Multiple sequence alignment - TraesCS5D01G386000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G386000 chr5D 100.000 4699 0 0 1 4699 455755918 455760616 0.000000e+00 8678.0
1 TraesCS5D01G386000 chr5D 100.000 1127 0 0 5112 6238 455761029 455762155 0.000000e+00 2082.0
2 TraesCS5D01G386000 chr5D 89.655 58 6 0 5813 5870 353603352 353603295 2.410000e-09 75.0
3 TraesCS5D01G386000 chr5B 90.757 2445 139 40 192 2587 557528268 557530674 0.000000e+00 3182.0
4 TraesCS5D01G386000 chr5B 94.353 1275 47 13 2639 3898 557530769 557532033 0.000000e+00 1932.0
5 TraesCS5D01G386000 chr5B 96.269 536 19 1 5112 5647 557533065 557533599 0.000000e+00 878.0
6 TraesCS5D01G386000 chr5B 93.220 413 20 6 3984 4394 557532321 557532727 8.950000e-168 601.0
7 TraesCS5D01G386000 chr5B 96.113 283 10 1 4391 4672 557532763 557533045 1.580000e-125 460.0
8 TraesCS5D01G386000 chr5B 91.489 188 15 1 5950 6136 557697368 557697555 2.230000e-64 257.0
9 TraesCS5D01G386000 chr5B 96.154 104 4 0 5645 5748 557533661 557533764 2.990000e-38 171.0
10 TraesCS5D01G386000 chr5B 85.000 140 13 3 3622 3761 557532021 557532152 1.090000e-27 135.0
11 TraesCS5D01G386000 chr5B 95.890 73 3 0 3898 3970 557532077 557532149 1.100000e-22 119.0
12 TraesCS5D01G386000 chr5B 96.364 55 2 0 5746 5800 557533874 557533928 2.390000e-14 91.6
13 TraesCS5D01G386000 chrUn 92.157 1887 93 17 2033 3900 63584945 63583095 0.000000e+00 2614.0
14 TraesCS5D01G386000 chrUn 90.920 1696 99 22 541 2211 63586616 63584951 0.000000e+00 2228.0
15 TraesCS5D01G386000 chrUn 96.620 858 19 4 5387 6238 63581932 63581079 0.000000e+00 1415.0
16 TraesCS5D01G386000 chrUn 97.525 404 9 1 3991 4394 63582926 63582524 0.000000e+00 689.0
17 TraesCS5D01G386000 chrUn 98.377 308 5 0 4391 4698 63582488 63582181 5.500000e-150 542.0
18 TraesCS5D01G386000 chrUn 99.567 231 1 0 5112 5342 63582160 63581930 7.480000e-114 422.0
19 TraesCS5D01G386000 chrUn 88.685 327 31 6 233 556 63586972 63586649 1.630000e-105 394.0
20 TraesCS5D01G386000 chrUn 97.857 140 0 1 6088 6227 63580917 63580781 8.080000e-59 239.0
21 TraesCS5D01G386000 chrUn 98.630 73 1 0 3898 3970 63583056 63582984 5.070000e-26 130.0
22 TraesCS5D01G386000 chr7B 77.291 502 77 24 2461 2958 595453376 595452908 1.720000e-65 261.0
23 TraesCS5D01G386000 chr5A 98.013 151 0 1 6088 6238 573764940 573765087 6.200000e-65 259.0
24 TraesCS5D01G386000 chr4B 91.667 84 6 1 39 122 71248593 71248675 1.420000e-21 115.0
25 TraesCS5D01G386000 chr4B 91.463 82 6 1 41 122 168991041 168990961 1.840000e-20 111.0
26 TraesCS5D01G386000 chr3D 93.590 78 4 1 45 122 17658032 17657956 1.420000e-21 115.0
27 TraesCS5D01G386000 chr3D 96.364 55 2 0 5810 5864 527684137 527684191 2.390000e-14 91.6
28 TraesCS5D01G386000 chr3D 94.545 55 3 0 5812 5866 448453672 448453726 1.110000e-12 86.1
29 TraesCS5D01G386000 chr2D 92.500 80 5 1 38 117 622319871 622319793 5.110000e-21 113.0
30 TraesCS5D01G386000 chr2D 91.139 79 6 1 39 117 76902831 76902908 8.550000e-19 106.0
31 TraesCS5D01G386000 chr2A 84.348 115 16 2 35 148 88286418 88286531 1.840000e-20 111.0
32 TraesCS5D01G386000 chr6B 90.476 84 7 1 39 122 55695920 55695838 6.610000e-20 110.0
33 TraesCS5D01G386000 chr4D 82.883 111 17 2 40 149 394379907 394380016 1.430000e-16 99.0
34 TraesCS5D01G386000 chr3B 92.727 55 4 0 5812 5866 588486824 588486878 5.180000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G386000 chr5D 455755918 455762155 6237 False 5380.000000 8678 100.000000 1 6238 2 chr5D.!!$F1 6237
1 TraesCS5D01G386000 chr5B 557528268 557533928 5660 False 841.066667 3182 93.791111 192 5800 9 chr5B.!!$F2 5608
2 TraesCS5D01G386000 chrUn 63580781 63586972 6191 True 963.666667 2614 95.593111 233 6238 9 chrUn.!!$R1 6005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.036875 TCTCGTCTGACCAGAGAGCA 59.963 55.0 10.22 7.44 38.27 4.26 F
912 978 0.253327 TCTCTCTACTCCGCTCTGCA 59.747 55.0 0.00 0.00 0.00 4.41 F
1307 1386 0.391130 TAGCGCTTGTGTGGATGGAC 60.391 55.0 18.68 0.00 0.00 4.02 F
1346 1425 0.395312 GGGTGTCGGAGTGGAGAAAA 59.605 55.0 0.00 0.00 0.00 2.29 F
1534 1617 0.944386 CCGGTGTTCTGTCAACTTGG 59.056 55.0 0.00 0.00 0.00 3.61 F
2704 3093 0.386352 GTTTGGTTTCCTAACGCCGC 60.386 55.0 0.00 0.00 35.00 6.53 F
4291 4897 0.608640 ATTTTGACGAGGGAGAGCGT 59.391 50.0 0.00 0.00 44.33 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1428 0.608856 TGCACGCCCATGAATTCAGT 60.609 50.000 14.54 2.87 0.00 3.41 R
2108 2227 0.394352 GCCTCTATTGTGTGGTGGGG 60.394 60.000 0.00 0.00 0.00 4.96 R
2523 2832 0.921896 AGGGTATGGCAGCACAAGAT 59.078 50.000 0.00 0.00 0.00 2.40 R
2528 2837 1.450531 GCATGAGGGTATGGCAGCAC 61.451 60.000 0.00 0.00 0.00 4.40 R
3277 3666 2.086869 CATCTGCTTCGTTGGTTCCAT 58.913 47.619 0.00 0.00 0.00 3.41 R
4537 5184 0.042708 GCTGCAGTATCACGAATGCG 60.043 55.000 16.64 0.00 41.58 4.73 R
5982 6809 1.679977 CAGGTGATGGGTGGCCAAG 60.680 63.158 7.24 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.807708 ATATTAACGAAACTGCTCTGTACG 57.192 37.500 0.00 0.00 0.00 3.67
24 25 2.787601 AACGAAACTGCTCTGTACGA 57.212 45.000 0.00 0.00 0.00 3.43
25 26 3.299340 AACGAAACTGCTCTGTACGAT 57.701 42.857 0.00 0.00 0.00 3.73
26 27 2.596452 ACGAAACTGCTCTGTACGATG 58.404 47.619 0.00 0.00 0.00 3.84
27 28 1.321743 CGAAACTGCTCTGTACGATGC 59.678 52.381 0.00 0.00 0.00 3.91
28 29 2.611518 GAAACTGCTCTGTACGATGCT 58.388 47.619 0.00 0.00 0.00 3.79
29 30 2.751166 AACTGCTCTGTACGATGCTT 57.249 45.000 0.00 0.00 0.00 3.91
30 31 2.751166 ACTGCTCTGTACGATGCTTT 57.249 45.000 0.00 0.00 0.00 3.51
31 32 2.611518 ACTGCTCTGTACGATGCTTTC 58.388 47.619 0.00 0.00 0.00 2.62
32 33 2.232452 ACTGCTCTGTACGATGCTTTCT 59.768 45.455 0.00 0.00 0.00 2.52
33 34 2.857152 CTGCTCTGTACGATGCTTTCTC 59.143 50.000 0.00 0.00 0.00 2.87
34 35 1.849219 GCTCTGTACGATGCTTTCTCG 59.151 52.381 0.00 0.00 41.77 4.04
