Multiple sequence alignment - TraesCS5D01G385200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G385200 chr5D 100.000 4857 0 0 1 4857 454308318 454313174 0.000000e+00 8970.0
1 TraesCS5D01G385200 chr5D 96.785 622 20 0 1 622 454268881 454269502 0.000000e+00 1038.0
2 TraesCS5D01G385200 chr5D 94.231 312 18 0 1 312 454265924 454266235 1.220000e-130 477.0
3 TraesCS5D01G385200 chr5D 93.528 309 19 1 1 309 454213893 454214200 4.430000e-125 459.0
4 TraesCS5D01G385200 chr5D 93.204 309 20 1 1 309 454290102 454290409 2.060000e-123 453.0
5 TraesCS5D01G385200 chr5D 98.864 176 2 0 618 793 454273279 454273454 1.010000e-81 315.0
6 TraesCS5D01G385200 chr5D 89.922 129 12 1 4277 4404 461071769 461071641 1.080000e-36 165.0
7 TraesCS5D01G385200 chr5D 89.062 128 14 0 4284 4411 3756061 3756188 5.030000e-35 159.0
8 TraesCS5D01G385200 chr5D 91.589 107 4 4 4564 4668 511939426 511939323 5.070000e-30 143.0
9 TraesCS5D01G385200 chr5B 88.359 3084 174 76 733 3746 555950605 555953573 0.000000e+00 3535.0
10 TraesCS5D01G385200 chr5B 88.953 344 28 7 377 720 555942808 555943141 2.700000e-112 416.0
11 TraesCS5D01G385200 chr5B 92.118 203 14 2 3778 3979 555953649 555953850 7.960000e-73 285.0
12 TraesCS5D01G385200 chr5B 94.536 183 9 1 3978 4159 555953876 555954058 1.030000e-71 281.0
13 TraesCS5D01G385200 chr5B 93.293 164 9 1 4694 4857 556138902 556139063 1.750000e-59 241.0
14 TraesCS5D01G385200 chr5B 83.173 208 24 8 116 312 694316681 694316888 3.860000e-41 180.0
15 TraesCS5D01G385200 chr5B 93.478 92 6 0 4163 4254 555954504 555954595 2.360000e-28 137.0
16 TraesCS5D01G385200 chr5B 88.462 104 7 4 4567 4668 89688738 89688638 2.370000e-23 121.0
17 TraesCS5D01G385200 chr5B 97.674 43 1 0 4246 4288 555956516 555956558 1.870000e-09 75.0
18 TraesCS5D01G385200 chr5B 100.000 28 0 0 4536 4563 556138781 556138808 9.000000e-03 52.8
19 TraesCS5D01G385200 chr5A 85.945 3095 208 96 750 3707 573606170 573609174 0.000000e+00 3096.0
20 TraesCS5D01G385200 chr5A 87.059 340 33 6 2668 3000 365332665 365332330 1.650000e-99 374.0
21 TraesCS5D01G385200 chr5A 88.365 318 13 3 3978 4288 573609588 573609888 1.290000e-95 361.0
22 TraesCS5D01G385200 chr5A 91.279 172 4 3 4694 4857 573610153 573610321 1.760000e-54 224.0
23 TraesCS5D01G385200 chr5A 93.478 138 9 0 4401 4538 573609885 573610022 6.370000e-49 206.0
24 TraesCS5D01G385200 chr5A 93.578 109 7 0 3195 3303 365332327 365332219 3.890000e-36 163.0
25 TraesCS5D01G385200 chr5A 100.000 36 0 0 4657 4692 573610094 573610129 3.140000e-07 67.6
26 TraesCS5D01G385200 chr2B 87.798 672 52 13 2654 3303 569151691 569151028 0.000000e+00 760.0
27 TraesCS5D01G385200 chr2B 87.353 340 32 5 2668 3000 128375662 128375327 3.550000e-101 379.0
28 TraesCS5D01G385200 chr2B 90.355 197 19 0 1583 1779 154592773 154592969 4.820000e-65 259.0
29 TraesCS5D01G385200 chr2B 91.597 119 10 0 4285 4403 133018418 133018536 1.080000e-36 165.0
30 TraesCS5D01G385200 chr2B 93.578 109 7 0 3195 3303 128375324 128375216 3.890000e-36 163.0
31 TraesCS5D01G385200 chr7B 86.567 670 42 20 2324 2992 610507038 610506416 0.000000e+00 695.0
32 TraesCS5D01G385200 chr7B 91.406 256 19 3 375 628 728122462 728122716 1.000000e-91 348.0
33 TraesCS5D01G385200 chr7B 91.270 252 20 2 375 625 218525700 218525950 4.660000e-90 342.0
34 TraesCS5D01G385200 chr7B 92.373 118 9 0 4285 4402 589467159 589467042 8.360000e-38 169.0
35 TraesCS5D01G385200 chrUn 87.395 357 33 6 2651 3000 409768678 409769029 2.720000e-107 399.0
36 TraesCS5D01G385200 chrUn 92.174 115 9 0 3189 3303 409769026 409769140 3.890000e-36 163.0
37 TraesCS5D01G385200 chr3B 87.395 357 33 6 2651 3000 733423603 733423954 2.720000e-107 399.0
38 TraesCS5D01G385200 chr3B 82.805 442 30 19 2324 2763 438117200 438117597 2.150000e-93 353.0
39 TraesCS5D01G385200 chr3B 92.174 115 9 0 3189 3303 733423951 733424065 3.890000e-36 163.0
40 TraesCS5D01G385200 chr4B 84.127 441 26 20 2324 2763 338361333 338361730 2.120000e-103 387.0
41 TraesCS5D01G385200 chr4B 88.380 284 27 6 346 624 549147101 549146819 2.170000e-88 337.0
42 TraesCS5D01G385200 chr4B 79.751 321 40 16 11 311 144092895 144092580 4.930000e-50 209.0
43 TraesCS5D01G385200 chr4B 87.500 88 8 1 4564 4651 477147866 477147950 1.110000e-16 99.0
44 TraesCS5D01G385200 chr6B 87.353 340 32 5 2668 3000 678121891 678122226 3.550000e-101 379.0
45 TraesCS5D01G385200 chr6B 90.945 254 21 2 375 627 412155179 412154927 1.670000e-89 340.0
46 TraesCS5D01G385200 chr6B 90.980 255 20 3 375 628 632529400 632529148 1.670000e-89 340.0
47 TraesCS5D01G385200 chr6B 92.174 115 9 0 3189 3303 678122223 678122337 3.890000e-36 163.0
48 TraesCS5D01G385200 chr1B 87.059 340 32 7 2668 3000 439123903 439123569 1.650000e-99 374.0
49 TraesCS5D01G385200 chr1B 93.578 109 7 0 3195 3303 439123566 439123458 3.890000e-36 163.0
50 TraesCS5D01G385200 chr1A 87.059 340 33 5 2668 3000 543483944 543483609 1.650000e-99 374.0
51 TraesCS5D01G385200 chr1A 93.578 109 7 0 3195 3303 543483606 543483498 3.890000e-36 163.0
52 TraesCS5D01G385200 chr7D 91.968 249 19 1 375 623 141345390 141345637 1.000000e-91 348.0
53 TraesCS5D01G385200 chr7D 93.220 118 8 0 4285 4402 626357543 626357426 1.800000e-39 174.0
54 TraesCS5D01G385200 chr2A 91.304 253 19 3 374 624 7915517 7915768 4.660000e-90 342.0
55 TraesCS5D01G385200 chr2D 86.752 234 4 8 2530 2763 11376215 11376421 8.130000e-58 235.0
56 TraesCS5D01G385200 chr4A 84.762 210 21 10 10 215 438248202 438248404 2.960000e-47 200.0
57 TraesCS5D01G385200 chr4A 87.006 177 19 4 138 312 34751850 34751676 3.840000e-46 196.0
58 TraesCS5D01G385200 chr6D 87.006 177 19 4 138 312 108158068 108158242 3.840000e-46 196.0
59 TraesCS5D01G385200 chr6D 85.333 150 12 4 11 150 430248503 430248652 3.920000e-31 147.0
60 TraesCS5D01G385200 chr6A 85.083 181 19 7 135 312 425248092 425247917 1.390000e-40 178.0
61 TraesCS5D01G385200 chr6A 91.667 120 10 0 4285 4404 272995015 272994896 3.010000e-37 167.0
62 TraesCS5D01G385200 chr4D 91.803 122 10 0 4281 4402 55352437 55352558 2.320000e-38 171.0
63 TraesCS5D01G385200 chr4D 91.667 120 10 0 4285 4404 367720659 367720540 3.010000e-37 167.0
64 TraesCS5D01G385200 chr4D 90.909 121 11 0 4285 4405 27156537 27156417 3.890000e-36 163.0
65 TraesCS5D01G385200 chr3D 84.713 157 23 1 4048 4204 456007364 456007209 6.510000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G385200 chr5D 454308318 454313174 4856 False 8970.00 8970 100.000000 1 4857 1 chr5D.!!$F4 4856
