Multiple sequence alignment - TraesCS5D01G385000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G385000 chr5D 100.000 5907 0 0 1 5907 454168953 454174859 0.000000e+00 10909.0
1 TraesCS5D01G385000 chr5D 94.737 38 2 0 3724 3761 283712165 283712128 6.390000e-05 60.2
2 TraesCS5D01G385000 chr5B 93.962 5565 198 49 143 5634 555120236 555125735 0.000000e+00 8288.0
3 TraesCS5D01G385000 chr5B 96.479 142 4 1 1 141 555120037 555120178 3.560000e-57 233.0
4 TraesCS5D01G385000 chr5A 96.061 2945 89 11 1792 4720 573559565 573562498 0.000000e+00 4771.0
5 TraesCS5D01G385000 chr5A 95.340 1631 53 8 143 1758 573557945 573559567 0.000000e+00 2569.0
6 TraesCS5D01G385000 chr5A 85.111 994 64 35 4729 5686 573562618 573563563 0.000000e+00 939.0
7 TraesCS5D01G385000 chr5A 97.101 138 4 0 1 138 573557740 573557877 3.560000e-57 233.0
8 TraesCS5D01G385000 chr1D 99.375 160 1 0 5748 5907 433127624 433127783 2.080000e-74 291.0
9 TraesCS5D01G385000 chr6D 98.750 160 2 0 5748 5907 435940041 435939882 9.690000e-73 285.0
10 TraesCS5D01G385000 chr6D 86.164 159 12 1 3603 3761 449760385 449760237 4.740000e-36 163.0
11 TraesCS5D01G385000 chr2D 98.734 158 2 0 5750 5907 66145689 66145532 1.250000e-71 281.0
12 TraesCS5D01G385000 chr2D 98.101 158 3 0 5750 5907 586466059 586466216 5.830000e-70 276.0
13 TraesCS5D01G385000 chr2D 84.906 159 14 1 3603 3761 424368899 424368751 1.030000e-32 152.0
14 TraesCS5D01G385000 chr2D 84.277 159 15 5 3603 3761 416135745 416135893 4.770000e-31 147.0
15 TraesCS5D01G385000 chr2D 84.277 159 13 8 3603 3761 416180067 416179921 1.720000e-30 145.0
16 TraesCS5D01G385000 chr7B 95.062 162 8 0 5746 5907 521585865 521586026 7.600000e-64 255.0
17 TraesCS5D01G385000 chr6B 92.994 157 11 0 5751 5907 508163145 508162989 4.600000e-56 230.0
18 TraesCS5D01G385000 chr6B 100.000 28 0 0 50 77 308508273 308508300 1.100000e-02 52.8
19 TraesCS5D01G385000 chr2B 84.076 157 15 1 3605 3761 696276299 696276153 6.170000e-30 143.0
20 TraesCS5D01G385000 chr3A 90.816 98 9 0 3664 3761 201672135 201672038 1.340000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G385000 chr5D 454168953 454174859 5906 False 10909.0 10909 100.00000 1 5907 1 chr5D.!!$F1 5906
1 TraesCS5D01G385000 chr5B 555120037 555125735 5698 False 4260.5 8288 95.22050 1 5634 2 chr5B.!!$F1 5633
2 TraesCS5D01G385000 chr5A 573557740 573563563 5823 False 2128.0 4771 93.40325 1 5686 4 chr5A.!!$F1 5685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 827 3.490060 AACCAAAAAGGGGGCTATGAT 57.510 42.857 0.00 0.0 43.89 2.45 F