36 37 3.102276 CTCTGTACGATGCTTTCTCGTC 58.898 50.000 1.17 0.00 45.63 4.20
37 38 2.747989 TCTGTACGATGCTTTCTCGTCT 59.252 45.455 1.17 0.00 45.63 4.18
38 39 2.848887 CTGTACGATGCTTTCTCGTCTG 59.151 50.000 1.17 0.00 45.63 3.51
39 40 2.486592 TGTACGATGCTTTCTCGTCTGA 59.513 45.455 1.17 0.00 45.63 3.27
40 41 1.983972 ACGATGCTTTCTCGTCTGAC 58.016 50.000 0.00 0.00 45.63 3.51
41 42 1.272781 CGATGCTTTCTCGTCTGACC 58.727 55.000 1.55 0.00 0.00 4.02
42 43 1.402852 CGATGCTTTCTCGTCTGACCA 60.403 52.381 1.55 0.00 0.00 4.02
43 44 2.266554 GATGCTTTCTCGTCTGACCAG 58.733 52.381 1.55 0.00 0.00 4.00
44 45 1.328279 TGCTTTCTCGTCTGACCAGA 58.672 50.000 0.73 0.73 34.56 3.86
45 46 1.270826 TGCTTTCTCGTCTGACCAGAG 59.729 52.381 5.31 5.91 38.27 3.35
46 47 1.542030 GCTTTCTCGTCTGACCAGAGA 59.458 52.381 10.22 10.22 38.27 3.10
47 48 2.415357 GCTTTCTCGTCTGACCAGAGAG 60.415 54.545 15.47 15.47 41.38 3.20
48 49 1.169577 TTCTCGTCTGACCAGAGAGC 58.830 55.000 12.89 0.97 41.38 4.09
49 50 0.036875 TCTCGTCTGACCAGAGAGCA 59.963 55.000 10.22 7.44 38.27 4.26
50 51 0.884514 CTCGTCTGACCAGAGAGCAA 59.115 55.000 1.55 0.00 38.27 3.91
51 52 1.270826 CTCGTCTGACCAGAGAGCAAA 59.729 52.381 1.55 0.00 38.27 3.68
52 53 1.895798 TCGTCTGACCAGAGAGCAAAT 59.104 47.619 1.55 0.00 38.27 2.32
53 54 2.094494 TCGTCTGACCAGAGAGCAAATC 60.094 50.000 1.55 0.00 38.27 2.17
54 55 2.353109 CGTCTGACCAGAGAGCAAATCA 60.353 50.000 1.55 0.00 38.27 2.57
55 56 3.678252 CGTCTGACCAGAGAGCAAATCAT 60.678 47.826 1.55 0.00 38.27 2.45
56 57 3.870419 GTCTGACCAGAGAGCAAATCATC 59.130 47.826 0.00 0.00 38.27 2.92
57 58 3.773667 TCTGACCAGAGAGCAAATCATCT 59.226 43.478 0.00 0.00 32.82 2.90
58 59 4.121317 CTGACCAGAGAGCAAATCATCTC 58.879 47.826 0.00 0.00 41.90 2.75
66 67 6.864360 GAGAGCAAATCATCTCTAAATGCT 57.136 37.500 0.00 0.00 44.61 3.79
67 68 7.959689 GAGAGCAAATCATCTCTAAATGCTA 57.040 36.000 0.00 0.00 42.24 3.49
68 69 8.550710 GAGAGCAAATCATCTCTAAATGCTAT 57.449 34.615 0.00 0.00 42.24 2.97
69 70 8.325421 AGAGCAAATCATCTCTAAATGCTATG 57.675 34.615 0.00 0.00 42.24 2.23
70 71 7.390996 AGAGCAAATCATCTCTAAATGCTATGG 59.609 37.037 0.00 0.00 42.24 2.74
71 72 6.072064 AGCAAATCATCTCTAAATGCTATGGC 60.072 38.462 0.00 0.00 40.56 4.40
72 73 6.618811 CAAATCATCTCTAAATGCTATGGCC 58.381 40.000 0.00 0.00 37.74 5.36
73 74 4.292186 TCATCTCTAAATGCTATGGCCC 57.708 45.455 0.00 0.00 37.74 5.80
74 75 3.652387 TCATCTCTAAATGCTATGGCCCA 59.348 43.478 0.00 0.00 37.74 5.36
75 76 3.492102 TCTCTAAATGCTATGGCCCAC 57.508 47.619 0.00 0.00 37.74 4.61
76 77 2.777114 TCTCTAAATGCTATGGCCCACA 59.223 45.455 0.00 0.00 37.74 4.17
77 78 3.201930 TCTCTAAATGCTATGGCCCACAA 59.798 43.478 0.00 0.00 37.74 3.33
78 79 3.953612 CTCTAAATGCTATGGCCCACAAA 59.046 43.478 0.00 0.00 37.74 2.83
79 80 3.699038 TCTAAATGCTATGGCCCACAAAC 59.301 43.478 0.00 0.00 37.74 2.93
80 81 2.236489 AATGCTATGGCCCACAAACT 57.764 45.000 0.00 0.00 37.74 2.66
81 82 1.477553 ATGCTATGGCCCACAAACTG 58.522 50.000 0.00 0.00 37.74 3.16
82 83 0.403655 TGCTATGGCCCACAAACTGA 59.596 50.000 0.00 0.00 37.74 3.41
83 84 1.202989 TGCTATGGCCCACAAACTGAA 60.203 47.619 0.00 0.00 37.74 3.02
84 85 2.102578 GCTATGGCCCACAAACTGAAT 58.897 47.619 0.00 0.00 0.00 2.57
85 86 2.497273 GCTATGGCCCACAAACTGAATT 59.503 45.455 0.00 0.00 0.00 2.17
86 87 3.699038 GCTATGGCCCACAAACTGAATTA 59.301 43.478 0.00 0.00 0.00 1.40
87 88 4.440112 GCTATGGCCCACAAACTGAATTAC 60.440 45.833 0.00 0.00 0.00 1.89
88 89 2.243810 TGGCCCACAAACTGAATTACC 58.756 47.619 0.00 0.00 0.00 2.85
89 90 2.158385 TGGCCCACAAACTGAATTACCT 60.158 45.455 0.00 0.00 0.00 3.08
90 91 3.074687 TGGCCCACAAACTGAATTACCTA 59.925 43.478 0.00 0.00 0.00 3.08
91 92 4.264172 TGGCCCACAAACTGAATTACCTAT 60.264 41.667 0.00 0.00 0.00 2.57
92 93 4.097892 GGCCCACAAACTGAATTACCTATG 59.902 45.833 0.00 0.00 0.00 2.23
93 94 4.947388 GCCCACAAACTGAATTACCTATGA 59.053 41.667 0.00 0.00 0.00 2.15
94 95 5.594317 GCCCACAAACTGAATTACCTATGAT 59.406 40.000 0.00 0.00 0.00 2.45
95 96 6.096846 GCCCACAAACTGAATTACCTATGATT 59.903 38.462 0.00 0.00 0.00 2.57
96 97 7.483307 CCCACAAACTGAATTACCTATGATTG 58.517 38.462 0.00 0.00 0.00 2.67
97 98 7.122650 CCCACAAACTGAATTACCTATGATTGT 59.877 37.037 0.00 0.00 0.00 2.71
98 99 8.184192 CCACAAACTGAATTACCTATGATTGTC 58.816 37.037 0.00 0.00 0.00 3.18
99 100 8.950210 CACAAACTGAATTACCTATGATTGTCT 58.050 33.333 0.00 0.00 0.00 3.41
100 101 9.167311 ACAAACTGAATTACCTATGATTGTCTC 57.833 33.333 0.00 0.00 0.00 3.36
101 102 9.388506 CAAACTGAATTACCTATGATTGTCTCT 57.611 33.333 0.00 0.00 0.00 3.10
106 107 9.914131 TGAATTACCTATGATTGTCTCTAATCG 57.086 33.333 0.00 0.00 39.39 3.34
107 108 9.915629 GAATTACCTATGATTGTCTCTAATCGT 57.084 33.333 0.00 0.00 39.39 3.73
110 111 6.900189 ACCTATGATTGTCTCTAATCGTACG 58.100 40.000 9.53 9.53 39.39 3.67
111 112 6.709397 ACCTATGATTGTCTCTAATCGTACGA 59.291 38.462 21.93 21.93 39.39 3.43
112 113 7.095144 ACCTATGATTGTCTCTAATCGTACGAG 60.095 40.741 23.89 10.33 39.39 4.18
113 114 6.621316 ATGATTGTCTCTAATCGTACGAGT 57.379 37.500 23.89 23.25 39.39 4.18
114 115 5.807344 TGATTGTCTCTAATCGTACGAGTG 58.193 41.667 26.83 16.55 39.39 3.51
115 116 5.353400 TGATTGTCTCTAATCGTACGAGTGT 59.647 40.000 26.83 15.06 39.39 3.55
116 117 5.618056 TTGTCTCTAATCGTACGAGTGTT 57.382 39.130 26.83 16.85 0.00 3.32
117 118 4.966249 TGTCTCTAATCGTACGAGTGTTG 58.034 43.478 26.83 16.39 0.00 3.33
118 119 4.142752 TGTCTCTAATCGTACGAGTGTTGG 60.143 45.833 26.83 16.24 0.00 3.77
119 120 4.093998 GTCTCTAATCGTACGAGTGTTGGA 59.906 45.833 26.83 19.22 0.00 3.53
120 121 4.093998 TCTCTAATCGTACGAGTGTTGGAC 59.906 45.833 26.83 0.00 0.00 4.02
121 122 3.752747 TCTAATCGTACGAGTGTTGGACA 59.247 43.478 26.83 5.25 0.00 4.02
122 123 3.374220 AATCGTACGAGTGTTGGACAA 57.626 42.857 23.89 0.00 0.00 3.18
123 124 2.410785 TCGTACGAGTGTTGGACAAG 57.589 50.000 15.28 0.00 0.00 3.16
124 125 1.948834 TCGTACGAGTGTTGGACAAGA 59.051 47.619 15.28 0.00 0.00 3.02
