Multiple sequence alignment - TraesCS5D01G385900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G385900 chr5D 100.000 3332 0 0 1 3332 455613202 455616533 0.000000e+00 6154
1 TraesCS5D01G385900 chr5D 81.273 550 84 12 1485 2017 54098215 54098762 8.540000e-116 427
2 TraesCS5D01G385900 chr5D 79.056 339 56 8 1694 2017 321998742 321999080 5.600000e-53 219
3 TraesCS5D01G385900 chr5B 92.879 3005 133 36 4 2981 557353531 557356481 0.000000e+00 4289
4 TraesCS5D01G385900 chr5B 81.091 550 85 12 1485 2017 56979795 56980342 3.970000e-114 422
5 TraesCS5D01G385900 chr5B 80.952 294 47 6 1154 1441 56979419 56979709 1.200000e-54 224
6 TraesCS5D01G385900 chrUn 91.044 2568 100 44 4 2506 63673942 63676444 0.000000e+00 3349
7 TraesCS5D01G385900 chrUn 82.439 205 11 8 2742 2929 63677114 63677310 4.450000e-34 156
8 TraesCS5D01G385900 chrUn 85.965 114 8 1 2627 2740 63676451 63676556 7.550000e-22 115
9 TraesCS5D01G385900 chr6A 95.442 351 15 1 2982 3332 48502850 48503199 2.900000e-155 558
10 TraesCS5D01G385900 chr1B 94.842 349 18 0 2982 3330 97630272 97629924 2.260000e-151 545
11 TraesCS5D01G385900 chr1D 94.872 351 12 1 2982 3332 51805534 51805190 8.130000e-151 544
12 TraesCS5D01G385900 chr1D 94.318 352 14 1 2981 3332 51755840 51755495 4.890000e-148 534
13 TraesCS5D01G385900 chr2D 94.872 351 10 3 2982 3332 481971242 481970900 2.920000e-150 542
14 TraesCS5D01G385900 chr2B 94.101 356 20 1 2978 3332 495023744 495023389 1.050000e-149 540
15 TraesCS5D01G385900 chr2B 83.333 348 49 7 1493 1836 723045812 723046154 2.500000e-81 313
16 TraesCS5D01G385900 chr7D 93.503 354 23 0 2979 3332 549319526 549319879 8.190000e-146 527
17 TraesCS5D01G385900 chr4B 93.113 363 19 1 2970 3332 145840220 145839864 8.190000e-146 527
18 TraesCS5D01G385900 chr6B 93.277 357 20 2 2977 3332 671876521 671876874 1.060000e-144 523
19 TraesCS5D01G385900 chr5A 80.797 552 83 11 1485 2017 42259919 42260466 8.600000e-111 411
20 TraesCS5D01G385900 chr5A 84.470 264 37 3 1154 1415 42259543 42259804 1.190000e-64 257
21 TraesCS5D01G385900 chr3B 79.412 544 88 15 1493 2017 813200859 813200321 2.440000e-96 363
22 TraesCS5D01G385900 chr7A 78.442 552 98 13 1485 2018 17262443 17262991 1.140000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G385900 chr5D 455613202 455616533 3331 False 6154.000000 6154 100.000000 1 3332 1 chr5D.!!$F3 3331
1 TraesCS5D01G385900 chr5D 54098215 54098762 547 False 427.000000 427 81.273000 1485 2017 1 chr5D.!!$F1 532
2 TraesCS5D01G385900 chr5B 557353531 557356481 2950 False 4289.000000 4289 92.879000 4 2981 1 chr5B.!!$F1 2977
3 TraesCS5D01G385900 chr5B 56979419 56980342 923 False 323.000000 422 81.021500 1154 2017 2 chr5B.!!$F2 863
4 TraesCS5D01G385900 chrUn 63673942 63677310 3368 False 1206.666667 3349 86.482667 4 2929 3 chrUn.!!$F1 2925
5 TraesCS5D01G385900 chr5A 42259543 42260466 923 False 334.000000 411 82.633500 1154 2017 2 chr5A.!!$F1 863
6 TraesCS5D01G385900 chr3B 813200321 813200859 538 True 363.000000 363 79.412000 1493 2017 1 chr3B.!!$R1 524
7 TraesCS5D01G385900 chr7A 17262443 17262991 548 False 340.000000 340 78.442000 1485 2018 1 chr7A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1064 0.099436 GGTAGTACGTGCAGGTACCG 59.901 60.0 34.37 17.37 42.95 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2692 2840 0.179225 GTGTTGACGCGGCATTGTAG 60.179 55.0 19.26 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 80 2.542907 CGCTGCGTTTCAACACCCT 61.543 57.895 14.93 0.00 0.00 4.34
89 96 1.971357 ACCCTGCATTACCTAGATCGG 59.029 52.381 0.00 0.00 0.00 4.18
143 163 1.888512 GAATCCAAGTGAAAGCCAGCA 59.111 47.619 0.00 0.00 0.00 4.41
146 166 1.035139 CCAAGTGAAAGCCAGCAAGT 58.965 50.000 0.00 0.00 0.00 3.16
148 168 2.030805 CCAAGTGAAAGCCAGCAAGTAC 60.031 50.000 0.00 0.00 0.00 2.73
176 196 2.044848 AACACCACCACGTGCCAA 60.045 55.556 10.91 0.00 37.25 4.52
202 236 2.715046 TCTACCACGTACCACCAGTAG 58.285 52.381 0.00 0.00 0.00 2.57
235 269 0.671251 CCTGCTGGACGGATCTACTC 59.329 60.000 2.92 0.00 34.57 2.59
236 270 0.671251 CTGCTGGACGGATCTACTCC 59.329 60.000 0.00 0.00 41.07 3.85
237 271 0.259065 TGCTGGACGGATCTACTCCT 59.741 55.000 0.00 0.00 42.47 3.69
238 272 1.493446 TGCTGGACGGATCTACTCCTA 59.507 52.381 0.00 0.00 42.47 2.94
239 273 1.881324 GCTGGACGGATCTACTCCTAC 59.119 57.143 0.00 0.00 42.47 3.18
240 274 2.487625 GCTGGACGGATCTACTCCTACT 60.488 54.545 0.00 0.00 42.47 2.57
712 773 2.486663 TATCCACGCGGTCGCATCT 61.487 57.895 12.47 0.00 42.06 2.90
886 966 2.048222 ACACTGGACACCATCGCG 60.048 61.111 0.00 0.00 30.82 5.87
972 1052 1.086696 TACGACGTGCCAGGTAGTAC 58.913 55.000 11.56 0.00 0.00 2.73
973 1053 1.226211 CGACGTGCCAGGTAGTACG 60.226 63.158 0.00 0.64 41.86 3.67
974 1054 4.085876 ACGTGCCAGGTAGTACGT 57.914 55.556 1.96 1.96 43.98 3.57
975 1055 1.582968 ACGTGCCAGGTAGTACGTG 59.417 57.895 14.70 14.70 46.55 4.49
976 1056 1.804326 CGTGCCAGGTAGTACGTGC 60.804 63.158 15.94 12.15 33.03 5.34
980 1060 1.885163 GCCAGGTAGTACGTGCAGGT 61.885 60.000 17.24 17.24 33.03 4.00
982 1062 1.133790 CCAGGTAGTACGTGCAGGTAC 59.866 57.143 32.35 32.35 42.41 3.34
983 1063 1.133790 CAGGTAGTACGTGCAGGTACC 59.866 57.143 34.37 26.57 42.95 3.34
984 1064 0.099436 GGTAGTACGTGCAGGTACCG 59.901 60.000 34.37 17.37 42.95 4.02
986 1066 1.980951 TAGTACGTGCAGGTACCGCG 61.981 60.000 34.37 16.02 42.95 6.46
987 1067 4.781959 TACGTGCAGGTACCGCGC 62.782 66.667 23.59 23.59 39.61 6.86
990 1070 3.488090 GTGCAGGTACCGCGCTTC 61.488 66.667 25.14 16.69 36.93 3.86
1339 1419 4.435436 TCGCGGCGATGCTGTTCT 62.435 61.111 22.69 0.00 37.24 3.01
2031 2175 1.303799 CCAGCAGCGCACTCAATTCT 61.304 55.000 11.47 0.00 0.00 2.40
2034 2178 1.986575 GCAGCGCACTCAATTCTCCC 61.987 60.000 11.47 0.00 0.00 4.30
2145 2289 2.049433 ACGAACGCGGAGAAGGTG 60.049 61.111 12.47 0.00 43.17 4.00
2403 2550 2.665008 TATGCATGACGCTGAGGCCC 62.665 60.000 10.16 0.00 43.06 5.80
2437 2584 2.596862 GCGCGTGTTCTTTTGTTCTTTT 59.403 40.909 8.43 0.00 0.00 2.27
2442 2589 5.220024 GCGTGTTCTTTTGTTCTTTTCACTG 60.220 40.000 0.00 0.00 0.00 3.66
2467 2615 4.250305 ACTGACGTGTGGGGTGCC 62.250 66.667 0.00 0.00 0.00 5.01
2517 2665 4.344865 GCCGAGTTTGGAGGCCCA 62.345 66.667 0.00 0.00 44.80 5.36
2535 2683 3.431207 GCCCAATGGAGGAATTGAATGTG 60.431 47.826 0.00 0.00 39.46 3.21
2547 2695 2.174363 TGAATGTGTGAGAGCCTGTG 57.826 50.000 0.00 0.00 0.00 3.66
2574 2722 4.006989 TGTGGTTCATTGTGTATGCTACC 58.993 43.478 0.00 0.00 38.30 3.18
2579 2727 4.722361 TCATTGTGTATGCTACCGTACA 57.278 40.909 0.00 0.00 40.27 2.90
2645 2793 1.065854 CCTCTGATTGACACCTGGTCC 60.066 57.143 0.00 0.00 46.38 4.46
2649 2797 0.320374 GATTGACACCTGGTCCGACA 59.680 55.000 0.00 0.00 46.38 4.35
2656 2804 0.396695 ACCTGGTCCGACATACCGAT 60.397 55.000 0.00 0.00 40.08 4.18
2686 2834 0.252835 ATGCCCCCTTTTCCATGCTT 60.253 50.000 0.00 0.00 0.00 3.91
2687 2835 0.904394 TGCCCCCTTTTCCATGCTTC 60.904 55.000 0.00 0.00 0.00 3.86
2688 2836 0.904394 GCCCCCTTTTCCATGCTTCA 60.904 55.000 0.00 0.00 0.00 3.02
