Multiple sequence alignment - TraesCS5D01G385400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G385400 chr5D 100.000 4337 0 0 1 4337 454733297 454728961 0.000000e+00 8010
1 TraesCS5D01G385400 chr5D 85.027 187 25 3 3847 4032 455829858 455830042 2.060000e-43 187
2 TraesCS5D01G385400 chr5B 96.984 2719 67 3 822 3537 556296142 556293436 0.000000e+00 4553
3 TraesCS5D01G385400 chr5B 88.319 351 27 6 3698 4035 556293437 556293088 4.040000e-110 409
4 TraesCS5D01G385400 chr5B 85.535 159 20 3 3847 4002 557904586 557904744 3.470000e-36 163
5 TraesCS5D01G385400 chr5A 95.922 2722 96 7 822 3537 573676273 573673561 0.000000e+00 4397
6 TraesCS5D01G385400 chr5A 94.086 744 43 1 1 744 697194524 697193782 0.000000e+00 1129
7 TraesCS5D01G385400 chr5A 93.952 744 44 1 1 744 697061397 697060655 0.000000e+00 1123
8 TraesCS5D01G385400 chr5A 93.817 744 45 1 1 744 697275557 697274815 0.000000e+00 1118
9 TraesCS5D01G385400 chr5A 90.086 232 19 4 4110 4337 573672907 573672676 9.120000e-77 298
10 TraesCS5D01G385400 chr5A 88.444 225 17 5 3812 4035 573673197 573672981 3.330000e-66 263
11 TraesCS5D01G385400 chr7A 95.968 744 29 1 1 744 624775515 624776257 0.000000e+00 1206
12 TraesCS5D01G385400 chr7A 93.414 744 48 1 1 744 126479424 126478682 0.000000e+00 1101
13 TraesCS5D01G385400 chr1D 90.457 744 70 1 1 744 444134372 444133630 0.000000e+00 979
14 TraesCS5D01G385400 chr1D 90.188 744 72 1 1 744 443959562 443958820 0.000000e+00 968
15 TraesCS5D01G385400 chr2B 90.054 744 73 1 1 744 751652885 751652143 0.000000e+00 963
16 TraesCS5D01G385400 chr2B 81.538 195 33 3 3840 4032 800457974 800457781 1.610000e-34 158
17 TraesCS5D01G385400 chrUn 88.187 728 82 4 16 742 112379405 112378681 0.000000e+00 865
18 TraesCS5D01G385400 chrUn 99.405 168 1 0 3534 3701 131947808 131947975 5.450000e-79 305
19 TraesCS5D01G385400 chr4D 99.408 169 1 0 3535 3703 113186983 113187151 1.520000e-79 307
20 TraesCS5D01G385400 chr2D 98.286 175 1 2 3527 3699 75834213 75834387 5.450000e-79 305
21 TraesCS5D01G385400 chr2D 97.159 176 5 0 3529 3704 252715225 252715050 9.120000e-77 298
22 TraesCS5D01G385400 chr3D 98.824 170 2 0 3536 3705 336588162 336587993 1.960000e-78 303
23 TraesCS5D01G385400 chr3D 98.266 173 1 2 3529 3699 329442135 329441963 7.050000e-78 302
24 TraesCS5D01G385400 chr3D 99.398 166 1 0 3534 3699 402850798 402850633 7.050000e-78 302
25 TraesCS5D01G385400 chr3D 96.629 178 5 1 3536 3713 250048218 250048042 1.180000e-75 294
26 TraesCS5D01G385400 chr7D 97.175 177 4 1 3525 3700 574068677 574068853 9.120000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G385400 chr5D 454728961 454733297 4336 True 8010.000000 8010 100.0000 1 4337 1 chr5D.!!$R1 4336
1 TraesCS5D01G385400 chr5B 556293088 556296142 3054 True 2481.000000 4553 92.6515 822 4035 2 chr5B.!!$R1 3213
2 TraesCS5D01G385400 chr5A 573672676 573676273 3597 True 1652.666667 4397 91.4840 822 4337 3 chr5A.!!$R4 3515
3 TraesCS5D01G385400 chr5A 697193782 697194524 742 True 1129.000000 1129 94.0860 1 744 1 chr5A.!!$R2 743
4 TraesCS5D01G385400 chr5A 697060655 697061397 742 True 1123.000000 1123 93.9520 1 744 1 chr5A.!!$R1 743
5 TraesCS5D01G385400 chr5A 697274815 697275557 742 True 1118.000000 1118 93.8170 1 744 1 chr5A.!!$R3 743
6 TraesCS5D01G385400 chr7A 624775515 624776257 742 False 1206.000000 1206 95.9680 1 744 1 chr7A.!!$F1 743
7 TraesCS5D01G385400 chr7A 126478682 126479424 742 True 1101.000000 1101 93.4140 1 744 1 chr7A.!!$R1 743
8 TraesCS5D01G385400 chr1D 444133630 444134372 742 True 979.000000 979 90.4570 1 744 1 chr1D.!!$R2 743
9 TraesCS5D01G385400 chr1D 443958820 443959562 742 True 968.000000 968 90.1880 1 744 1 chr1D.!!$R1 743
10 TraesCS5D01G385400 chr2B 751652143 751652885 742 True 963.000000 963 90.0540 1 744 1 chr2B.!!$R1 743
11 TraesCS5D01G385400 chrUn 112378681 112379405 724 True 865.000000 865 88.1870 16 742 1 chrUn.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 704 0.105760 TTCCCTTGGCAGCCTGAAAA 60.106 50.000 14.15 0.0 0.00 2.29 F
962 964 0.240145 GGAAAACCTAACACAGCCGC 59.760 55.000 0.00 0.0 0.00 6.53 F
1581 1586 1.153823 CTACCAGAAGCCGACACCG 60.154 63.158 0.00 0.0 0.00 4.94 F
2541 2546 0.769873 CTGGCAGGGAAGGATATGCT 59.230 55.000 6.61 0.0 38.71 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1538 0.742281 CACAGGCTCGAATGAGTGGG 60.742 60.000 0.00 0.0 44.48 4.61 R
2352 2357 1.986575 CTAAAGCCTCAAGCCGCTGC 61.987 60.000 0.00 0.0 45.47 5.25 R
2967 2972 1.875963 CGCCTCCAATTTTCTGCGT 59.124 52.632 0.00 0.0 37.44 5.24 R
4114 4374 0.104934 ACACTGAACAGGGAGAGGGT 60.105 55.000 11.18 0.0 35.36 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.747686 GTTCTTCGCCCCAGGACA 59.252 61.111 0.00 0.00 0.00 4.02
181 182 1.797537 GCTTCCGCATCAAACGCAC 60.798 57.895 0.00 0.00 35.78 5.34
188 189 2.115595 CGCATCAAACGCACTGAAAAA 58.884 42.857 0.00 0.00 0.00 1.94
361 362 2.705658 TCACCAACTCTTCTGACCACAT 59.294 45.455 0.00 0.00 0.00 3.21
516 517 6.012745 AGTTTCATTCAATAACTTCCAGGCT 58.987 36.000 0.00 0.00 0.00 4.58
549 550 4.339247 AGCAAAGCTAAGTTGAAAAGCTCA 59.661 37.500 0.71 0.00 45.61 4.26
550 551 5.010415 AGCAAAGCTAAGTTGAAAAGCTCAT 59.990 36.000 0.71 0.00 45.61 2.90
656 657 0.764890 CTTCCCCACCAGAACTGACA 59.235 55.000 3.19 0.00 0.00 3.58
703 704 0.105760 TTCCCTTGGCAGCCTGAAAA 60.106 50.000 14.15 0.00 0.00 2.29