125 126 2.358582 TCGTACGAGTGTTGGACAAGAA 59.641 45.455 15.28 0.00 0.00 2.52
126 127 3.005050 TCGTACGAGTGTTGGACAAGAAT 59.995 43.478 15.28 0.00 0.00 2.40
127 128 3.364023 CGTACGAGTGTTGGACAAGAATC 59.636 47.826 10.44 0.29 0.00 2.52
128 129 2.767505 ACGAGTGTTGGACAAGAATCC 58.232 47.619 4.44 0.00 39.45 3.01
137 138 4.437682 TGGACAAGAATCCATCATACCC 57.562 45.455 0.00 0.00 44.14 3.69
138 139 3.785325 TGGACAAGAATCCATCATACCCA 59.215 43.478 0.00 0.00 44.14 4.51
139 140 4.416513 TGGACAAGAATCCATCATACCCAT 59.583 41.667 0.00 0.00 44.14 4.00
140 141 5.610557 TGGACAAGAATCCATCATACCCATA 59.389 40.000 0.00 0.00 44.14 2.74
141 142 6.176183 GGACAAGAATCCATCATACCCATAG 58.824 44.000 0.00 0.00 38.77 2.23
142 143 5.564550 ACAAGAATCCATCATACCCATAGC 58.435 41.667 0.00 0.00 0.00 2.97
143 144 5.073554 ACAAGAATCCATCATACCCATAGCA 59.926 40.000 0.00 0.00 0.00 3.49
144 145 5.848286 AGAATCCATCATACCCATAGCAA 57.152 39.130 0.00 0.00 0.00 3.91
145 146 5.813383 AGAATCCATCATACCCATAGCAAG 58.187 41.667 0.00 0.00 0.00 4.01
146 147 4.581309 ATCCATCATACCCATAGCAAGG 57.419 45.455 0.00 0.00 0.00 3.61
147 148 3.326521 TCCATCATACCCATAGCAAGGT 58.673 45.455 0.00 0.00 40.31 3.50
148 149 3.721575 TCCATCATACCCATAGCAAGGTT 59.278 43.478 0.00 0.00 37.59 3.50
149 150 4.074970 CCATCATACCCATAGCAAGGTTC 58.925 47.826 0.00 0.00 37.59 3.62
150 151 4.446167 CCATCATACCCATAGCAAGGTTCA 60.446 45.833 0.00 0.00 37.59 3.18
151 152 5.319453 CATCATACCCATAGCAAGGTTCAT 58.681 41.667 0.00 0.00 37.59 2.57
152 153 6.475504 CATCATACCCATAGCAAGGTTCATA 58.524 40.000 0.00 0.00 37.59 2.15
153 154 6.702449 TCATACCCATAGCAAGGTTCATAT 57.298 37.500 0.00 0.00 37.59 1.78
154 155 7.806680 TCATACCCATAGCAAGGTTCATATA 57.193 36.000 0.00 0.00 37.59 0.86
155 156 8.392631 TCATACCCATAGCAAGGTTCATATAT 57.607 34.615 0.00 0.00 37.59 0.86
156 157 8.835734 TCATACCCATAGCAAGGTTCATATATT 58.164 33.333 0.00 0.00 37.59 1.28
159 160 8.863872 ACCCATAGCAAGGTTCATATATTAAC 57.136 34.615 1.75 1.75 29.94 2.01
160 161 8.444783 ACCCATAGCAAGGTTCATATATTAACA 58.555 33.333 11.03 0.00 29.94 2.41
161 162 9.295825 CCCATAGCAAGGTTCATATATTAACAA 57.704 33.333 11.03 0.00 0.00 2.83
164 165 7.277174 AGCAAGGTTCATATATTAACAAGGC 57.723 36.000 11.03 9.97 0.00 4.35
165 166 6.017109 AGCAAGGTTCATATATTAACAAGGCG 60.017 38.462 11.03 0.00 0.00 5.52
166 167 5.941948 AGGTTCATATATTAACAAGGCGC 57.058 39.130 11.03 0.00 0.00 6.53
167 168 4.760204 AGGTTCATATATTAACAAGGCGCC 59.240 41.667 21.89 21.89 0.00 6.53
168 169 4.517453 GGTTCATATATTAACAAGGCGCCA 59.483 41.667 31.54 6.82 0.00 5.69
169 170 5.009210 GGTTCATATATTAACAAGGCGCCAA 59.991 40.000 31.54 14.60 0.00 4.52
170 171 6.460399 GGTTCATATATTAACAAGGCGCCAAA 60.460 38.462 31.54 14.57 0.00 3.28
171 172 6.701145 TCATATATTAACAAGGCGCCAAAA 57.299 33.333 31.54 14.94 0.00 2.44
172 173 7.101652 TCATATATTAACAAGGCGCCAAAAA 57.898 32.000 31.54 15.32 0.00 1.94
173 174 7.199766 TCATATATTAACAAGGCGCCAAAAAG 58.800 34.615 31.54 15.33 0.00 2.27
174 175 3.744238 ATTAACAAGGCGCCAAAAAGT 57.256 38.095 31.54 16.02 0.00 2.66
175 176 2.785713 TAACAAGGCGCCAAAAAGTC 57.214 45.000 31.54 0.00 0.00 3.01
176 177 0.820871 AACAAGGCGCCAAAAAGTCA 59.179 45.000 31.54 0.00 0.00 3.41
177 178 1.039856 ACAAGGCGCCAAAAAGTCAT 58.960 45.000 31.54 0.00 0.00 3.06
178 179 1.412343 ACAAGGCGCCAAAAAGTCATT 59.588 42.857 31.54 7.70 0.00 2.57
179 180 2.158971 ACAAGGCGCCAAAAAGTCATTT 60.159 40.909 31.54 6.84 0.00 2.32
180 181 2.153366 AGGCGCCAAAAAGTCATTTG 57.847 45.000 31.54 0.00 39.47 2.32
181 182 0.512518 GGCGCCAAAAAGTCATTTGC 59.487 50.000 24.80 0.00 38.64 3.68
182 183 0.512518 GCGCCAAAAAGTCATTTGCC 59.487 50.000 0.00 0.00 38.64 4.52
183 184 1.147473 CGCCAAAAAGTCATTTGCCC 58.853 50.000 0.00 0.00 38.64 5.36
184 185 1.522668 GCCAAAAAGTCATTTGCCCC 58.477 50.000 0.00 0.00 38.64 5.80
185 186 1.202746 GCCAAAAAGTCATTTGCCCCA 60.203 47.619 0.00 0.00 38.64 4.96
186 187 2.552809 GCCAAAAAGTCATTTGCCCCAT 60.553 45.455 0.00 0.00 38.64 4.00
187 188 3.307339 GCCAAAAAGTCATTTGCCCCATA 60.307 43.478 0.00 0.00 38.64 2.74
188 189 4.626046 GCCAAAAAGTCATTTGCCCCATAT 60.626 41.667 0.00 0.00 38.64 1.78
189 190 5.396213 GCCAAAAAGTCATTTGCCCCATATA 60.396 40.000 0.00 0.00 38.64 0.86
190 191 6.648192 CCAAAAAGTCATTTGCCCCATATAA 58.352 36.000 0.00 0.00 38.64 0.98
193 194 7.494922 AAAAGTCATTTGCCCCATATAAAGT 57.505 32.000 0.00 0.00 0.00 2.66
229 230 3.805267 GCCACTCGCCATTGAGAG 58.195 61.111 0.00 0.00 43.32 3.20
242 249 4.736759 GCCATTGAGAGAAGGCAAATCATG 60.737 45.833 0.00 0.00 46.26 3.07
252 259 3.992999 AGGCAAATCATGAAACCCCATA 58.007 40.909 0.00 0.00 0.00 2.74
261 268 6.086011 TCATGAAACCCCATATAAAGTGGT 57.914 37.500 0.00 0.00 34.87 4.16
264 271 3.748645 AACCCCATATAAAGTGGTGCA 57.251 42.857 0.00 0.00 34.87 4.57
280 288 2.158914 GGTGCAAATGATCCAAATCCCC 60.159 50.000 0.00 0.00 0.00 4.81
281 289 2.767960 GTGCAAATGATCCAAATCCCCT 59.232 45.455 0.00 0.00 0.00 4.79
312 323 3.403228 AGCCTCAAAGGATCTCTCTCT 57.597 47.619 0.00 0.00 37.67 3.10
331 344 6.833416 TCTCTCTCTCCAGAATTCCTAAAGAG 59.167 42.308 14.19 14.19 35.58 2.85
385 398 4.768968 AGAGAGGCATTTTACACTGCAATT 59.231 37.500 0.00 0.00 40.18 2.32
425 439 7.502060 AAGAATGAGTAAATCTCTCCCAGAA 57.498 36.000 0.00 0.00 43.13 3.02
448 462 7.398904 AGAATGGAAGGGAATAAATTTCCGAAA 59.601 33.333 0.00 0.00 40.54 3.46
496 510 2.739913 CAACCGTAAAATCAGCTTCCGA 59.260 45.455 0.00 0.00 0.00 4.55
497 511 2.618053 ACCGTAAAATCAGCTTCCGAG 58.382 47.619 0.00 0.00 0.00 4.63
604 663 0.610687 CAGACAGGGAGAAGTGGGAC 59.389 60.000 0.00 0.00 0.00 4.46
605 664 0.900647 AGACAGGGAGAAGTGGGACG 60.901 60.000 0.00 0.00 0.00 4.79
606 665 1.152312 ACAGGGAGAAGTGGGACGT 60.152 57.895 0.00 0.00 0.00 4.34
607 666 1.293498 CAGGGAGAAGTGGGACGTG 59.707 63.158 0.00 0.00 0.00 4.49
694 753 2.743718 CACCCAACTGACGGAGCT 59.256 61.111 0.00 0.00 0.00 4.09
719 778 3.602030 ACTCCCTCCGGACCCACT 61.602 66.667 0.00 0.00 33.32 4.00