2689 2837 1.643310 CCCCCTTTTCCATGCTTCAA 58.357 50.000 0.00 0.00 0.00 2.69
2690 2838 1.551883 CCCCCTTTTCCATGCTTCAAG 59.448 52.381 0.00 0.00 0.00 3.02
2691 2839 1.066645 CCCCTTTTCCATGCTTCAAGC 60.067 52.381 1.04 1.04 42.82 4.01
2692 2840 1.066645 CCCTTTTCCATGCTTCAAGCC 60.067 52.381 7.01 0.00 41.51 4.35
2693 2841 1.897802 CCTTTTCCATGCTTCAAGCCT 59.102 47.619 7.01 0.00 41.51 4.58
2805 3516 6.040878 GCCATAGTACACACAAACTAGTAGG 58.959 44.000 0.00 0.00 32.01 3.18
2875 3602 8.154856 AGATCAACTTTAGTTACTAACCTTGCA 58.845 33.333 4.09 0.00 36.32 4.08
2890 3617 4.677182 ACCTTGCAAAACCTCTTCCATAT 58.323 39.130 0.00 0.00 0.00 1.78
2891 3618 5.086621 ACCTTGCAAAACCTCTTCCATATT 58.913 37.500 0.00 0.00 0.00 1.28
2892 3619 6.252995 ACCTTGCAAAACCTCTTCCATATTA 58.747 36.000 0.00 0.00 0.00 0.98
2951 3678 5.046304 TGGAGGTAGATCTTTGTTCTCCAAG 60.046 44.000 20.13 0.00 44.07 3.61
2955 3682 1.740025 GATCTTTGTTCTCCAAGGCCG 59.260 52.381 0.00 0.00 33.75 6.13
2956 3683 0.762418 TCTTTGTTCTCCAAGGCCGA 59.238 50.000 0.00 0.00 33.75 5.54
2966 3693 3.199946 TCTCCAAGGCCGAGATACATTTT 59.800 43.478 4.84 0.00 31.39 1.82
2981 3708 9.415544 GAGATACATTTTCATGTTGCTCTTTTT 57.584 29.630 0.00 0.00 41.16 1.94
3008 3735 7.793927 TTTTTGAAACGGAGGCAAAATATTT 57.206 28.000 0.00 0.00 40.09 1.40
3009 3736 6.777526 TTTGAAACGGAGGCAAAATATTTG 57.222 33.333 0.39 0.00 0.00 2.32
3010 3737 4.241681 TGAAACGGAGGCAAAATATTTGC 58.758 39.130 17.18 17.18 44.22 3.68
3022 3749 7.928908 GCAAAATATTTGCCTCATCGATTAA 57.071 32.000 15.12 0.00 39.38 1.40
3023 3750 8.524870 GCAAAATATTTGCCTCATCGATTAAT 57.475 30.769 15.12 0.00 39.38 1.40
3024 3751 8.981647 GCAAAATATTTGCCTCATCGATTAATT 58.018 29.630 15.12 0.00 39.38 1.40
3031 3758 8.731275 TTTGCCTCATCGATTAATTAAGAAGA 57.269 30.769 3.94 3.72 0.00 2.87
3032 3759 8.731275 TTGCCTCATCGATTAATTAAGAAGAA 57.269 30.769 3.94 0.00 0.00 2.52
3033 3760 8.370493 TGCCTCATCGATTAATTAAGAAGAAG 57.630 34.615 3.94 1.26 0.00 2.85
3034 3761 8.204160 TGCCTCATCGATTAATTAAGAAGAAGA 58.796 33.333 3.94 5.03 0.00 2.87
3035 3762 8.707839 GCCTCATCGATTAATTAAGAAGAAGAG 58.292 37.037 16.89 16.89 0.00 2.85
3036 3763 9.973450 CCTCATCGATTAATTAAGAAGAAGAGA 57.027 33.333 21.25 12.30 0.00 3.10
3042 3769 9.657121 CGATTAATTAAGAAGAAGAGAATTGCC 57.343 33.333 3.94 0.00 0.00 4.52
3043 3770 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
3044 3771 8.877864 TTAATTAAGAAGAAGAGAATTGCCCA 57.122 30.769 0.00 0.00 0.00 5.36
3045 3772 7.401955 AATTAAGAAGAAGAGAATTGCCCAG 57.598 36.000 0.00 0.00 0.00 4.45
3046 3773 4.379302 AAGAAGAAGAGAATTGCCCAGT 57.621 40.909 0.00 0.00 0.00 4.00
3047 3774 4.379302 AGAAGAAGAGAATTGCCCAGTT 57.621 40.909 0.00 0.00 0.00 3.16
3048 3775 5.505181 AGAAGAAGAGAATTGCCCAGTTA 57.495 39.130 0.00 0.00 0.00 2.24
3049 3776 5.880901 AGAAGAAGAGAATTGCCCAGTTAA 58.119 37.500 0.00 0.00 0.00 2.01
3050 3777 6.488715 AGAAGAAGAGAATTGCCCAGTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
3051 3778 6.950619 AGAAGAAGAGAATTGCCCAGTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
3052 3779 7.452813 AGAAGAAGAGAATTGCCCAGTTAATTT 59.547 33.333 0.00 0.00 0.00 1.82
3053 3780 7.544804 AGAAGAGAATTGCCCAGTTAATTTT 57.455 32.000 0.00 0.00 0.00 1.82
3054 3781 7.606349 AGAAGAGAATTGCCCAGTTAATTTTC 58.394 34.615 0.00 0.00 31.31 2.29
3055 3782 5.954335 AGAGAATTGCCCAGTTAATTTTCG 58.046 37.500 0.00 0.00 34.45 3.46
3056 3783 5.710099 AGAGAATTGCCCAGTTAATTTTCGA 59.290 36.000 0.00 0.00 34.45 3.71
3057 3784 6.208599 AGAGAATTGCCCAGTTAATTTTCGAA 59.791 34.615 0.00 0.00 34.45 3.71
3058 3785 6.754193 AGAATTGCCCAGTTAATTTTCGAAA 58.246 32.000 6.47 6.47 0.00 3.46
3059 3786 7.213678 AGAATTGCCCAGTTAATTTTCGAAAA 58.786 30.769 24.43 24.43 0.00 2.29
3060 3787 7.713073 AGAATTGCCCAGTTAATTTTCGAAAAA 59.287 29.630 25.77 9.08 0.00 1.94
3061 3788 6.591313 TTGCCCAGTTAATTTTCGAAAAAC 57.409 33.333 25.77 19.07 0.00 2.43
3062 3789 5.051153 TGCCCAGTTAATTTTCGAAAAACC 58.949 37.500 25.77 13.88 0.00 3.27
3063 3790 4.149221 GCCCAGTTAATTTTCGAAAAACCG 59.851 41.667 25.77 12.57 0.00 4.44
3064 3791 5.521544 CCCAGTTAATTTTCGAAAAACCGA 58.478 37.500 25.77 10.57 36.70 4.69
3065 3792 5.627780 CCCAGTTAATTTTCGAAAAACCGAG 59.372 40.000 25.77 14.22 39.90 4.63
3066 3793 5.116528 CCAGTTAATTTTCGAAAAACCGAGC 59.883 40.000 25.77 14.06 39.90 5.03
3067 3794 4.907582 AGTTAATTTTCGAAAAACCGAGCG 59.092 37.500 25.77 0.00 39.90 5.03
3068 3795 3.612472 AATTTTCGAAAAACCGAGCGA 57.388 38.095 25.77 1.42 39.90 4.93
3069 3796 3.612472 ATTTTCGAAAAACCGAGCGAA 57.388 38.095 25.77 0.65 39.90 4.70
3070 3797 3.402058 TTTTCGAAAAACCGAGCGAAA 57.598 38.095 20.56 0.00 46.81 3.46
3071 3798 3.402058 TTTCGAAAAACCGAGCGAAAA 57.598 38.095 8.44 0.00 45.91 2.29
3072 3799 2.372148 TCGAAAAACCGAGCGAAAAC 57.628 45.000 0.00 0.00 34.19 2.43
3073 3800 1.003652 TCGAAAAACCGAGCGAAAACC 60.004 47.619 0.00 0.00 34.19 3.27
3074 3801 1.391787 GAAAAACCGAGCGAAAACCG 58.608 50.000 0.00 0.00 42.21 4.44
3075 3802 1.003652 GAAAAACCGAGCGAAAACCGA 60.004 47.619 0.00 0.00 41.76 4.69
3076 3803 1.232119 AAAACCGAGCGAAAACCGAT 58.768 45.000 0.00 0.00 41.76 4.18
3077 3804 2.083167 AAACCGAGCGAAAACCGATA 57.917 45.000 0.00 0.00 41.76 2.92
3078 3805 1.353076 AACCGAGCGAAAACCGATAC 58.647 50.000 0.00 0.00 41.76 2.24
3079 3806 0.244450 ACCGAGCGAAAACCGATACA 59.756 50.000 0.00 0.00 41.76 2.29
3080 3807 1.337074 ACCGAGCGAAAACCGATACAA 60.337 47.619 0.00 0.00 41.76 2.41
3081 3808 1.727880 CCGAGCGAAAACCGATACAAA 59.272 47.619 0.00 0.00 41.76 2.83
3082 3809 2.473376 CCGAGCGAAAACCGATACAAAC 60.473 50.000 0.00 0.00 41.76 2.93
3083 3810 2.156117 CGAGCGAAAACCGATACAAACA 59.844 45.455 0.00 0.00 41.76 2.83
3084 3811 3.363182 CGAGCGAAAACCGATACAAACAA 60.363 43.478 0.00 0.00 41.76 2.83
3085 3812 3.880610 AGCGAAAACCGATACAAACAAC 58.119 40.909 0.00 0.00 41.76 3.32
3086 3813 2.975193 GCGAAAACCGATACAAACAACC 59.025 45.455 0.00 0.00 41.76 3.77
3087 3814 3.557508 CGAAAACCGATACAAACAACCC 58.442 45.455 0.00 0.00 41.76 4.11
3088 3815 3.557508 GAAAACCGATACAAACAACCCG 58.442 45.455 0.00 0.00 0.00 5.28
3089 3816 2.547299 AACCGATACAAACAACCCGA 57.453 45.000 0.00 0.00 0.00 5.14
3090 3817 2.547299 ACCGATACAAACAACCCGAA 57.453 45.000 0.00 0.00 0.00 4.30
3091 3818 2.848691 ACCGATACAAACAACCCGAAA 58.151 42.857 0.00 0.00 0.00 3.46
3092 3819 2.549329 ACCGATACAAACAACCCGAAAC 59.451 45.455 0.00 0.00 0.00 2.78
3093 3820 2.548904 CCGATACAAACAACCCGAAACA 59.451 45.455 0.00 0.00 0.00 2.83
3094 3821 3.364565 CCGATACAAACAACCCGAAACAG 60.365 47.826 0.00 0.00 0.00 3.16
3095 3822 3.364565 CGATACAAACAACCCGAAACAGG 60.365 47.826 0.00 0.00 0.00 4.00
3096 3823 0.458260 ACAAACAACCCGAAACAGGC 59.542 50.000 0.00 0.00 0.00 4.85
3097 3824 0.744281 CAAACAACCCGAAACAGGCT 59.256 50.000 0.00 0.00 0.00 4.58
3098 3825 1.950909 CAAACAACCCGAAACAGGCTA 59.049 47.619 0.00 0.00 0.00 3.93
3099 3826 1.601166 AACAACCCGAAACAGGCTAC 58.399 50.000 0.00 0.00 0.00 3.58