2262 2342 1.898574 CTGCCACAACCAGGGTGTC 60.899 63.158 7.36 0.0 34.46 3.67 F
2414 2496 0.322008 CTTGCCTTGGAGACTGACCC 60.322 60.000 0.00 0.0 0.00 4.46 F
3755 3839 0.171903 AGTTGATGCTGAATTGGCGC 59.828 50.000 0.00 0.0 0.00 6.53 F
4849 5068 1.075305 TTTGCTGGCTGCTCCATGA 59.925 52.632 17.45 0.0 45.50 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 2496 0.034186 TCAGGTAGGGCATGGCTTTG 60.034 55.000 19.78 7.21 0.00 2.77 R
3468 3550 1.902918 GCCACTTCACATGCCCACA 60.903 57.895 0.00 0.00 0.00 4.17 R
3850 3934 2.202864 GCCGCCTCTGCTTCTCTC 60.203 66.667 0.00 0.00 34.43 3.20 R
4888 5107 0.106819 ATCAAGACTGGGCCATCTGC 60.107 55.000 6.72 0.00 40.16 4.26 R
5821 6105 0.104672 TGTCTTCCCCTCCCACAGAA 60.105 55.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
533 603 4.178956 AGGGCCATTATTTCGTTGGTAT 57.821 40.909 6.18 0.00 32.90 2.73
543 613 5.789710 ATTTCGTTGGTATCAAAGTACCG 57.210 39.130 1.50 0.00 45.78 4.02
606 677 9.982291 TGTATTTTACAATGAGCGAAATAGAAC 57.018 29.630 0.00 0.00 35.38 3.01
614 685 3.678072 TGAGCGAAATAGAACGTCTTTGG 59.322 43.478 0.00 0.00 0.00 3.28
618 689 5.873164 AGCGAAATAGAACGTCTTTGGTATT 59.127 36.000 0.00 0.00 0.00 1.89
706 777 6.448202 TCCCCCATTGTTTGGTATATGAAAT 58.552 36.000 0.00 0.00 44.83 2.17
756 827 3.490060 AACCAAAAAGGGGGCTATGAT 57.510 42.857 0.00 0.00 43.89 2.45
817 888 7.458397 TGTTATATTTCGGGCAAGATATCCTT 58.542 34.615 0.00 0.00 34.91 3.36
952 1026 6.173339 TGTAATGAATTCAGGTCAGAAGGTC 58.827 40.000 14.54 0.00 0.00 3.85
1113 1187 8.672823 TGATATTGAAAGATGATGACTTCAGG 57.327 34.615 0.00 0.00 37.89 3.86
1168 1242 5.413969 AAAGGTTAGAACTGTTTACACGC 57.586 39.130 0.00 0.00 0.00 5.34
1246 1320 8.939201 TCTTCTTGCAAATCATGTTTTGTTTA 57.061 26.923 23.53 12.29 38.55 2.01
1304 1378 2.627221 TGCATGCCTTTTGTCTGCTAAA 59.373 40.909 16.68 0.00 34.02 1.85
1399 1473 2.418746 GCCATGAAGAAGAACCGAGCTA 60.419 50.000 0.00 0.00 0.00 3.32
1404 1478 2.217510 AGAAGAACCGAGCTACTCCA 57.782 50.000 0.00 0.00 0.00 3.86
1431 1505 3.431207 GGAATGATCACCCAATGGCAAAG 60.431 47.826 0.00 0.00 33.59 2.77
1602 1677 5.236478 ACAGTTATTACTTGTCACACAGTGC 59.764 40.000 0.00 0.00 30.20 4.40
1947 2027 3.617263 GTGTATGGGTTCATTGTCTCGAC 59.383 47.826 0.00 0.00 34.96 4.20
2203 2283 6.430007 ACCTCAAGATATCCTGCAATTTTCT 58.570 36.000 0.00 0.00 0.00 2.52
2208 2288 6.461110 AGATATCCTGCAATTTTCTGTTGG 57.539 37.500 0.00 0.00 0.00 3.77