720 779 2.284699 CTCCCTCCGGACCCACTT 60.285 66.667 0.00 0.00 33.32 3.16
762 822 0.909623 ACCGGTGTCCCCAGAATTAG 59.090 55.000 6.12 0.00 0.00 1.73
794 854 2.165301 CGCTGCAACGGCTACTACC 61.165 63.158 0.45 0.00 41.91 3.18
814 877 2.642427 CAAAAAGCCCAAAAAGCCTGT 58.358 42.857 0.00 0.00 0.00 4.00
823 886 0.385390 AAAAAGCCTGTGAAGTGCCG 59.615 50.000 0.00 0.00 0.00 5.69
860 923 0.370273 CATACCTCGCTCGCACAAAC 59.630 55.000 0.00 0.00 0.00 2.93
862 925 0.666274 TACCTCGCTCGCACAAACAG 60.666 55.000 0.00 0.00 0.00 3.16
912 978 0.253327 TCTCTCTACTCCGCTCTGCA 59.747 55.000 0.00 0.00 0.00 4.41
936 1002 2.978278 TGCCATTTTCCCCAAATCTGTT 59.022 40.909 0.00 0.00 32.24 3.16
976 1054 1.377333 GCTAGGTTTTCCCTGCGCT 60.377 57.895 9.73 0.00 45.81 5.92
1124 1202 1.112113 TTCTAGCCTCGCCTCGATTT 58.888 50.000 0.00 0.00 34.61 2.17
1307 1386 0.391130 TAGCGCTTGTGTGGATGGAC 60.391 55.000 18.68 0.00 0.00 4.02
1341 1420 1.152419 TTCTGGGTGTCGGAGTGGA 60.152 57.895 0.00 0.00 31.44 4.02
1346 1425 0.395312 GGGTGTCGGAGTGGAGAAAA 59.605 55.000 0.00 0.00 0.00 2.29
1349 1428 2.289444 GGTGTCGGAGTGGAGAAAATCA 60.289 50.000 0.00 0.00 0.00 2.57
1534 1617 0.944386 CCGGTGTTCTGTCAACTTGG 59.056 55.000 0.00 0.00 0.00 3.61
1550 1633 2.363018 GGCCCAGGCTTTCCCTTC 60.363 66.667 8.89 0.00 43.06 3.46
1562 1645 4.158579 GGCTTTCCCTTCAGTTCTTATTGG 59.841 45.833 0.00 0.00 0.00 3.16
1566 1649 3.913799 TCCCTTCAGTTCTTATTGGTCCA 59.086 43.478 0.00 0.00 0.00 4.02
1598 1681 4.196193 TGGCTTAAATACCACCGATTCAG 58.804 43.478 0.00 0.00 0.00 3.02
1602 1685 5.221048 GCTTAAATACCACCGATTCAGCAAT 60.221 40.000 0.00 0.00 0.00 3.56
1631 1715 7.742556 TTGTGAATTTGTGATGTATGTGAGA 57.257 32.000 0.00 0.00 0.00 3.27
1632 1716 7.926674 TGTGAATTTGTGATGTATGTGAGAT 57.073 32.000 0.00 0.00 0.00 2.75
1683 1767 3.953612 ACCTGCACAAGTTTCAGAAATCA 59.046 39.130 0.00 0.00 0.00 2.57
1685 1769 4.037208 CCTGCACAAGTTTCAGAAATCAGT 59.963 41.667 0.00 0.00 0.00 3.41
1911 2015 4.672587 AGTGAAGGGCCTTTTCTTTTTC 57.327 40.909 21.92 5.36 0.00 2.29
1912 2016 4.290093 AGTGAAGGGCCTTTTCTTTTTCT 58.710 39.130 21.92 7.33 0.00 2.52
1915 2019 5.523916 GTGAAGGGCCTTTTCTTTTTCTTTC 59.476 40.000 21.92 2.94 0.00 2.62
1916 2020 5.425217 TGAAGGGCCTTTTCTTTTTCTTTCT 59.575 36.000 21.92 0.00 0.00 2.52
2039 2155 1.414181 CCGTCTTGGAGCACATAGGAT 59.586 52.381 0.00 0.00 42.00 3.24
2085 2204 3.340814 AGTTCCACTGCCATACTGAAG 57.659 47.619 0.00 0.00 0.00 3.02
2108 2227 6.998802 AGTAGAATAGAATGTATGTCAGGCC 58.001 40.000 0.00 0.00 0.00 5.19
2156 2275 2.694109 ACTCGGTTGAGATTAGGTAGCC 59.306 50.000 0.00 0.00 45.57 3.93
2321 2628 7.532682 TTGTTCAGGAATTAAAGCAACAAAC 57.467 32.000 0.00 0.00 31.18 2.93
2487 2796 5.050295 GCTTATACACACTTTTATCGAGGCC 60.050 44.000 0.00 0.00 0.00 5.19
2523 2832 2.292521 ACTCCTAGAGGTCTTCATGCCA 60.293 50.000 0.00 0.00 33.35 4.92
2528 2837 3.278668 AGAGGTCTTCATGCCATCTTG 57.721 47.619 0.00 0.00 0.00 3.02
2562 2871 3.181467 CCTCATGCTCTAGGAGTGGAAAG 60.181 52.174 0.00 0.00 35.47 2.62
2563 2872 2.768527 TCATGCTCTAGGAGTGGAAAGG 59.231 50.000 0.00 0.00 31.39 3.11
2618 3007 4.401519 AGCAGCATCACTTTGCATCTTTAT 59.598 37.500 0.00 0.00 45.23 1.40
2704 3093 0.386352 GTTTGGTTTCCTAACGCCGC 60.386 55.000 0.00 0.00 35.00 6.53
2780 3169 6.763610 CCAAGACTGGAAATGAGGTAAGTATC 59.236 42.308 0.00 0.00 46.92 2.24
2784 3173 7.844779 AGACTGGAAATGAGGTAAGTATCCTAA 59.155 37.037 0.00 0.00 35.20 2.69
2995 3384 8.458843 GCCTAGCTTTCAGTTTGATTTATACAA 58.541 33.333 0.00 0.00 0.00 2.41
3012 3401 8.830201 TTTATACAACTGCAAATTTTGAGCAT 57.170 26.923 13.26 0.00 37.68 3.79
3053 3442 8.988064 ACTACTGTGTGTGAACTATCTATTTG 57.012 34.615 0.00 0.00 0.00 2.32
3055 3444 9.424319 CTACTGTGTGTGAACTATCTATTTGTT 57.576 33.333 0.00 0.00 0.00 2.83
3056 3445 8.677148 ACTGTGTGTGAACTATCTATTTGTTT 57.323 30.769 0.00 0.00 0.00 2.83
3168 3557 1.039068 CATGGTTGGTTGGCTGTTCA 58.961 50.000 0.00 0.00 0.00 3.18
3185 3574 6.093633 GGCTGTTCATTAACTATCGACCTTTT 59.906 38.462 0.00 0.00 36.51 2.27
3200 3589 5.105716 TCGACCTTTTCCAATCTCTAGTCAG 60.106 44.000 0.00 0.00 0.00 3.51
3212 3601 5.968528 TCTCTAGTCAGTCTTTTCCTGTC 57.031 43.478 0.00 0.00 0.00 3.51
3257 3646 3.763360 CCTGAGATGGTTGGTGCAATTTA 59.237 43.478 0.00 0.00 0.00 1.40
3260 3649 6.096705 CCTGAGATGGTTGGTGCAATTTATTA 59.903 38.462 0.00 0.00 0.00 0.98
3262 3651 8.076910 TGAGATGGTTGGTGCAATTTATTATT 57.923 30.769 0.00 0.00 0.00 1.40
3263 3652 8.538701 TGAGATGGTTGGTGCAATTTATTATTT 58.461 29.630 0.00 0.00 0.00 1.40
3264 3653 9.382275 GAGATGGTTGGTGCAATTTATTATTTT 57.618 29.630 0.00 0.00 0.00 1.82
3265 3654 9.737844 AGATGGTTGGTGCAATTTATTATTTTT 57.262 25.926 0.00 0.00 0.00 1.94
3358 3747 5.189928 TGGACATGACGGTAATAGCATTTT 58.810 37.500 0.00 0.00 0.00 1.82
3466 3855 8.627487 TGATGGTAATAAAATTTTCGACATGC 57.373 30.769 6.72 3.00 0.00 4.06
3481 3884 3.367932 CGACATGCCTGTAGTGTTAAGTG 59.632 47.826 0.00 0.00 35.14 3.16
3483 3886 3.326588 ACATGCCTGTAGTGTTAAGTGGA 59.673 43.478 0.00 0.00 32.49 4.02
3488 3891 6.717289 TGCCTGTAGTGTTAAGTGGATATTT 58.283 36.000 0.00 0.00 0.00 1.40
3570 3973 9.386122 ACATATGAATAAACTAGATCAGGGAGT 57.614 33.333 10.38 0.00 0.00 3.85
3640 4043 7.359262 TGTTGTATTTACTGTGGATTTCTCG 57.641 36.000 0.00 0.00 0.00 4.04
3652 4055 4.800993 GTGGATTTCTCGTGATCTACACTG 59.199 45.833 0.00 0.00 46.24 3.66
3686 4090 9.863650 ATTCTGAGATATCATCCACTCAAATTT 57.136 29.630 5.32 0.00 38.60 1.82
3694 4098 4.217334 TCATCCACTCAAATTTTTAGCGCA 59.783 37.500 11.47 0.00 0.00 6.09
3780 4184 1.542915 CCCTCCATTGTGCTGTTTCAG 59.457 52.381 0.00 0.00 34.12 3.02
3789 4193 7.828717 TCCATTGTGCTGTTTCAGATATTCTTA 59.171 33.333 0.66 0.00 32.44 2.10
3790 4194 8.627403 CCATTGTGCTGTTTCAGATATTCTTAT 58.373 33.333 0.66 0.00 32.44 1.73
3791 4195 9.447040 CATTGTGCTGTTTCAGATATTCTTATG 57.553 33.333 0.66 0.00 32.44 1.90
3792 4196 8.791327 TTGTGCTGTTTCAGATATTCTTATGA 57.209 30.769 0.66 0.00 32.44 2.15
