 CCGCTTGAAAGATTCGCATCG 60.593 52.381 0.00 0.00 34.17 3.84
6007 6508 1.857602 GCCGCTTGAAAGATTCGCATC 60.858 52.381 0.00 0.00 0.00 3.91
6008 6509 0.099436 GCCGCTTGAAAGATTCGCAT 59.901 50.000 0.00 0.00 0.00 4.73
6009 6510 1.233950 TGCCGCTTGAAAGATTCGCA 61.234 50.000 0.00 0.00 0.00 5.10
6010 6511 0.109781 TTGCCGCTTGAAAGATTCGC 60.110 50.000 0.00 0.00 0.00 4.70
6011 6512 1.069296 TGTTGCCGCTTGAAAGATTCG 60.069 47.619 0.00 0.00 0.00 3.34
6012 6513 2.704725 TGTTGCCGCTTGAAAGATTC 57.295 45.000 0.00 0.00 0.00 2.52
6013 6514 2.288395 CCTTGTTGCCGCTTGAAAGATT 60.288 45.455 0.00 0.00 0.00 2.40
6014 6515 1.270550 CCTTGTTGCCGCTTGAAAGAT 59.729 47.619 0.00 0.00 0.00 2.40
6015 6516 0.667993 CCTTGTTGCCGCTTGAAAGA 59.332 50.000 0.00 0.00 0.00 2.52
6016 6517 0.385390 ACCTTGTTGCCGCTTGAAAG 59.615 50.000 0.00 0.00 0.00 2.62
6017 6518 0.102120 CACCTTGTTGCCGCTTGAAA 59.898 50.000 0.00 0.00 0.00 2.69
6018 6519 1.732917 CACCTTGTTGCCGCTTGAA 59.267 52.632 0.00 0.00 0.00 2.69
6019 6520 2.844451 GCACCTTGTTGCCGCTTGA 61.844 57.895 0.00 0.00 36.42 3.02
6020 6521 2.355009 GCACCTTGTTGCCGCTTG 60.355 61.111 0.00 0.00 36.42 4.01
6021 6522 2.832661 TGCACCTTGTTGCCGCTT 60.833 55.556 0.00 0.00 42.25 4.68
6022 6523 3.595758 GTGCACCTTGTTGCCGCT 61.596 61.111 5.22 0.00 42.25 5.52
6023 6524 4.980903 CGTGCACCTTGTTGCCGC 62.981 66.667 12.15 0.00 42.25 6.53
6024 6525 4.980903 GCGTGCACCTTGTTGCCG 62.981 66.667 12.15 0.00 42.25 5.69
6025 6526 4.645921 GGCGTGCACCTTGTTGCC 62.646 66.667 12.15 13.33 42.25 4.52
6026 6527 4.980903 CGGCGTGCACCTTGTTGC 62.981 66.667 12.15 7.46 43.31 4.17
6027 6528 4.980903 GCGGCGTGCACCTTGTTG 62.981 66.667 12.15 0.00 45.45 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.