2262 2342 1.898574 CTGCCACAACCAGGGTGTC 60.899 63.158 7.36 0.00 34.46 3.67
2411 2493 3.117888 AGTTTTCTTGCCTTGGAGACTGA 60.118 43.478 0.00 0.00 0.00 3.41
2414 2496 0.322008 CTTGCCTTGGAGACTGACCC 60.322 60.000 0.00 0.00 0.00 4.46
2553 2635 2.490115 GAGGAGAGACGTCACACAGATT 59.510 50.000 19.50 0.00 34.08 2.40
2562 2644 4.389374 ACGTCACACAGATTTCATTCCTT 58.611 39.130 0.00 0.00 0.00 3.36
2642 2724 2.741145 TCCAGTAGAGCTCCTCTTTCC 58.259 52.381 10.93 0.00 41.50 3.13
2764 2846 9.461312 AAATCTTGTAGGAACATATTGCACTTA 57.539 29.630 0.00 0.00 34.97 2.24
2983 3065 9.672673 AAGCTATTACAGTATTGATGTTTGAGT 57.327 29.630 0.00 0.00 32.02 3.41
3255 3337 4.121317 ACAAGAACAATGCCAAACATGTG 58.879 39.130 0.00 0.00 39.60 3.21
3468 3550 2.288640 GCTGCTTGGTTCTGCAAATTCT 60.289 45.455 0.00 0.00 38.81 2.40
3571 3655 7.916077 AGTATAGACTACAGGCCATTTTAGT 57.084 36.000 5.01 5.35 32.65 2.24
3755 3839 0.171903 AGTTGATGCTGAATTGGCGC 59.828 50.000 0.00 0.00 0.00 6.53
3859 3943 2.126307 GCAGCGACGAGAGAAGCA 60.126 61.111 0.00 0.00 38.88 3.91
3889 3973 4.189188 GCAGATGCCCAAGCTGCG 62.189 66.667 0.00 0.00 44.52 5.18
4006 4101 6.902341 TCTTTGAGATGTTGGAAATTTCTCG 58.098 36.000 17.42 0.00 38.67 4.04
4040 4135 8.801882 TTGGTTATACCTGGTTAGAAAGAATG 57.198 34.615 3.84 0.00 39.58 2.67
4151 4246 3.637184 TGCACTCACTCATGCATGT 57.363 47.368 25.43 5.20 46.63 3.21
4249 4344 4.335400 TGATATGAGCAAAGACGCCATA 57.665 40.909 0.00 0.00 32.95 2.74
4378 4475 9.964354 TGGAGGGATTAGTCATGAATAATATTG 57.036 33.333 24.14 0.00 32.50 1.90
4382 4479 8.897752 GGGATTAGTCATGAATAATATTGAGGC 58.102 37.037 24.14 12.33 32.50 4.70
4384 4481 9.453572 GATTAGTCATGAATAATATTGAGGCCA 57.546 33.333 24.14 0.00 32.50 5.36
4385 4482 9.986157 ATTAGTCATGAATAATATTGAGGCCAT 57.014 29.630 23.16 0.00 30.82 4.40
4461 4561 4.918810 AACTTGACCAGGTTTTGATGAC 57.081 40.909 0.00 0.00 0.00 3.06
4467 4567 5.441500 TGACCAGGTTTTGATGACTTTGTA 58.558 37.500 0.00 0.00 0.00 2.41
4473 4573 9.226606 CCAGGTTTTGATGACTTTGTACTATTA 57.773 33.333 0.00 0.00 0.00 0.98
4501 4601 8.958119 TTAGTCGAATAGTGATTGGCTATTTT 57.042 30.769 0.00 0.00 38.73 1.82
4552 4652 4.637276 TGCTCGAACTGTCAAGGATTTAA 58.363 39.130 0.00 0.00 0.00 1.52
4631 4733 4.931002 CCATAAAAACATGAAGCAAGTGGG 59.069 41.667 0.00 0.00 0.00 4.61
4674 4776 5.814705 TGTGCCTTTTGACCTTGTTTTTATG 59.185 36.000 0.00 0.00 0.00 1.90
4759 4972 4.039609 TCTTGACATCAAAGCTCACTGAGA 59.960 41.667 10.45 0.00 35.15 3.27
4762 4975 4.252073 GACATCAAAGCTCACTGAGATGT 58.748 43.478 10.45 9.89 46.02 3.06