3795 4199 8.887717 GTGCTGTTTCAGATATTCTTATGAAGT 58.112 33.333 0.66 0.00 33.53 3.01
3879 4283 5.551760 ATCATTGTTTTCTGTGGACGATC 57.448 39.130 0.00 0.00 0.00 3.69
3941 4389 6.373005 TCCATGTGTTCTGAGAATTCCTTA 57.627 37.500 0.65 0.00 0.00 2.69
4010 4614 4.576463 CAGGTTAGCTGTTTCAGTGTCTTT 59.424 41.667 2.91 0.00 33.43 2.52
4046 4650 4.108336 CAGTTCGGTCAGATATGTCACTG 58.892 47.826 0.00 0.00 35.72 3.66
4119 4724 7.619302 TCAATAACTTATTGCCAAGATCCCTTT 59.381 33.333 14.44 0.00 43.97 3.11
4124 4729 8.379428 ACTTATTGCCAAGATCCCTTTAAATT 57.621 30.769 0.00 0.00 0.00 1.82
4126 4731 6.625532 ATTGCCAAGATCCCTTTAAATTGT 57.374 33.333 0.00 0.00 0.00 2.71
4291 4897 0.608640 ATTTTGACGAGGGAGAGCGT 59.391 50.000 0.00 0.00 44.33 5.07
4695 5342 2.639065 TGAGCAGACCGTGTTCTTTTT 58.361 42.857 0.00 0.00 37.30 1.94
5357 6004 6.347725 GGAAACAAGCTAGTACATGTGACTTG 60.348 42.308 9.11 15.45 39.09 3.16
5369 6016 6.114187 ACATGTGACTTGATAGAACCTGAA 57.886 37.500 0.00 0.00 0.00 3.02
5372 6019 7.120285 ACATGTGACTTGATAGAACCTGAATTG 59.880 37.037 0.00 0.00 0.00 2.32
5640 6287 3.871594 AGTATTTAGAACGTGATGCCTGC 59.128 43.478 0.00 0.00 0.00 4.85
5826 6649 2.941064 GACGCTTTTGGGATACTTACCC 59.059 50.000 0.00 0.00 46.87 3.69
5869 6692 2.233566 TCTTGCAGGCCATCAGGGT 61.234 57.895 5.01 0.00 39.65 4.34
5949 6776 4.927267 ACTTCCATTTCCCACATCTACA 57.073 40.909 0.00 0.00 0.00 2.74
5982 6809 6.378582 TGAACAACTTGACTTCACAACTTTC 58.621 36.000 0.00 0.00 0.00 2.62
5993 6820 0.032615 ACAACTTTCTTGGCCACCCA 60.033 50.000 3.88 0.00 40.06 4.51
6195 7333 2.026262 GGCTTGTCCCTGTAATCCAAGA 60.026 50.000 0.00 0.00 35.64 3.02
6196 7334 3.561313 GGCTTGTCCCTGTAATCCAAGAA 60.561 47.826 0.00 0.00 35.64 2.52
6197 7335 3.691609 GCTTGTCCCTGTAATCCAAGAAG 59.308 47.826 0.00 0.00 35.64 2.85
6227 7365 7.642669 ACTTGTTTAACACATCAGATGAACTG 58.357 34.615 17.81 7.62 46.97 3.16
6228 7366 7.283127 ACTTGTTTAACACATCAGATGAACTGT 59.717 33.333 17.81 8.27 45.86 3.55
6229 7367 7.566760 TGTTTAACACATCAGATGAACTGTT 57.433 32.000 17.81 17.62 45.86 3.16
6230 7368 7.416817 TGTTTAACACATCAGATGAACTGTTG 58.583 34.615 20.53 10.22 46.07 3.33
6231 7369 7.281999 TGTTTAACACATCAGATGAACTGTTGA 59.718 33.333 20.53 13.59 44.48 3.18
6232 7370 5.679734 AACACATCAGATGAACTGTTGAC 57.320 39.130 17.81 0.00 44.48 3.18
6233 7371 4.707105 ACACATCAGATGAACTGTTGACA 58.293 39.130 17.81 0.00 44.48 3.58
6234 7372 5.125356 ACACATCAGATGAACTGTTGACAA 58.875 37.500 17.81 0.00 44.48 3.18
6235 7373 5.008019 ACACATCAGATGAACTGTTGACAAC 59.992 40.000 17.81 11.54 44.48 3.32
6236 7374 4.516698 ACATCAGATGAACTGTTGACAACC 59.483 41.667 17.81 0.87 44.48 3.77
6237 7375 4.149511 TCAGATGAACTGTTGACAACCA 57.850 40.909 15.59 6.66 45.86 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.558009 TCGTACAGAGCAGTTTCGTTAATAT 58.442 36.000 0.00 0.00 0.00 1.28
1 2 5.941733 TCGTACAGAGCAGTTTCGTTAATA 58.058 37.500 0.00 0.00 0.00 0.98
2 3 4.801891 TCGTACAGAGCAGTTTCGTTAAT 58.198 39.130 0.00 0.00 0.00 1.40
3 4 4.227512 TCGTACAGAGCAGTTTCGTTAA 57.772 40.909 0.00 0.00 0.00 2.01
4 5 3.902261 TCGTACAGAGCAGTTTCGTTA 57.098 42.857 0.00 0.00 0.00 3.18
5 6 2.787601 TCGTACAGAGCAGTTTCGTT 57.212 45.000 0.00 0.00 0.00 3.85
6 7 2.596452 CATCGTACAGAGCAGTTTCGT 58.404 47.619 0.00 0.00 0.00 3.85
7 8 1.321743 GCATCGTACAGAGCAGTTTCG 59.678 52.381 0.00 0.00 0.00 3.46
8 9 2.611518 AGCATCGTACAGAGCAGTTTC 58.388 47.619 0.00 0.00 0.00 2.78
9 10 2.751166 AGCATCGTACAGAGCAGTTT 57.249 45.000 0.00 0.00 0.00 2.66
10 11 2.751166 AAGCATCGTACAGAGCAGTT 57.249 45.000 0.00 0.00 0.00 3.16
11 12 2.232452 AGAAAGCATCGTACAGAGCAGT 59.768 45.455 0.00 0.00 0.00 4.40
12 13 2.857152 GAGAAAGCATCGTACAGAGCAG 59.143 50.000 0.00 0.00 0.00 4.24
13 14 2.732282 CGAGAAAGCATCGTACAGAGCA 60.732 50.000 0.00 0.00 35.48 4.26
14 15 1.849219 CGAGAAAGCATCGTACAGAGC 59.151 52.381 0.00 0.00 35.48 4.09
22 23 1.272781 GGTCAGACGAGAAAGCATCG 58.727 55.000 0.00 0.00 45.54 3.84
23 24 2.094494 TCTGGTCAGACGAGAAAGCATC 60.094 50.000 12.58 0.00 29.87 3.91
24 25 1.895798 TCTGGTCAGACGAGAAAGCAT 59.104 47.619 12.58 0.00 29.87 3.79
25 26 1.270826 CTCTGGTCAGACGAGAAAGCA 59.729 52.381 15.43 0.00 32.59 3.91
26 27 1.542030 TCTCTGGTCAGACGAGAAAGC 59.458 52.381 15.43 0.00 32.59 3.51
27 28 2.415357 GCTCTCTGGTCAGACGAGAAAG 60.415 54.545 15.43 13.07 32.59 2.62
28 29 1.542030 GCTCTCTGGTCAGACGAGAAA 59.458 52.381 15.43 2.74 32.59 2.52
29 30 1.169577 GCTCTCTGGTCAGACGAGAA 58.830 55.000 15.43 6.92 32.59 2.87
30 31 0.036875 TGCTCTCTGGTCAGACGAGA 59.963 55.000 14.07 14.07 36.09 4.04
31 32 0.884514 TTGCTCTCTGGTCAGACGAG 59.115 55.000 6.24 6.24 36.59 4.18
32 33 1.328279 TTTGCTCTCTGGTCAGACGA 58.672 50.000 0.00 0.00 33.22 4.20
33 34 2.266554 GATTTGCTCTCTGGTCAGACG 58.733 52.381 0.00 0.00 33.22 4.18
34 35 3.325293 TGATTTGCTCTCTGGTCAGAC 57.675 47.619 0.00 0.00 33.22 3.51
35 36 3.773667 AGATGATTTGCTCTCTGGTCAGA 59.226 43.478 0.45 0.45 35.85 3.27
36 37 4.121317 GAGATGATTTGCTCTCTGGTCAG 58.879 47.826 0.00 0.00 35.95 3.51
37 38 3.773667 AGAGATGATTTGCTCTCTGGTCA 59.226 43.478 0.44 0.00 45.01 4.02
38 39 4.405116 AGAGATGATTTGCTCTCTGGTC 57.595 45.455 0.44 0.00 45.01 4.02
39 40 5.946942 TTAGAGATGATTTGCTCTCTGGT 57.053 39.130 10.34 0.00 45.93 4.00
40 41 6.293516 GCATTTAGAGATGATTTGCTCTCTGG 60.294 42.308 10.34 1.04 45.93 3.86
41 42 6.483974 AGCATTTAGAGATGATTTGCTCTCTG 59.516 38.462 10.34 0.00 45.93 3.35
43 44 6.864360 AGCATTTAGAGATGATTTGCTCTC 57.136 37.500 0.00 0.00 41.46 3.20
44 45 7.390996 CCATAGCATTTAGAGATGATTTGCTCT 59.609 37.037 0.00 0.00 43.48 4.09
45 46 7.528307 CCATAGCATTTAGAGATGATTTGCTC 58.472 38.462 0.00 0.00 39.48 4.26
46 47 6.072064 GCCATAGCATTTAGAGATGATTTGCT 60.072 38.462 0.00 0.00 41.45 3.91
47 48 6.091437 GCCATAGCATTTAGAGATGATTTGC 58.909 40.000 0.00 0.00 39.53 3.68
48 49 6.349944 GGGCCATAGCATTTAGAGATGATTTG 60.350 42.308 4.39 0.00 42.56 2.32