1 TraesCS5D01G385200 chr5D 454265924 454273454 7530 False 610.00 1038 96.626667 1 793 3 chr5D.!!$F5 792
2 TraesCS5D01G385200 chr5B 555950605 555956558 5953 False 862.60 3535 93.233000 733 4288 5 chr5B.!!$F3 3555
3 TraesCS5D01G385200 chr5A 573606170 573610321 4151 False 790.92 3096 91.813400 750 4857 5 chr5A.!!$F1 4107
4 TraesCS5D01G385200 chr2B 569151028 569151691 663 True 760.00 760 87.798000 2654 3303 1 chr2B.!!$R1 649
5 TraesCS5D01G385200 chr7B 610506416 610507038 622 True 695.00 695 86.567000 2324 2992 1 chr7B.!!$R2 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 7634 0.179000 GGAGCACGTGGAATCCAGAT 59.821 55.0 18.88 0.00 32.34 2.90 F
1132 7930 0.243907 TCTTCTTCTCGTTGGAGGCG 59.756 55.0 0.00 0.00 40.85 5.52 F
1851 8675 0.403271 ACAAATCTGGTCAGCTGCCT 59.597 50.0 22.36 5.47 0.00 4.75 F
2878 9773 0.167470 CTTCAGGCAACATGCTGACG 59.833 55.0 0.00 0.00 44.28 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 8532 0.099791 CGAAGAAGGAGACGGAGCTC 59.900 60.0 4.71 4.71 0.00 4.09 R
1969 8807 0.176680 ATGATGAGACACTCACCGCC 59.823 55.0 3.54 0.00 43.63 6.13 R
3673 10605 0.109458 CCACACACATCTGCATGCAC 60.109 55.0 18.46 0.00 32.57 4.57 R
4384 13889 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 3132 0.739813 CGGGTTCGTCCTTGATCCAC 60.740 60.000 0.00 0.00 36.25 4.02
232 3190 2.278596 CACCGATGGCCTCGTACG 60.279 66.667 18.94 9.53 46.18 3.67
306 3264 0.400670 AGGGCTCCTAACATCCCTCC 60.401 60.000 0.00 0.00 45.63 4.30
357 3315 1.441311 GGCTTGTGTGGTTGGTTGG 59.559 57.895 0.00 0.00 0.00 3.77
377 3335 2.504585 GGTTAGAGGGACTTTGGTAGGG 59.495 54.545 0.00 0.00 41.55 3.53
394 3352 1.147817 AGGGTTCAAATCCTGGTGCTT 59.852 47.619 0.00 0.00 38.36 3.91
395 3353 1.273327 GGGTTCAAATCCTGGTGCTTG 59.727 52.381 0.00 0.00 0.00 4.01
430 3388 6.781138 TGAATTTATTTCAGGATTTCCGACG 58.219 36.000 0.00 0.00 39.44 5.12
440 3398 0.732571 ATTTCCGACGATGCGCATTT 59.267 45.000 26.12 14.97 0.00 2.32
480 3438 0.678684 TCGATGACGAGGTGCCTACA 60.679 55.000 0.00 0.00 43.81 2.74
489 3447 0.603569 AGGTGCCTACAGTGACTTCG 59.396 55.000 0.00 0.00 0.00 3.79
509 3467 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
528 3486 0.320421 CCGGCTCAGTTTTTCGGAGA 60.320 55.000 0.00 0.00 42.94 3.71
533 3491 2.485814 GCTCAGTTTTTCGGAGATGCTT 59.514 45.455 0.00 0.00 40.01 3.91
555 3513 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
568 3526 1.011968 GCGTGTGTGCGTTCATAGGA 61.012 55.000 0.00 0.00 0.00 2.94
573 3531 2.036604 TGTGTGCGTTCATAGGAGTGAA 59.963 45.455 0.00 0.00 35.84 3.18
587 3545 0.721154 AGTGAATGTATGCGCGTGTG 59.279 50.000 13.61 0.00 0.00 3.82
591 3549 2.933260 TGAATGTATGCGCGTGTGTATT 59.067 40.909 13.61 7.23 0.00 1.89
793 7537 3.561143 AGAGGAAGATGCAGATACGAGT 58.439 45.455 0.00 0.00 0.00 4.18
796 7540 3.254657 AGGAAGATGCAGATACGAGTAGC 59.745 47.826 0.00 0.00 0.00 3.58
828 7574 0.317479 GATACACGCTATTCCCGGCT 59.683 55.000 0.00 0.00 0.00 5.52
846 7592 3.695606 GACAGCTGCCGGACCAGA 61.696 66.667 15.27 0.00 34.77 3.86
856 7602 2.496817 GGACCAGACTAGCGCCTG 59.503 66.667 2.29 3.73 0.00 4.85
883 7629 1.810030 GGTCGGAGCACGTGGAATC 60.810 63.158 18.88 0.00 44.69 2.52
884 7630 1.810030 GTCGGAGCACGTGGAATCC 60.810 63.158 18.88 8.30 44.69 3.01
886 7632 1.811266 CGGAGCACGTGGAATCCAG 60.811 63.158 18.88 0.00 37.93 3.86
888 7634 0.179000 GGAGCACGTGGAATCCAGAT 59.821 55.000 18.88 0.00 32.34 2.90
890 7636 2.158957 GGAGCACGTGGAATCCAGATAA 60.159 50.000 18.88 0.00 32.34 1.75
891 7637 3.531538 GAGCACGTGGAATCCAGATAAA 58.468 45.455 18.88 0.00 32.34 1.40
892 7638 3.270877 AGCACGTGGAATCCAGATAAAC 58.729 45.455 18.88 0.00 32.34 2.01
894 7640 3.438781 GCACGTGGAATCCAGATAAACAA 59.561 43.478 18.88 0.00 32.34 2.83
895 7641 4.083003 GCACGTGGAATCCAGATAAACAAA 60.083 41.667 18.88 0.00 32.34 2.83
896 7642 5.393027 GCACGTGGAATCCAGATAAACAAAT 60.393 40.000 18.88 0.00 32.34 2.32
897 7643 6.183360 GCACGTGGAATCCAGATAAACAAATA 60.183 38.462 18.88 0.00 32.34 1.40
898 7644 7.627513 GCACGTGGAATCCAGATAAACAAATAA 60.628 37.037 18.88 0.00 32.34 1.40
900 7646 8.405531 ACGTGGAATCCAGATAAACAAATAATG 58.594 33.333 0.27 0.00 32.34 1.90
901 7647 7.862372 CGTGGAATCCAGATAAACAAATAATGG 59.138 37.037 0.27 0.00 32.34 3.16
902 7648 8.912988 GTGGAATCCAGATAAACAAATAATGGA 58.087 33.333 0.27 0.00 39.52 3.41
903 7649 9.486123 TGGAATCCAGATAAACAAATAATGGAA 57.514 29.630 0.00 0.00 38.74 3.53
955 7701 4.154347 CCGGCCAGCCTCTGTCTC 62.154 72.222 2.24 0.00 0.00 3.36
956 7702 4.154347 CGGCCAGCCTCTGTCTCC 62.154 72.222 2.24 0.00 0.00 3.71
962 7708 1.042559 CAGCCTCTGTCTCCTCTCCC 61.043 65.000 0.00 0.00 0.00 4.30
965 7711 1.589399 CCTCTGTCTCCTCTCCCCCT 61.589 65.000 0.00 0.00 0.00 4.79
969 7715 1.786441 CTGTCTCCTCTCCCCCTCTAT 59.214 57.143 0.00 0.00 0.00 1.98
974 7720 5.433712 TGTCTCCTCTCCCCCTCTATATATC 59.566 48.000 0.00 0.00 0.00 1.63
1007 7777 7.274468 GTCTCACACTAGCATATCGGATAATTG 59.726 40.741 1.16 0.00 0.00 2.32
1012 7782 3.525537 AGCATATCGGATAATTGGCTCG 58.474 45.455 1.16 0.00 0.00 5.03
1018 7788 1.569479 GGATAATTGGCTCGCCTCGC 61.569 60.000 9.65 0.00 36.94 5.03
1026 7796 4.544689 CTCGCCTCGCCTCGACTG 62.545 72.222 0.00 0.00 0.00 3.51
1028 7798 4.838486 CGCCTCGCCTCGACTGAC 62.838 72.222 0.00 0.00 0.00 3.51
1029 7799 3.749064 GCCTCGCCTCGACTGACA 61.749 66.667 0.00 0.00 0.00 3.58
1031 7801 2.202544 CTCGCCTCGACTGACAGC 60.203 66.667 1.25 0.00 0.00 4.40
1032 7802 2.982744 CTCGCCTCGACTGACAGCA 61.983 63.158 1.25 0.00 0.00 4.41
1082 7874 2.966732 TTTACAGGGGAGCAGCGGG 61.967 63.158 0.00 0.00 0.00 6.13
1105 7897 1.057636 CAGCAAACATTCAAGCAGCG 58.942 50.000 0.00 0.00 0.00 5.18
1122 7920 1.061485 GCGGACACGTTCTTCTTCTC 58.939 55.000 0.00 0.00 43.45 2.87
1132 7930 0.243907 TCTTCTTCTCGTTGGAGGCG 59.756 55.000 0.00 0.00 40.85 5.52
1133 7931 1.355066 CTTCTTCTCGTTGGAGGCGC 61.355 60.000 0.00 0.00 40.85 6.53
1139 7941 4.124351 CGTTGGAGGCGCGAGGTA 62.124 66.667 12.10 0.00 0.00 3.08
1142 7944 3.659089 TTGGAGGCGCGAGGTAAGC 62.659 63.158 12.10 0.00 0.00 3.09
1190 7992 2.774439 TTCTTGCCGTTTCTTCTTGC 57.226 45.000 0.00 0.00 0.00 4.01
1197 7999 2.413371 GCCGTTTCTTCTTGCTTAGCTG 60.413 50.000 5.60 0.00 0.00 4.24
1304 8112 1.340017 ACAATGGGGGTCATGTTCTCG 60.340 52.381 0.00 0.00 35.99 4.04
1310 8118 1.296715 GGTCATGTTCTCGTGCCCT 59.703 57.895 0.00 0.00 0.00 5.19