4773 4992 5.982516 GCTCACTGAGATGTTAGGTGAATAG 59.017 44.000 10.45 0.00 36.65 1.73
4776 4995 8.768501 TCACTGAGATGTTAGGTGAATAGTAT 57.231 34.615 0.00 0.00 34.58 2.12
4848 5067 1.214589 GTTTGCTGGCTGCTCCATG 59.785 57.895 17.45 0.00 45.50 3.66
4849 5068 1.075305 TTTGCTGGCTGCTCCATGA 59.925 52.632 17.45 0.00 45.50 3.07
4878 5097 4.286808 TCTGACTCCCTTCATTCATGTTGA 59.713 41.667 0.00 0.00 0.00 3.18
4880 5099 5.573219 TGACTCCCTTCATTCATGTTGATT 58.427 37.500 0.00 0.00 0.00 2.57
4881 5100 6.012113 TGACTCCCTTCATTCATGTTGATTT 58.988 36.000 0.00 0.00 0.00 2.17
4882 5101 6.494491 TGACTCCCTTCATTCATGTTGATTTT 59.506 34.615 0.00 0.00 0.00 1.82
4883 5102 6.694447 ACTCCCTTCATTCATGTTGATTTTG 58.306 36.000 0.00 0.00 0.00 2.44
4884 5103 6.040209 TCCCTTCATTCATGTTGATTTTGG 57.960 37.500 0.00 0.00 0.00 3.28
4885 5104 5.543405 TCCCTTCATTCATGTTGATTTTGGT 59.457 36.000 0.00 0.00 0.00 3.67
4886 5105 5.640357 CCCTTCATTCATGTTGATTTTGGTG 59.360 40.000 0.00 0.00 0.00 4.17
4887 5106 5.121142 CCTTCATTCATGTTGATTTTGGTGC 59.879 40.000 0.00 0.00 0.00 5.01
4888 5107 4.236147 TCATTCATGTTGATTTTGGTGCG 58.764 39.130 0.00 0.00 0.00 5.34
4889 5108 2.063156 TCATGTTGATTTTGGTGCGC 57.937 45.000 0.00 0.00 0.00 6.09
4890 5109 1.339291 TCATGTTGATTTTGGTGCGCA 59.661 42.857 5.66 5.66 0.00 6.09
4891 5110 1.722464 CATGTTGATTTTGGTGCGCAG 59.278 47.619 12.22 0.00 0.00 5.18
4910 5129 0.394762 GATGGCCCAGTCTTGATGCA 60.395 55.000 0.00 0.00 0.00 3.96
4978 5203 1.139256 TGCCGTACCTCACACTTGAAA 59.861 47.619 0.00 0.00 0.00 2.69
5048 5276 6.867662 TCAAAAACAAAAGAAAACAGCCAA 57.132 29.167 0.00 0.00 0.00 4.52
5100 5332 2.380410 GCAATGCAGCAACAGCAGC 61.380 57.895 0.00 0.00 46.36 5.25
5145 5382 5.615544 GCATACCGTTTGTAGCATCATCATC 60.616 44.000 0.00 0.00 31.61 2.92
5146 5383 3.872696 ACCGTTTGTAGCATCATCATCA 58.127 40.909 0.00 0.00 0.00 3.07
5238 5493 2.104331 GACGGTCGATCATGGCGT 59.896 61.111 0.00 0.00 0.00 5.68
5271 5526 0.683973 GCCGATGGACCAGATGAGAT 59.316 55.000 0.00 0.00 0.00 2.75
5303 5558 4.090588 CTTTAGGTGGCCGGCGGA 62.091 66.667 33.44 6.69 0.00 5.54
5322 5577 1.000506 GACTCGTTTACACAGGCTGGA 59.999 52.381 20.34 3.30 0.00 3.86
5363 5618 2.503375 CCCCGTCGTCGTTTCTCG 60.503 66.667 0.71 0.00 41.41 4.04
5409 5670 1.064654 GTTCGTAGTGGTAGTAGGGCG 59.935 57.143 0.00 0.00 0.00 6.13
5442 5703 0.813184 GTGGTCTCGGACGGATAACA 59.187 55.000 0.00 0.00 32.65 2.41
5499 5764 0.312416 CGACGGTGGATCTCATCTCC 59.688 60.000 0.00 0.00 0.00 3.71