49 50 5.713861 GGGCCATAGCATTTAGAGATGATTT 59.286 40.000 4.39 0.00 42.56 2.17
50 51 5.222192 TGGGCCATAGCATTTAGAGATGATT 60.222 40.000 0.00 0.00 42.56 2.57
51 52 4.290459 TGGGCCATAGCATTTAGAGATGAT 59.710 41.667 0.00 0.00 42.56 2.45
52 53 3.652387 TGGGCCATAGCATTTAGAGATGA 59.348 43.478 0.00 0.00 42.56 2.92
53 54 3.755378 GTGGGCCATAGCATTTAGAGATG 59.245 47.826 10.70 0.00 42.56 2.90
54 55 3.395607 TGTGGGCCATAGCATTTAGAGAT 59.604 43.478 10.70 0.00 42.56 2.75
55 56 2.777114 TGTGGGCCATAGCATTTAGAGA 59.223 45.455 10.70 0.00 42.56 3.10
56 57 3.213206 TGTGGGCCATAGCATTTAGAG 57.787 47.619 10.70 0.00 42.56 2.43
57 58 3.660970 TTGTGGGCCATAGCATTTAGA 57.339 42.857 10.70 0.00 42.56 2.10
58 59 3.701040 AGTTTGTGGGCCATAGCATTTAG 59.299 43.478 10.70 0.00 42.56 1.85
59 60 3.446873 CAGTTTGTGGGCCATAGCATTTA 59.553 43.478 10.70 0.00 42.56 1.40
60 61 2.234414 CAGTTTGTGGGCCATAGCATTT 59.766 45.455 10.70 0.00 42.56 2.32
61 62 1.826720 CAGTTTGTGGGCCATAGCATT 59.173 47.619 10.70 0.00 42.56 3.56
62 63 1.005805 TCAGTTTGTGGGCCATAGCAT 59.994 47.619 10.70 0.00 42.56 3.79
63 64 0.403655 TCAGTTTGTGGGCCATAGCA 59.596 50.000 10.70 0.00 42.56 3.49
64 65 1.544724 TTCAGTTTGTGGGCCATAGC 58.455 50.000 10.70 4.00 38.76 2.97
65 66 4.097892 GGTAATTCAGTTTGTGGGCCATAG 59.902 45.833 10.70 0.00 0.00 2.23
66 67 4.020543 GGTAATTCAGTTTGTGGGCCATA 58.979 43.478 10.70 3.21 0.00 2.74
67 68 2.831526 GGTAATTCAGTTTGTGGGCCAT 59.168 45.455 10.70 0.00 0.00 4.40
68 69 2.158385 AGGTAATTCAGTTTGTGGGCCA 60.158 45.455 0.00 0.00 0.00 5.36
69 70 2.525368 AGGTAATTCAGTTTGTGGGCC 58.475 47.619 0.00 0.00 0.00 5.80
70 71 4.947388 TCATAGGTAATTCAGTTTGTGGGC 59.053 41.667 0.00 0.00 0.00 5.36
71 72 7.122650 ACAATCATAGGTAATTCAGTTTGTGGG 59.877 37.037 0.00 0.00 0.00 4.61
72 73 8.055279 ACAATCATAGGTAATTCAGTTTGTGG 57.945 34.615 0.00 0.00 0.00 4.17
73 74 8.950210 AGACAATCATAGGTAATTCAGTTTGTG 58.050 33.333 0.00 0.00 0.00 3.33
74 75 9.167311 GAGACAATCATAGGTAATTCAGTTTGT 57.833 33.333 0.00 0.00 0.00 2.83
75 76 9.388506 AGAGACAATCATAGGTAATTCAGTTTG 57.611 33.333 0.00 0.00 0.00 2.93
80 81 9.914131 CGATTAGAGACAATCATAGGTAATTCA 57.086 33.333 0.00 0.00 35.09 2.57
81 82 9.915629 ACGATTAGAGACAATCATAGGTAATTC 57.084 33.333 0.00 0.00 35.09 2.17
84 85 8.501580 CGTACGATTAGAGACAATCATAGGTAA 58.498 37.037 10.44 0.00 35.09 2.85
85 86 7.874528 TCGTACGATTAGAGACAATCATAGGTA 59.125 37.037 15.28 0.00 35.09 3.08
86 87 6.709397 TCGTACGATTAGAGACAATCATAGGT 59.291 38.462 15.28 0.00 35.09 3.08
87 88 7.095144 ACTCGTACGATTAGAGACAATCATAGG 60.095 40.741 19.87 2.70 35.09 2.57
88 89 7.742525 CACTCGTACGATTAGAGACAATCATAG 59.257 40.741 19.87 3.06 35.09 2.23
89 90 7.226128 ACACTCGTACGATTAGAGACAATCATA 59.774 37.037 19.87 0.00 35.09 2.15
90 91 6.038382 ACACTCGTACGATTAGAGACAATCAT 59.962 38.462 19.87 0.00 35.09 2.45
91 92 5.353400 ACACTCGTACGATTAGAGACAATCA 59.647 40.000 19.87 0.00 35.09 2.57
92 93 5.808403 ACACTCGTACGATTAGAGACAATC 58.192 41.667 19.87 0.00 36.03 2.67
93 94 5.814764 ACACTCGTACGATTAGAGACAAT 57.185 39.130 19.87 0.00 36.03 2.71
94 95 5.388111 CAACACTCGTACGATTAGAGACAA 58.612 41.667 19.87 0.00 36.03 3.18
95 96 4.142752 CCAACACTCGTACGATTAGAGACA 60.143 45.833 19.87 0.00 36.03 3.41
96 97 4.093998 TCCAACACTCGTACGATTAGAGAC 59.906 45.833 19.87 0.00 36.03 3.36
97 98 4.093998 GTCCAACACTCGTACGATTAGAGA 59.906 45.833 19.87 8.97 36.03 3.10
98 99 4.142752 TGTCCAACACTCGTACGATTAGAG 60.143 45.833 19.87 9.21 37.96 2.43
99 100 3.752747 TGTCCAACACTCGTACGATTAGA 59.247 43.478 19.87 6.28 0.00 2.10
100 101 4.087510 TGTCCAACACTCGTACGATTAG 57.912 45.455 19.87 13.62 0.00 1.73
101 102 4.216042 TCTTGTCCAACACTCGTACGATTA 59.784 41.667 19.87 0.00 0.00 1.75
102 103 3.005050 TCTTGTCCAACACTCGTACGATT 59.995 43.478 19.87 10.82 0.00 3.34
103 104 2.555325 TCTTGTCCAACACTCGTACGAT 59.445 45.455 19.87 6.41 0.00 3.73
104 105 1.948834 TCTTGTCCAACACTCGTACGA 59.051 47.619 18.41 18.41 0.00 3.43
105 106 2.410785 TCTTGTCCAACACTCGTACG 57.589 50.000 9.53 9.53 0.00 3.67
106 107 3.678548 GGATTCTTGTCCAACACTCGTAC 59.321 47.826 0.00 0.00 38.20 3.67
107 108 3.322541 TGGATTCTTGTCCAACACTCGTA 59.677 43.478 0.00 0.00 45.03 3.43
108 109 2.104111 TGGATTCTTGTCCAACACTCGT 59.896 45.455 0.00 0.00 45.03 4.18
109 110 2.766313 TGGATTCTTGTCCAACACTCG 58.234 47.619 0.00 0.00 45.03 4.18
117 118 4.437682 TGGGTATGATGGATTCTTGTCC 57.562 45.455 0.00 0.00 38.81 4.02
118 119 5.645497 GCTATGGGTATGATGGATTCTTGTC 59.355 44.000 0.00 0.00 0.00 3.18
119 120 5.073554 TGCTATGGGTATGATGGATTCTTGT 59.926 40.000 0.00 0.00 0.00 3.16
120 121 5.563592 TGCTATGGGTATGATGGATTCTTG 58.436 41.667 0.00 0.00 0.00 3.02
121 122 5.848286 TGCTATGGGTATGATGGATTCTT 57.152 39.130 0.00 0.00 0.00 2.52
122 123 5.280882 CCTTGCTATGGGTATGATGGATTCT 60.281 44.000 0.00 0.00 0.00 2.40
123 124 4.946157 CCTTGCTATGGGTATGATGGATTC 59.054 45.833 0.00 0.00 0.00 2.52
124 125 4.354987 ACCTTGCTATGGGTATGATGGATT 59.645 41.667 0.00 0.00 33.59 3.01
125 126 3.918912 ACCTTGCTATGGGTATGATGGAT 59.081 43.478 0.00 0.00 33.59 3.41
126 127 3.326521 ACCTTGCTATGGGTATGATGGA 58.673 45.455 0.00 0.00 33.59 3.41
127 128 3.795688 ACCTTGCTATGGGTATGATGG 57.204 47.619 0.00 0.00 33.59 3.51
128 129 4.717877 TGAACCTTGCTATGGGTATGATG 58.282 43.478 0.00 0.00 35.09 3.07
129 130 5.589367 ATGAACCTTGCTATGGGTATGAT 57.411 39.130 0.00 0.00 35.09 2.45
130 131 6.702449 ATATGAACCTTGCTATGGGTATGA 57.298 37.500 0.00 0.00 35.09 2.15
133 134 9.953565 GTTAATATATGAACCTTGCTATGGGTA 57.046 33.333 1.78 0.00 35.09 3.69
134 135 8.444783 TGTTAATATATGAACCTTGCTATGGGT 58.555 33.333 10.03 0.00 37.44 4.51
135 136 8.862325 TGTTAATATATGAACCTTGCTATGGG 57.138 34.615 10.03 0.00 0.00 4.00
138 139 9.014297 GCCTTGTTAATATATGAACCTTGCTAT 57.986 33.333 10.03 0.00 0.00 2.97
139 140 7.172532 CGCCTTGTTAATATATGAACCTTGCTA 59.827 37.037 10.03 0.00 0.00 3.49
140 141 6.017109 CGCCTTGTTAATATATGAACCTTGCT 60.017 38.462 10.03 0.00 0.00 3.91