1313 8121 1.376424 CATGTTCTCGTGCCCTGCT 60.376 57.895 0.00 0.00 0.00 4.24
1415 8223 0.817229 GGAAGCTGCTCATACAGGGC 60.817 60.000 1.00 0.00 38.16 5.19
1724 8532 4.735132 TTCGCGCTCCTCAACCGG 62.735 66.667 5.56 0.00 0.00 5.28
1820 8633 3.126343 CGGCCAAGGTAGTACAACAAATC 59.874 47.826 2.24 0.00 0.00 2.17
1844 8668 3.189080 CGCATCTCAAACAAATCTGGTCA 59.811 43.478 0.00 0.00 0.00 4.02
1845 8669 4.670992 CGCATCTCAAACAAATCTGGTCAG 60.671 45.833 0.00 0.00 0.00 3.51
1846 8670 4.730657 CATCTCAAACAAATCTGGTCAGC 58.269 43.478 0.00 0.00 0.00 4.26
1847 8671 4.090761 TCTCAAACAAATCTGGTCAGCT 57.909 40.909 0.00 0.00 0.00 4.24
1848 8672 3.817084 TCTCAAACAAATCTGGTCAGCTG 59.183 43.478 7.63 7.63 0.00 4.24
1849 8673 2.294233 TCAAACAAATCTGGTCAGCTGC 59.706 45.455 9.47 4.04 0.00 5.25
1851 8675 0.403271 ACAAATCTGGTCAGCTGCCT 59.597 50.000 22.36 5.47 0.00 4.75
1853 8677 2.040278 ACAAATCTGGTCAGCTGCCTTA 59.960 45.455 22.36 13.58 0.00 2.69
1854 8678 3.285484 CAAATCTGGTCAGCTGCCTTAT 58.715 45.455 22.36 14.82 0.00 1.73
1855 8679 3.659183 AATCTGGTCAGCTGCCTTATT 57.341 42.857 22.36 18.33 0.00 1.40
1863 8687 4.754114 GGTCAGCTGCCTTATTATCTGAAG 59.246 45.833 9.47 0.00 33.11 3.02
1877 8702 0.535102 CTGAAGTCGGCAAACTGGGT 60.535 55.000 0.00 0.00 0.00 4.51
1879 8704 1.141254 TGAAGTCGGCAAACTGGGTTA 59.859 47.619 0.00 0.00 0.00 2.85
1918 8756 1.547901 GGTCTTCAGGTTGGAAAGGGG 60.548 57.143 0.00 0.00 0.00 4.79
1933 8771 0.625683 AGGGGCTGTCCAAGGATGAT 60.626 55.000 0.00 0.00 37.22 2.45
1986 8827 0.179124 GAGGCGGTGAGTGTCTCATC 60.179 60.000 2.80 1.59 42.73 2.92
1987 8828 0.900182 AGGCGGTGAGTGTCTCATCA 60.900 55.000 10.06 0.00 41.28 3.07
1991 8832 2.744202 GCGGTGAGTGTCTCATCATTTT 59.256 45.455 10.06 0.00 41.28 1.82
2014 8855 4.702831 TCTCCATATGCTGCGATTTGTTA 58.297 39.130 0.00 0.00 0.00 2.41
2020 8861 4.519540 ATGCTGCGATTTGTTAAGGTTT 57.480 36.364 0.00 0.00 0.00 3.27
2028 8869 6.913673 TGCGATTTGTTAAGGTTTTTACTGAC 59.086 34.615 0.00 0.00 0.00 3.51
2032 8873 9.590088 GATTTGTTAAGGTTTTTACTGACGTAG 57.410 33.333 0.00 0.00 0.00 3.51
2060 8901 7.325694 AGTGCTAGTATGTTTATTTACCACGT 58.674 34.615 0.00 0.00 0.00 4.49
2105 8955 6.953520 TCAAATTGTTAATGGAGATTGACCCT 59.046 34.615 0.00 0.00 28.99 4.34
2301 9170 3.679389 TGGAGAAGGCAAAGAGATCAAC 58.321 45.455 0.00 0.00 0.00 3.18
2324 9193 0.678048 GAAGGCAAGTGCTCCCGATT 60.678 55.000 2.85 0.00 41.70 3.34
2420 9290 1.725164 GTAGGAGTTGTAGCAACGCAC 59.275 52.381 15.28 4.83 0.00 5.34
2652 9530 3.254060 CACATACCATCGTATAGGCAGC 58.746 50.000 0.00 0.00 33.23 5.25
2763 9646 3.012518 TCAGCATTCTAGCTTTCTTGCC 58.987 45.455 0.00 0.00 43.70 4.52
2790 9673 0.177604 CTACTTCTGCTGCTGGGAGG 59.822 60.000 6.69 3.14 33.98 4.30
2860 9755 8.814038 ATCTGCTTTTACATCCAGTTTTATCT 57.186 30.769 0.00 0.00 0.00 1.98
2861 9756 8.635765 TCTGCTTTTACATCCAGTTTTATCTT 57.364 30.769 0.00 0.00 0.00 2.40
2862 9757 8.730680 TCTGCTTTTACATCCAGTTTTATCTTC 58.269 33.333 0.00 0.00 0.00 2.87
2878 9773 0.167470 CTTCAGGCAACATGCTGACG 59.833 55.000 0.00 0.00 44.28 4.35
2905 9801 1.340889 GAACTTCATTGTTGGCAGGCA 59.659 47.619 0.00 0.00 0.00 4.75
2994 9890 5.471116 TCAATGACAACTTGGTTGATCTCAG 59.529 40.000 15.89 3.38 45.28 3.35
3016 9912 5.882557 CAGTGATGTTAAGGTAAGCATCCTT 59.117 40.000 10.88 10.88 45.72 3.36
3028 9924 5.992217 GGTAAGCATCCTTCAATACGATTCT 59.008 40.000 0.00 0.00 32.47 2.40
3070 9966 1.582052 CCGTGTCGTGTCGATACATTG 59.418 52.381 13.02 0.00 45.61 2.82
3071 9967 2.247637 CGTGTCGTGTCGATACATTGT 58.752 47.619 13.02 0.00 45.61 2.71
3148 10056 2.131023 GAGGATGAGGAATTCTGGGGT 58.869 52.381 5.23 0.00 0.00 4.95
3268 10185 1.514443 GACGGAAGAACGCGAGGAG 60.514 63.158 15.93 0.00 37.37 3.69
3538 10467 3.056328 GCAAGGGGGTGCGAGAAC 61.056 66.667 0.00 0.00 34.21 3.01
3640 10569 2.902065 GCAGTTAAAGTGCAGCTACC 57.098 50.000 6.25 0.00 43.79 3.18
3641 10570 2.427506 GCAGTTAAAGTGCAGCTACCT 58.572 47.619 6.25 0.00 43.79 3.08
3643 10572 3.664107 CAGTTAAAGTGCAGCTACCTGA 58.336 45.455 0.00 0.00 41.77 3.86
3673 10605 4.491676 CCAATCAACTGGAAATGCTGAAG 58.508 43.478 0.00 0.00 38.96 3.02
3692 10624 0.109458 GTGCATGCAGATGTGTGTGG 60.109 55.000 23.41 0.00 31.50 4.17
3707 10639 6.079424 TGTGTGTGGTAGGAAAAATAAAGC 57.921 37.500 0.00 0.00 0.00 3.51
3728 10750 3.198068 CAACATACTGCCTGCGTAGATT 58.802 45.455 0.53 0.00 0.00 2.40
3742 10764 6.183360 CCTGCGTAGATTTAGGTACTGTAGTT 60.183 42.308 0.53 0.00 41.52 2.24
3764 10796 7.044181 AGTTTAGTCCGGATGATATGCATATG 58.956 38.462 23.76 8.78 37.34 1.78
3834 10934 5.233225 TGATGAGAACAGTGACTCAATGAC 58.767 41.667 21.15 6.85 44.47 3.06
3870 10970 2.378208 TGTTCCCCTCATGTTCCAATGA 59.622 45.455 0.00 0.00 35.31 2.57
3896 10996 9.507280 ACGCTTCAAAATTGTGATAGATTATTG 57.493 29.630 0.00 0.00 0.00 1.90
3982 11109 4.917906 ACAGAGAGTAGCTTTCCCATTT 57.082 40.909 0.00 0.00 0.00 2.32
3986 11113 5.707298 CAGAGAGTAGCTTTCCCATTTTGAA 59.293 40.000 0.00 0.00 0.00 2.69
3996 11124 7.391275 AGCTTTCCCATTTTGAAATTACATTGG 59.609 33.333 0.00 0.00 31.75 3.16
4088 11216 1.713078 AGCAAGGAGATTTTGGGTCCT 59.287 47.619 0.00 0.00 42.87 3.85
4148 11276 3.801594 GCAAAGTTGAAGAAATCGGCAAA 59.198 39.130 0.00 0.00 0.00 3.68
4206 11782 1.884235 AGTTTCTTCCTTCCACAGCG 58.116 50.000 0.00 0.00 0.00 5.18
4242 11818 2.026449 AGAAACAGAGCTCCATCCCAAG 60.026 50.000 10.93 0.00 0.00 3.61
4288 13793 7.114866 AGAAGTAAACCCATAGCTTCTACTC 57.885 40.000 0.00 0.00 42.54 2.59
4289 13794 5.873146 AGTAAACCCATAGCTTCTACTCC 57.127 43.478 0.00 0.00 0.00 3.85
4290 13795 4.654724 AGTAAACCCATAGCTTCTACTCCC 59.345 45.833 0.00 0.00 0.00 4.30
4291 13796 3.423058 AACCCATAGCTTCTACTCCCT 57.577 47.619 0.00 0.00 0.00 4.20
4292 13797 2.965562 ACCCATAGCTTCTACTCCCTC 58.034 52.381 0.00 0.00 0.00 4.30
4293 13798 2.252714 CCCATAGCTTCTACTCCCTCC 58.747 57.143 0.00 0.00 0.00 4.30
4294 13799 1.889829 CCATAGCTTCTACTCCCTCCG 59.110 57.143 0.00 0.00 0.00 4.63
4295 13800 2.588620 CATAGCTTCTACTCCCTCCGT 58.411 52.381 0.00 0.00 0.00 4.69
4296 13801 2.345124 TAGCTTCTACTCCCTCCGTC 57.655 55.000 0.00 0.00 0.00 4.79
4297 13802 0.396001 AGCTTCTACTCCCTCCGTCC 60.396 60.000 0.00 0.00 0.00 4.79
4298 13803 1.726533 GCTTCTACTCCCTCCGTCCG 61.727 65.000 0.00 0.00 0.00 4.79
4299 13804 0.107312 CTTCTACTCCCTCCGTCCGA 60.107 60.000 0.00 0.00 0.00 4.55
4300 13805 0.329261 TTCTACTCCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
4301 13806 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