5525 5794 7.384932 CCTTTCTTTTGGTACCAAATGATTGTC 59.615 37.037 37.08 4.05 44.10 3.18
5539 5808 0.515564 ATTGTCTTGTTACCGTGCGC 59.484 50.000 0.00 0.00 0.00 6.09
5582 5861 0.908910 TTCCGGCTATGATGTGTGGT 59.091 50.000 0.00 0.00 0.00 4.16
5587 5866 2.100749 CGGCTATGATGTGTGGTGTAGA 59.899 50.000 0.00 0.00 0.00 2.59
5588 5867 3.458189 GGCTATGATGTGTGGTGTAGAC 58.542 50.000 0.00 0.00 0.00 2.59
5589 5868 3.116300 GCTATGATGTGTGGTGTAGACG 58.884 50.000 0.00 0.00 0.00 4.18
5590 5869 3.428999 GCTATGATGTGTGGTGTAGACGT 60.429 47.826 0.00 0.00 0.00 4.34
5591 5870 2.432206 TGATGTGTGGTGTAGACGTG 57.568 50.000 0.00 0.00 0.00 4.49
5592 5871 1.684450 TGATGTGTGGTGTAGACGTGT 59.316 47.619 0.00 0.00 0.00 4.49
5593 5872 2.885894 TGATGTGTGGTGTAGACGTGTA 59.114 45.455 0.00 0.00 0.00 2.90
5602 5881 2.421424 GTGTAGACGTGTAGTGTAGGGG 59.579 54.545 0.00 0.00 0.00 4.79
5634 5918 4.214980 AGCTCGAACACAATTTTGTCAG 57.785 40.909 0.00 0.00 39.91 3.51
5635 5919 3.003689 AGCTCGAACACAATTTTGTCAGG 59.996 43.478 0.00 0.00 39.91 3.86
5646 5930 1.533625 TTTGTCAGGGCTGGAATTCG 58.466 50.000 0.00 0.00 0.00 3.34
5660 5944 4.734134 TTCGCGGTGTCGAAAAGA 57.266 50.000 6.13 0.00 44.30 2.52
5661 5945 2.974845 TTCGCGGTGTCGAAAAGAA 58.025 47.368 6.13 0.00 44.30 2.52
5671 5955 1.871676 GTCGAAAAGAAAAGGGACGCT 59.128 47.619 0.00 0.00 0.00 5.07
5676 5960 4.201724 CGAAAAGAAAAGGGACGCTATGAG 60.202 45.833 0.00 0.00 0.00 2.90
5681 5965 2.279517 GGGACGCTATGAGCCACG 60.280 66.667 0.00 0.00 38.18 4.94
5686 5970 0.663688 ACGCTATGAGCCACGTCTAG 59.336 55.000 0.00 0.00 38.18 2.43
5687 5971 0.661780 CGCTATGAGCCACGTCTAGC 60.662 60.000 0.00 0.00 38.18 3.42
5688 5972 0.671251 GCTATGAGCCACGTCTAGCT 59.329 55.000 4.03 4.03 43.55 3.32
5689 5973 1.880675 GCTATGAGCCACGTCTAGCTA 59.119 52.381 4.36 0.00 40.11 3.32
5690 5974 2.095466 GCTATGAGCCACGTCTAGCTAG 60.095 54.545 15.01 15.01 40.11 3.42
5691 5975 1.323412 ATGAGCCACGTCTAGCTAGG 58.677 55.000 20.58 8.12 40.11 3.02
5692 5976 0.034380 TGAGCCACGTCTAGCTAGGT 60.034 55.000 20.58 8.78 40.11 3.08
5693 5977 0.664224 GAGCCACGTCTAGCTAGGTC 59.336 60.000 20.58 12.70 40.11 3.85
5694 5978 1.096386 AGCCACGTCTAGCTAGGTCG 61.096 60.000 25.65 25.65 37.64 4.79
5695 5979 1.355916 CCACGTCTAGCTAGGTCGC 59.644 63.158 26.53 13.79 0.00 5.19
5696 5980 1.011019 CACGTCTAGCTAGGTCGCG 60.011 63.158 26.53 22.65 34.40 5.87
5697 5981 1.449246 ACGTCTAGCTAGGTCGCGT 60.449 57.895 26.53 23.11 34.40 6.01