3100 3827 0.763035 ACAACCCGAAACAGGCTACT 59.237 50.000 0.00 0.00 0.00 2.57
3101 3828 1.270678 ACAACCCGAAACAGGCTACTC 60.271 52.381 0.00 0.00 0.00 2.59
3102 3829 0.037605 AACCCGAAACAGGCTACTCG 60.038 55.000 5.38 5.38 0.00 4.18
3103 3830 4.496670 CCGAAACAGGCTACTCGG 57.503 61.111 14.32 14.32 44.31 4.63
3104 3831 1.153628 CCGAAACAGGCTACTCGGG 60.154 63.158 18.43 1.78 45.62 5.14
3105 3832 1.601419 CCGAAACAGGCTACTCGGGA 61.601 60.000 18.43 0.00 45.62 5.14
3106 3833 0.245539 CGAAACAGGCTACTCGGGAA 59.754 55.000 0.00 0.00 0.00 3.97
3107 3834 1.736032 CGAAACAGGCTACTCGGGAAG 60.736 57.143 0.00 0.00 0.00 3.46
3108 3835 0.036294 AAACAGGCTACTCGGGAAGC 60.036 55.000 0.00 0.00 38.03 3.86
3109 3836 1.192146 AACAGGCTACTCGGGAAGCA 61.192 55.000 0.00 0.00 40.61 3.91
3110 3837 1.153549 CAGGCTACTCGGGAAGCAC 60.154 63.158 0.00 0.00 40.61 4.40
3111 3838 2.202756 GGCTACTCGGGAAGCACG 60.203 66.667 0.00 0.00 40.61 5.34
3112 3839 2.707849 GGCTACTCGGGAAGCACGA 61.708 63.158 0.00 0.00 40.61 4.35
3113 3840 1.214589 GCTACTCGGGAAGCACGAA 59.785 57.895 0.00 0.00 40.16 3.85
3114 3841 0.389426 GCTACTCGGGAAGCACGAAA 60.389 55.000 0.00 0.00 40.16 3.46
3115 3842 1.347320 CTACTCGGGAAGCACGAAAC 58.653 55.000 0.00 0.00 40.16 2.78
3116 3843 0.675083 TACTCGGGAAGCACGAAACA 59.325 50.000 0.00 0.00 40.16 2.83
3117 3844 0.878961 ACTCGGGAAGCACGAAACAC 60.879 55.000 0.00 0.00 40.16 3.32
3118 3845 1.566018 CTCGGGAAGCACGAAACACC 61.566 60.000 0.00 0.00 40.16 4.16
3119 3846 2.943653 GGGAAGCACGAAACACCG 59.056 61.111 0.00 0.00 0.00 4.94
3120 3847 1.890510 GGGAAGCACGAAACACCGT 60.891 57.895 0.00 0.00 44.43 4.83
3126 3853 4.113681 ACGAAACACCGTGACCAC 57.886 55.556 5.28 0.00 41.70 4.16
3127 3854 1.218585 ACGAAACACCGTGACCACA 59.781 52.632 5.28 0.00 41.70 4.17
3128 3855 1.085501 ACGAAACACCGTGACCACAC 61.086 55.000 5.28 0.00 41.70 3.82
3129 3856 1.084935 CGAAACACCGTGACCACACA 61.085 55.000 5.28 0.00 46.20 3.72
3130 3857 0.655733 GAAACACCGTGACCACACAG 59.344 55.000 5.28 0.00 46.20 3.66
3131 3858 0.250793 AAACACCGTGACCACACAGA 59.749 50.000 5.28 0.00 46.20 3.41
3132 3859 0.461339 AACACCGTGACCACACAGAC 60.461 55.000 5.28 0.00 46.20 3.51
3133 3860 1.142965 CACCGTGACCACACAGACA 59.857 57.895 0.00 0.00 46.20 3.41
3134 3861 0.461163 CACCGTGACCACACAGACAA 60.461 55.000 0.00 0.00 46.20 3.18
3135 3862 0.461339 ACCGTGACCACACAGACAAC 60.461 55.000 0.00 0.00 46.20 3.32
3136 3863 1.157870 CCGTGACCACACAGACAACC 61.158 60.000 0.00 0.00 46.20 3.77
3137 3864 1.157870 CGTGACCACACAGACAACCC 61.158 60.000 0.00 0.00 46.20 4.11
3138 3865 1.145156 TGACCACACAGACAACCCG 59.855 57.895 0.00 0.00 0.00 5.28
3139 3866 1.145377 GACCACACAGACAACCCGT 59.855 57.895 0.00 0.00 0.00 5.28
3140 3867 0.878961 GACCACACAGACAACCCGTC 60.879 60.000 0.00 0.00 45.77 4.79
3147 3874 4.379174 GACAACCCGTCACATGCT 57.621 55.556 0.00 0.00 44.69 3.79
3148 3875 2.162716 GACAACCCGTCACATGCTC 58.837 57.895 0.00 0.00 44.69 4.26
3149 3876 1.298859 GACAACCCGTCACATGCTCC 61.299 60.000 0.00 0.00 44.69 4.70
3150 3877 1.003355 CAACCCGTCACATGCTCCT 60.003 57.895 0.00 0.00 0.00 3.69
3151 3878 0.249120 CAACCCGTCACATGCTCCTA 59.751 55.000 0.00 0.00 0.00 2.94
3152 3879 0.981183 AACCCGTCACATGCTCCTAA 59.019 50.000 0.00 0.00 0.00 2.69
3153 3880 0.249398 ACCCGTCACATGCTCCTAAC 59.751 55.000 0.00 0.00 0.00 2.34
3154 3881 0.249120 CCCGTCACATGCTCCTAACA 59.751 55.000 0.00 0.00 0.00 2.41
3155 3882 1.359848 CCGTCACATGCTCCTAACAC 58.640 55.000 0.00 0.00 0.00 3.32
3156 3883 1.337728 CCGTCACATGCTCCTAACACA 60.338 52.381 0.00 0.00 0.00 3.72
3157 3884 1.726791 CGTCACATGCTCCTAACACAC 59.273 52.381 0.00 0.00 0.00 3.82
3158 3885 2.766313 GTCACATGCTCCTAACACACA 58.234 47.619 0.00 0.00 0.00 3.72
3159 3886 3.138304 GTCACATGCTCCTAACACACAA 58.862 45.455 0.00 0.00 0.00 3.33
3160 3887 3.058914 GTCACATGCTCCTAACACACAAC 60.059 47.826 0.00 0.00 0.00 3.32
3161 3888 2.877786 CACATGCTCCTAACACACAACA 59.122 45.455 0.00 0.00 0.00 3.33
3162 3889 3.314913 CACATGCTCCTAACACACAACAA 59.685 43.478 0.00 0.00 0.00 2.83
3163 3890 4.022935 CACATGCTCCTAACACACAACAAT 60.023 41.667 0.00 0.00 0.00 2.71
3164 3891 4.216257 ACATGCTCCTAACACACAACAATC 59.784 41.667 0.00 0.00 0.00 2.67
3165 3892 3.814625 TGCTCCTAACACACAACAATCA 58.185 40.909 0.00 0.00 0.00 2.57
3166 3893 4.397420 TGCTCCTAACACACAACAATCAT 58.603 39.130 0.00 0.00 0.00 2.45
3167 3894 5.555966 TGCTCCTAACACACAACAATCATA 58.444 37.500 0.00 0.00 0.00 2.15
3168 3895 5.411361 TGCTCCTAACACACAACAATCATAC 59.589 40.000 0.00 0.00 0.00 2.39
3169 3896 5.163754 GCTCCTAACACACAACAATCATACC 60.164 44.000 0.00 0.00 0.00 2.73
3170 3897 6.121776 TCCTAACACACAACAATCATACCT 57.878 37.500 0.00 0.00 0.00 3.08
3171 3898 6.170506 TCCTAACACACAACAATCATACCTC 58.829 40.000 0.00 0.00 0.00 3.85
3172 3899 5.937540 CCTAACACACAACAATCATACCTCA 59.062 40.000 0.00 0.00 0.00 3.86
3173 3900 5.689383 AACACACAACAATCATACCTCAC 57.311 39.130 0.00 0.00 0.00 3.51
3174 3901 4.072131 ACACACAACAATCATACCTCACC 58.928 43.478 0.00 0.00 0.00 4.02
3175 3902 4.071423 CACACAACAATCATACCTCACCA 58.929 43.478 0.00 0.00 0.00 4.17
3176 3903 4.072131 ACACAACAATCATACCTCACCAC 58.928 43.478 0.00 0.00 0.00 4.16
3177 3904 4.071423 CACAACAATCATACCTCACCACA 58.929 43.478 0.00 0.00 0.00 4.17
3178 3905 4.072131 ACAACAATCATACCTCACCACAC 58.928 43.478 0.00 0.00 0.00 3.82
3179 3906 4.202461 ACAACAATCATACCTCACCACACT 60.202 41.667 0.00 0.00 0.00 3.55
3180 3907 4.640771 ACAATCATACCTCACCACACTT 57.359 40.909 0.00 0.00 0.00 3.16
3181 3908 4.326826 ACAATCATACCTCACCACACTTG 58.673 43.478 0.00 0.00 0.00 3.16
3182 3909 2.472695 TCATACCTCACCACACTTGC 57.527 50.000 0.00 0.00 0.00 4.01
3183 3910 1.696884 TCATACCTCACCACACTTGCA 59.303 47.619 0.00 0.00 0.00 4.08
3184 3911 1.806542 CATACCTCACCACACTTGCAC 59.193 52.381 0.00 0.00 0.00 4.57
3185 3912 0.833949 TACCTCACCACACTTGCACA 59.166 50.000 0.00 0.00 0.00 4.57
3186 3913 0.034574 ACCTCACCACACTTGCACAA 60.035 50.000 0.00 0.00 0.00 3.33
3187 3914 0.381801 CCTCACCACACTTGCACAAC 59.618 55.000 0.00 0.00 0.00 3.32
3188 3915 1.382522 CTCACCACACTTGCACAACT 58.617 50.000 0.00 0.00 0.00 3.16
3189 3916 1.331756 CTCACCACACTTGCACAACTC 59.668 52.381 0.00 0.00 0.00 3.01
3190 3917 1.093972 CACCACACTTGCACAACTCA 58.906 50.000 0.00 0.00 0.00 3.41
3191 3918 1.472082 CACCACACTTGCACAACTCAA 59.528 47.619 0.00 0.00 0.00 3.02
3192 3919 1.472480 ACCACACTTGCACAACTCAAC 59.528 47.619 0.00 0.00 0.00 3.18
3193 3920 1.472082 CCACACTTGCACAACTCAACA 59.528 47.619 0.00 0.00 0.00 3.33
3194 3921 2.478370 CCACACTTGCACAACTCAACAG 60.478 50.000 0.00 0.00 0.00 3.16
3195 3922 2.419673 CACACTTGCACAACTCAACAGA 59.580 45.455 0.00 0.00 0.00 3.41
3196 3923 3.081061 ACACTTGCACAACTCAACAGAA 58.919 40.909 0.00 0.00 0.00 3.02
3197 3924 3.119849 ACACTTGCACAACTCAACAGAAC 60.120 43.478 0.00 0.00 0.00 3.01
3198 3925 2.423538 ACTTGCACAACTCAACAGAACC 59.576 45.455 0.00 0.00 0.00 3.62
3199 3926 1.388547 TGCACAACTCAACAGAACCC 58.611 50.000 0.00 0.00 0.00 4.11
3200 3927 1.064758 TGCACAACTCAACAGAACCCT 60.065 47.619 0.00 0.00 0.00 4.34