744 745 1.809869 TAGCCTGCGCTACTGACTG 59.190 57.895 9.73 0.00 46.08 3.51
745 746 0.965866 TAGCCTGCGCTACTGACTGT 60.966 55.000 9.73 0.00 46.08 3.55
746 747 1.374758 GCCTGCGCTACTGACTGTT 60.375 57.895 9.73 0.00 0.00 3.16
747 748 0.951040 GCCTGCGCTACTGACTGTTT 60.951 55.000 9.73 0.00 0.00 2.83
748 749 1.671850 GCCTGCGCTACTGACTGTTTA 60.672 52.381 9.73 0.00 0.00 2.01
749 750 2.263077 CCTGCGCTACTGACTGTTTAG 58.737 52.381 9.73 0.00 0.00 1.85
750 751 2.094700 CCTGCGCTACTGACTGTTTAGA 60.095 50.000 9.73 0.00 0.00 2.10
751 752 3.429547 CCTGCGCTACTGACTGTTTAGAT 60.430 47.826 9.73 0.00 0.00 1.98
752 753 4.177026 CTGCGCTACTGACTGTTTAGATT 58.823 43.478 9.73 0.00 0.00 2.40
753 754 3.926527 TGCGCTACTGACTGTTTAGATTG 59.073 43.478 9.73 0.00 0.00 2.67
754 755 3.307242 GCGCTACTGACTGTTTAGATTGG 59.693 47.826 0.00 0.00 0.00 3.16
755 756 4.495422 CGCTACTGACTGTTTAGATTGGT 58.505 43.478 0.00 0.00 0.00 3.67
756 757 4.327357 CGCTACTGACTGTTTAGATTGGTG 59.673 45.833 0.00 0.00 0.00 4.17
757 758 4.631813 GCTACTGACTGTTTAGATTGGTGG 59.368 45.833 0.00 0.00 0.00 4.61
758 759 4.974645 ACTGACTGTTTAGATTGGTGGA 57.025 40.909 0.85 0.00 0.00 4.02
759 760 4.899502 ACTGACTGTTTAGATTGGTGGAG 58.100 43.478 0.85 0.00 0.00 3.86
760 761 4.593206 ACTGACTGTTTAGATTGGTGGAGA 59.407 41.667 0.85 0.00 0.00 3.71
761 762 4.894784 TGACTGTTTAGATTGGTGGAGAC 58.105 43.478 0.00 0.00 0.00 3.36
762 763 4.593206 TGACTGTTTAGATTGGTGGAGACT 59.407 41.667 0.00 0.00 0.00 3.24
763 764 4.899502 ACTGTTTAGATTGGTGGAGACTG 58.100 43.478 0.00 0.00 0.00 3.51
764 765 4.593206 ACTGTTTAGATTGGTGGAGACTGA 59.407 41.667 0.00 0.00 0.00 3.41
765 766 5.152623 TGTTTAGATTGGTGGAGACTGAG 57.847 43.478 0.00 0.00 0.00 3.35
766 767 4.020218 TGTTTAGATTGGTGGAGACTGAGG 60.020 45.833 0.00 0.00 0.00 3.86
767 768 2.630889 AGATTGGTGGAGACTGAGGA 57.369 50.000 0.00 0.00 0.00 3.71
768 769 2.465813 AGATTGGTGGAGACTGAGGAG 58.534 52.381 0.00 0.00 0.00 3.69
769 770 2.183679 GATTGGTGGAGACTGAGGAGT 58.816 52.381 0.00 0.00 33.98 3.85
770 771 2.992847 TTGGTGGAGACTGAGGAGTA 57.007 50.000 0.00 0.00 30.16 2.59
771 772 2.516227 TGGTGGAGACTGAGGAGTAG 57.484 55.000 0.00 0.00 30.16 2.57
772 773 1.006043 TGGTGGAGACTGAGGAGTAGG 59.994 57.143 0.00 0.00 30.16 3.18
773 774 1.686741 GGTGGAGACTGAGGAGTAGGG 60.687 61.905 0.00 0.00 30.16 3.53
774 775 1.285373 GTGGAGACTGAGGAGTAGGGA 59.715 57.143 0.00 0.00 30.16 4.20
775 776 1.285373 TGGAGACTGAGGAGTAGGGAC 59.715 57.143 0.00 0.00 30.16 4.46
776 777 1.670791 GAGACTGAGGAGTAGGGACG 58.329 60.000 0.00 0.00 30.16 4.79
777 778 1.209990 GAGACTGAGGAGTAGGGACGA 59.790 57.143 0.00 0.00 30.16 4.20
778 779 1.847737 AGACTGAGGAGTAGGGACGAT 59.152 52.381 0.00 0.00 30.16 3.73
779 780 3.047115 AGACTGAGGAGTAGGGACGATA 58.953 50.000 0.00 0.00 30.16 2.92
780 781 3.140623 GACTGAGGAGTAGGGACGATAC 58.859 54.545 0.00 0.00 30.16 2.24
781 782 2.144730 CTGAGGAGTAGGGACGATACG 58.855 57.143 0.00 0.00 0.00 3.06
782 783 0.873721 GAGGAGTAGGGACGATACGC 59.126 60.000 0.00 0.00 0.00 4.42
783 784 0.536915 AGGAGTAGGGACGATACGCC 60.537 60.000 0.00 0.00 41.76 5.68
784 785 1.573436 GAGTAGGGACGATACGCCG 59.427 63.158 0.00 0.00 0.00 6.46
785 786 1.153086 AGTAGGGACGATACGCCGT 60.153 57.895 0.00 0.00 46.43 5.68
792 793 2.716484 CGATACGCCGTCGACGTC 60.716 66.667 33.49 23.02 43.88 4.34
793 794 2.716484 GATACGCCGTCGACGTCG 60.716 66.667 35.58 35.58 46.61 5.12
794 795 3.142867 GATACGCCGTCGACGTCGA 62.143 63.158 42.01 34.97 43.82 4.20
802 803 2.949106 TCGACGTCGAACTGGACC 59.051 61.111 36.25 0.00 46.30 4.46
803 804 2.501222 CGACGTCGAACTGGACCG 60.501 66.667 33.35 1.15 43.02 4.79
804 805 2.126580 GACGTCGAACTGGACCGG 60.127 66.667 0.00 0.00 33.30 5.28
805 806 3.621892 GACGTCGAACTGGACCGGG 62.622 68.421 6.32 0.00 33.30 5.73
806 807 3.677648 CGTCGAACTGGACCGGGT 61.678 66.667 6.32 0.00 33.30 5.28
807 808 2.334946 CGTCGAACTGGACCGGGTA 61.335 63.158 6.32 0.00 33.30 3.69
808 809 1.865788 CGTCGAACTGGACCGGGTAA 61.866 60.000 6.32 0.00 33.30 2.85
809 810 0.318120 GTCGAACTGGACCGGGTAAA 59.682 55.000 6.32 0.00 0.00 2.01
810 811 0.318120 TCGAACTGGACCGGGTAAAC 59.682 55.000 6.32 0.00 0.00 2.01
811 812 0.319405 CGAACTGGACCGGGTAAACT 59.681 55.000 6.32 0.00 0.00 2.66
812 813 1.804601 GAACTGGACCGGGTAAACTG 58.195 55.000 6.32 0.54 0.00 3.16
819 820 3.855159 CCGGGTAAACTGGGAGAAG 57.145 57.895 0.00 0.00 42.34 2.85
820 821 0.981943 CCGGGTAAACTGGGAGAAGT 59.018 55.000 0.00 0.00 42.34 3.01
881 882 2.355481 GTCCGTTCGTCCGCTTGT 60.355 61.111 0.00 0.00 0.00 3.16
962 964 0.240145 GGAAAACCTAACACAGCCGC 59.760 55.000 0.00 0.00 0.00 6.53
963 965 0.240145 GAAAACCTAACACAGCCGCC 59.760 55.000 0.00 0.00 0.00 6.13
964 966 1.176619 AAAACCTAACACAGCCGCCC 61.177 55.000 0.00 0.00 0.00 6.13
965 967 3.894547 AACCTAACACAGCCGCCCG 62.895 63.158 0.00 0.00 0.00 6.13
1395 1400 3.199727 GGCAAGAAGAAGAGGAAGAGGAT 59.800 47.826 0.00 0.00 0.00 3.24
1530 1535 5.405571 GTCGTTTCTTGAGCTCAACTTATCA 59.594 40.000 25.16 3.27 0.00 2.15
1533 1538 3.254060 TCTTGAGCTCAACTTATCACGC 58.746 45.455 25.16 0.00 0.00 5.34
1581 1586 1.153823 CTACCAGAAGCCGACACCG 60.154 63.158 0.00 0.00 0.00 4.94
1704 1709 2.668212 CGTCTGCTTTTCCGGCCA 60.668 61.111 2.24 0.00 0.00 5.36
1788 1793 7.446319 CAGGTCCATAGCATGATTGAGAAATTA 59.554 37.037 0.00 0.00 0.00 1.40
1881 1886 2.977914 AGGTCGAATCCTGACATTGTG 58.022 47.619 0.00 0.00 38.10 3.33