5698 5982 1.276250 CGTCTAGCTAGGTCGCGTC 59.724 63.158 20.58 0.00 34.40 5.19
5699 5983 1.276250 GTCTAGCTAGGTCGCGTCG 59.724 63.158 20.58 0.00 34.40 5.12
5700 5984 1.142531 TCTAGCTAGGTCGCGTCGA 59.857 57.895 20.58 0.00 34.40 4.20
5723 6007 3.625099 CGGGGTGGTCGGACTAAT 58.375 61.111 8.23 0.00 0.00 1.73
5724 6008 2.811307 CGGGGTGGTCGGACTAATA 58.189 57.895 8.23 0.00 0.00 0.98
5725 6009 0.386838 CGGGGTGGTCGGACTAATAC 59.613 60.000 8.23 2.99 0.00 1.89
5726 6010 0.386838 GGGGTGGTCGGACTAATACG 59.613 60.000 8.23 0.00 0.00 3.06
5727 6011 0.249197 GGGTGGTCGGACTAATACGC 60.249 60.000 8.23 7.24 29.42 4.42
5728 6012 0.249197 GGTGGTCGGACTAATACGCC 60.249 60.000 8.23 3.29 29.42 5.68
5729 6013 0.457035 GTGGTCGGACTAATACGCCA 59.543 55.000 8.23 0.00 36.41 5.69
5730 6014 1.135024 GTGGTCGGACTAATACGCCAA 60.135 52.381 8.23 0.00 39.20 4.52
5731 6015 1.549620 TGGTCGGACTAATACGCCAAA 59.450 47.619 8.23 0.00 36.01 3.28
5732 6016 2.028294 TGGTCGGACTAATACGCCAAAA 60.028 45.455 8.23 0.00 36.01 2.44
5733 6017 3.200483 GGTCGGACTAATACGCCAAAAT 58.800 45.455 8.23 0.00 31.04 1.82
5734 6018 3.624410 GGTCGGACTAATACGCCAAAATT 59.376 43.478 8.23 0.00 31.04 1.82
5735 6019 4.095334 GGTCGGACTAATACGCCAAAATTT 59.905 41.667 8.23 0.00 31.04 1.82
5736 6020 5.260900 GTCGGACTAATACGCCAAAATTTC 58.739 41.667 0.00 0.00 29.42 2.17
5737 6021 4.333372 TCGGACTAATACGCCAAAATTTCC 59.667 41.667 0.00 0.00 29.42 3.13
5738 6022 4.334481 CGGACTAATACGCCAAAATTTCCT 59.666 41.667 0.00 0.00 0.00 3.36
5739 6023 5.578776 GGACTAATACGCCAAAATTTCCTG 58.421 41.667 0.00 0.00 0.00 3.86
5740 6024 5.449999 GGACTAATACGCCAAAATTTCCTGG 60.450 44.000 4.75 4.75 35.67 4.45
5741 6025 5.258051 ACTAATACGCCAAAATTTCCTGGA 58.742 37.500 12.26 0.00 34.35 3.86
5742 6026 4.718940 AATACGCCAAAATTTCCTGGAG 57.281 40.909 12.26 11.16 38.37 3.86
5743 6027 0.603065 ACGCCAAAATTTCCTGGAGC 59.397 50.000 12.26 0.00 36.08 4.70
5744 6028 0.602562 CGCCAAAATTTCCTGGAGCA 59.397 50.000 12.26 0.00 34.35 4.26
5745 6029 1.403249 CGCCAAAATTTCCTGGAGCAG 60.403 52.381 12.26 0.00 34.35 4.24
5746 6030 1.673923 GCCAAAATTTCCTGGAGCAGC 60.674 52.381 12.26 0.00 34.35 5.25
5747 6031 1.619827 CCAAAATTTCCTGGAGCAGCA 59.380 47.619 3.16 0.00 34.35 4.41
5748 6032 2.037511 CCAAAATTTCCTGGAGCAGCAA 59.962 45.455 3.16 0.00 34.35 3.91
5749 6033 3.307199 CCAAAATTTCCTGGAGCAGCAAT 60.307 43.478 3.16 0.00 34.35 3.56
5750 6034 4.320870 CAAAATTTCCTGGAGCAGCAATT 58.679 39.130 0.00 0.00 29.80 2.32
5751 6035 3.604875 AATTTCCTGGAGCAGCAATTG 57.395 42.857 0.00 0.00 28.48 2.32