4302 13807 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
4303 13808 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
4304 13809 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
4305 13810 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
4306 13811 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
4307 13812 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
4308 13813 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
4309 13814 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
4310 13815 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
4311 13816 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
4312 13817 0.110823 CGTCCGAAAAAGCTTGTCCG 60.111 55.000 0.00 0.00 0.00 4.79
4313 13818 1.223187 GTCCGAAAAAGCTTGTCCGA 58.777 50.000 0.00 0.00 0.00 4.55
4314 13819 1.600485 GTCCGAAAAAGCTTGTCCGAA 59.400 47.619 0.00 0.00 0.00 4.30
4315 13820 1.871039 TCCGAAAAAGCTTGTCCGAAG 59.129 47.619 0.00 0.00 0.00 3.79
4316 13821 1.663161 CCGAAAAAGCTTGTCCGAAGC 60.663 52.381 0.00 0.00 43.31 3.86
4322 13827 2.388347 GCTTGTCCGAAGCTCATCC 58.612 57.895 0.00 0.00 40.01 3.51
4323 13828 1.092345 GCTTGTCCGAAGCTCATCCC 61.092 60.000 0.00 0.00 40.01 3.85
4324 13829 0.539051 CTTGTCCGAAGCTCATCCCT 59.461 55.000 0.00 0.00 0.00 4.20
4325 13830 0.537188 TTGTCCGAAGCTCATCCCTC 59.463 55.000 0.00 0.00 0.00 4.30
4326 13831 0.614697 TGTCCGAAGCTCATCCCTCA 60.615 55.000 0.00 0.00 0.00 3.86
4327 13832 0.537188 GTCCGAAGCTCATCCCTCAA 59.463 55.000 0.00 0.00 0.00 3.02
4328 13833 1.066143 GTCCGAAGCTCATCCCTCAAA 60.066 52.381 0.00 0.00 0.00 2.69
4329 13834 1.839994 TCCGAAGCTCATCCCTCAAAT 59.160 47.619 0.00 0.00 0.00 2.32
4330 13835 1.945394 CCGAAGCTCATCCCTCAAATG 59.055 52.381 0.00 0.00 0.00 2.32
4331 13836 1.945394 CGAAGCTCATCCCTCAAATGG 59.055 52.381 0.00 0.00 0.00 3.16
4332 13837 2.420547 CGAAGCTCATCCCTCAAATGGA 60.421 50.000 0.00 0.00 36.05 3.41
4333 13838 3.746751 CGAAGCTCATCCCTCAAATGGAT 60.747 47.826 0.00 0.00 43.46 3.41
4339 13844 3.897657 ATCCCTCAAATGGATGCATCT 57.102 42.857 25.28 4.53 41.10 2.90
4341 13846 4.362470 TCCCTCAAATGGATGCATCTAG 57.638 45.455 25.28 8.89 0.00 2.43
4342 13847 2.818432 CCCTCAAATGGATGCATCTAGC 59.182 50.000 25.28 10.32 45.96 3.42
4355 13860 3.957468 GCATCTAGCATTAACTTGGTGC 58.043 45.455 0.00 0.00 41.14 5.01
4357 13862 4.816385 GCATCTAGCATTAACTTGGTGCTA 59.184 41.667 7.35 7.35 46.54 3.49
4363 13868 5.989477 AGCATTAACTTGGTGCTAGATACA 58.011 37.500 0.00 0.00 46.54 2.29
4364 13869 6.595682 AGCATTAACTTGGTGCTAGATACAT 58.404 36.000 0.00 0.00 46.54 2.29
4365 13870 7.056635 AGCATTAACTTGGTGCTAGATACATT 58.943 34.615 0.00 0.00 46.54 2.71
4366 13871 7.227512 AGCATTAACTTGGTGCTAGATACATTC 59.772 37.037 0.00 0.00 46.54 2.67
4367 13872 7.012327 GCATTAACTTGGTGCTAGATACATTCA 59.988 37.037 0.00 0.00 36.02 2.57
4368 13873 9.060347 CATTAACTTGGTGCTAGATACATTCAT 57.940 33.333 0.00 0.00 0.00 2.57
4369 13874 9.632638 ATTAACTTGGTGCTAGATACATTCATT 57.367 29.630 0.00 0.00 0.00 2.57
4370 13875 7.944729 AACTTGGTGCTAGATACATTCATTT 57.055 32.000 0.00 0.00 0.00 2.32
4372 13877 9.461312 AACTTGGTGCTAGATACATTCATTTAA 57.539 29.630 0.00 0.00 0.00 1.52
4373 13878 9.113838 ACTTGGTGCTAGATACATTCATTTAAG 57.886 33.333 0.00 0.00 0.00 1.85
4374 13879 8.450578 TTGGTGCTAGATACATTCATTTAAGG 57.549 34.615 0.00 0.00 0.00 2.69
4375 13880 7.801104 TGGTGCTAGATACATTCATTTAAGGA 58.199 34.615 0.00 0.00 0.00 3.36
4376 13881 8.271458 TGGTGCTAGATACATTCATTTAAGGAA 58.729 33.333 0.00 0.00 0.00 3.36
4377 13882 8.560374 GGTGCTAGATACATTCATTTAAGGAAC 58.440 37.037 0.00 0.00 0.00 3.62
4378 13883 9.109393 GTGCTAGATACATTCATTTAAGGAACA 57.891 33.333 0.00 0.00 0.00 3.18
4379 13884 9.679661 TGCTAGATACATTCATTTAAGGAACAA 57.320 29.630 0.00 0.00 0.00 2.83
4389 13894 8.810652 TTCATTTAAGGAACAATCTTTTTCGG 57.189 30.769 0.00 0.00 0.00 4.30
4390 13895 8.172352 TCATTTAAGGAACAATCTTTTTCGGA 57.828 30.769 0.00 0.00 0.00 4.55
4391 13896 8.079809 TCATTTAAGGAACAATCTTTTTCGGAC 58.920 33.333 0.00 0.00 0.00 4.79
4392 13897 4.483476 AAGGAACAATCTTTTTCGGACG 57.517 40.909 0.00 0.00 0.00 4.79
4393 13898 2.812011 AGGAACAATCTTTTTCGGACGG 59.188 45.455 0.00 0.00 0.00 4.79
4394 13899 2.809696 GGAACAATCTTTTTCGGACGGA 59.190 45.455 0.00 0.00 0.00 4.69
4395 13900 3.120304 GGAACAATCTTTTTCGGACGGAG 60.120 47.826 0.00 0.00 0.00 4.63
4396 13901 2.423577 ACAATCTTTTTCGGACGGAGG 58.576 47.619 0.00 0.00 0.00 4.30
4397 13902 1.737793 CAATCTTTTTCGGACGGAGGG 59.262 52.381 0.00 0.00 0.00 4.30
4398 13903 1.272807 ATCTTTTTCGGACGGAGGGA 58.727 50.000 0.00 0.00 0.00 4.20
4399 13904 0.606604 TCTTTTTCGGACGGAGGGAG 59.393 55.000 0.00 0.00 0.00 4.30
4400 13905 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
4401 13906 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
4402 13907 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
4444 13949 1.696832 GAGGTCGCCGCTTGAATGAC 61.697 60.000 0.00 0.00 0.00 3.06
4445 13950 1.741770 GGTCGCCGCTTGAATGACT 60.742 57.895 0.00 0.00 0.00 3.41
4491 13996 3.943671 TGAGGAACACTCCAAAGGAAA 57.056 42.857 0.00 0.00 46.01 3.13
4495 14000 4.207955 AGGAACACTCCAAAGGAAACTTC 58.792 43.478 0.00 0.00 46.36 3.01
4498 14003 5.278512 GGAACACTCCAAAGGAAACTTCATC 60.279 44.000 0.00 0.00 44.28 2.92
4505 14010 0.332972 AGGAAACTTCATCCCCTGCC 59.667 55.000 0.00 0.00 37.44 4.85
4527 14032 3.930848 CGTAGAAGGATTAAAGGTTGCGT 59.069 43.478 0.00 0.00 0.00 5.24
4542 14059 0.601576 TGCGTCAACGTATGCTGGTT 60.602 50.000 4.29 0.00 42.22 3.67
4558 14075 0.970427 GGTTGTAAGGTGCATGGGGG 60.970 60.000 0.00 0.00 0.00 5.40
4562 14079 1.711375 TGTAAGGTGCATGGGGGTTTA 59.289 47.619 0.00 0.00 0.00 2.01
4563 14080 2.097036 GTAAGGTGCATGGGGGTTTAC 58.903 52.381 0.00 0.00 0.00 2.01
4564 14081 0.610785 AAGGTGCATGGGGGTTTACG 60.611 55.000 0.00 0.00 0.00 3.18
4566 14083 0.609681 GGTGCATGGGGGTTTACGAA 60.610 55.000 0.00 0.00 0.00 3.85
4568 14085 1.201414 GTGCATGGGGGTTTACGAAAG 59.799 52.381 0.00 0.00 0.00 2.62
4589 14106 2.131972 TGTTGTACACACGACATGCTC 58.868 47.619 0.00 0.00 42.93 4.26
4590 14107 1.459592 GTTGTACACACGACATGCTCC 59.540 52.381 0.00 0.00 38.72 4.70
4592 14109 1.336795 TGTACACACGACATGCTCCTG 60.337 52.381 0.00 0.00 0.00 3.86
4593 14110 0.389817 TACACACGACATGCTCCTGC 60.390 55.000 0.00 0.00 40.20 4.85
4603 14120 2.161831 TGCTCCTGCACGATTTTCG 58.838 52.632 0.00 0.00 45.31 3.46
4604 14121 1.298157 TGCTCCTGCACGATTTTCGG 61.298 55.000 1.69 0.00 45.31 4.30