1965 1970 4.836125 TCTTGCAGTTTTGATCCTTGAC 57.164 40.909 0.00 0.00 0.00 3.18
1974 1979 3.616956 TTGATCCTTGACGAAGCTGAT 57.383 42.857 0.00 0.00 0.00 2.90
2061 2066 2.434428 CAGACCATGCTCTTTTCTGCT 58.566 47.619 0.00 0.00 0.00 4.24
2070 2075 3.433274 TGCTCTTTTCTGCTACAATGACG 59.567 43.478 0.00 0.00 0.00 4.35
2076 2081 3.441244 TGCTACAATGACGGAGCAG 57.559 52.632 0.00 0.00 39.93 4.24
2472 2477 5.240623 TCGAACTGTCATAAATTTTGCCTGT 59.759 36.000 0.00 0.00 0.00 4.00
2541 2546 0.769873 CTGGCAGGGAAGGATATGCT 59.230 55.000 6.61 0.00 38.71 3.79
2667 2672 5.921976 TGACTGTGCAAAATTAATTGAGCAG 59.078 36.000 21.40 16.70 38.43 4.24
2967 2972 7.222161 GTGAGAAAAACCTACCTAGGAAGAAA 58.778 38.462 17.98 0.00 46.63 2.52
3078 3083 5.422331 AGCAAAGAGTAGCCAATCTGTAGTA 59.578 40.000 0.00 0.00 0.00 1.82
3135 3140 2.809174 GGCAAAACCGGCATTCGC 60.809 61.111 0.00 0.00 37.59 4.70
3136 3141 2.258286 GCAAAACCGGCATTCGCT 59.742 55.556 0.00 0.00 38.60 4.93
3249 3254 1.067295 TGAGTGAATGGAAGCAGGGT 58.933 50.000 0.00 0.00 0.00 4.34
3456 3461 5.308497 TCCTCATGTTGTTCCCTGTTTAGTA 59.692 40.000 0.00 0.00 0.00 1.82
3525 3530 0.310854 CTTGTGGTTTCCGGTTCAGC 59.689 55.000 0.00 0.00 0.00 4.26
3534 3539 3.331478 TTCCGGTTCAGCGGTTTATTA 57.669 42.857 16.60 0.00 0.00 0.98
3535 3540 3.547054 TCCGGTTCAGCGGTTTATTAT 57.453 42.857 16.60 0.00 0.00 1.28
3536 3541 4.669206 TCCGGTTCAGCGGTTTATTATA 57.331 40.909 16.60 0.00 0.00 0.98
3537 3542 4.370917 TCCGGTTCAGCGGTTTATTATAC 58.629 43.478 16.60 0.00 0.00 1.47
3538 3543 4.099881 TCCGGTTCAGCGGTTTATTATACT 59.900 41.667 16.60 0.00 0.00 2.12
3539 3544 4.446719 CCGGTTCAGCGGTTTATTATACTC 59.553 45.833 9.33 0.00 0.00 2.59
3540 3545 4.446719 CGGTTCAGCGGTTTATTATACTCC 59.553 45.833 0.00 0.00 0.00 3.85
3541 3546 4.753610 GGTTCAGCGGTTTATTATACTCCC 59.246 45.833 0.00 0.00 0.00 4.30
3542 3547 5.454329 GGTTCAGCGGTTTATTATACTCCCT 60.454 44.000 0.00 0.00 0.00 4.20
3543 3548 5.464030 TCAGCGGTTTATTATACTCCCTC 57.536 43.478 0.00 0.00 0.00 4.30
3544 3549 4.282703 TCAGCGGTTTATTATACTCCCTCC 59.717 45.833 0.00 0.00 0.00 4.30
3545 3550 3.257624 AGCGGTTTATTATACTCCCTCCG 59.742 47.826 0.00 0.00 38.67 4.63
3546 3551 3.006217 GCGGTTTATTATACTCCCTCCGT 59.994 47.826 0.00 0.00 38.07 4.69
3547 3552 4.502087 GCGGTTTATTATACTCCCTCCGTT 60.502 45.833 0.00 0.00 38.07 4.44
3548 3553 5.225642 CGGTTTATTATACTCCCTCCGTTC 58.774 45.833 0.00 0.00 0.00 3.95
3549 3554 5.010415 CGGTTTATTATACTCCCTCCGTTCT 59.990 44.000 0.00 0.00 0.00 3.01
3550 3555 6.462067 CGGTTTATTATACTCCCTCCGTTCTT 60.462 42.308 0.00 0.00 0.00 2.52
3551 3556 7.255590 CGGTTTATTATACTCCCTCCGTTCTTA 60.256 40.741 0.00 0.00 0.00 2.10
3552 3557 8.424133 GGTTTATTATACTCCCTCCGTTCTTAA 58.576 37.037 0.00 0.00 0.00 1.85
3553 3558 9.822185 GTTTATTATACTCCCTCCGTTCTTAAA 57.178 33.333 0.00 0.00 0.00 1.52
3557 3562 8.773033 TTATACTCCCTCCGTTCTTAAATACT 57.227 34.615 0.00 0.00 0.00 2.12
3558 3563 7.672122 ATACTCCCTCCGTTCTTAAATACTT 57.328 36.000 0.00 0.00 0.00 2.24
3559 3564 5.731591 ACTCCCTCCGTTCTTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
3560 3565 5.247792 ACTCCCTCCGTTCTTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
3561 3566 5.727434 TCCCTCCGTTCTTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
3562 3567 5.482878 TCCCTCCGTTCTTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
3563 3568 6.013984 TCCCTCCGTTCTTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
3564 3569 6.653740 CCCTCCGTTCTTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
3565 3570 7.148457 CCCTCCGTTCTTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
3566 3571 7.603024 CCTCCGTTCTTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
3567 3572 9.635520 CTCCGTTCTTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
3568 3573 9.635520 TCCGTTCTTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
3569 3574 8.870879 CCGTTCTTAAATACTTGTCTTTCTAGG 58.129 37.037 0.00 0.00 0.00 3.02
3570 3575 8.381387 CGTTCTTAAATACTTGTCTTTCTAGGC 58.619 37.037 0.00 0.00 0.00 3.93
3571 3576 9.216117 GTTCTTAAATACTTGTCTTTCTAGGCA 57.784 33.333 0.00 0.00 33.22 4.75
3572 3577 9.959721 TTCTTAAATACTTGTCTTTCTAGGCAT 57.040 29.630 0.00 0.00 35.56 4.40
3573 3578 9.959721 TCTTAAATACTTGTCTTTCTAGGCATT 57.040 29.630 0.00 0.00 35.56 3.56
3576 3581 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3577 3582 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3578 3583 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3579 3584 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3580 3585 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3581 3586 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
3582 3587 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
3583 3588 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
3584 3589 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
3585 3590 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
3586 3591 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
3587 3592 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
3588 3593 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
3589 3594 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
3590 3595 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3591 3596 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3592 3597 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