5752 6036 1.259609 TTTCCTGGAGCAGCAATTGG 58.740 50.000 7.72 0.00 0.00 3.16
5753 6037 0.612732 TTCCTGGAGCAGCAATTGGG 60.613 55.000 7.72 0.00 0.00 4.12
5754 6038 1.000521 CCTGGAGCAGCAATTGGGA 60.001 57.895 7.72 0.00 0.00 4.37
5755 6039 0.396695 CCTGGAGCAGCAATTGGGAT 60.397 55.000 7.72 0.00 0.00 3.85
5756 6040 0.744874 CTGGAGCAGCAATTGGGATG 59.255 55.000 7.72 0.00 0.00 3.51
5757 6041 0.332293 TGGAGCAGCAATTGGGATGA 59.668 50.000 7.72 0.00 0.00 2.92
5758 6042 1.030457 GGAGCAGCAATTGGGATGAG 58.970 55.000 7.72 0.00 0.00 2.90
5759 6043 1.030457 GAGCAGCAATTGGGATGAGG 58.970 55.000 7.72 0.00 0.00 3.86
5760 6044 0.627451 AGCAGCAATTGGGATGAGGA 59.373 50.000 7.72 0.00 0.00 3.71
5761 6045 1.006281 AGCAGCAATTGGGATGAGGAA 59.994 47.619 7.72 0.00 0.00 3.36
5762 6046 1.135721 GCAGCAATTGGGATGAGGAAC 59.864 52.381 7.72 0.00 0.00 3.62
5764 6048 3.889815 CAGCAATTGGGATGAGGAACTA 58.110 45.455 7.72 0.00 41.55 2.24
5765 6049 4.272489 CAGCAATTGGGATGAGGAACTAA 58.728 43.478 7.72 0.00 41.55 2.24
5766 6050 4.891756 CAGCAATTGGGATGAGGAACTAAT 59.108 41.667 7.72 0.00 41.55 1.73
5767 6051 6.064060 CAGCAATTGGGATGAGGAACTAATA 58.936 40.000 7.72 0.00 41.55 0.98
5768 6052 6.016777 CAGCAATTGGGATGAGGAACTAATAC 60.017 42.308 7.72 0.00 41.55 1.89
5769 6053 5.049405 GCAATTGGGATGAGGAACTAATACG 60.049 44.000 7.72 0.00 41.55 3.06
5770 6054 3.746045 TGGGATGAGGAACTAATACGC 57.254 47.619 0.00 0.00 41.55 4.42
5771 6055 2.367567 TGGGATGAGGAACTAATACGCC 59.632 50.000 0.00 0.00 41.55 5.68
5772 6056 2.367567 GGGATGAGGAACTAATACGCCA 59.632 50.000 0.00 0.00 41.55 5.69
5773 6057 3.181458 GGGATGAGGAACTAATACGCCAA 60.181 47.826 0.00 0.00 41.55 4.52
5774 6058 4.448210 GGATGAGGAACTAATACGCCAAA 58.552 43.478 0.00 0.00 41.55 3.28
5775 6059 4.879545 GGATGAGGAACTAATACGCCAAAA 59.120 41.667 0.00 0.00 41.55 2.44
5776 6060 5.531287 GGATGAGGAACTAATACGCCAAAAT 59.469 40.000 0.00 0.00 41.55 1.82
5777 6061 6.039382 GGATGAGGAACTAATACGCCAAAATT 59.961 38.462 0.00 0.00 41.55 1.82
5778 6062 6.827586 TGAGGAACTAATACGCCAAAATTT 57.172 33.333 0.00 0.00 41.55 1.82
5779 6063 6.848451 TGAGGAACTAATACGCCAAAATTTC 58.152 36.000 0.00 0.00 41.55 2.17
5780 6064 6.127842 TGAGGAACTAATACGCCAAAATTTCC 60.128 38.462 0.00 0.00 41.55 3.13
5781 6065 5.949952 AGGAACTAATACGCCAAAATTTCCT 59.050 36.000 0.00 0.00 36.02 3.36
5782 6066 7.114095 AGGAACTAATACGCCAAAATTTCCTA 58.886 34.615 0.00 0.00 36.02 2.94
5783 6067 7.066645 AGGAACTAATACGCCAAAATTTCCTAC 59.933 37.037 0.00 0.00 36.02 3.18