4605 14122 1.425428 CTCCTGCACGATTTTCGGC 59.575 57.895 1.69 3.16 45.59 5.54
4606 14123 1.982073 CTCCTGCACGATTTTCGGCC 61.982 60.000 0.00 0.00 45.59 6.13
4607 14124 2.098298 CTGCACGATTTTCGGCCG 59.902 61.111 22.12 22.12 45.59 6.13
4608 14125 2.357638 TGCACGATTTTCGGCCGA 60.358 55.556 27.28 27.28 45.59 5.54
4609 14126 1.705337 CTGCACGATTTTCGGCCGAT 61.705 55.000 31.56 15.37 45.59 4.18
4610 14127 1.297598 GCACGATTTTCGGCCGATG 60.298 57.895 31.56 23.62 45.59 3.84
4611 14128 1.297598 CACGATTTTCGGCCGATGC 60.298 57.895 31.56 16.98 45.59 3.91
4622 14139 1.952263 GCCGATGCCATTAGAAGCC 59.048 57.895 0.00 0.00 0.00 4.35
4623 14140 0.819259 GCCGATGCCATTAGAAGCCA 60.819 55.000 0.00 0.00 0.00 4.75
4624 14141 1.901591 CCGATGCCATTAGAAGCCAT 58.098 50.000 0.00 0.00 0.00 4.40
4625 14142 1.808945 CCGATGCCATTAGAAGCCATC 59.191 52.381 0.00 0.00 0.00 3.51
4626 14143 1.808945 CGATGCCATTAGAAGCCATCC 59.191 52.381 0.00 0.00 0.00 3.51
4627 14144 2.811504 CGATGCCATTAGAAGCCATCCA 60.812 50.000 0.00 0.00 0.00 3.41
4628 14145 2.353357 TGCCATTAGAAGCCATCCAG 57.647 50.000 0.00 0.00 0.00 3.86
4629 14146 1.845791 TGCCATTAGAAGCCATCCAGA 59.154 47.619 0.00 0.00 0.00 3.86
4630 14147 2.444388 TGCCATTAGAAGCCATCCAGAT 59.556 45.455 0.00 0.00 0.00 2.90
4631 14148 3.117398 TGCCATTAGAAGCCATCCAGATT 60.117 43.478 0.00 0.00 0.00 2.40
4632 14149 3.893813 GCCATTAGAAGCCATCCAGATTT 59.106 43.478 0.00 0.00 0.00 2.17
4633 14150 5.072741 GCCATTAGAAGCCATCCAGATTTA 58.927 41.667 0.00 0.00 0.00 1.40
4634 14151 5.536161 GCCATTAGAAGCCATCCAGATTTAA 59.464 40.000 0.00 0.00 0.00 1.52
4635 14152 6.040842 GCCATTAGAAGCCATCCAGATTTAAA 59.959 38.462 0.00 0.00 0.00 1.52
4636 14153 7.417797 GCCATTAGAAGCCATCCAGATTTAAAA 60.418 37.037 0.00 0.00 0.00 1.52
4637 14154 8.477256 CCATTAGAAGCCATCCAGATTTAAAAA 58.523 33.333 0.00 0.00 0.00 1.94
4708 14247 4.023291 GCATTGAAAAGGGGTCCAAGATA 58.977 43.478 0.00 0.00 0.00 1.98
4769 14308 7.851228 ACATTCCATAGAAGAGTGAATACACA 58.149 34.615 0.00 0.00 41.33 3.72
4770 14309 7.766278 ACATTCCATAGAAGAGTGAATACACAC 59.234 37.037 0.00 0.00 41.33 3.82
4771 14310 7.984050 CATTCCATAGAAGAGTGAATACACACT 59.016 37.037 0.00 0.00 46.51 3.55
4778 14317 1.803334 GTGAATACACACTTGCCGGA 58.197 50.000 5.05 0.00 45.32 5.14
4780 14319 2.747446 GTGAATACACACTTGCCGGATT 59.253 45.455 5.05 0.00 45.32 3.01
4781 14320 3.190535 GTGAATACACACTTGCCGGATTT 59.809 43.478 5.05 0.00 45.32 2.17
4782 14321 4.393680 GTGAATACACACTTGCCGGATTTA 59.606 41.667 5.05 0.00 45.32 1.40
4783 14322 4.393680 TGAATACACACTTGCCGGATTTAC 59.606 41.667 5.05 0.00 0.00 2.01
4784 14323 2.561478 ACACACTTGCCGGATTTACT 57.439 45.000 5.05 0.00 0.00 2.24
4800 14339 6.623549 CGGATTTACTTCTGAATGTTGTGCAT 60.624 38.462 0.00 0.00 40.03 3.96
4834 14381 8.651589 AGGTGAATGATAGACGAAGGATATAA 57.348 34.615 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 3132 2.099921 CACAGAAGGAGACGGTATCCAG 59.900 54.545 22.69 12.02 39.47 3.86
232 3190 4.066139 AGCCCATGGACTTGGCCC 62.066 66.667 15.22 0.00 46.55 5.80
306 3264 4.262207 CCTGTACATGTACATGCTAGGAGG 60.262 50.000 32.97 24.45 44.15 4.30
357 3315 3.179685 ACCCTACCAAAGTCCCTCTAAC 58.820 50.000 0.00 0.00 0.00 2.34
377 3335 1.340889 TGCAAGCACCAGGATTTGAAC 59.659 47.619 0.00 0.00 0.00 3.18
430 3388 0.947244 CCTCCCACTAAATGCGCATC 59.053 55.000 25.53 0.00 0.00 3.91
440 3398 1.553706 GGAAACGTCTCCTCCCACTA 58.446 55.000 0.00 0.00 32.21 2.74
480 3438 7.962964 TCATCTTGAAATTTACGAAGTCACT 57.037 32.000 0.00 0.00 43.93 3.41
489 3447 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
509 3467 0.320421 TCTCCGAAAAACTGAGCCGG 60.320 55.000 0.00 0.00 41.36 6.13
528 3486 2.979678 CACACCCTACCCCTATAAGCAT 59.020 50.000 0.00 0.00 0.00 3.79
533 3491 0.262580 ACGCACACCCTACCCCTATA 59.737 55.000 0.00 0.00 0.00 1.31
555 3513 3.262420 ACATTCACTCCTATGAACGCAC 58.738 45.455 0.00 0.00 41.29 5.34
568 3526 0.721154 CACACGCGCATACATTCACT 59.279 50.000 5.73 0.00 0.00 3.41
573 3531 2.475111 GCTAATACACACGCGCATACAT 59.525 45.455 5.73 0.00 0.00 2.29
676 7415 2.018515 TGCCGAAAGAACCGAAAAGTT 58.981 42.857 0.00 0.00 0.00 2.66
793 7537 2.264813 GTATCAAAACCAGCGACGCTA 58.735 47.619 24.00 5.20 36.40 4.26
796 7540 1.201769 CGTGTATCAAAACCAGCGACG 60.202 52.381 0.00 0.00 0.00 5.12
828 7574 4.007644 CTGGTCCGGCAGCTGTCA 62.008 66.667 20.11 0.00 0.00 3.58
839 7585 2.496817 CAGGCGCTAGTCTGGTCC 59.503 66.667 7.64 0.00 45.86 4.46
890 7636 7.099120 GCAGACCTCATTTTCCATTATTTGTT 58.901 34.615 0.00 0.00 0.00 2.83
891 7637 6.211184 TGCAGACCTCATTTTCCATTATTTGT 59.789 34.615 0.00 0.00 0.00 2.83
892 7638 6.532657 GTGCAGACCTCATTTTCCATTATTTG 59.467 38.462 0.00 0.00 0.00 2.32
894 7640 5.127682 GGTGCAGACCTCATTTTCCATTATT 59.872 40.000 0.00 0.00 39.47 1.40
895 7641 4.646492 GGTGCAGACCTCATTTTCCATTAT 59.354 41.667 0.00 0.00 39.47 1.28
896 7642 4.016444 GGTGCAGACCTCATTTTCCATTA 58.984 43.478 0.00 0.00 39.47 1.90
897 7643 2.827921 GGTGCAGACCTCATTTTCCATT 59.172 45.455 0.00 0.00 39.47 3.16
898 7644 2.450476 GGTGCAGACCTCATTTTCCAT 58.550 47.619 0.00 0.00 39.47 3.41
900 7646 0.804989 CGGTGCAGACCTCATTTTCC 59.195 55.000 0.00 0.00 40.58 3.13
901 7647 0.169009 GCGGTGCAGACCTCATTTTC 59.831 55.000 0.00 0.00 40.58 2.29
902 7648 1.244019 GGCGGTGCAGACCTCATTTT 61.244 55.000 0.00 0.00 40.58 1.82
903 7649 1.675641 GGCGGTGCAGACCTCATTT 60.676 57.895 0.00 0.00 40.58 2.32
904 7650 2.045926 GGCGGTGCAGACCTCATT 60.046 61.111 0.00 0.00 40.58 2.57
905 7651 3.321648 TGGCGGTGCAGACCTCAT 61.322 61.111 0.00 0.00 40.58 2.90
906 7652 4.314440 GTGGCGGTGCAGACCTCA 62.314 66.667 0.00 0.00 40.58 3.86
950 7696 1.928480 ATAGAGGGGGAGAGGAGACA 58.072 55.000 0.00 0.00 0.00 3.41
955 7701 3.492337 GCGATATATAGAGGGGGAGAGG 58.508 54.545 0.00 0.00 0.00 3.69
956 7702 3.492337 GGCGATATATAGAGGGGGAGAG 58.508 54.545 0.00 0.00 0.00 3.20
962 7708 3.695060 AGACAACGGCGATATATAGAGGG 59.305 47.826 16.62 0.00 0.00 4.30
965 7711 4.758165 TGTGAGACAACGGCGATATATAGA 59.242 41.667 16.62 0.00 0.00 1.98
969 7715 2.686405 AGTGTGAGACAACGGCGATATA 59.314 45.455 16.62 0.00 0.00 0.86
974 7720 1.344942 GCTAGTGTGAGACAACGGCG 61.345 60.000 4.80 4.80 0.00 6.46
1012 7782 3.691744 CTGTCAGTCGAGGCGAGGC 62.692 68.421 0.00 0.00 36.23 4.70
1018 7788 0.528017 TAGCTTGCTGTCAGTCGAGG 59.472 55.000 5.26 0.00 0.00 4.63
1021 7791 0.038251 TGGTAGCTTGCTGTCAGTCG 60.038 55.000 5.26 0.00 0.00 4.18