3593 3598 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3594 3599 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3595 3600 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3596 3601 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3597 3602 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
3598 3603 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
3599 3604 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
3615 3620 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
3616 3621 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
3657 3662 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
3658 3663 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
3659 3664 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
3660 3665 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
3661 3666 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
3662 3667 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
3663 3668 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
3664 3669 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
3665 3670 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
3666 3671 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
3667 3672 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
3668 3673 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
3669 3674 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
3670 3675 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
3671 3676 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
3672 3677 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
3673 3678 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
3674 3679 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
3675 3680 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
3676 3681 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
3677 3682 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
3678 3683 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
3679 3684 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
3680 3685 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
3681 3686 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
3682 3687 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3683 3688 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3685 3690 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3686 3691 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3687 3692 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3688 3693 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3689 3694 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3690 3695 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
3691 3696 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3692 3697 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3693 3698 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3694 3699 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3695 3700 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3696 3701 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3713 3718 5.012251 GGAGGGAGTAGTTTCTTTCAGTTCT 59.988 44.000 0.00 0.00 0.00 3.01
3749 3761 3.226777 TCCATTTTCCGCTTTTCCTTCA 58.773 40.909 0.00 0.00 0.00 3.02
3778 3790 7.562454 TCCTTTTTCTGTCGTTTATTTCAGT 57.438 32.000 0.00 0.00 0.00 3.41
3898 4158 2.325583 TGGGTATTGGCATTCGTCTC 57.674 50.000 0.00 0.00 0.00 3.36
3899 4159 1.557371 TGGGTATTGGCATTCGTCTCA 59.443 47.619 0.00 0.00 0.00 3.27
3922 4182 3.244422 GCTGAATATCCCGAATACCACCA 60.244 47.826 0.00 0.00 0.00 4.17
3942 4202 4.581868 CCATTTGGTTGATCTTGGCATTT 58.418 39.130 0.00 0.00 0.00 2.32
4007 4267 2.506957 AAAAACCTGCCGGCCCAAG 61.507 57.895 26.77 15.21 0.00 3.61
4015 4275 4.659172 CCGGCCCAAGTTGGAGCA 62.659 66.667 24.06 0.00 40.96 4.26
4078 4338 3.416490 CGTCAGTGCGGGTGTTTT 58.584 55.556 0.00 0.00 0.00 2.43
4079 4339 1.010125 CGTCAGTGCGGGTGTTTTG 60.010 57.895 0.00 0.00 0.00 2.44
4080 4340 1.299089 GTCAGTGCGGGTGTTTTGC 60.299 57.895 0.00 0.00 0.00 3.68
4083 4343 1.453015 AGTGCGGGTGTTTTGCTGA 60.453 52.632 0.00 0.00 0.00 4.26
4085 4345 1.750780 TGCGGGTGTTTTGCTGACA 60.751 52.632 0.00 0.00 0.00 3.58
4086 4346 1.008538 GCGGGTGTTTTGCTGACAG 60.009 57.895 0.00 0.00 0.00 3.51
4087 4347 1.008538 CGGGTGTTTTGCTGACAGC 60.009 57.895 20.86 20.86 42.97 4.40
4089 4349 2.419057 GGTGTTTTGCTGACAGCCT 58.581 52.632 24.33 0.00 41.51 4.58
4090 4350 0.312102 GGTGTTTTGCTGACAGCCTC 59.688 55.000 24.33 12.06 41.51 4.70
4091 4351 0.312102 GTGTTTTGCTGACAGCCTCC 59.688 55.000 24.33 10.25 41.51 4.30
4092 4352 0.823356 TGTTTTGCTGACAGCCTCCC 60.823 55.000 24.33 10.59 41.51 4.30
4093 4353 0.538287 GTTTTGCTGACAGCCTCCCT 60.538 55.000 24.33 0.00 41.51 4.20
4094 4354 0.250901 TTTTGCTGACAGCCTCCCTC 60.251 55.000 24.33 0.00 41.51 4.30
4095 4355 2.129555 TTTGCTGACAGCCTCCCTCC 62.130 60.000 24.33 0.00 41.51 4.30
4097 4357 3.086600 CTGACAGCCTCCCTCCCC 61.087 72.222 0.00 0.00 0.00 4.81
4098 4358 3.615811 TGACAGCCTCCCTCCCCT 61.616 66.667 0.00 0.00 0.00 4.79
4099 4359 2.766229 GACAGCCTCCCTCCCCTC 60.766 72.222 0.00 0.00 0.00 4.30
4100 4360 3.288381 ACAGCCTCCCTCCCCTCT 61.288 66.667 0.00 0.00 0.00 3.69
4101 4361 2.041928 CAGCCTCCCTCCCCTCTT 59.958 66.667 0.00 0.00 0.00 2.85