3201 3928 1.334869 GCACAACTCAACAGAACCCTG 59.665 52.381 0.00 0.00 45.76 4.45
3202 3929 2.917933 CACAACTCAACAGAACCCTGA 58.082 47.619 0.00 0.00 43.02 3.86
3203 3930 2.614057 CACAACTCAACAGAACCCTGAC 59.386 50.000 0.00 0.00 43.02 3.51
3204 3931 2.238646 ACAACTCAACAGAACCCTGACA 59.761 45.455 0.00 0.00 43.02 3.58
3205 3932 3.278574 CAACTCAACAGAACCCTGACAA 58.721 45.455 0.00 0.00 43.02 3.18
3206 3933 3.199880 ACTCAACAGAACCCTGACAAG 57.800 47.619 0.00 0.00 43.02 3.16
3207 3934 2.771943 ACTCAACAGAACCCTGACAAGA 59.228 45.455 0.00 0.00 43.02 3.02
3208 3935 3.392616 ACTCAACAGAACCCTGACAAGAT 59.607 43.478 0.00 0.00 43.02 2.40
3209 3936 3.999663 CTCAACAGAACCCTGACAAGATC 59.000 47.826 0.00 0.00 43.02 2.75
3210 3937 3.390967 TCAACAGAACCCTGACAAGATCA 59.609 43.478 0.00 0.00 43.02 2.92
3211 3938 3.409026 ACAGAACCCTGACAAGATCAC 57.591 47.619 0.00 0.00 43.02 3.06
3212 3939 2.039084 ACAGAACCCTGACAAGATCACC 59.961 50.000 0.00 0.00 43.02 4.02
3213 3940 2.038952 CAGAACCCTGACAAGATCACCA 59.961 50.000 0.00 0.00 43.02 4.17
3214 3941 2.711009 AGAACCCTGACAAGATCACCAA 59.289 45.455 0.00 0.00 32.37 3.67
3215 3942 2.568623 ACCCTGACAAGATCACCAAC 57.431 50.000 0.00 0.00 32.37 3.77
3216 3943 1.774254 ACCCTGACAAGATCACCAACA 59.226 47.619 0.00 0.00 32.37 3.33
3217 3944 2.174639 ACCCTGACAAGATCACCAACAA 59.825 45.455 0.00 0.00 32.37 2.83
3218 3945 2.554032 CCCTGACAAGATCACCAACAAC 59.446 50.000 0.00 0.00 32.37 3.32
3219 3946 2.224079 CCTGACAAGATCACCAACAACG 59.776 50.000 0.00 0.00 32.37 4.10
3220 3947 3.130633 CTGACAAGATCACCAACAACGA 58.869 45.455 0.00 0.00 32.37 3.85
3221 3948 3.738982 TGACAAGATCACCAACAACGAT 58.261 40.909 0.00 0.00 29.99 3.73
3222 3949 3.498018 TGACAAGATCACCAACAACGATG 59.502 43.478 0.00 0.00 29.99 3.84
3223 3950 3.738982 ACAAGATCACCAACAACGATGA 58.261 40.909 0.00 0.00 0.00 2.92
3224 3951 3.498397 ACAAGATCACCAACAACGATGAC 59.502 43.478 0.00 0.00 0.00 3.06
3225 3952 3.685139 AGATCACCAACAACGATGACT 57.315 42.857 0.00 0.00 0.00 3.41
3226 3953 3.589988 AGATCACCAACAACGATGACTC 58.410 45.455 0.00 0.00 0.00 3.36
3238 3965 3.914555 CGATGACTCGGACAATCAAAG 57.085 47.619 0.00 0.00 41.27 2.77
3239 3966 2.029728 CGATGACTCGGACAATCAAAGC 59.970 50.000 0.00 0.00 41.27 3.51
3240 3967 2.542020 TGACTCGGACAATCAAAGCA 57.458 45.000 0.00 0.00 0.00 3.91
3241 3968 2.844946 TGACTCGGACAATCAAAGCAA 58.155 42.857 0.00 0.00 0.00 3.91
3242 3969 2.548057 TGACTCGGACAATCAAAGCAAC 59.452 45.455 0.00 0.00 0.00 4.17
3243 3970 2.548057 GACTCGGACAATCAAAGCAACA 59.452 45.455 0.00 0.00 0.00 3.33
3244 3971 3.149196 ACTCGGACAATCAAAGCAACAT 58.851 40.909 0.00 0.00 0.00 2.71
3245 3972 3.189287 ACTCGGACAATCAAAGCAACATC 59.811 43.478 0.00 0.00 0.00 3.06
3246 3973 2.159430 TCGGACAATCAAAGCAACATCG 59.841 45.455 0.00 0.00 0.00 3.84
3247 3974 2.159430 CGGACAATCAAAGCAACATCGA 59.841 45.455 0.00 0.00 0.00 3.59
3248 3975 3.492313 GGACAATCAAAGCAACATCGAC 58.508 45.455 0.00 0.00 0.00 4.20
3249 3976 3.058293 GGACAATCAAAGCAACATCGACA 60.058 43.478 0.00 0.00 0.00 4.35
3250 3977 4.536065 GACAATCAAAGCAACATCGACAA 58.464 39.130 0.00 0.00 0.00 3.18
3251 3978 4.290155 ACAATCAAAGCAACATCGACAAC 58.710 39.130 0.00 0.00 0.00 3.32
3252 3979 4.202000 ACAATCAAAGCAACATCGACAACA 60.202 37.500 0.00 0.00 0.00 3.33
3253 3980 3.332761 TCAAAGCAACATCGACAACAC 57.667 42.857 0.00 0.00 0.00 3.32
3254 3981 2.680339 TCAAAGCAACATCGACAACACA 59.320 40.909 0.00 0.00 0.00 3.72
3255 3982 3.127721 TCAAAGCAACATCGACAACACAA 59.872 39.130 0.00 0.00 0.00 3.33
3256 3983 3.338818 AAGCAACATCGACAACACAAG 57.661 42.857 0.00 0.00 0.00 3.16
3257 3984 2.560504 AGCAACATCGACAACACAAGA 58.439 42.857 0.00 0.00 0.00 3.02
3258 3985 2.942376 AGCAACATCGACAACACAAGAA 59.058 40.909 0.00 0.00 0.00 2.52
3259 3986 3.376859 AGCAACATCGACAACACAAGAAA 59.623 39.130 0.00 0.00 0.00 2.52
3260 3987 3.482110 GCAACATCGACAACACAAGAAAC 59.518 43.478 0.00 0.00 0.00 2.78
3261 3988 4.730613 GCAACATCGACAACACAAGAAACT 60.731 41.667 0.00 0.00 0.00 2.66
3262 3989 5.503357 GCAACATCGACAACACAAGAAACTA 60.503 40.000 0.00 0.00 0.00 2.24
3263 3990 6.482835 CAACATCGACAACACAAGAAACTAA 58.517 36.000 0.00 0.00 0.00 2.24
3264 3991 6.287107 ACATCGACAACACAAGAAACTAAG 57.713 37.500 0.00 0.00 0.00 2.18
3265 3992 4.789095 TCGACAACACAAGAAACTAAGC 57.211 40.909 0.00 0.00 0.00 3.09
3266 3993 4.185394 TCGACAACACAAGAAACTAAGCA 58.815 39.130 0.00 0.00 0.00 3.91
3267 3994 4.814234 TCGACAACACAAGAAACTAAGCAT 59.186 37.500 0.00 0.00 0.00 3.79
3268 3995 5.050363 TCGACAACACAAGAAACTAAGCATC 60.050 40.000 0.00 0.00 0.00 3.91
3269 3996 5.277297 CGACAACACAAGAAACTAAGCATCA 60.277 40.000 0.00 0.00 0.00 3.07
3270 3997 6.566564 CGACAACACAAGAAACTAAGCATCAT 60.567 38.462 0.00 0.00 0.00 2.45
3271 3998 6.672147 ACAACACAAGAAACTAAGCATCATC 58.328 36.000 0.00 0.00 0.00 2.92
3272 3999 5.886960 ACACAAGAAACTAAGCATCATCC 57.113 39.130 0.00 0.00 0.00 3.51
3273 4000 5.316167 ACACAAGAAACTAAGCATCATCCA 58.684 37.500 0.00 0.00 0.00 3.41
3274 4001 5.948162 ACACAAGAAACTAAGCATCATCCAT 59.052 36.000 0.00 0.00 0.00 3.41
3275 4002 6.094603 ACACAAGAAACTAAGCATCATCCATC 59.905 38.462 0.00 0.00 0.00 3.51
3276 4003 6.094464 CACAAGAAACTAAGCATCATCCATCA 59.906 38.462 0.00 0.00 0.00 3.07
3277 4004 6.660521 ACAAGAAACTAAGCATCATCCATCAA 59.339 34.615 0.00 0.00 0.00 2.57
3278 4005 6.939132 AGAAACTAAGCATCATCCATCAAG 57.061 37.500 0.00 0.00 0.00 3.02
3279 4006 6.656902 AGAAACTAAGCATCATCCATCAAGA 58.343 36.000 0.00 0.00 0.00 3.02
3280 4007 7.114754 AGAAACTAAGCATCATCCATCAAGAA 58.885 34.615 0.00 0.00 0.00 2.52
3281 4008 7.613022 AGAAACTAAGCATCATCCATCAAGAAA 59.387 33.333 0.00 0.00 0.00 2.52
3282 4009 6.690194 ACTAAGCATCATCCATCAAGAAAC 57.310 37.500 0.00 0.00 0.00 2.78
3283 4010 4.996788 AAGCATCATCCATCAAGAAACC 57.003 40.909 0.00 0.00 0.00 3.27
3284 4011 2.947652 AGCATCATCCATCAAGAAACCG 59.052 45.455 0.00 0.00 0.00 4.44
3285 4012 2.542411 GCATCATCCATCAAGAAACCGC 60.542 50.000 0.00 0.00 0.00 5.68
3286 4013 2.488204 TCATCCATCAAGAAACCGCA 57.512 45.000 0.00 0.00 0.00 5.69
3287 4014 2.358957 TCATCCATCAAGAAACCGCAG 58.641 47.619 0.00 0.00 0.00 5.18
3288 4015 2.027285 TCATCCATCAAGAAACCGCAGA 60.027 45.455 0.00 0.00 0.00 4.26
3289 4016 1.808411 TCCATCAAGAAACCGCAGAC 58.192 50.000 0.00 0.00 0.00 3.51
3290 4017 0.443869 CCATCAAGAAACCGCAGACG 59.556 55.000 0.00 0.00 39.67 4.18
3291 4018 0.179215 CATCAAGAAACCGCAGACGC 60.179 55.000 0.00 0.00 38.22 5.19
3292 4019 0.320771 ATCAAGAAACCGCAGACGCT 60.321 50.000 0.00 0.00 38.22 5.07
3293 4020 0.531974 TCAAGAAACCGCAGACGCTT 60.532 50.000 0.00 0.00 38.22 4.68
3294 4021 0.307760 CAAGAAACCGCAGACGCTTT 59.692 50.000 0.00 0.00 38.22 3.51
3295 4022 0.586802 AAGAAACCGCAGACGCTTTC 59.413 50.000 0.00 0.00 41.87 2.62
3296 4023 1.206831 GAAACCGCAGACGCTTTCC 59.793 57.895 0.00 0.00 37.72 3.13
3297 4024 2.183858 GAAACCGCAGACGCTTTCCC 62.184 60.000 0.00 0.00 37.72 3.97
3298 4025 2.951475 AAACCGCAGACGCTTTCCCA 62.951 55.000 0.00 0.00 38.22 4.37