1022 7792 2.169832 TTGGTAGCTTGCTGTCAGTC 57.830 50.000 5.26 0.00 0.00 3.51
1023 7793 2.222027 GTTTGGTAGCTTGCTGTCAGT 58.778 47.619 5.26 0.00 0.00 3.41
1024 7794 1.537202 GGTTTGGTAGCTTGCTGTCAG 59.463 52.381 5.26 0.00 0.00 3.51
1025 7795 1.133945 TGGTTTGGTAGCTTGCTGTCA 60.134 47.619 5.26 0.92 0.00 3.58
1026 7796 1.266989 GTGGTTTGGTAGCTTGCTGTC 59.733 52.381 5.26 0.00 0.00 3.51
1027 7797 1.318576 GTGGTTTGGTAGCTTGCTGT 58.681 50.000 5.26 0.00 0.00 4.40
1028 7798 0.598065 GGTGGTTTGGTAGCTTGCTG 59.402 55.000 5.26 0.00 0.00 4.41
1029 7799 0.184933 TGGTGGTTTGGTAGCTTGCT 59.815 50.000 0.00 0.00 0.00 3.91
1031 7801 0.958822 GGTGGTGGTTTGGTAGCTTG 59.041 55.000 0.00 0.00 0.00 4.01
1032 7802 0.553819 TGGTGGTGGTTTGGTAGCTT 59.446 50.000 0.00 0.00 0.00 3.74
1082 7874 2.203401 TGCTTGAATGTTTGCTGTTGC 58.797 42.857 0.00 0.00 40.20 4.17
1105 7897 2.418983 ACGAGAAGAAGAACGTGTCC 57.581 50.000 0.00 0.00 37.58 4.02
1122 7920 3.636313 TTACCTCGCGCCTCCAACG 62.636 63.158 0.00 0.00 0.00 4.10
1139 7941 3.446516 GCAAAATCATGGAGAAGAGGCTT 59.553 43.478 0.00 0.00 0.00 4.35
1142 7944 3.181489 GCTGCAAAATCATGGAGAAGAGG 60.181 47.826 0.00 0.00 40.84 3.69
1143 7945 3.442625 TGCTGCAAAATCATGGAGAAGAG 59.557 43.478 0.00 0.00 40.84 2.85
1145 7947 3.861276 TGCTGCAAAATCATGGAGAAG 57.139 42.857 0.00 0.00 40.84 2.85
1190 7992 0.176680 ACCATCGGTGCTCAGCTAAG 59.823 55.000 0.00 0.00 32.98 2.18
1197 7999 1.718757 GATGCCAACCATCGGTGCTC 61.719 60.000 0.00 0.00 40.84 4.26
1232 8039 2.427095 ACTGGAAGAAACAGCACCAAAC 59.573 45.455 0.00 0.00 39.55 2.93
1304 8112 1.139654 TCATAGTCATCAGCAGGGCAC 59.860 52.381 0.00 0.00 0.00 5.01
1310 8118 1.878211 TGGGGTCATAGTCATCAGCA 58.122 50.000 0.00 0.00 0.00 4.41
1313 8121 2.974794 CTCCATGGGGTCATAGTCATCA 59.025 50.000 13.02 0.00 34.93 3.07
1415 8223 0.459934 CCCTCTTGAAGCTGAGCGAG 60.460 60.000 0.00 0.00 0.00 5.03
1613 8421 0.321671 TGTACACCTTCTGCAGCCTC 59.678 55.000 9.47 0.00 0.00 4.70
1724 8532 0.099791 CGAAGAAGGAGACGGAGCTC 59.900 60.000 4.71 4.71 0.00 4.09
1799 8607 4.332828 AGATTTGTTGTACTACCTTGGCC 58.667 43.478 0.00 0.00 0.00 5.36
1820 8633 3.438087 ACCAGATTTGTTTGAGATGCGAG 59.562 43.478 0.00 0.00 0.00 5.03
1844 8668 4.502259 CCGACTTCAGATAATAAGGCAGCT 60.502 45.833 0.00 0.00 29.50 4.24
1845 8669 3.743396 CCGACTTCAGATAATAAGGCAGC 59.257 47.826 0.00 0.00 29.50 5.25
1846 8670 3.743396 GCCGACTTCAGATAATAAGGCAG 59.257 47.826 0.00 0.00 41.46 4.85
1847 8671 3.728845 GCCGACTTCAGATAATAAGGCA 58.271 45.455 0.00 0.00 41.46 4.75
1848 8672 3.728845 TGCCGACTTCAGATAATAAGGC 58.271 45.455 0.00 0.00 42.11 4.35
1849 8673 5.817816 AGTTTGCCGACTTCAGATAATAAGG 59.182 40.000 0.00 0.00 0.00 2.69
1851 8675 5.584649 CCAGTTTGCCGACTTCAGATAATAA 59.415 40.000 0.00 0.00 0.00 1.40
1853 8677 3.941483 CCAGTTTGCCGACTTCAGATAAT 59.059 43.478 0.00 0.00 0.00 1.28
1854 8678 3.334691 CCAGTTTGCCGACTTCAGATAA 58.665 45.455 0.00 0.00 0.00 1.75
1855 8679 2.354704 CCCAGTTTGCCGACTTCAGATA 60.355 50.000 0.00 0.00 0.00 1.98
1863 8687 4.976224 ATATTTAACCCAGTTTGCCGAC 57.024 40.909 0.00 0.00 0.00 4.79
1879 8704 9.844257 TGAAGACCCAAATTTGACAAAATATTT 57.156 25.926 19.86 0.00 34.84 1.40
1918 8756 2.225467 GCCTTATCATCCTTGGACAGC 58.775 52.381 0.00 0.00 0.00 4.40
1933 8771 3.870606 GCGAGTTTCTGCGCCTTA 58.129 55.556 4.18 0.00 46.93 2.69
1969 8807 0.176680 ATGATGAGACACTCACCGCC 59.823 55.000 3.54 0.00 43.63 6.13
1986 8827 4.556942 TCGCAGCATATGGAGAAAAATG 57.443 40.909 4.56 0.00 0.00 2.32
1987 8828 5.779529 AATCGCAGCATATGGAGAAAAAT 57.220 34.783 4.56 0.00 0.00 1.82
1991 8832 3.544684 ACAAATCGCAGCATATGGAGAA 58.455 40.909 4.56 0.00 0.00 2.87
2014 8855 6.201615 GCACTAACTACGTCAGTAAAAACCTT 59.798 38.462 0.00 0.00 36.04 3.50
2020 8861 6.808008 ACTAGCACTAACTACGTCAGTAAA 57.192 37.500 0.00 0.00 36.04 2.01
2033 8874 9.304731 CGTGGTAAATAAACATACTAGCACTAA 57.695 33.333 7.78 0.00 38.31 2.24
2042 8883 8.823818 AGCTCATTACGTGGTAAATAAACATAC 58.176 33.333 0.00 0.00 31.56 2.39
2043 8884 8.822855 CAGCTCATTACGTGGTAAATAAACATA 58.177 33.333 0.00 0.00 31.56 2.29
2044 8885 7.551262 TCAGCTCATTACGTGGTAAATAAACAT 59.449 33.333 0.00 0.00 31.56 2.71
2045 8886 6.874664 TCAGCTCATTACGTGGTAAATAAACA 59.125 34.615 0.00 0.00 31.56 2.83
2046 8887 7.298507 TCAGCTCATTACGTGGTAAATAAAC 57.701 36.000 0.00 0.00 31.56 2.01
2060 8901 5.675684 TGAGTACCAACATCAGCTCATTA 57.324 39.130 0.00 0.00 0.00 1.90
2237 9093 3.755378 GGATCATAAGTGCACATCCCATC 59.245 47.826 21.04 13.60 0.00 3.51
2420 9290 3.548770 ACATTCTGTCAGCCACCATATG 58.451 45.455 0.00 0.00 0.00 1.78
2516 9394 1.921887 GACGTGTCGATTATTTGCCGA 59.078 47.619 0.00 0.00 0.00 5.54
2626 9504 5.128663 TGCCTATACGATGGTATGTGCATAT 59.871 40.000 16.60 0.31 39.72 1.78
2636 9514 0.681733 CTGGCTGCCTATACGATGGT 59.318 55.000 21.03 0.00 0.00 3.55
2652 9530 7.907389 TCTACAGTTGATTATATTAGGGCTGG 58.093 38.462 0.00 0.00 0.00 4.85
2763 9646 2.060980 AGCAGAAGTAGCTCCCCCG 61.061 63.158 0.00 0.00 38.01 5.73
2790 9673 2.407090 GTTCCATTTTCAGCAACCAGC 58.593 47.619 0.00 0.00 46.19 4.85
2860 9755 1.855213 GCGTCAGCATGTTGCCTGAA 61.855 55.000 4.41 0.00 46.52 3.02
2861 9756 2.327343 GCGTCAGCATGTTGCCTGA 61.327 57.895 4.41 0.53 46.52 3.86
2862 9757 2.177531 GCGTCAGCATGTTGCCTG 59.822 61.111 4.41 0.00 46.52 4.85
2878 9773 3.841643 CCAACAATGAAGTTCAGATGGC 58.158 45.455 19.79 0.00 0.00 4.40
2905 9801 1.133513 TGACCACTGTGAGGCCAAATT 60.134 47.619 9.86 0.00 0.00 1.82
2994 9890 5.880332 TGAAGGATGCTTACCTTAACATCAC 59.120 40.000 0.00 0.00 46.14 3.06
3016 9912 9.820229 GTGTAATTTTTGTCAGAATCGTATTGA 57.180 29.630 0.00 0.00 0.00 2.57
3028 9924 5.107259 CGGAGATGTCGTGTAATTTTTGTCA 60.107 40.000 0.00 0.00 0.00 3.58
3056 9952 4.436847 GTGCTACTACAATGTATCGACACG 59.563 45.833 0.00 0.00 38.76 4.49
3070 9966 5.413833 TGTAGTAAGACCACAGTGCTACTAC 59.586 44.000 20.53 20.53 40.14 2.73
3071 9967 5.563592 TGTAGTAAGACCACAGTGCTACTA 58.436 41.667 12.34 9.23 0.00 1.82
3148 10056 1.683917 GAAGCGATCCTCTTGAGGCTA 59.316 52.381 11.61 0.00 36.12 3.93
3253 10170 2.509561 GGCTCCTCGCGTTCTTCC 60.510 66.667 5.77 0.00 40.44 3.46
3257 10174 2.811317 CACTGGCTCCTCGCGTTC 60.811 66.667 5.77 0.00 40.44 3.95
3521 10450 3.056328 GTTCTCGCACCCCCTTGC 61.056 66.667 0.00 0.00 39.28 4.01
3538 10467 4.813526 CTCGGCGTGGACGTCTCG 62.814 72.222 16.46 19.88 42.59 4.04
3565 10494 3.965539 ATGCTGCAGAGGTGACCGC 62.966 63.158 20.43 0.00 0.00 5.68
3571 10500 1.298993 CAGTCCATGCTGCAGAGGT 59.701 57.895 20.43 0.00 0.00 3.85