4102 4362 2.069430 CAGCCTCCCTCCCCTCTTC 61.069 68.421 0.00 0.00 0.00 2.87
4103 4363 3.157949 GCCTCCCTCCCCTCTTCG 61.158 72.222 0.00 0.00 0.00 3.79
4104 4364 2.364961 CCTCCCTCCCCTCTTCGT 59.635 66.667 0.00 0.00 0.00 3.85
4105 4365 1.619143 CCTCCCTCCCCTCTTCGTA 59.381 63.158 0.00 0.00 0.00 3.43
4106 4366 0.468400 CCTCCCTCCCCTCTTCGTAG 60.468 65.000 0.00 0.00 0.00 3.51
4107 4367 0.551879 CTCCCTCCCCTCTTCGTAGA 59.448 60.000 0.00 0.00 0.00 2.59
4108 4368 1.146152 CTCCCTCCCCTCTTCGTAGAT 59.854 57.143 0.00 0.00 35.04 1.98
4114 4374 2.641321 TCCCCTCTTCGTAGATATCCGA 59.359 50.000 0.00 0.00 35.04 4.55
4117 4377 2.748532 CCTCTTCGTAGATATCCGACCC 59.251 54.545 0.00 0.00 35.04 4.46
4120 4380 3.327172 TCTTCGTAGATATCCGACCCTCT 59.673 47.826 0.00 0.00 35.04 3.69
4121 4381 3.331478 TCGTAGATATCCGACCCTCTC 57.669 52.381 0.00 0.00 0.00 3.20
4127 4387 0.635009 TATCCGACCCTCTCCCTGTT 59.365 55.000 0.00 0.00 0.00 3.16
4131 4391 0.900647 CGACCCTCTCCCTGTTCAGT 60.901 60.000 0.00 0.00 0.00 3.41
4133 4393 0.104934 ACCCTCTCCCTGTTCAGTGT 60.105 55.000 0.00 0.00 0.00 3.55
4165 4425 6.374894 CCTCTTTGCTTGATCTCTCATCTTTT 59.625 38.462 0.00 0.00 0.00 2.27
4169 4429 5.813383 TGCTTGATCTCTCATCTTTTTCCT 58.187 37.500 0.00 0.00 0.00 3.36
4199 4461 1.215655 CGCGGCCGAGATTAAGAAGG 61.216 60.000 33.48 0.00 36.29 3.46
4204 4466 1.671328 GCCGAGATTAAGAAGGCCAAC 59.329 52.381 5.01 0.00 41.81 3.77
4205 4467 1.933853 CCGAGATTAAGAAGGCCAACG 59.066 52.381 5.01 0.00 0.00 4.10
4220 4482 1.303888 AACGGCGACCTCTACCTCA 60.304 57.895 16.62 0.00 0.00 3.86
4221 4483 0.896940 AACGGCGACCTCTACCTCAA 60.897 55.000 16.62 0.00 0.00 3.02
4222 4484 0.683504 ACGGCGACCTCTACCTCAAT 60.684 55.000 16.62 0.00 0.00 2.57
4287 4550 4.397730 TGCTGTCAAGTGTGTATTGTGTTT 59.602 37.500 0.00 0.00 0.00 2.83
4317 4581 4.915022 GCTAGTGGCAAGCAATTTTATGCA 60.915 41.667 6.30 0.00 43.91 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 3.511934 ACAAGACGGATAGCTGACTTCTT 59.488 43.478 1.45 0.00 34.01 2.52
181 182 4.024218 GGATCTGATCCGAGCATTTTTCAG 60.024 45.833 20.20 0.00 40.13 3.02
361 362 3.560025 GGAAGAGATGTTTTGGCTCAGGA 60.560 47.826 0.00 0.00 0.00 3.86
516 517 3.005897 ACTTAGCTTTGCTCTCGAGACAA 59.994 43.478 12.08 17.06 40.44 3.18
549 550 2.933139 AGGAATGGGGTTTAGGGACAAT 59.067 45.455 0.00 0.00 0.00 2.71
550 551 2.310647 GAGGAATGGGGTTTAGGGACAA 59.689 50.000 0.00 0.00 0.00 3.18
685 686 0.827507 GTTTTCAGGCTGCCAAGGGA 60.828 55.000 22.65 9.75 0.00 4.20
703 704 3.153919 ACCAGTATTTTCAATGGCGTGT 58.846 40.909 0.00 0.00 36.21 4.49
744 745 4.223032 TCCTCAGTCTCCACCAATCTAAAC 59.777 45.833 0.00 0.00 0.00 2.01
745 746 4.425772 TCCTCAGTCTCCACCAATCTAAA 58.574 43.478 0.00 0.00 0.00 1.85
746 747 4.026744 CTCCTCAGTCTCCACCAATCTAA 58.973 47.826 0.00 0.00 0.00 2.10
747 748 3.011821 ACTCCTCAGTCTCCACCAATCTA 59.988 47.826 0.00 0.00 0.00 1.98
748 749 2.225496 ACTCCTCAGTCTCCACCAATCT 60.225 50.000 0.00 0.00 0.00 2.40
749 750 2.183679 ACTCCTCAGTCTCCACCAATC 58.816 52.381 0.00 0.00 0.00 2.67
750 751 2.334006 ACTCCTCAGTCTCCACCAAT 57.666 50.000 0.00 0.00 0.00 3.16
751 752 2.557676 CCTACTCCTCAGTCTCCACCAA 60.558 54.545 0.00 0.00 33.62 3.67
752 753 1.006043 CCTACTCCTCAGTCTCCACCA 59.994 57.143 0.00 0.00 33.62 4.17
753 754 1.686741 CCCTACTCCTCAGTCTCCACC 60.687 61.905 0.00 0.00 33.62 4.61
754 755 1.285373 TCCCTACTCCTCAGTCTCCAC 59.715 57.143 0.00 0.00 33.62 4.02
755 756 1.285373 GTCCCTACTCCTCAGTCTCCA 59.715 57.143 0.00 0.00 33.62 3.86
756 757 1.747898 CGTCCCTACTCCTCAGTCTCC 60.748 61.905 0.00 0.00 33.62 3.71
757 758 1.209990 TCGTCCCTACTCCTCAGTCTC 59.790 57.143 0.00 0.00 33.62 3.36
758 759 1.287217 TCGTCCCTACTCCTCAGTCT 58.713 55.000 0.00 0.00 33.62 3.24
759 760 2.351706 ATCGTCCCTACTCCTCAGTC 57.648 55.000 0.00 0.00 33.62 3.51
760 761 2.485124 CGTATCGTCCCTACTCCTCAGT 60.485 54.545 0.00 0.00 36.55 3.41
761 762 2.144730 CGTATCGTCCCTACTCCTCAG 58.855 57.143 0.00 0.00 0.00 3.35
762 763 1.813092 GCGTATCGTCCCTACTCCTCA 60.813 57.143 0.00 0.00 0.00 3.86
763 764 0.873721 GCGTATCGTCCCTACTCCTC 59.126 60.000 0.00 0.00 0.00 3.71
764 765 0.536915 GGCGTATCGTCCCTACTCCT 60.537 60.000 0.00 0.00 0.00 3.69
765 766 1.849976 CGGCGTATCGTCCCTACTCC 61.850 65.000 0.00 0.00 0.00 3.85
766 767 1.162800 ACGGCGTATCGTCCCTACTC 61.163 60.000 12.58 0.00 39.34 2.59
767 768 1.153086 ACGGCGTATCGTCCCTACT 60.153 57.895 12.58 0.00 39.34 2.57
768 769 3.425422 ACGGCGTATCGTCCCTAC 58.575 61.111 12.58 0.00 39.34 3.18
774 775 3.425938 GACGTCGACGGCGTATCGT 62.426 63.158 37.89 26.76 46.83 3.73
775 776 2.716484 GACGTCGACGGCGTATCG 60.716 66.667 37.89 19.70 43.04 2.92
786 787 2.501222 CGGTCCAGTTCGACGTCG 60.501 66.667 31.30 31.30 41.45 5.12
787 788 2.126580 CCGGTCCAGTTCGACGTC 60.127 66.667 5.18 5.18 33.30 4.34
788 789 3.677648 CCCGGTCCAGTTCGACGT 61.678 66.667 0.00 0.00 33.30 4.34
789 790 1.865788 TTACCCGGTCCAGTTCGACG 61.866 60.000 0.00 0.00 33.30 5.12
790 791 0.318120 TTTACCCGGTCCAGTTCGAC 59.682 55.000 0.00 0.00 0.00 4.20
791 792 0.318120 GTTTACCCGGTCCAGTTCGA 59.682 55.000 0.00 0.00 0.00 3.71
792 793 0.319405 AGTTTACCCGGTCCAGTTCG 59.681 55.000 0.00 0.00 0.00 3.95
793 794 1.609841 CCAGTTTACCCGGTCCAGTTC 60.610 57.143 0.00 0.00 0.00 3.01
794 795 0.399075 CCAGTTTACCCGGTCCAGTT 59.601 55.000 0.00 0.00 0.00 3.16
795 796 1.486145 CCCAGTTTACCCGGTCCAGT 61.486 60.000 0.00 0.00 0.00 4.00
796 797 1.196104 TCCCAGTTTACCCGGTCCAG 61.196 60.000 0.00 0.00 0.00 3.86