3299 4026 2.436646 CCGCAGACGCTTTCCCAT 60.437 61.111 0.00 0.00 38.22 4.00
3300 4027 2.040544 CCGCAGACGCTTTCCCATT 61.041 57.895 0.00 0.00 38.22 3.16
3301 4028 0.742990 CCGCAGACGCTTTCCCATTA 60.743 55.000 0.00 0.00 38.22 1.90
3302 4029 0.652592 CGCAGACGCTTTCCCATTAG 59.347 55.000 0.00 0.00 35.30 1.73
3303 4030 0.378610 GCAGACGCTTTCCCATTAGC 59.621 55.000 0.00 0.00 34.30 3.09
3308 4035 2.179764 GCTTTCCCATTAGCGCACA 58.820 52.632 11.47 0.00 0.00 4.57
3309 4036 0.179163 GCTTTCCCATTAGCGCACAC 60.179 55.000 11.47 0.00 0.00 3.82
3310 4037 1.164411 CTTTCCCATTAGCGCACACA 58.836 50.000 11.47 0.00 0.00 3.72
3311 4038 0.878416 TTTCCCATTAGCGCACACAC 59.122 50.000 11.47 0.00 0.00 3.82
3312 4039 0.958382 TTCCCATTAGCGCACACACC 60.958 55.000 11.47 0.00 0.00 4.16
3313 4040 2.749865 CCCATTAGCGCACACACCG 61.750 63.158 11.47 0.00 0.00 4.94
3314 4041 2.749865 CCATTAGCGCACACACCGG 61.750 63.158 11.47 0.00 0.00 5.28
3315 4042 3.124921 ATTAGCGCACACACCGGC 61.125 61.111 11.47 0.00 0.00 6.13
3321 4048 3.737172 GCACACACCGGCCACATC 61.737 66.667 0.00 0.00 0.00 3.06
3322 4049 2.281414 CACACACCGGCCACATCA 60.281 61.111 0.00 0.00 0.00 3.07
3323 4050 1.896183 CACACACCGGCCACATCAA 60.896 57.895 0.00 0.00 0.00 2.57
3324 4051 1.074775 ACACACCGGCCACATCAAT 59.925 52.632 0.00 0.00 0.00 2.57
3325 4052 0.326595 ACACACCGGCCACATCAATA 59.673 50.000 0.00 0.00 0.00 1.90
3326 4053 1.064758 ACACACCGGCCACATCAATAT 60.065 47.619 0.00 0.00 0.00 1.28
3327 4054 1.603802 CACACCGGCCACATCAATATC 59.396 52.381 0.00 0.00 0.00 1.63
3328 4055 1.238439 CACCGGCCACATCAATATCC 58.762 55.000 0.00 0.00 0.00 2.59
3329 4056 1.140312 ACCGGCCACATCAATATCCT 58.860 50.000 0.00 0.00 0.00 3.24
3330 4057 1.072331 ACCGGCCACATCAATATCCTC 59.928 52.381 0.00 0.00 0.00 3.71
3331 4058 1.072173 CCGGCCACATCAATATCCTCA 59.928 52.381 2.24 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 80 4.705507 GGTAGATCCGATCTAGGTAATGCA 59.294 45.833 16.95 0.00 42.20 3.96
89 96 0.107165 GGGGCAAGTGGTGGTAGATC 60.107 60.000 0.00 0.00 0.00 2.75
143 163 3.069872 TGGTGTTCATGTGGTACGTACTT 59.930 43.478 24.07 5.57 0.00 2.24
146 166 2.288948 GGTGGTGTTCATGTGGTACGTA 60.289 50.000 0.00 0.00 0.00 3.57
148 168 1.153353 GGTGGTGTTCATGTGGTACG 58.847 55.000 0.00 0.00 0.00 3.67
176 196 2.094545 GGTGGTACGTGGTAGATTCGTT 60.095 50.000 0.00 0.00 38.69 3.85
202 236 2.166270 GCAGGCTGCAGTAGTTGAC 58.834 57.895 33.33 0.00 44.26 3.18
235 269 4.241681 GTCAGACTTCAGAGCAAAGTAGG 58.758 47.826 0.00 0.00 37.10 3.18
236 270 4.241681 GGTCAGACTTCAGAGCAAAGTAG 58.758 47.826 0.00 0.00 37.10 2.57
237 271 3.305403 CGGTCAGACTTCAGAGCAAAGTA 60.305 47.826 0.00 0.00 37.10 2.24
238 272 2.546795 CGGTCAGACTTCAGAGCAAAGT 60.547 50.000 0.00 0.00 39.61 2.66
239 273 2.064762 CGGTCAGACTTCAGAGCAAAG 58.935 52.381 0.00 0.00 31.44 2.77
240 274 1.412710 ACGGTCAGACTTCAGAGCAAA 59.587 47.619 0.00 0.00 31.44 3.68
693 754 2.279252 ATGCGACCGCGTGGATAC 60.279 61.111 24.59 10.43 45.51 2.24
694 755 2.027024 GATGCGACCGCGTGGATA 59.973 61.111 24.59 4.83 45.51 2.59
695 756 3.774959 GAGATGCGACCGCGTGGAT 62.775 63.158 24.59 3.92 45.51 3.41
886 966 1.805871 GCTGATAGTGCTGCTGAGACC 60.806 57.143 0.00 0.00 0.00 3.85
973 1053 3.488090 GAAGCGCGGTACCTGCAC 61.488 66.667 23.09 15.79 0.00 4.57
987 1067 1.288350 CTTCCATCTCAGCTGCGAAG 58.712 55.000 10.99 6.20 0.00 3.79
988 1068 0.742281 GCTTCCATCTCAGCTGCGAA 60.742 55.000 10.99 5.35 32.87 4.70
989 1069 1.153489 GCTTCCATCTCAGCTGCGA 60.153 57.895 9.18 9.18 32.87 5.10
990 1070 2.178890 GGCTTCCATCTCAGCTGCG 61.179 63.158 9.47 2.08 36.20 5.18
991 1071 0.465824 ATGGCTTCCATCTCAGCTGC 60.466 55.000 9.47 0.00 40.74 5.25
992 1072 1.309950 CATGGCTTCCATCTCAGCTG 58.690 55.000 7.63 7.63 43.15 4.24
993 1073 0.183014 CCATGGCTTCCATCTCAGCT 59.817 55.000 0.00 0.00 43.15 4.24
994 1074 1.453762 GCCATGGCTTCCATCTCAGC 61.454 60.000 29.98 0.00 43.15 4.26
995 1075 1.164662 CGCCATGGCTTCCATCTCAG 61.165 60.000 33.07 10.74 43.15 3.35
996 1076 1.153107 CGCCATGGCTTCCATCTCA 60.153 57.895 33.07 0.00 43.15 3.27
997 1077 1.153086 ACGCCATGGCTTCCATCTC 60.153 57.895 33.07 2.52 43.15 2.75
998 1078 1.153086 GACGCCATGGCTTCCATCT 60.153 57.895 33.07 7.41 43.15 2.90
999 1079 2.537560 CGACGCCATGGCTTCCATC 61.538 63.158 31.16 20.05 43.15 3.51
1764 1890 1.131638 ACTCCTGCTTGTTGTGGAGA 58.868 50.000 13.91 0.00 46.53 3.71
1941 2085 2.571757 GCCTCGTCGACCATGTCA 59.428 61.111 10.58 0.00 32.09 3.58
2018 2162 1.377202 TGGGGAGAATTGAGTGCGC 60.377 57.895 0.00 0.00 0.00 6.09
2124 2268 1.514443 CTTCTCCGCGTTCGTCCTC 60.514 63.158 4.92 0.00 0.00 3.71
2125 2269 2.567049 CTTCTCCGCGTTCGTCCT 59.433 61.111 4.92 0.00 0.00 3.85
2157 2301 3.997064 CTCCTTCACCAGCTCCGCG 62.997 68.421 0.00 0.00 0.00 6.46
2415 2562 0.730265 AGAACAAAAGAACACGCGCA 59.270 45.000 5.73 0.00 0.00 6.09
2437 2584 0.668535 CGTCAGTGTCTCACCAGTGA 59.331 55.000 0.00 0.00 41.34 3.41
2467 2615 8.011106 GCATAACCAAATCACATTTTCAAACAG 58.989 33.333 0.00 0.00 0.00 3.16
2517 2665 5.573219 TCTCACACATTCAATTCCTCCATT 58.427 37.500 0.00 0.00 0.00 3.16
2535 2683 0.322975 ACATGGTCACAGGCTCTCAC 59.677 55.000 0.00 0.00 0.00 3.51
2547 2695 4.675146 GCATACACAATGAACCACATGGTC 60.675 45.833 3.49 0.00 40.79 4.02
2574 2722 5.604420 CGATCAAGCAAAACGTTTTTGTACG 60.604 40.000 23.14 20.53 46.52 3.67
2579 2727 3.120041 CCCGATCAAGCAAAACGTTTTT 58.880 40.909 23.14 8.28 0.00 1.94
2645 2793 0.597637 GTCCTGGCATCGGTATGTCG 60.598 60.000 0.00 0.00 40.81 4.35
2649 2797 1.048601 ATTCGTCCTGGCATCGGTAT 58.951 50.000 0.00 0.00 0.00 2.73
2656 2804 4.424711 GGGGCATTCGTCCTGGCA 62.425 66.667 9.49 0.00 40.70 4.92
2686 2834 2.106074 CGCGGCATTGTAGGCTTGA 61.106 57.895 0.00 0.00 0.00 3.02
2687 2835 2.309764 GACGCGGCATTGTAGGCTTG 62.310 60.000 7.34 0.00 0.00 4.01
2688 2836 2.046314 ACGCGGCATTGTAGGCTT 60.046 55.556 12.47 0.00 0.00 4.35
2689 2837 2.511600 GACGCGGCATTGTAGGCT 60.512 61.111 7.34 0.00 0.00 4.58
2690 2838 2.395360 TTGACGCGGCATTGTAGGC 61.395 57.895 19.26 0.00 0.00 3.93
2691 2839 1.295357 TGTTGACGCGGCATTGTAGG 61.295 55.000 19.26 0.00 0.00 3.18
2692 2840 0.179225 GTGTTGACGCGGCATTGTAG 60.179 55.000 19.26 0.00 0.00 2.74
2693 2841 1.570347 GGTGTTGACGCGGCATTGTA 61.570 55.000 19.26 0.00 0.00 2.41
2760 3465 5.248477 TGGCTCTCTGGTTACTTAATCAGTT 59.752 40.000 8.74 0.00 43.26 3.16
2915 3642 4.871871 TCTACCTCCATTCAGAGAGTCT 57.128 45.455 0.00 0.00 35.82 3.24
2932 3659 3.942115 GGCCTTGGAGAACAAAGATCTAC 59.058 47.826 0.00 0.00 38.91 2.59
2933 3660 3.369471 CGGCCTTGGAGAACAAAGATCTA 60.369 47.826 0.00 0.00 38.91 1.98
2934 3661 2.616510 CGGCCTTGGAGAACAAAGATCT 60.617 50.000 0.00 0.00 38.91 2.75
2951 3678 4.601019 CAACATGAAAATGTATCTCGGCC 58.399 43.478 0.00 0.00 33.81 6.13
2955 3682 8.976986 AAAAGAGCAACATGAAAATGTATCTC 57.023 30.769 0.00 10.08 35.31 2.75
2984 3711 7.634522 CAAATATTTTGCCTCCGTTTCAAAAA 58.365 30.769 0.00 0.00 41.26 1.94
2985 3712 6.293135 GCAAATATTTTGCCTCCGTTTCAAAA 60.293 34.615 12.74 0.00 41.86 2.44