3627 10556 1.528129 GCTTCAGGTAGCTGCACTTT 58.472 50.000 17.20 0.00 38.15 2.66
3628 10557 0.671781 CGCTTCAGGTAGCTGCACTT 60.672 55.000 17.20 0.00 39.03 3.16
3631 10560 1.079819 GACGCTTCAGGTAGCTGCA 60.080 57.895 17.20 5.50 39.03 4.41
3632 10561 1.811679 GGACGCTTCAGGTAGCTGC 60.812 63.158 17.20 4.87 39.03 5.25
3633 10562 1.153549 GGGACGCTTCAGGTAGCTG 60.154 63.158 15.93 15.93 39.03 4.24
3634 10563 2.359967 GGGGACGCTTCAGGTAGCT 61.360 63.158 0.00 0.00 39.03 3.32
3635 10564 2.180159 TTGGGGACGCTTCAGGTAGC 62.180 60.000 0.00 0.00 37.80 3.58
3636 10565 0.541863 ATTGGGGACGCTTCAGGTAG 59.458 55.000 0.00 0.00 0.00 3.18
3637 10566 0.539986 GATTGGGGACGCTTCAGGTA 59.460 55.000 0.00 0.00 0.00 3.08
3639 10568 0.322456 TTGATTGGGGACGCTTCAGG 60.322 55.000 0.00 0.00 0.00 3.86
3640 10569 0.804989 GTTGATTGGGGACGCTTCAG 59.195 55.000 0.00 0.00 0.00 3.02
3641 10570 0.400213 AGTTGATTGGGGACGCTTCA 59.600 50.000 0.00 0.00 0.00 3.02
3643 10572 0.609131 CCAGTTGATTGGGGACGCTT 60.609 55.000 0.00 0.00 34.46 4.68
3673 10605 0.109458 CCACACACATCTGCATGCAC 60.109 55.000 18.46 0.00 32.57 4.57
3692 10624 7.488150 GGCAGTATGTTGCTTTATTTTTCCTAC 59.512 37.037 3.70 0.00 43.57 3.18
3707 10639 2.293677 TCTACGCAGGCAGTATGTTG 57.706 50.000 0.00 0.00 39.31 3.33
3728 10750 5.815581 TCCGGACTAAACTACAGTACCTAA 58.184 41.667 0.00 0.00 0.00 2.69
3742 10764 5.359756 GCATATGCATATCATCCGGACTAA 58.640 41.667 22.84 0.00 41.59 2.24
3764 10796 6.449635 TCATATAGGTCAACCAAACAATGC 57.550 37.500 1.33 0.00 38.89 3.56
3834 10934 6.096705 TGAGGGGAACACATATGCTTATTTTG 59.903 38.462 1.58 0.00 0.00 2.44
3870 10970 9.507280 CAATAATCTATCACAATTTTGAAGCGT 57.493 29.630 0.00 0.00 0.00 5.07
3937 11037 9.251440 TGTACACTGTCTAGGATGTTAACTTAT 57.749 33.333 7.22 0.00 0.00 1.73
3949 11049 4.573201 GCTACTCTCTGTACACTGTCTAGG 59.427 50.000 0.00 0.00 0.00 3.02
3951 11051 5.423704 AGCTACTCTCTGTACACTGTCTA 57.576 43.478 0.00 0.00 0.00 2.59
3953 11053 5.379732 AAAGCTACTCTCTGTACACTGTC 57.620 43.478 0.00 0.00 0.00 3.51
3961 11061 4.917906 AAATGGGAAAGCTACTCTCTGT 57.082 40.909 0.00 0.00 0.00 3.41
3982 11109 6.424509 CAGCAAAGCTTCCAATGTAATTTCAA 59.575 34.615 0.00 0.00 36.40 2.69
3986 11113 4.248058 GCAGCAAAGCTTCCAATGTAATT 58.752 39.130 0.00 0.00 36.40 1.40
3996 11124 3.441572 TCTTTCCTATGCAGCAAAGCTTC 59.558 43.478 0.00 0.00 36.40 3.86
4088 11216 4.956700 CCTACAAGGTCTCTCACATTCCTA 59.043 45.833 0.00 0.00 0.00 2.94
4159 11287 2.155197 AACCCAGGGCATTGGAGGAC 62.155 60.000 4.91 0.00 40.87 3.85
4206 11782 6.436843 TCTGTTTCTTTCAGAAAGGTCAAC 57.563 37.500 20.70 19.09 44.07 3.18
4242 11818 3.056328 GGTTCGGCTGTCAAGGCC 61.056 66.667 0.00 0.00 46.12 5.19
4288 13793 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
4289 13794 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
4290 13795 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
4291 13796 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
4292 13797 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
4293 13798 0.110823 CGGACAAGCTTTTTCGGACG 60.111 55.000 5.34 0.00 0.00 4.79
4294 13799 1.223187 TCGGACAAGCTTTTTCGGAC 58.777 50.000 13.16 0.00 0.00 4.79
4295 13800 1.871039 CTTCGGACAAGCTTTTTCGGA 59.129 47.619 13.16 11.24 0.00 4.55
4296 13801 1.663161 GCTTCGGACAAGCTTTTTCGG 60.663 52.381 13.16 9.25 40.01 4.30
4297 13802 1.674908 GCTTCGGACAAGCTTTTTCG 58.325 50.000 6.98 6.98 40.01 3.46
4304 13809 1.092345 GGGATGAGCTTCGGACAAGC 61.092 60.000 0.00 0.00 43.31 4.01
4305 13810 0.539051 AGGGATGAGCTTCGGACAAG 59.461 55.000 0.00 0.00 0.00 3.16
4306 13811 0.537188 GAGGGATGAGCTTCGGACAA 59.463 55.000 0.00 0.00 0.00 3.18
4307 13812 0.614697 TGAGGGATGAGCTTCGGACA 60.615 55.000 0.00 0.00 0.00 4.02
4308 13813 0.537188 TTGAGGGATGAGCTTCGGAC 59.463 55.000 0.00 0.00 0.00 4.79
4309 13814 1.275666 TTTGAGGGATGAGCTTCGGA 58.724 50.000 0.00 0.00 0.00 4.55
4310 13815 1.945394 CATTTGAGGGATGAGCTTCGG 59.055 52.381 0.00 0.00 0.00 4.30
4311 13816 1.945394 CCATTTGAGGGATGAGCTTCG 59.055 52.381 0.00 0.00 0.00 3.79
4312 13817 3.287867 TCCATTTGAGGGATGAGCTTC 57.712 47.619 0.00 0.00 0.00 3.86
4313 13818 3.967467 ATCCATTTGAGGGATGAGCTT 57.033 42.857 0.00 0.00 43.44 3.74
4319 13824 3.897657 AGATGCATCCATTTGAGGGAT 57.102 42.857 23.06 0.00 45.98 3.85
4320 13825 3.497405 GCTAGATGCATCCATTTGAGGGA 60.497 47.826 23.06 0.00 42.31 4.20
4321 13826 2.818432 GCTAGATGCATCCATTTGAGGG 59.182 50.000 23.06 0.00 42.31 4.30
4334 13839 3.957468 GCACCAAGTTAATGCTAGATGC 58.043 45.455 0.00 0.00 43.25 3.91
4341 13846 6.867662 ATGTATCTAGCACCAAGTTAATGC 57.132 37.500 2.91 2.91 39.74 3.56
4342 13847 8.437360 TGAATGTATCTAGCACCAAGTTAATG 57.563 34.615 0.00 0.00 0.00 1.90
4343 13848 9.632638 AATGAATGTATCTAGCACCAAGTTAAT 57.367 29.630 0.00 0.00 0.00 1.40
4344 13849 9.461312 AAATGAATGTATCTAGCACCAAGTTAA 57.539 29.630 0.00 0.00 0.00 2.01
4346 13851 7.944729 AAATGAATGTATCTAGCACCAAGTT 57.055 32.000 0.00 0.00 0.00 2.66
4347 13852 9.113838 CTTAAATGAATGTATCTAGCACCAAGT 57.886 33.333 0.00 0.00 0.00 3.16
4348 13853 8.562892 CCTTAAATGAATGTATCTAGCACCAAG 58.437 37.037 0.00 0.00 0.00 3.61
4349 13854 8.271458 TCCTTAAATGAATGTATCTAGCACCAA 58.729 33.333 0.00 0.00 0.00 3.67
4350 13855 7.801104 TCCTTAAATGAATGTATCTAGCACCA 58.199 34.615 0.00 0.00 0.00 4.17
4351 13856 8.560374 GTTCCTTAAATGAATGTATCTAGCACC 58.440 37.037 0.00 0.00 0.00 5.01
4352 13857 9.109393 TGTTCCTTAAATGAATGTATCTAGCAC 57.891 33.333 0.00 0.00 0.00 4.40
4353 13858 9.679661 TTGTTCCTTAAATGAATGTATCTAGCA 57.320 29.630 0.00 0.00 0.00 3.49
4363 13868 9.423061 CCGAAAAAGATTGTTCCTTAAATGAAT 57.577 29.630 0.00 0.00 0.00 2.57
4364 13869 8.634444 TCCGAAAAAGATTGTTCCTTAAATGAA 58.366 29.630 0.00 0.00 0.00 2.57
4365 13870 8.079809 GTCCGAAAAAGATTGTTCCTTAAATGA 58.920 33.333 0.00 0.00 0.00 2.57
4366 13871 7.060633 CGTCCGAAAAAGATTGTTCCTTAAATG 59.939 37.037 0.00 0.00 0.00 2.32
4367 13872 7.081976 CGTCCGAAAAAGATTGTTCCTTAAAT 58.918 34.615 0.00 0.00 0.00 1.40
4368 13873 6.432107 CGTCCGAAAAAGATTGTTCCTTAAA 58.568 36.000 0.00 0.00 0.00 1.52
4369 13874 5.049267 CCGTCCGAAAAAGATTGTTCCTTAA 60.049 40.000 0.00 0.00 0.00 1.85
4370 13875 4.453136 CCGTCCGAAAAAGATTGTTCCTTA 59.547 41.667 0.00 0.00 0.00 2.69
4371 13876 3.252458 CCGTCCGAAAAAGATTGTTCCTT 59.748 43.478 0.00 0.00 0.00 3.36
4372 13877 2.812011 CCGTCCGAAAAAGATTGTTCCT 59.188 45.455 0.00 0.00 0.00 3.36
4373 13878 2.809696 TCCGTCCGAAAAAGATTGTTCC 59.190 45.455 0.00 0.00 0.00 3.62