141 142 6.142817 CGCCTTGTTAATATATGAACCTTGC 58.857 40.000 10.03 8.44 0.00 4.01
142 143 6.142817 GCGCCTTGTTAATATATGAACCTTG 58.857 40.000 10.03 0.79 0.00 3.61
143 144 5.240844 GGCGCCTTGTTAATATATGAACCTT 59.759 40.000 22.15 0.00 0.00 3.50
144 145 4.760204 GGCGCCTTGTTAATATATGAACCT 59.240 41.667 22.15 0.00 0.00 3.50
145 146 4.517453 TGGCGCCTTGTTAATATATGAACC 59.483 41.667 29.70 0.00 0.00 3.62
146 147 5.682943 TGGCGCCTTGTTAATATATGAAC 57.317 39.130 29.70 6.05 0.00 3.18
147 148 6.701145 TTTGGCGCCTTGTTAATATATGAA 57.299 33.333 29.70 4.82 0.00 2.57
148 149 6.701145 TTTTGGCGCCTTGTTAATATATGA 57.299 33.333 29.70 0.00 0.00 2.15
149 150 6.978080 ACTTTTTGGCGCCTTGTTAATATATG 59.022 34.615 29.70 6.81 0.00 1.78
150 151 7.107639 ACTTTTTGGCGCCTTGTTAATATAT 57.892 32.000 29.70 0.00 0.00 0.86
151 152 6.151312 TGACTTTTTGGCGCCTTGTTAATATA 59.849 34.615 29.70 0.00 0.00 0.86
152 153 5.047660 TGACTTTTTGGCGCCTTGTTAATAT 60.048 36.000 29.70 4.56 0.00 1.28
153 154 4.278669 TGACTTTTTGGCGCCTTGTTAATA 59.721 37.500 29.70 5.17 0.00 0.98
154 155 3.068873 TGACTTTTTGGCGCCTTGTTAAT 59.931 39.130 29.70 7.69 0.00 1.40
155 156 2.427453 TGACTTTTTGGCGCCTTGTTAA 59.573 40.909 29.70 10.44 0.00 2.01
156 157 2.025155 TGACTTTTTGGCGCCTTGTTA 58.975 42.857 29.70 12.38 0.00 2.41
157 158 0.820871 TGACTTTTTGGCGCCTTGTT 59.179 45.000 29.70 6.78 0.00 2.83
158 159 1.039856 ATGACTTTTTGGCGCCTTGT 58.960 45.000 29.70 17.90 0.00 3.16
159 160 2.153366 AATGACTTTTTGGCGCCTTG 57.847 45.000 29.70 14.78 0.00 3.61
160 161 2.482864 CAAATGACTTTTTGGCGCCTT 58.517 42.857 29.70 7.02 33.81 4.35
161 162 1.873486 GCAAATGACTTTTTGGCGCCT 60.873 47.619 29.70 5.42 37.13 5.52
162 163 0.512518 GCAAATGACTTTTTGGCGCC 59.487 50.000 22.73 22.73 37.13 6.53
166 167 2.926778 TGGGGCAAATGACTTTTTGG 57.073 45.000 0.00 0.00 37.13 3.28
167 168 7.823799 ACTTTATATGGGGCAAATGACTTTTTG 59.176 33.333 0.00 0.00 39.16 2.44
168 169 7.917003 ACTTTATATGGGGCAAATGACTTTTT 58.083 30.769 0.00 0.00 0.00 1.94
169 170 7.494922 ACTTTATATGGGGCAAATGACTTTT 57.505 32.000 0.00 0.00 0.00 2.27
170 171 7.494922 AACTTTATATGGGGCAAATGACTTT 57.505 32.000 0.00 0.00 0.00 2.66
171 172 7.180051 TCAAACTTTATATGGGGCAAATGACTT 59.820 33.333 0.00 0.00 0.00 3.01
172 173 6.667414 TCAAACTTTATATGGGGCAAATGACT 59.333 34.615 0.00 0.00 0.00 3.41
173 174 6.756542 GTCAAACTTTATATGGGGCAAATGAC 59.243 38.462 0.00 0.00 0.00 3.06
174 175 6.405286 CGTCAAACTTTATATGGGGCAAATGA 60.405 38.462 0.00 0.00 0.00 2.57
175 176 5.748152 CGTCAAACTTTATATGGGGCAAATG 59.252 40.000 0.00 0.00 0.00 2.32
176 177 5.163457 CCGTCAAACTTTATATGGGGCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
177 178 4.158764 CCGTCAAACTTTATATGGGGCAAA 59.841 41.667 0.00 0.00 0.00 3.68
178 179 3.697045 CCGTCAAACTTTATATGGGGCAA 59.303 43.478 0.00 0.00 0.00 4.52
179 180 3.283751 CCGTCAAACTTTATATGGGGCA 58.716 45.455 0.00 0.00 0.00 5.36
180 181 2.621526 CCCGTCAAACTTTATATGGGGC 59.378 50.000 5.78 0.00 34.94 5.80
181 182 3.630312 CACCCGTCAAACTTTATATGGGG 59.370 47.826 14.03 0.00 41.71 4.96
182 183 3.630312 CCACCCGTCAAACTTTATATGGG 59.370 47.826 10.11 10.11 42.87 4.00
183 184 3.630312 CCCACCCGTCAAACTTTATATGG 59.370 47.826 0.00 0.00 0.00 2.74
184 185 3.630312 CCCCACCCGTCAAACTTTATATG 59.370 47.826 0.00 0.00 0.00 1.78
185 186 3.893521 CCCCACCCGTCAAACTTTATAT 58.106 45.455 0.00 0.00 0.00 0.86
186 187 2.618559 GCCCCACCCGTCAAACTTTATA 60.619 50.000 0.00 0.00 0.00 0.98
187 188 1.889262 GCCCCACCCGTCAAACTTTAT 60.889 52.381 0.00 0.00 0.00 1.40
188 189 0.537828 GCCCCACCCGTCAAACTTTA 60.538 55.000 0.00 0.00 0.00 1.85
189 190 1.830847 GCCCCACCCGTCAAACTTT 60.831 57.895 0.00 0.00 0.00 2.66
190 191 2.203437 GCCCCACCCGTCAAACTT 60.203 61.111 0.00 0.00 0.00 2.66
212 213 0.391661 TTCTCTCAATGGCGAGTGGC 60.392 55.000 0.00 0.00 42.51 5.01
213 214 1.649664 CTTCTCTCAATGGCGAGTGG 58.350 55.000 0.00 0.00 34.46 4.00
217 218 4.941609 GCCTTCTCTCAATGGCGA 57.058 55.556 0.00 0.00 35.79 5.54
229 230 2.566724 TGGGGTTTCATGATTTGCCTTC 59.433 45.455 0.00 0.00 0.00 3.46
242 249 4.020543 TGCACCACTTTATATGGGGTTTC 58.979 43.478 0.00 0.00 43.17 2.78
252 259 5.999205 TTGGATCATTTGCACCACTTTAT 57.001 34.783 0.00 0.00 31.87 1.40
261 268 3.033184 GAGGGGATTTGGATCATTTGCA 58.967 45.455 0.00 0.00 33.77 4.08
264 271 6.296605 CCTTTTTGAGGGGATTTGGATCATTT 60.297 38.462 0.00 0.00 42.26 2.32
312 323 8.207350 TCTTTTCTCTTTAGGAATTCTGGAGA 57.793 34.615 5.23 8.39 0.00 3.71
331 344 5.652744 ATTATGTCACCGCGTATCTTTTC 57.347 39.130 4.92 0.00 0.00 2.29
420 434 6.461509 CGGAAATTTATTCCCTTCCATTCTGG 60.462 42.308 1.83 0.00 37.75 3.86
425 439 7.675161 ATTTCGGAAATTTATTCCCTTCCAT 57.325 32.000 10.11 0.00 37.75 3.41
448 462 7.018150 TCCCAATATCATGCCTGGATAAAAAT 58.982 34.615 0.00 0.00 31.51 1.82
458 472 3.299503 GGTTGTTCCCAATATCATGCCT 58.700 45.455 0.00 0.00 32.11 4.75
560 619 6.073980 GCCGGTCTTTCCTTTTCAATTTTTAC 60.074 38.462 1.90 0.00 0.00 2.01
580 639 2.203788 TTCTCCCTGTCTGCCGGT 60.204 61.111 1.90 0.00 0.00 5.28
762 822 0.730494 GCAGCGTTGAACAGAATGCC 60.730 55.000 2.38 0.00 42.53 4.40
794 854 2.355444 CACAGGCTTTTTGGGCTTTTTG 59.645 45.455 0.00 0.00 40.17 2.44
844 907 1.956170 CTGTTTGTGCGAGCGAGGT 60.956 57.895 0.00 0.00 0.00 3.85
912 978 3.008266 CAGATTTGGGGAAAATGGCAAGT 59.992 43.478 0.00 0.00 38.64 3.16
936 1002 4.830046 GCTCTCTCTCTCTCTCTCTCTCTA 59.170 50.000 0.00 0.00 0.00 2.43
976 1054 2.440247 TCCTGCTGGATCGCTCGA 60.440 61.111 8.48 0.00 37.46 4.04
1179 1257 1.970917 GATCACAGAAACGCCCGCAG 61.971 60.000 0.00 0.00 0.00 5.18
1258 1336 4.080751 CCTAAAACCCTACCCATCGAAGAA 60.081 45.833 0.00 0.00 43.58 2.52
1341 1420 4.142315 CGCCCATGAATTCAGTGATTTTCT 60.142 41.667 14.54 0.00 0.00 2.52
1346 1425 2.019249 CACGCCCATGAATTCAGTGAT 58.981 47.619 14.54 0.00 0.00 3.06
1349 1428 0.608856 TGCACGCCCATGAATTCAGT 60.609 50.000 14.54 2.87 0.00 3.41
1534 1617 1.680314 CTGAAGGGAAAGCCTGGGC 60.680 63.158 3.00 3.00 42.33 5.36