2986 3713 5.178438 GCAAATATTTTGCCTCCGTTTCAAA 59.822 36.000 12.74 0.00 39.38 2.69
2987 3714 4.688413 GCAAATATTTTGCCTCCGTTTCAA 59.312 37.500 12.74 0.00 39.38 2.69
2988 3715 4.241681 GCAAATATTTTGCCTCCGTTTCA 58.758 39.130 12.74 0.00 39.38 2.69
2989 3716 4.840401 GCAAATATTTTGCCTCCGTTTC 57.160 40.909 12.74 0.00 39.38 2.78
2998 3725 7.928908 TTAATCGATGAGGCAAATATTTTGC 57.071 32.000 14.88 14.88 44.22 3.68
3005 3732 9.342308 TCTTCTTAATTAATCGATGAGGCAAAT 57.658 29.630 0.00 0.00 0.00 2.32
3006 3733 8.731275 TCTTCTTAATTAATCGATGAGGCAAA 57.269 30.769 0.00 0.00 0.00 3.68
3007 3734 8.731275 TTCTTCTTAATTAATCGATGAGGCAA 57.269 30.769 0.00 0.00 0.00 4.52
3008 3735 8.204160 TCTTCTTCTTAATTAATCGATGAGGCA 58.796 33.333 0.00 0.00 0.00 4.75
3009 3736 8.594881 TCTTCTTCTTAATTAATCGATGAGGC 57.405 34.615 0.00 0.00 0.00 4.70
3010 3737 9.973450 TCTCTTCTTCTTAATTAATCGATGAGG 57.027 33.333 19.96 13.97 0.00 3.86
3016 3743 9.657121 GGCAATTCTCTTCTTCTTAATTAATCG 57.343 33.333 0.00 0.00 0.00 3.34
3017 3744 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
3018 3745 9.479549 TGGGCAATTCTCTTCTTCTTAATTAAT 57.520 29.630 0.00 0.00 0.00 1.40
3019 3746 8.877864 TGGGCAATTCTCTTCTTCTTAATTAA 57.122 30.769 0.00 0.00 0.00 1.40
3020 3747 8.109634 ACTGGGCAATTCTCTTCTTCTTAATTA 58.890 33.333 0.00 0.00 0.00 1.40
3021 3748 6.950619 ACTGGGCAATTCTCTTCTTCTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
3022 3749 6.488715 ACTGGGCAATTCTCTTCTTCTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
3023 3750 5.880901 ACTGGGCAATTCTCTTCTTCTTAA 58.119 37.500 0.00 0.00 0.00 1.85
3024 3751 5.505181 ACTGGGCAATTCTCTTCTTCTTA 57.495 39.130 0.00 0.00 0.00 2.10
3025 3752 4.379302 ACTGGGCAATTCTCTTCTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
3026 3753 4.379302 AACTGGGCAATTCTCTTCTTCT 57.621 40.909 0.00 0.00 0.00 2.85
3027 3754 6.765915 ATTAACTGGGCAATTCTCTTCTTC 57.234 37.500 0.00 0.00 0.00 2.87
3028 3755 7.544804 AAATTAACTGGGCAATTCTCTTCTT 57.455 32.000 0.00 0.00 0.00 2.52
3029 3756 7.544804 AAAATTAACTGGGCAATTCTCTTCT 57.455 32.000 0.00 0.00 0.00 2.85
3030 3757 6.528072 CGAAAATTAACTGGGCAATTCTCTTC 59.472 38.462 0.00 0.00 0.00 2.87
3031 3758 6.208599 TCGAAAATTAACTGGGCAATTCTCTT 59.791 34.615 0.00 0.00 0.00 2.85
3032 3759 5.710099 TCGAAAATTAACTGGGCAATTCTCT 59.290 36.000 0.00 0.00 0.00 3.10
3033 3760 5.949735 TCGAAAATTAACTGGGCAATTCTC 58.050 37.500 0.00 0.00 0.00 2.87
3034 3761 5.975693 TCGAAAATTAACTGGGCAATTCT 57.024 34.783 0.00 0.00 0.00 2.40
3035 3762 7.414814 TTTTCGAAAATTAACTGGGCAATTC 57.585 32.000 19.08 0.00 0.00 2.17
3036 3763 7.254966 GGTTTTTCGAAAATTAACTGGGCAATT 60.255 33.333 23.05 0.00 0.00 2.32
3037 3764 6.203915 GGTTTTTCGAAAATTAACTGGGCAAT 59.796 34.615 23.05 0.00 0.00 3.56
3038 3765 5.524281 GGTTTTTCGAAAATTAACTGGGCAA 59.476 36.000 23.05 1.86 0.00 4.52
3039 3766 5.051153 GGTTTTTCGAAAATTAACTGGGCA 58.949 37.500 23.05 2.37 0.00 5.36
3040 3767 4.149221 CGGTTTTTCGAAAATTAACTGGGC 59.851 41.667 23.05 6.12 0.00 5.36
3041 3768 5.521544 TCGGTTTTTCGAAAATTAACTGGG 58.478 37.500 23.05 11.97 36.12 4.45
3042 3769 5.116528 GCTCGGTTTTTCGAAAATTAACTGG 59.883 40.000 23.05 16.27 38.77 4.00
3043 3770 5.164320 CGCTCGGTTTTTCGAAAATTAACTG 60.164 40.000 23.05 21.14 38.77 3.16
3044 3771 4.907582 CGCTCGGTTTTTCGAAAATTAACT 59.092 37.500 23.05 0.00 38.77 2.24
3045 3772 4.905295 TCGCTCGGTTTTTCGAAAATTAAC 59.095 37.500 23.05 17.59 38.77 2.01
3046 3773 5.093169 TCGCTCGGTTTTTCGAAAATTAA 57.907 34.783 23.05 6.77 38.77 1.40
3047 3774 4.728917 TCGCTCGGTTTTTCGAAAATTA 57.271 36.364 23.05 7.52 38.77 1.40
3048 3775 3.612472 TCGCTCGGTTTTTCGAAAATT 57.388 38.095 23.05 0.00 38.77 1.82
3049 3776 3.612472 TTCGCTCGGTTTTTCGAAAAT 57.388 38.095 23.05 0.00 37.90 1.82
3050 3777 3.402058 TTTCGCTCGGTTTTTCGAAAA 57.598 38.095 19.08 19.08 44.52 2.29
3051 3778 3.100089 GTTTTCGCTCGGTTTTTCGAAA 58.900 40.909 6.47 6.47 45.38 3.46
3052 3779 2.539344 GGTTTTCGCTCGGTTTTTCGAA 60.539 45.455 0.00 0.00 38.77 3.71
3053 3780 1.003652 GGTTTTCGCTCGGTTTTTCGA 60.004 47.619 0.00 0.00 37.60 3.71
3054 3781 1.391787 GGTTTTCGCTCGGTTTTTCG 58.608 50.000 0.00 0.00 0.00 3.46
3055 3782 1.003652 TCGGTTTTCGCTCGGTTTTTC 60.004 47.619 0.00 0.00 39.05 2.29
3056 3783 1.015868 TCGGTTTTCGCTCGGTTTTT 58.984 45.000 0.00 0.00 39.05 1.94
3057 3784 1.232119 ATCGGTTTTCGCTCGGTTTT 58.768 45.000 0.00 0.00 39.05 2.43
3058 3785 1.728425 GTATCGGTTTTCGCTCGGTTT 59.272 47.619 0.00 0.00 39.05 3.27
3059 3786 1.337074 TGTATCGGTTTTCGCTCGGTT 60.337 47.619 0.00 0.00 39.05 4.44
3060 3787 0.244450 TGTATCGGTTTTCGCTCGGT 59.756 50.000 0.00 0.00 39.05 4.69
3061 3788 1.352114 TTGTATCGGTTTTCGCTCGG 58.648 50.000 0.00 0.00 39.05 4.63
3062 3789 2.156117 TGTTTGTATCGGTTTTCGCTCG 59.844 45.455 0.00 0.00 39.05 5.03
3063 3790 3.799137 TGTTTGTATCGGTTTTCGCTC 57.201 42.857 0.00 0.00 39.05 5.03
3064 3791 3.304190 GGTTGTTTGTATCGGTTTTCGCT 60.304 43.478 0.00 0.00 39.05 4.93
3065 3792 2.975193 GGTTGTTTGTATCGGTTTTCGC 59.025 45.455 0.00 0.00 39.05 4.70
3066 3793 3.557508 GGGTTGTTTGTATCGGTTTTCG 58.442 45.455 0.00 0.00 40.90 3.46
3067 3794 3.250521 TCGGGTTGTTTGTATCGGTTTTC 59.749 43.478 0.00 0.00 0.00 2.29
3068 3795 3.212685 TCGGGTTGTTTGTATCGGTTTT 58.787 40.909 0.00 0.00 0.00 2.43
3069 3796 2.848691 TCGGGTTGTTTGTATCGGTTT 58.151 42.857 0.00 0.00 0.00 3.27
3070 3797 2.547299 TCGGGTTGTTTGTATCGGTT 57.453 45.000 0.00 0.00 0.00 4.44
3071 3798 2.547299 TTCGGGTTGTTTGTATCGGT 57.453 45.000 0.00 0.00 0.00 4.69
3072 3799 2.548904 TGTTTCGGGTTGTTTGTATCGG 59.451 45.455 0.00 0.00 0.00 4.18
3073 3800 3.364565 CCTGTTTCGGGTTGTTTGTATCG 60.365 47.826 0.00 0.00 0.00 2.92
3074 3801 3.610821 GCCTGTTTCGGGTTGTTTGTATC 60.611 47.826 0.00 0.00 31.34 2.24
3075 3802 2.295070 GCCTGTTTCGGGTTGTTTGTAT 59.705 45.455 0.00 0.00 31.34 2.29
3076 3803 1.677052 GCCTGTTTCGGGTTGTTTGTA 59.323 47.619 0.00 0.00 31.34 2.41
3077 3804 0.458260 GCCTGTTTCGGGTTGTTTGT 59.542 50.000 0.00 0.00 31.34 2.83
3078 3805 0.744281 AGCCTGTTTCGGGTTGTTTG 59.256 50.000 0.00 0.00 31.34 2.93
3079 3806 1.951602 GTAGCCTGTTTCGGGTTGTTT 59.048 47.619 0.00 0.00 36.04 2.83
3080 3807 1.142262 AGTAGCCTGTTTCGGGTTGTT 59.858 47.619 0.00 0.00 36.04 2.83
3081 3808 0.763035 AGTAGCCTGTTTCGGGTTGT 59.237 50.000 0.00 0.00 36.04 3.32
3082 3809 1.439679 GAGTAGCCTGTTTCGGGTTG 58.560 55.000 0.00 0.00 36.04 3.77
3083 3810 0.037605 CGAGTAGCCTGTTTCGGGTT 60.038 55.000 0.00 0.00 36.04 4.11
3084 3811 1.590147 CGAGTAGCCTGTTTCGGGT 59.410 57.895 0.00 0.00 38.53 5.28
3085 3812 1.153628 CCGAGTAGCCTGTTTCGGG 60.154 63.158 3.97 0.00 46.58 5.14
3086 3813 4.496670 CCGAGTAGCCTGTTTCGG 57.503 61.111 0.00 0.00 45.45 4.30
3087 3814 0.245539 TTCCCGAGTAGCCTGTTTCG 59.754 55.000 0.00 0.00 0.00 3.46
3088 3815 2.007547 GCTTCCCGAGTAGCCTGTTTC 61.008 57.143 0.00 0.00 30.59 2.78
3089 3816 0.036294 GCTTCCCGAGTAGCCTGTTT 60.036 55.000 0.00 0.00 30.59 2.83
3090 3817 1.192146 TGCTTCCCGAGTAGCCTGTT 61.192 55.000 0.00 0.00 35.65 3.16