4374 13879 3.120304 CCTCCGTCCGAAAAAGATTGTTC 60.120 47.826 0.00 0.00 0.00 3.18
4375 13880 2.812011 CCTCCGTCCGAAAAAGATTGTT 59.188 45.455 0.00 0.00 0.00 2.83
4376 13881 2.423577 CCTCCGTCCGAAAAAGATTGT 58.576 47.619 0.00 0.00 0.00 2.71
4377 13882 1.737793 CCCTCCGTCCGAAAAAGATTG 59.262 52.381 0.00 0.00 0.00 2.67
4378 13883 1.626825 TCCCTCCGTCCGAAAAAGATT 59.373 47.619 0.00 0.00 0.00 2.40
4379 13884 1.207329 CTCCCTCCGTCCGAAAAAGAT 59.793 52.381 0.00 0.00 0.00 2.40
4380 13885 0.606604 CTCCCTCCGTCCGAAAAAGA 59.393 55.000 0.00 0.00 0.00 2.52
4381 13886 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
4382 13887 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
4383 13888 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4384 13889 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
4385 13890 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
4386 13891 0.679002 CAAGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
4387 13892 1.807886 CAAGTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
4388 13893 1.255667 TGCAAGTACTCCCTCCGTCC 61.256 60.000 0.00 0.00 0.00 4.79
4389 13894 0.606604 TTGCAAGTACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
4390 13895 1.053424 TTTGCAAGTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
4391 13896 1.804748 GTTTTGCAAGTACTCCCTCCG 59.195 52.381 0.00 0.00 0.00 4.63
4392 13897 2.814336 CAGTTTTGCAAGTACTCCCTCC 59.186 50.000 11.95 0.00 0.00 4.30
4393 13898 3.740115 TCAGTTTTGCAAGTACTCCCTC 58.260 45.455 11.95 0.00 0.00 4.30
4394 13899 3.857157 TCAGTTTTGCAAGTACTCCCT 57.143 42.857 11.95 0.00 0.00 4.20
4395 13900 4.911514 TTTCAGTTTTGCAAGTACTCCC 57.088 40.909 11.95 0.00 0.00 4.30
4396 13901 5.515270 GTGTTTTCAGTTTTGCAAGTACTCC 59.485 40.000 11.95 0.00 0.00 3.85
4397 13902 6.090129 TGTGTTTTCAGTTTTGCAAGTACTC 58.910 36.000 11.95 3.88 0.00 2.59
4398 13903 6.019779 TGTGTTTTCAGTTTTGCAAGTACT 57.980 33.333 9.71 9.71 0.00 2.73
4399 13904 6.885735 ATGTGTTTTCAGTTTTGCAAGTAC 57.114 33.333 0.00 2.32 0.00 2.73
4400 13905 6.252441 CGAATGTGTTTTCAGTTTTGCAAGTA 59.748 34.615 0.00 0.00 0.00 2.24
4401 13906 5.062058 CGAATGTGTTTTCAGTTTTGCAAGT 59.938 36.000 0.00 0.00 0.00 3.16
4402 13907 5.288232 TCGAATGTGTTTTCAGTTTTGCAAG 59.712 36.000 0.00 0.00 0.00 4.01
4471 13976 3.202151 AGTTTCCTTTGGAGTGTTCCTCA 59.798 43.478 0.00 0.00 44.36 3.86
4491 13996 0.325296 TCTACGGCAGGGGATGAAGT 60.325 55.000 0.00 0.00 0.00 3.01
4495 14000 1.048724 TCCTTCTACGGCAGGGGATG 61.049 60.000 0.00 0.00 0.00 3.51
4498 14003 1.420430 TAATCCTTCTACGGCAGGGG 58.580 55.000 0.00 0.00 0.00 4.79
4501 14006 4.138487 ACCTTTAATCCTTCTACGGCAG 57.862 45.455 0.00 0.00 0.00 4.85
4505 14010 3.930848 ACGCAACCTTTAATCCTTCTACG 59.069 43.478 0.00 0.00 0.00 3.51
4527 14032 3.244284 ACCTTACAACCAGCATACGTTGA 60.244 43.478 6.91 0.00 41.53 3.18
4542 14059 0.485099 AAACCCCCATGCACCTTACA 59.515 50.000 0.00 0.00 0.00 2.41
4569 14086 2.131972 GAGCATGTCGTGTGTACAACA 58.868 47.619 0.00 0.00 36.04 3.33
4570 14087 1.459592 GGAGCATGTCGTGTGTACAAC 59.540 52.381 0.00 0.00 0.00 3.32
4571 14088 1.343142 AGGAGCATGTCGTGTGTACAA 59.657 47.619 0.00 0.00 0.00 2.41
4572 14089 0.966179 AGGAGCATGTCGTGTGTACA 59.034 50.000 0.00 0.00 0.00 2.90
4573 14090 1.350193 CAGGAGCATGTCGTGTGTAC 58.650 55.000 0.00 0.00 36.48 2.90
4576 14093 3.171987 GCAGGAGCATGTCGTGTG 58.828 61.111 14.85 1.58 42.16 3.82
4586 14103 1.425428 CCGAAAATCGTGCAGGAGC 59.575 57.895 15.18 3.68 38.40 4.70
4589 14106 2.485122 GGCCGAAAATCGTGCAGG 59.515 61.111 0.00 0.00 38.40 4.85
4590 14107 1.705337 ATCGGCCGAAAATCGTGCAG 61.705 55.000 34.66 0.00 38.40 4.41
4592 14109 1.297598 CATCGGCCGAAAATCGTGC 60.298 57.895 34.66 2.43 38.40 5.34
4593 14110 1.297598 GCATCGGCCGAAAATCGTG 60.298 57.895 34.66 25.03 38.40 4.35
4594 14111 3.098555 GCATCGGCCGAAAATCGT 58.901 55.556 34.66 12.19 38.40 3.73
4604 14121 0.819259 TGGCTTCTAATGGCATCGGC 60.819 55.000 0.00 1.16 35.04 5.54
4605 14122 1.901591 ATGGCTTCTAATGGCATCGG 58.098 50.000 0.00 0.00 45.59 4.18
4609 14126 1.845791 TCTGGATGGCTTCTAATGGCA 59.154 47.619 0.00 0.00 43.90 4.92
4610 14127 2.645838 TCTGGATGGCTTCTAATGGC 57.354 50.000 0.07 0.00 0.00 4.40
4611 14128 7.587037 TTTAAATCTGGATGGCTTCTAATGG 57.413 36.000 0.07 0.00 0.00 3.16
4636 14153 7.390718 ACAGAAGCGTTAGATTACCTCATTTTT 59.609 33.333 0.00 0.00 0.00 1.94
4637 14154 6.879458 ACAGAAGCGTTAGATTACCTCATTTT 59.121 34.615 0.00 0.00 0.00 1.82
4638 14155 6.407202 ACAGAAGCGTTAGATTACCTCATTT 58.593 36.000 0.00 0.00 0.00 2.32
4639 14156 5.978814 ACAGAAGCGTTAGATTACCTCATT 58.021 37.500 0.00 0.00 0.00 2.57
4640 14157 5.599999 ACAGAAGCGTTAGATTACCTCAT 57.400 39.130 0.00 0.00 0.00 2.90
4641 14158 5.450137 GCTACAGAAGCGTTAGATTACCTCA 60.450 44.000 0.00 0.00 42.53 3.86
4642 14159 4.977347 GCTACAGAAGCGTTAGATTACCTC 59.023 45.833 0.00 0.00 42.53 3.85
4643 14160 4.934515 GCTACAGAAGCGTTAGATTACCT 58.065 43.478 0.00 0.00 42.53 3.08
4769 14308 3.695830 TCAGAAGTAAATCCGGCAAGT 57.304 42.857 0.00 0.00 0.00 3.16
4770 14309 4.396166 ACATTCAGAAGTAAATCCGGCAAG 59.604 41.667 0.00 0.00 0.00 4.01
4771 14310 4.331968 ACATTCAGAAGTAAATCCGGCAA 58.668 39.130 0.00 0.00 0.00 4.52
4772 14311 3.950397 ACATTCAGAAGTAAATCCGGCA 58.050 40.909 0.00 0.00 0.00 5.69
4773 14312 4.156008 ACAACATTCAGAAGTAAATCCGGC 59.844 41.667 0.00 0.00 0.00 6.13
4774 14313 5.631026 CACAACATTCAGAAGTAAATCCGG 58.369 41.667 0.00 0.00 0.00 5.14
4775 14314 5.088739 GCACAACATTCAGAAGTAAATCCG 58.911 41.667 0.00 0.00 0.00 4.18
4776 14315 6.012658 TGCACAACATTCAGAAGTAAATCC 57.987 37.500 0.00 0.00 0.00 3.01
4777 14316 6.034256 GCATGCACAACATTCAGAAGTAAATC 59.966 38.462 14.21 0.00 36.64 2.17
4778 14317 5.865552 GCATGCACAACATTCAGAAGTAAAT 59.134 36.000 14.21 0.00 36.64 1.40
4780 14319 4.277921 TGCATGCACAACATTCAGAAGTAA 59.722 37.500 18.46 0.00 36.64 2.24
4781 14320 3.819902 TGCATGCACAACATTCAGAAGTA 59.180 39.130 18.46 0.00 36.64 2.24
4782 14321 2.624364 TGCATGCACAACATTCAGAAGT 59.376 40.909 18.46 0.00 36.64 3.01
4783 14322 3.291809 TGCATGCACAACATTCAGAAG 57.708 42.857 18.46 0.00 36.64 2.85
4784 14323 3.318557 TCTTGCATGCACAACATTCAGAA 59.681 39.130 22.58 0.00 36.64 3.02
4800 14339 5.985530 CGTCTATCATTCACCTTATCTTGCA 59.014 40.000 0.00 0.00 0.00 4.08
4834 14381 4.530875 CTGATGCTTTGGATCCTAACCTT 58.469 43.478 14.23 1.36 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.