797 798 1.152074 TCCCAGTTTACCCGGTCCA 60.152 57.895 0.00 0.00 0.00 4.02
798 799 0.906282 TCTCCCAGTTTACCCGGTCC 60.906 60.000 0.00 0.00 0.00 4.46
799 800 0.978907 TTCTCCCAGTTTACCCGGTC 59.021 55.000 0.00 0.00 0.00 4.79
800 801 0.981943 CTTCTCCCAGTTTACCCGGT 59.018 55.000 0.00 0.00 0.00 5.28
801 802 0.981943 ACTTCTCCCAGTTTACCCGG 59.018 55.000 0.00 0.00 0.00 5.73
802 803 1.900486 AGACTTCTCCCAGTTTACCCG 59.100 52.381 0.00 0.00 0.00 5.28
803 804 2.094130 CGAGACTTCTCCCAGTTTACCC 60.094 54.545 0.54 0.00 39.79 3.69
804 805 2.561858 ACGAGACTTCTCCCAGTTTACC 59.438 50.000 0.54 0.00 39.79 2.85
805 806 3.938289 ACGAGACTTCTCCCAGTTTAC 57.062 47.619 0.54 0.00 39.79 2.01
806 807 4.142227 GCATACGAGACTTCTCCCAGTTTA 60.142 45.833 0.54 0.00 39.79 2.01
807 808 3.368531 GCATACGAGACTTCTCCCAGTTT 60.369 47.826 0.54 0.00 39.79 2.66
808 809 2.166664 GCATACGAGACTTCTCCCAGTT 59.833 50.000 0.54 0.00 39.79 3.16
809 810 1.751924 GCATACGAGACTTCTCCCAGT 59.248 52.381 0.54 0.00 39.79 4.00
810 811 2.028130 AGCATACGAGACTTCTCCCAG 58.972 52.381 0.54 0.00 39.79 4.45
811 812 2.145397 AGCATACGAGACTTCTCCCA 57.855 50.000 0.54 0.00 39.79 4.37
812 813 2.030628 GCTAGCATACGAGACTTCTCCC 60.031 54.545 10.63 0.00 39.79 4.30
813 814 2.350007 CGCTAGCATACGAGACTTCTCC 60.350 54.545 16.45 0.00 39.79 3.71
814 815 2.544686 TCGCTAGCATACGAGACTTCTC 59.455 50.000 16.45 0.00 39.55 2.87
815 816 2.562635 TCGCTAGCATACGAGACTTCT 58.437 47.619 16.45 0.00 33.69 2.85
816 817 3.546002 ATCGCTAGCATACGAGACTTC 57.454 47.619 16.45 0.00 42.31 3.01
817 818 3.551046 CCAATCGCTAGCATACGAGACTT 60.551 47.826 16.45 0.00 42.31 3.01
818 819 2.030717 CCAATCGCTAGCATACGAGACT 60.031 50.000 16.45 0.00 42.31 3.24
819 820 2.320367 CCAATCGCTAGCATACGAGAC 58.680 52.381 16.45 0.00 42.31 3.36
820 821 1.269723 CCCAATCGCTAGCATACGAGA 59.730 52.381 16.45 2.62 42.31 4.04
1290 1292 0.249531 TCTCCTCGATCTCGTCCTCG 60.250 60.000 0.00 0.00 40.80 4.63
1395 1400 1.132527 TCTTCTTCCCCCACCTCTTCA 60.133 52.381 0.00 0.00 0.00 3.02
1452 1457 3.493350 CGAAGAATTGAGATGGATCCGGT 60.493 47.826 7.39 0.00 0.00 5.28
1530 1535 2.125512 GCTCGAATGAGTGGGCGT 60.126 61.111 0.00 0.00 44.48 5.68
1533 1538 0.742281 CACAGGCTCGAATGAGTGGG 60.742 60.000 0.00 0.00 44.48 4.61
1575 1580 3.195698 GCGGCCTGAATCGGTGTC 61.196 66.667 0.00 0.00 0.00 3.67
1581 1586 1.285023 GATGCATGCGGCCTGAATC 59.715 57.895 14.09 10.00 43.89 2.52
1761 1766 3.713248 TCTCAATCATGCTATGGACCTGT 59.287 43.478 0.00 0.00 0.00 4.00
1788 1793 4.040755 ACCTGATATCAGTAAACTGGGCT 58.959 43.478 27.03 3.24 43.91 5.19
1965 1970 2.530177 TCTAGCAAACGATCAGCTTCG 58.470 47.619 6.27 6.27 44.56 3.79
1974 1979 4.138290 TGAAACCCAATTCTAGCAAACGA 58.862 39.130 0.00 0.00 0.00 3.85
2061 2066 2.021457 TCGATCTGCTCCGTCATTGTA 58.979 47.619 0.00 0.00 0.00 2.41
2070 2075 3.495124 GAGCTCATCGATCTGCTCC 57.505 57.895 26.43 15.21 44.16 4.70
2088 2093 4.274865 GCTTGTTCAGAGAAAGTTTCACG 58.725 43.478 17.65 8.11 0.00 4.35
2352 2357 1.986575 CTAAAGCCTCAAGCCGCTGC 61.987 60.000 0.00 0.00 45.47 5.25
2472 2477 3.810941 GGTAAGTTTTGACATCACGTGGA 59.189 43.478 17.00 2.69 0.00 4.02
2541 2546 7.926674 ATCATCATCAGTAACAAATGTCACA 57.073 32.000 0.00 0.00 0.00 3.58
2667 2672 5.314923 TGTTAGAAATTTGATGCTCCAGC 57.685 39.130 0.00 0.00 42.50 4.85
2967 2972 1.875963 CGCCTCCAATTTTCTGCGT 59.124 52.632 0.00 0.00 37.44 5.24
3135 3140 7.148272 CCTTTCTCATTCTTTCCTTTGCTAGAG 60.148 40.741 0.00 0.00 0.00 2.43
3136 3141 6.656693 CCTTTCTCATTCTTTCCTTTGCTAGA 59.343 38.462 0.00 0.00 0.00 2.43
3249 3254 3.118186 TGTCCTTTTTCTTCAGGGAACGA 60.118 43.478 0.00 0.00 0.00 3.85
3403 3408 6.665680 TGGCAATTCTTTAGGGCAAACTTATA 59.334 34.615 0.00 0.00 32.53 0.98
3525 3530 4.861102 ACGGAGGGAGTATAATAAACCG 57.139 45.455 0.00 0.00 42.78 4.44
3534 3539 7.125356 ACAAGTATTTAAGAACGGAGGGAGTAT 59.875 37.037 0.00 0.00 0.00 2.12
3535 3540 6.438425 ACAAGTATTTAAGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
3536 3541 5.247792 ACAAGTATTTAAGAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
3537 3542 5.731591 ACAAGTATTTAAGAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
3538 3543 5.482878 AGACAAGTATTTAAGAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
3539 3544 5.731591 AGACAAGTATTTAAGAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
3540 3545 7.603024 AGAAAGACAAGTATTTAAGAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
3541 3546 8.535690 AGAAAGACAAGTATTTAAGAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
3542 3547 9.635520 CTAGAAAGACAAGTATTTAAGAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
3543 3548 8.870879 CCTAGAAAGACAAGTATTTAAGAACGG 58.129 37.037 0.00 0.00 0.00 4.44
3544 3549 8.381387 GCCTAGAAAGACAAGTATTTAAGAACG 58.619 37.037 0.00 0.00 0.00 3.95
3545 3550 9.216117 TGCCTAGAAAGACAAGTATTTAAGAAC 57.784 33.333 0.00 0.00 0.00 3.01
3546 3551 9.959721 ATGCCTAGAAAGACAAGTATTTAAGAA 57.040 29.630 0.00 0.00 0.00 2.52
3547 3552 9.959721 AATGCCTAGAAAGACAAGTATTTAAGA 57.040 29.630 0.00 0.00 0.00 2.10
3550 3555 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3551 3556 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3552 3557 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
3553 3558 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3554 3559 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