3091 3818 1.609501 TGCTTCCCGAGTAGCCTGT 60.610 57.895 0.00 0.00 35.65 4.00
3092 3819 1.153549 GTGCTTCCCGAGTAGCCTG 60.154 63.158 0.00 0.00 35.65 4.85
3093 3820 2.711922 CGTGCTTCCCGAGTAGCCT 61.712 63.158 0.00 0.00 35.65 4.58
3094 3821 2.202756 CGTGCTTCCCGAGTAGCC 60.203 66.667 0.00 0.00 35.65 3.93
3095 3822 0.389426 TTTCGTGCTTCCCGAGTAGC 60.389 55.000 0.00 0.00 36.96 3.58
3096 3823 1.336517 TGTTTCGTGCTTCCCGAGTAG 60.337 52.381 0.00 0.00 35.49 2.57
3097 3824 0.675083 TGTTTCGTGCTTCCCGAGTA 59.325 50.000 0.00 0.00 35.49 2.59
3098 3825 0.878961 GTGTTTCGTGCTTCCCGAGT 60.879 55.000 0.00 0.00 35.49 4.18
3099 3826 1.566018 GGTGTTTCGTGCTTCCCGAG 61.566 60.000 0.00 0.00 35.49 4.63
3100 3827 1.595929 GGTGTTTCGTGCTTCCCGA 60.596 57.895 0.00 0.00 0.00 5.14
3101 3828 2.943653 GGTGTTTCGTGCTTCCCG 59.056 61.111 0.00 0.00 0.00 5.14
3102 3829 1.890510 ACGGTGTTTCGTGCTTCCC 60.891 57.895 0.00 0.00 42.21 3.97
3103 3830 3.727146 ACGGTGTTTCGTGCTTCC 58.273 55.556 0.00 0.00 42.21 3.46
3109 3836 1.085501 GTGTGGTCACGGTGTTTCGT 61.086 55.000 8.17 0.00 44.91 3.85
3110 3837 1.084935 TGTGTGGTCACGGTGTTTCG 61.085 55.000 8.17 0.00 46.49 3.46
3111 3838 0.655733 CTGTGTGGTCACGGTGTTTC 59.344 55.000 8.17 0.65 46.49 2.78
3112 3839 2.775351 CTGTGTGGTCACGGTGTTT 58.225 52.632 8.17 0.00 46.49 2.83
3113 3840 4.532490 CTGTGTGGTCACGGTGTT 57.468 55.556 8.17 0.00 46.49 3.32
3118 3845 1.157870 GGGTTGTCTGTGTGGTCACG 61.158 60.000 0.00 0.00 46.49 4.35
3119 3846 1.157870 CGGGTTGTCTGTGTGGTCAC 61.158 60.000 0.00 0.00 44.08 3.67
3120 3847 1.145156 CGGGTTGTCTGTGTGGTCA 59.855 57.895 0.00 0.00 0.00 4.02
3121 3848 0.878961 GACGGGTTGTCTGTGTGGTC 60.879 60.000 0.00 0.00 44.58 4.02
3122 3849 1.145377 GACGGGTTGTCTGTGTGGT 59.855 57.895 0.00 0.00 44.58 4.16
3123 3850 4.043168 GACGGGTTGTCTGTGTGG 57.957 61.111 0.00 0.00 44.58 4.17
3131 3858 1.302511 GGAGCATGTGACGGGTTGT 60.303 57.895 0.00 0.00 0.00 3.32
3132 3859 0.249120 TAGGAGCATGTGACGGGTTG 59.751 55.000 0.00 0.00 0.00 3.77
3133 3860 0.981183 TTAGGAGCATGTGACGGGTT 59.019 50.000 0.00 0.00 0.00 4.11
3134 3861 0.249398 GTTAGGAGCATGTGACGGGT 59.751 55.000 0.00 0.00 0.00 5.28
3135 3862 0.249120 TGTTAGGAGCATGTGACGGG 59.751 55.000 0.00 0.00 0.00 5.28
3136 3863 1.337728 TGTGTTAGGAGCATGTGACGG 60.338 52.381 0.00 0.00 0.00 4.79
3137 3864 1.726791 GTGTGTTAGGAGCATGTGACG 59.273 52.381 0.00 0.00 0.00 4.35
3138 3865 2.766313 TGTGTGTTAGGAGCATGTGAC 58.234 47.619 0.00 0.00 0.00 3.67
3139 3866 3.138304 GTTGTGTGTTAGGAGCATGTGA 58.862 45.455 0.00 0.00 0.00 3.58
3140 3867 2.877786 TGTTGTGTGTTAGGAGCATGTG 59.122 45.455 0.00 0.00 0.00 3.21
3141 3868 3.207265 TGTTGTGTGTTAGGAGCATGT 57.793 42.857 0.00 0.00 0.00 3.21
3142 3869 4.216042 TGATTGTTGTGTGTTAGGAGCATG 59.784 41.667 0.00 0.00 0.00 4.06
3143 3870 4.397420 TGATTGTTGTGTGTTAGGAGCAT 58.603 39.130 0.00 0.00 0.00 3.79
3144 3871 3.814625 TGATTGTTGTGTGTTAGGAGCA 58.185 40.909 0.00 0.00 0.00 4.26
3145 3872 5.163754 GGTATGATTGTTGTGTGTTAGGAGC 60.164 44.000 0.00 0.00 0.00 4.70
3146 3873 6.173339 AGGTATGATTGTTGTGTGTTAGGAG 58.827 40.000 0.00 0.00 0.00 3.69
3147 3874 6.121776 AGGTATGATTGTTGTGTGTTAGGA 57.878 37.500 0.00 0.00 0.00 2.94
3148 3875 5.937540 TGAGGTATGATTGTTGTGTGTTAGG 59.062 40.000 0.00 0.00 0.00 2.69
3149 3876 6.128282 GGTGAGGTATGATTGTTGTGTGTTAG 60.128 42.308 0.00 0.00 0.00 2.34
3150 3877 5.703592 GGTGAGGTATGATTGTTGTGTGTTA 59.296 40.000 0.00 0.00 0.00 2.41
3151 3878 4.518970 GGTGAGGTATGATTGTTGTGTGTT 59.481 41.667 0.00 0.00 0.00 3.32
3152 3879 4.072131 GGTGAGGTATGATTGTTGTGTGT 58.928 43.478 0.00 0.00 0.00 3.72
3153 3880 4.071423 TGGTGAGGTATGATTGTTGTGTG 58.929 43.478 0.00 0.00 0.00 3.82
3154 3881 4.072131 GTGGTGAGGTATGATTGTTGTGT 58.928 43.478 0.00 0.00 0.00 3.72
3155 3882 4.071423 TGTGGTGAGGTATGATTGTTGTG 58.929 43.478 0.00 0.00 0.00 3.33
3156 3883 4.072131 GTGTGGTGAGGTATGATTGTTGT 58.928 43.478 0.00 0.00 0.00 3.32
3157 3884 4.326826 AGTGTGGTGAGGTATGATTGTTG 58.673 43.478 0.00 0.00 0.00 3.33
3158 3885 4.640771 AGTGTGGTGAGGTATGATTGTT 57.359 40.909 0.00 0.00 0.00 2.83
3159 3886 4.326826 CAAGTGTGGTGAGGTATGATTGT 58.673 43.478 0.00 0.00 0.00 2.71
3160 3887 3.127548 GCAAGTGTGGTGAGGTATGATTG 59.872 47.826 0.00 0.00 0.00 2.67
3161 3888 3.244875 TGCAAGTGTGGTGAGGTATGATT 60.245 43.478 0.00 0.00 0.00 2.57
3162 3889 2.305635 TGCAAGTGTGGTGAGGTATGAT 59.694 45.455 0.00 0.00 0.00 2.45
3163 3890 1.696884 TGCAAGTGTGGTGAGGTATGA 59.303 47.619 0.00 0.00 0.00 2.15
3164 3891 1.806542 GTGCAAGTGTGGTGAGGTATG 59.193 52.381 0.00 0.00 0.00 2.39
3165 3892 1.419762 TGTGCAAGTGTGGTGAGGTAT 59.580 47.619 0.00 0.00 0.00 2.73
3166 3893 0.833949 TGTGCAAGTGTGGTGAGGTA 59.166 50.000 0.00 0.00 0.00 3.08
3167 3894 0.034574 TTGTGCAAGTGTGGTGAGGT 60.035 50.000 0.00 0.00 0.00 3.85
3168 3895 0.381801 GTTGTGCAAGTGTGGTGAGG 59.618 55.000 0.00 0.00 0.00 3.86
3169 3896 1.331756 GAGTTGTGCAAGTGTGGTGAG 59.668 52.381 0.00 0.00 0.00 3.51
3170 3897 1.339535 TGAGTTGTGCAAGTGTGGTGA 60.340 47.619 0.00 0.00 0.00 4.02
3171 3898 1.093972 TGAGTTGTGCAAGTGTGGTG 58.906 50.000 0.00 0.00 0.00 4.17
3172 3899 1.472480 GTTGAGTTGTGCAAGTGTGGT 59.528 47.619 0.00 0.00 0.00 4.16
3173 3900 1.472082 TGTTGAGTTGTGCAAGTGTGG 59.528 47.619 0.00 0.00 0.00 4.17
3174 3901 2.419673 TCTGTTGAGTTGTGCAAGTGTG 59.580 45.455 0.00 0.00 0.00 3.82
3175 3902 2.710377 TCTGTTGAGTTGTGCAAGTGT 58.290 42.857 0.00 0.00 0.00 3.55
3176 3903 3.429085 GTTCTGTTGAGTTGTGCAAGTG 58.571 45.455 0.00 0.00 0.00 3.16
3177 3904 2.423538 GGTTCTGTTGAGTTGTGCAAGT 59.576 45.455 0.00 0.00 0.00 3.16
3178 3905 2.223572 GGGTTCTGTTGAGTTGTGCAAG 60.224 50.000 0.00 0.00 0.00 4.01
3179 3906 1.748493 GGGTTCTGTTGAGTTGTGCAA 59.252 47.619 0.00 0.00 0.00 4.08
3180 3907 1.064758 AGGGTTCTGTTGAGTTGTGCA 60.065 47.619 0.00 0.00 0.00 4.57
3181 3908 1.334869 CAGGGTTCTGTTGAGTTGTGC 59.665 52.381 0.00 0.00 36.30 4.57
3182 3909 2.614057 GTCAGGGTTCTGTTGAGTTGTG 59.386 50.000 0.00 0.00 41.59 3.33
3183 3910 2.238646 TGTCAGGGTTCTGTTGAGTTGT 59.761 45.455 0.00 0.00 41.59 3.32
3184 3911 2.917933 TGTCAGGGTTCTGTTGAGTTG 58.082 47.619 0.00 0.00 41.59 3.16
3185 3912 3.199946 TCTTGTCAGGGTTCTGTTGAGTT 59.800 43.478 0.00 0.00 41.59 3.01
3186 3913 2.771943 TCTTGTCAGGGTTCTGTTGAGT 59.228 45.455 0.00 0.00 41.59 3.41
3187 3914 3.475566 TCTTGTCAGGGTTCTGTTGAG 57.524 47.619 0.00 0.00 41.59 3.02
3188 3915 3.390967 TGATCTTGTCAGGGTTCTGTTGA 59.609 43.478 0.00 0.00 41.59 3.18
3189 3916 3.499918 GTGATCTTGTCAGGGTTCTGTTG 59.500 47.826 0.00 0.00 41.59 3.33
3190 3917 3.496870 GGTGATCTTGTCAGGGTTCTGTT 60.497 47.826 0.00 0.00 41.59 3.16
3191 3918 2.039084 GGTGATCTTGTCAGGGTTCTGT 59.961 50.000 0.00 0.00 41.59 3.41
3192 3919 2.038952 TGGTGATCTTGTCAGGGTTCTG 59.961 50.000 0.00 0.00 42.21 3.02
3193 3920 2.338809 TGGTGATCTTGTCAGGGTTCT 58.661 47.619 0.00 0.00 37.56 3.01
3194 3921 2.814336 GTTGGTGATCTTGTCAGGGTTC 59.186 50.000 0.00 0.00 37.56 3.62
3195 3922 2.174639 TGTTGGTGATCTTGTCAGGGTT 59.825 45.455 0.00 0.00 37.56 4.11