1550 1633 8.731275 TGTATGTTATGGACCAATAAGAACTG 57.269 34.615 0.00 0.00 0.00 3.16
1562 1645 8.512138 GGTATTTAAGCCATGTATGTTATGGAC 58.488 37.037 8.13 0.35 46.42 4.02
1566 1649 7.174253 CGGTGGTATTTAAGCCATGTATGTTAT 59.826 37.037 0.00 0.00 37.09 1.89
1598 1681 8.020861 ACATCACAAATTCACAATAACATTGC 57.979 30.769 0.00 0.00 0.00 3.56
1602 1685 9.623350 CACATACATCACAAATTCACAATAACA 57.377 29.630 0.00 0.00 0.00 2.41
1632 1716 8.344831 GCTGTCAATATAGCACATGTTCAAATA 58.655 33.333 0.00 0.00 39.50 1.40
1694 1779 9.571816 TTACATGATACATCATCAATTGCCTTA 57.428 29.630 0.00 0.00 46.66 2.69
1703 1788 9.317936 GAAACTCTGTTACATGATACATCATCA 57.682 33.333 0.00 0.00 45.23 3.07
1743 1847 1.478137 CTAGTATCGCTGTCGGTTGC 58.522 55.000 0.00 0.00 36.13 4.17
1911 2015 4.559153 CCCATTGTTTGCCTTGTAGAAAG 58.441 43.478 0.00 0.00 0.00 2.62
1912 2016 3.244044 GCCCATTGTTTGCCTTGTAGAAA 60.244 43.478 0.00 0.00 0.00 2.52
1915 2019 1.617850 TGCCCATTGTTTGCCTTGTAG 59.382 47.619 0.00 0.00 0.00 2.74
1916 2020 1.617850 CTGCCCATTGTTTGCCTTGTA 59.382 47.619 0.00 0.00 0.00 2.41
1997 2102 9.991388 GACGGTAGCATATTGTTTGTATTAAAA 57.009 29.630 0.00 0.00 0.00 1.52
1998 2103 9.386010 AGACGGTAGCATATTGTTTGTATTAAA 57.614 29.630 0.00 0.00 0.00 1.52
2085 2204 6.166982 GGGCCTGACATACATTCTATTCTAC 58.833 44.000 0.84 0.00 0.00 2.59
2108 2227 0.394352 GCCTCTATTGTGTGGTGGGG 60.394 60.000 0.00 0.00 0.00 4.96
2156 2275 8.627208 AATAGAATAATATCAACAGTGGCAGG 57.373 34.615 0.00 0.00 0.00 4.85
2188 2494 1.523154 GGTCCATTGCACGCCAGAAA 61.523 55.000 0.00 0.00 0.00 2.52
2195 2501 1.915614 GCTGTCTGGTCCATTGCACG 61.916 60.000 0.00 0.00 0.00 5.34
2321 2628 2.089201 TGGCACTGATCAGATTTGCAG 58.911 47.619 29.27 10.03 31.81 4.41
2523 2832 0.921896 AGGGTATGGCAGCACAAGAT 59.078 50.000 0.00 0.00 0.00 2.40
2528 2837 1.450531 GCATGAGGGTATGGCAGCAC 61.451 60.000 0.00 0.00 0.00 4.40
2563 2872 3.748568 CCTTTCTGGACTAAACTGCTGTC 59.251 47.826 0.00 0.00 38.35 3.51
2704 3093 2.187958 TCTCCTGGAATGGTACCACTG 58.812 52.381 19.09 8.76 33.57 3.66
2780 3169 9.853177 ATTAGGGATCTTACACAAAATCTTAGG 57.147 33.333 0.00 0.00 0.00 2.69
2784 3173 7.872138 TGGATTAGGGATCTTACACAAAATCT 58.128 34.615 0.00 0.00 35.02 2.40
2995 3384 3.069872 TGTCCATGCTCAAAATTTGCAGT 59.930 39.130 0.00 0.00 40.18 4.40
3012 3401 7.439955 CACACAGTAGTAAGTGTATTTTGTCCA 59.560 37.037 8.77 0.00 46.44 4.02
3023 3412 7.594714 AGATAGTTCACACACAGTAGTAAGTG 58.405 38.462 3.19 3.19 41.40 3.16
3168 3557 8.487028 AGAGATTGGAAAAGGTCGATAGTTAAT 58.513 33.333 0.00 0.00 37.40 1.40
3185 3574 6.019748 AGGAAAAGACTGACTAGAGATTGGA 58.980 40.000 0.00 0.00 0.00 3.53
3200 3589 7.703328 TCACAAATAAGTTGACAGGAAAAGAC 58.297 34.615 0.00 0.00 39.87 3.01
3212 3601 8.017373 CAGGATACACAGTTCACAAATAAGTTG 58.983 37.037 0.00 0.00 40.94 3.16
3262 3651 5.248640 TGGTTCCATTTGCTGAAACAAAAA 58.751 33.333 0.00 0.00 42.45 1.94
3263 3652 4.836825 TGGTTCCATTTGCTGAAACAAAA 58.163 34.783 0.00 0.00 42.45 2.44
3264 3653 4.478206 TGGTTCCATTTGCTGAAACAAA 57.522 36.364 0.00 0.00 43.27 2.83
3265 3654 4.187694 GTTGGTTCCATTTGCTGAAACAA 58.812 39.130 0.00 0.00 43.76 2.83
3266 3655 3.736433 CGTTGGTTCCATTTGCTGAAACA 60.736 43.478 0.00 0.00 36.45 2.83
3267 3656 2.794350 CGTTGGTTCCATTTGCTGAAAC 59.206 45.455 0.00 0.00 0.00 2.78
3277 3666 2.086869 CATCTGCTTCGTTGGTTCCAT 58.913 47.619 0.00 0.00 0.00 3.41
3358 3747 8.356657 CCACAATAAACAATTAAAGAGTGTCCA 58.643 33.333 0.00 0.00 35.09 4.02
3430 3819 7.490962 TTTTATTACCATCATGGCTAACTCG 57.509 36.000 2.52 0.00 42.67 4.18
3457 3846 2.831685 AACACTACAGGCATGTCGAA 57.168 45.000 7.56 0.00 41.01 3.71
3459 3848 3.367932 CACTTAACACTACAGGCATGTCG 59.632 47.826 7.56 3.86 41.01 4.35
3465 3854 7.625828 AAAATATCCACTTAACACTACAGGC 57.374 36.000 0.00 0.00 0.00 4.85
3508 3911 9.607285 GTAATAACTAACCAACAAACACATCTG 57.393 33.333 0.00 0.00 0.00 2.90
3570 3973 4.847198 ACAATGATTGCATCTGGTCTGTA 58.153 39.130 4.84 0.00 32.35 2.74
3571 3974 3.693807 ACAATGATTGCATCTGGTCTGT 58.306 40.909 4.84 0.00 32.35 3.41
3617 4020 7.117236 TCACGAGAAATCCACAGTAAATACAAC 59.883 37.037 0.00 0.00 0.00 3.32
3640 4043 6.420306 CAGAATGCTCATACAGTGTAGATCAC 59.580 42.308 9.25 0.00 46.46 3.06
3652 4055 7.492020 GTGGATGATATCTCAGAATGCTCATAC 59.508 40.741 3.98 0.00 34.12 2.39
3686 4090 3.769739 ATATGGAGTGGATGCGCTAAA 57.230 42.857 9.73 0.00 0.00 1.85
3694 4098 6.328410 TCAGAACAGATGAATATGGAGTGGAT 59.672 38.462 0.00 0.00 0.00 3.41
3790 4194 9.803315 GATGTTGTACTGATTCATACTACTTCA 57.197 33.333 17.85 10.29 34.44 3.02
3879 4283 7.880160 TTTGAGTCCACAATAAATAGGATGG 57.120 36.000 0.00 0.00 31.91 3.51
3984 4432 4.718961 ACACTGAAACAGCTAACCTGATT 58.281 39.130 0.00 0.00 44.64 2.57
3988 4436 4.423625 AAGACACTGAAACAGCTAACCT 57.576 40.909 0.00 0.00 34.37 3.50
3989 4437 6.803154 ATAAAGACACTGAAACAGCTAACC 57.197 37.500 0.00 0.00 34.37 2.85
4010 4614 8.525316 TCTGACCGAACTGACAAATAAGTTATA 58.475 33.333 0.00 0.00 36.77 0.98
4537 5184 0.042708 GCTGCAGTATCACGAATGCG 60.043 55.000 16.64 0.00 41.58 4.73
5325 5972 6.177310 TGTACTAGCTTGTTTCCTGGTTAA 57.823 37.500 6.03 0.00 0.00 2.01
5369 6016 6.892658 TTATGCTACACCAAACAGAACAAT 57.107 33.333 0.00 0.00 0.00 2.71
5372 6019 6.142817 CAGTTTATGCTACACCAAACAGAAC 58.857 40.000 8.48 0.00 34.15 3.01
5640 6287 2.351726 GGGCATAGTACTTTCACTTGCG 59.648 50.000 0.00 0.00 35.36 4.85
5776 6599 3.235200 ACACACTAGAAGAGCTGTCCTT 58.765 45.455 0.00 0.00 0.00 3.36
5826 6649 2.094182 ACATGGTAGTGTAGCACCTTCG 60.094 50.000 0.00 0.00 39.21 3.79
5885 6708 5.106791 GCCATGCTTGTGCTGTAATATAGAG 60.107 44.000 0.00 0.00 40.48 2.43
5949 6776 6.998074 TGAAGTCAAGTTGTTCAATAGGACAT 59.002 34.615 2.11 4.66 0.00 3.06
5982 6809 1.679977 CAGGTGATGGGTGGCCAAG 60.680 63.158 7.24 0.00 0.00 3.61
5993 6820 4.532126 TCCAGAGTGTGTTTATCAGGTGAT 59.468 41.667 0.00 0.00 38.51 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.