3555 3560 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
3556 3561 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3557 3562 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
3558 3563 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
3559 3564 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
3560 3565 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
3561 3566 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
3562 3567 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
3563 3568 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
3564 3569 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
3565 3570 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
3566 3571 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
3567 3572 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3568 3573 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3569 3574 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3570 3575 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3571 3576 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3572 3577 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3573 3578 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
3574 3579 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
3575 3580 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
3576 3581 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
3577 3582 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
3578 3583 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
3579 3584 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
3580 3585 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
3581 3586 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
3582 3587 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
3583 3588 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
3584 3589 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
3585 3590 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
3586 3591 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
3587 3592 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
3588 3593 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
3589 3594 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
3590 3595 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
3591 3596 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
3592 3597 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
3633 3638 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
3634 3639 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
3636 3641 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
3637 3642 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
3638 3643 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
3639 3644 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
3640 3645 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
3641 3646 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
3642 3647 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
3643 3648 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
3644 3649 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
3645 3650 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
3646 3651 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
3647 3652 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
3648 3653 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
3649 3654 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
3650 3655 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
3651 3656 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
3652 3657 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
3653 3658 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
3654 3659 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
3655 3660 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
3656 3661 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3657 3662 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3659 3664 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3660 3665 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3661 3666 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3662 3667 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3663 3668 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3664 3669 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3665 3670 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3666 3671 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3667 3672 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3668 3673 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3669 3674 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3670 3675 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3671 3676 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3672 3677 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3673 3678 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3674 3679 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3675 3680 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3676 3681 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3677 3682 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3678 3683 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3679 3684 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3680 3685 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3681 3686 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3682 3687 3.011032 AGAAACTACTCCCTCCGTTCCTA 59.989 47.826 0.00 0.00 0.00 2.94