3196 3923 1.774254 TGTTGGTGATCTTGTCAGGGT 59.226 47.619 0.00 0.00 37.56 4.34
3197 3924 2.554032 GTTGTTGGTGATCTTGTCAGGG 59.446 50.000 0.00 0.00 37.56 4.45
3198 3925 2.224079 CGTTGTTGGTGATCTTGTCAGG 59.776 50.000 0.00 0.00 37.56 3.86
3199 3926 3.130633 TCGTTGTTGGTGATCTTGTCAG 58.869 45.455 0.00 0.00 37.56 3.51
3200 3927 3.186702 TCGTTGTTGGTGATCTTGTCA 57.813 42.857 0.00 0.00 0.00 3.58
3201 3928 3.745975 TCATCGTTGTTGGTGATCTTGTC 59.254 43.478 0.00 0.00 0.00 3.18
3202 3929 3.498397 GTCATCGTTGTTGGTGATCTTGT 59.502 43.478 0.00 0.00 0.00 3.16
3203 3930 3.748048 AGTCATCGTTGTTGGTGATCTTG 59.252 43.478 0.00 0.00 0.00 3.02
3204 3931 3.997021 GAGTCATCGTTGTTGGTGATCTT 59.003 43.478 0.00 0.00 0.00 2.40
3205 3932 3.589988 GAGTCATCGTTGTTGGTGATCT 58.410 45.455 0.00 0.00 0.00 2.75
3206 3933 2.345641 CGAGTCATCGTTGTTGGTGATC 59.654 50.000 0.00 0.00 44.09 2.92
3207 3934 2.337583 CGAGTCATCGTTGTTGGTGAT 58.662 47.619 0.00 0.00 44.09 3.06
3208 3935 1.778334 CGAGTCATCGTTGTTGGTGA 58.222 50.000 0.00 0.00 44.09 4.02
3219 3946 3.002791 TGCTTTGATTGTCCGAGTCATC 58.997 45.455 0.00 0.00 0.00 2.92
3220 3947 3.057969 TGCTTTGATTGTCCGAGTCAT 57.942 42.857 0.00 0.00 0.00 3.06
3221 3948 2.542020 TGCTTTGATTGTCCGAGTCA 57.458 45.000 0.00 0.00 0.00 3.41
3222 3949 2.548057 TGTTGCTTTGATTGTCCGAGTC 59.452 45.455 0.00 0.00 0.00 3.36
3223 3950 2.571212 TGTTGCTTTGATTGTCCGAGT 58.429 42.857 0.00 0.00 0.00 4.18
3224 3951 3.725895 CGATGTTGCTTTGATTGTCCGAG 60.726 47.826 0.00 0.00 0.00 4.63
3225 3952 2.159430 CGATGTTGCTTTGATTGTCCGA 59.841 45.455 0.00 0.00 0.00 4.55
3226 3953 2.159430 TCGATGTTGCTTTGATTGTCCG 59.841 45.455 0.00 0.00 0.00 4.79
3227 3954 3.058293 TGTCGATGTTGCTTTGATTGTCC 60.058 43.478 0.00 0.00 0.00 4.02
3228 3955 4.145876 TGTCGATGTTGCTTTGATTGTC 57.854 40.909 0.00 0.00 0.00 3.18
3229 3956 4.202000 TGTTGTCGATGTTGCTTTGATTGT 60.202 37.500 0.00 0.00 0.00 2.71
3230 3957 4.146961 GTGTTGTCGATGTTGCTTTGATTG 59.853 41.667 0.00 0.00 0.00 2.67
3231 3958 4.202000 TGTGTTGTCGATGTTGCTTTGATT 60.202 37.500 0.00 0.00 0.00 2.57
3232 3959 3.314913 TGTGTTGTCGATGTTGCTTTGAT 59.685 39.130 0.00 0.00 0.00 2.57
3233 3960 2.680339 TGTGTTGTCGATGTTGCTTTGA 59.320 40.909 0.00 0.00 0.00 2.69
3234 3961 3.063670 TGTGTTGTCGATGTTGCTTTG 57.936 42.857 0.00 0.00 0.00 2.77
3235 3962 3.376859 TCTTGTGTTGTCGATGTTGCTTT 59.623 39.130 0.00 0.00 0.00 3.51
3236 3963 2.942376 TCTTGTGTTGTCGATGTTGCTT 59.058 40.909 0.00 0.00 0.00 3.91
3237 3964 2.560504 TCTTGTGTTGTCGATGTTGCT 58.439 42.857 0.00 0.00 0.00 3.91
3238 3965 3.332761 TTCTTGTGTTGTCGATGTTGC 57.667 42.857 0.00 0.00 0.00 4.17
3239 3966 4.908736 AGTTTCTTGTGTTGTCGATGTTG 58.091 39.130 0.00 0.00 0.00 3.33
3240 3967 6.671614 TTAGTTTCTTGTGTTGTCGATGTT 57.328 33.333 0.00 0.00 0.00 2.71
3241 3968 5.277345 GCTTAGTTTCTTGTGTTGTCGATGT 60.277 40.000 0.00 0.00 0.00 3.06
3242 3969 5.140177 GCTTAGTTTCTTGTGTTGTCGATG 58.860 41.667 0.00 0.00 0.00 3.84
3243 3970 4.814234 TGCTTAGTTTCTTGTGTTGTCGAT 59.186 37.500 0.00 0.00 0.00 3.59
3244 3971 4.185394 TGCTTAGTTTCTTGTGTTGTCGA 58.815 39.130 0.00 0.00 0.00 4.20
3245 3972 4.530094 TGCTTAGTTTCTTGTGTTGTCG 57.470 40.909 0.00 0.00 0.00 4.35
3246 3973 6.060028 TGATGCTTAGTTTCTTGTGTTGTC 57.940 37.500 0.00 0.00 0.00 3.18
3247 3974 6.294176 GGATGATGCTTAGTTTCTTGTGTTGT 60.294 38.462 0.00 0.00 0.00 3.32
3248 3975 6.088824 GGATGATGCTTAGTTTCTTGTGTTG 58.911 40.000 0.00 0.00 0.00 3.33
3249 3976 5.769662 TGGATGATGCTTAGTTTCTTGTGTT 59.230 36.000 0.00 0.00 0.00 3.32
3250 3977 5.316167 TGGATGATGCTTAGTTTCTTGTGT 58.684 37.500 0.00 0.00 0.00 3.72
3251 3978 5.885230 TGGATGATGCTTAGTTTCTTGTG 57.115 39.130 0.00 0.00 0.00 3.33
3252 3979 6.182627 TGATGGATGATGCTTAGTTTCTTGT 58.817 36.000 0.00 0.00 0.00 3.16
3253 3980 6.688637 TGATGGATGATGCTTAGTTTCTTG 57.311 37.500 0.00 0.00 0.00 3.02
3254 3981 7.114754 TCTTGATGGATGATGCTTAGTTTCTT 58.885 34.615 0.00 0.00 0.00 2.52
3255 3982 6.656902 TCTTGATGGATGATGCTTAGTTTCT 58.343 36.000 0.00 0.00 0.00 2.52
3256 3983 6.932356 TCTTGATGGATGATGCTTAGTTTC 57.068 37.500 0.00 0.00 0.00 2.78
3257 3984 7.363268 GGTTTCTTGATGGATGATGCTTAGTTT 60.363 37.037 0.00 0.00 0.00 2.66
3258 3985 6.096001 GGTTTCTTGATGGATGATGCTTAGTT 59.904 38.462 0.00 0.00 0.00 2.24
3259 3986 5.591877 GGTTTCTTGATGGATGATGCTTAGT 59.408 40.000 0.00 0.00 0.00 2.24
3260 3987 5.277683 CGGTTTCTTGATGGATGATGCTTAG 60.278 44.000 0.00 0.00 0.00 2.18
3261 3988 4.576053 CGGTTTCTTGATGGATGATGCTTA 59.424 41.667 0.00 0.00 0.00 3.09
3262 3989 3.379372 CGGTTTCTTGATGGATGATGCTT 59.621 43.478 0.00 0.00 0.00 3.91
3263 3990 2.947652 CGGTTTCTTGATGGATGATGCT 59.052 45.455 0.00 0.00 0.00 3.79
3264 3991 2.542411 GCGGTTTCTTGATGGATGATGC 60.542 50.000 0.00 0.00 0.00 3.91
3265 3992 2.684374 TGCGGTTTCTTGATGGATGATG 59.316 45.455 0.00 0.00 0.00 3.07
3266 3993 2.947652 CTGCGGTTTCTTGATGGATGAT 59.052 45.455 0.00 0.00 0.00 2.45
3267 3994 2.027285 TCTGCGGTTTCTTGATGGATGA 60.027 45.455 0.00 0.00 0.00 2.92
3268 3995 2.096496 GTCTGCGGTTTCTTGATGGATG 59.904 50.000 0.00 0.00 0.00 3.51
3269 3996 2.359900 GTCTGCGGTTTCTTGATGGAT 58.640 47.619 0.00 0.00 0.00 3.41
3270 3997 1.808411 GTCTGCGGTTTCTTGATGGA 58.192 50.000 0.00 0.00 0.00 3.41
3271 3998 0.443869 CGTCTGCGGTTTCTTGATGG 59.556 55.000 0.00 0.00 0.00 3.51
3272 3999 0.179215 GCGTCTGCGGTTTCTTGATG 60.179 55.000 0.00 0.00 38.78 3.07
3273 4000 2.162716 GCGTCTGCGGTTTCTTGAT 58.837 52.632 0.00 0.00 38.78 2.57
3274 4001 3.637714 GCGTCTGCGGTTTCTTGA 58.362 55.556 0.00 0.00 38.78 3.02
3284 4011 0.378610 GCTAATGGGAAAGCGTCTGC 59.621 55.000 0.00 0.00 43.24 4.26
3290 4017 0.179163 GTGTGCGCTAATGGGAAAGC 60.179 55.000 9.73 0.00 35.33 3.51
3291 4018 1.135689 GTGTGTGCGCTAATGGGAAAG 60.136 52.381 9.73 0.00 0.00 2.62
3292 4019 0.878416 GTGTGTGCGCTAATGGGAAA 59.122 50.000 9.73 0.00 0.00 3.13
3293 4020 0.958382 GGTGTGTGCGCTAATGGGAA 60.958 55.000 9.73 0.00 0.00 3.97
3294 4021 1.376683 GGTGTGTGCGCTAATGGGA 60.377 57.895 9.73 0.00 0.00 4.37
3295 4022 2.749865 CGGTGTGTGCGCTAATGGG 61.750 63.158 9.73 0.00 0.00 4.00
3296 4023 2.749865 CCGGTGTGTGCGCTAATGG 61.750 63.158 9.73 0.00 0.00 3.16
3297 4024 2.784596 CCGGTGTGTGCGCTAATG 59.215 61.111 9.73 0.00 0.00 1.90
3298 4025 3.124921 GCCGGTGTGTGCGCTAAT 61.125 61.111 9.73 0.00 0.00 1.73
3304 4031 3.737172 GATGTGGCCGGTGTGTGC 61.737 66.667 1.90 0.00 0.00 4.57
3305 4032 1.243342 ATTGATGTGGCCGGTGTGTG 61.243 55.000 1.90 0.00 0.00 3.82
3306 4033 0.326595 TATTGATGTGGCCGGTGTGT 59.673 50.000 1.90 0.00 0.00 3.72
3307 4034 1.603802 GATATTGATGTGGCCGGTGTG 59.396 52.381 1.90 0.00 0.00 3.82
3308 4035 1.476833 GGATATTGATGTGGCCGGTGT 60.477 52.381 1.90 0.00 0.00 4.16
3309 4036 1.202806 AGGATATTGATGTGGCCGGTG 60.203 52.381 1.90 0.00 0.00 4.94
3310 4037 1.072331 GAGGATATTGATGTGGCCGGT 59.928 52.381 1.90 0.00 0.00 5.28
3311 4038 1.072173 TGAGGATATTGATGTGGCCGG 59.928 52.381 0.00 0.00 0.00 6.13
3312 4039 2.549064 TGAGGATATTGATGTGGCCG 57.451 50.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.