3683 3688 2.177734 GAAACTACTCCCTCCGTTCCT 58.822 52.381 0.00 0.00 0.00 3.36
3684 3689 2.177734 AGAAACTACTCCCTCCGTTCC 58.822 52.381 0.00 0.00 0.00 3.62
3685 3690 3.957591 AAGAAACTACTCCCTCCGTTC 57.042 47.619 0.00 0.00 0.00 3.95
3686 3691 3.644738 TGAAAGAAACTACTCCCTCCGTT 59.355 43.478 0.00 0.00 0.00 4.44
3687 3692 3.236896 TGAAAGAAACTACTCCCTCCGT 58.763 45.455 0.00 0.00 0.00 4.69
3688 3693 3.258622 ACTGAAAGAAACTACTCCCTCCG 59.741 47.826 0.00 0.00 37.43 4.63
3689 3694 4.893829 ACTGAAAGAAACTACTCCCTCC 57.106 45.455 0.00 0.00 37.43 4.30
3690 3695 6.104146 AGAACTGAAAGAAACTACTCCCTC 57.896 41.667 0.00 0.00 37.43 4.30
3691 3696 6.502074 AAGAACTGAAAGAAACTACTCCCT 57.498 37.500 0.00 0.00 37.43 4.20
3692 3697 8.850007 ATAAAGAACTGAAAGAAACTACTCCC 57.150 34.615 0.00 0.00 37.43 4.30
3749 3761 9.678941 GAAATAAACGACAGAAAAAGGAAATCT 57.321 29.630 0.00 0.00 0.00 2.40
3898 4158 3.997021 GTGGTATTCGGGATATTCAGCTG 59.003 47.826 7.63 7.63 0.00 4.24
3899 4159 3.008049 GGTGGTATTCGGGATATTCAGCT 59.992 47.826 0.00 0.00 0.00 4.24
3922 4182 7.093201 ACAGATAAATGCCAAGATCAACCAAAT 60.093 33.333 0.00 0.00 0.00 2.32
3942 4202 2.101783 CTTGCCCAAATGCCACAGATA 58.898 47.619 0.00 0.00 0.00 1.98
4062 4322 1.299089 GCAAAACACCCGCACTGAC 60.299 57.895 0.00 0.00 0.00 3.51
4063 4323 1.453015 AGCAAAACACCCGCACTGA 60.453 52.632 0.00 0.00 0.00 3.41
4064 4324 1.299316 CAGCAAAACACCCGCACTG 60.299 57.895 0.00 0.00 0.00 3.66
4067 4327 1.723608 CTGTCAGCAAAACACCCGCA 61.724 55.000 0.00 0.00 0.00 5.69
4068 4328 1.008538 CTGTCAGCAAAACACCCGC 60.009 57.895 0.00 0.00 0.00 6.13
4070 4330 1.109323 AGGCTGTCAGCAAAACACCC 61.109 55.000 25.68 6.27 44.75 4.61
4071 4331 0.312102 GAGGCTGTCAGCAAAACACC 59.688 55.000 25.68 7.00 44.75 4.16
4073 4333 0.823356 GGGAGGCTGTCAGCAAAACA 60.823 55.000 25.68 0.00 44.75 2.83
4074 4334 0.538287 AGGGAGGCTGTCAGCAAAAC 60.538 55.000 25.68 12.92 44.75 2.43
4077 4337 2.596851 GGAGGGAGGCTGTCAGCAA 61.597 63.158 25.68 0.00 44.75 3.91
4078 4338 3.005539 GGAGGGAGGCTGTCAGCA 61.006 66.667 25.68 0.00 44.75 4.41
4079 4339 3.791586 GGGAGGGAGGCTGTCAGC 61.792 72.222 16.93 16.93 41.46 4.26
4080 4340 3.086600 GGGGAGGGAGGCTGTCAG 61.087 72.222 0.00 0.00 0.00 3.51
4083 4343 2.831394 GAAGAGGGGAGGGAGGCTGT 62.831 65.000 0.00 0.00 0.00 4.40
4085 4345 2.370633 GAAGAGGGGAGGGAGGCT 59.629 66.667 0.00 0.00 0.00 4.58
4086 4346 2.584873 TACGAAGAGGGGAGGGAGGC 62.585 65.000 0.00 0.00 0.00 4.70
4087 4347 0.468400 CTACGAAGAGGGGAGGGAGG 60.468 65.000 0.00 0.00 0.00 4.30
4088 4348 0.551879 TCTACGAAGAGGGGAGGGAG 59.448 60.000 0.00 0.00 0.00 4.30
4089 4349 1.232909 ATCTACGAAGAGGGGAGGGA 58.767 55.000 0.00 0.00 34.49 4.20
4090 4350 2.973983 TATCTACGAAGAGGGGAGGG 57.026 55.000 0.00 0.00 34.49 4.30
4091 4351 3.358118 GGATATCTACGAAGAGGGGAGG 58.642 54.545 2.05 0.00 34.49 4.30
4092 4352 3.011119 CGGATATCTACGAAGAGGGGAG 58.989 54.545 2.05 0.00 34.49 4.30
4093 4353 2.641321 TCGGATATCTACGAAGAGGGGA 59.359 50.000 2.05 0.00 36.01 4.81
4094 4354 2.748532 GTCGGATATCTACGAAGAGGGG 59.251 54.545 2.05 0.00 41.17 4.79
4095 4355 2.748532 GGTCGGATATCTACGAAGAGGG 59.251 54.545 2.05 0.00 41.17 4.30
4097 4357 3.677190 AGGGTCGGATATCTACGAAGAG 58.323 50.000 2.05 0.00 41.17 2.85
4098 4358 3.327172 AGAGGGTCGGATATCTACGAAGA 59.673 47.826 2.05 0.00 41.17 2.87
4099 4359 3.677190 AGAGGGTCGGATATCTACGAAG 58.323 50.000 2.05 0.00 41.17 3.79
4100 4360 3.558746 GGAGAGGGTCGGATATCTACGAA 60.559 52.174 2.05 0.00 41.17 3.85
4101 4361 2.027377 GGAGAGGGTCGGATATCTACGA 60.027 54.545 2.05 1.22 36.68 3.43
4102 4362 2.358015 GGAGAGGGTCGGATATCTACG 58.642 57.143 2.05 0.00 0.00 3.51
4103 4363 2.309458 AGGGAGAGGGTCGGATATCTAC 59.691 54.545 2.05 1.70 0.00 2.59
4104 4364 2.309162 CAGGGAGAGGGTCGGATATCTA 59.691 54.545 2.05 0.00 0.00 1.98
4105 4365 1.076350 CAGGGAGAGGGTCGGATATCT 59.924 57.143 2.05 0.00 0.00 1.98
4106 4366 1.203075 ACAGGGAGAGGGTCGGATATC 60.203 57.143 0.00 0.00 0.00 1.63
4107 4367 0.861155 ACAGGGAGAGGGTCGGATAT 59.139 55.000 0.00 0.00 0.00 1.63
4108 4368 0.635009 AACAGGGAGAGGGTCGGATA 59.365 55.000 0.00 0.00 0.00 2.59
4114 4374 0.104934 ACACTGAACAGGGAGAGGGT 60.105 55.000 11.18 0.00 35.36 4.34
4117 4377 1.342074 TGGACACTGAACAGGGAGAG 58.658 55.000 11.18 0.00 35.36 3.20
4120 4380 1.902508 GAGATGGACACTGAACAGGGA 59.097 52.381 11.18 0.00 35.36 4.20
4121 4381 1.065854 GGAGATGGACACTGAACAGGG 60.066 57.143 2.28 2.28 37.98 4.45
4127 4387 2.027745 GCAAAGAGGAGATGGACACTGA 60.028 50.000 0.00 0.00 0.00 3.41
4131 4391 2.639347 TCAAGCAAAGAGGAGATGGACA 59.361 45.455 0.00 0.00 0.00 4.02
4133 4393 3.779183 AGATCAAGCAAAGAGGAGATGGA 59.221 43.478 0.00 0.00 0.00 3.41
4165 4425 1.664649 CGCGTGTTCTGCAGAGGAA 60.665 57.895 17.43 3.69 0.00 3.36
4199 4461 2.508663 GTAGAGGTCGCCGTTGGC 60.509 66.667 0.00 0.00 46.75 4.52
4204 4466 1.315690 TATTGAGGTAGAGGTCGCCG 58.684 55.000 0.00 0.00 0.00 6.46
4205 4467 5.662674 AATATATTGAGGTAGAGGTCGCC 57.337 43.478 0.00 0.00 0.00 5.54
4244 4506 3.861886 GCAGCCACAACATTGCAGTAATT 60.862 43.478 0.00 0.00 36.59 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.