5784 6068 7.148205 GGAACTAATACGCCAAAATTTCCTACA 60.148 37.037 0.00 0.00 0.00 2.74
5785 6069 7.875327 ACTAATACGCCAAAATTTCCTACAT 57.125 32.000 0.00 0.00 0.00 2.29
5786 6070 7.927048 ACTAATACGCCAAAATTTCCTACATC 58.073 34.615 0.00 0.00 0.00 3.06
5787 6071 5.767816 ATACGCCAAAATTTCCTACATCC 57.232 39.130 0.00 0.00 0.00 3.51
5788 6072 3.697166 ACGCCAAAATTTCCTACATCCT 58.303 40.909 0.00 0.00 0.00 3.24
5789 6073 3.443681 ACGCCAAAATTTCCTACATCCTG 59.556 43.478 0.00 0.00 0.00 3.86
5790 6074 3.694072 CGCCAAAATTTCCTACATCCTGA 59.306 43.478 0.00 0.00 0.00 3.86
5791 6075 4.438744 CGCCAAAATTTCCTACATCCTGAC 60.439 45.833 0.00 0.00 0.00 3.51
5792 6076 4.438744 GCCAAAATTTCCTACATCCTGACG 60.439 45.833 0.00 0.00 0.00 4.35
5793 6077 4.438744 CCAAAATTTCCTACATCCTGACGC 60.439 45.833 0.00 0.00 0.00 5.19
5794 6078 3.627395 AATTTCCTACATCCTGACGCA 57.373 42.857 0.00 0.00 0.00 5.24
5795 6079 2.672961 TTTCCTACATCCTGACGCAG 57.327 50.000 0.52 0.52 0.00 5.18
5796 6080 1.847328 TTCCTACATCCTGACGCAGA 58.153 50.000 8.20 0.00 32.44 4.26
5797 6081 1.393603 TCCTACATCCTGACGCAGAG 58.606 55.000 8.20 1.85 32.44 3.35
5798 6082 0.387202 CCTACATCCTGACGCAGAGG 59.613 60.000 8.20 3.59 32.44 3.69
5799 6083 0.249238 CTACATCCTGACGCAGAGGC 60.249 60.000 8.20 0.00 32.44 4.70
5800 6084 0.970427 TACATCCTGACGCAGAGGCA 60.970 55.000 8.20 0.00 41.24 4.75
5801 6085 1.078918 CATCCTGACGCAGAGGCAA 60.079 57.895 8.20 0.00 37.47 4.52
5802 6086 0.463295 CATCCTGACGCAGAGGCAAT 60.463 55.000 8.20 0.00 37.47 3.56
5803 6087 0.179062 ATCCTGACGCAGAGGCAATC 60.179 55.000 8.20 0.00 37.47 2.67
5804 6088 1.220206 CCTGACGCAGAGGCAATCT 59.780 57.895 8.20 0.00 37.47 2.40
5805 6089 0.392193 CCTGACGCAGAGGCAATCTT 60.392 55.000 8.20 0.00 37.47 2.40
5806 6090 0.725686 CTGACGCAGAGGCAATCTTG 59.274 55.000 1.18 0.00 37.47 3.02
5807 6091 0.321346 TGACGCAGAGGCAATCTTGA 59.679 50.000 0.00 0.00 41.24 3.02
5808 6092 1.270785 TGACGCAGAGGCAATCTTGAA 60.271 47.619 0.00 0.00 41.24 2.69
5809 6093 2.012673 GACGCAGAGGCAATCTTGAAT 58.987 47.619 0.00 0.00 41.24 2.57
5810 6094 3.198068 GACGCAGAGGCAATCTTGAATA 58.802 45.455 0.00 0.00 41.24 1.75
5811 6095 3.812053 GACGCAGAGGCAATCTTGAATAT 59.188 43.478 0.00 0.00 41.24 1.28
5812 6096 4.202441 ACGCAGAGGCAATCTTGAATATT 58.798 39.130 0.00 0.00 41.24 1.28
5813 6097 4.274459 ACGCAGAGGCAATCTTGAATATTC 59.726 41.667 8.60 8.60 41.24 1.75
5814 6098 4.320057 CGCAGAGGCAATCTTGAATATTCC 60.320 45.833 12.90 0.00 41.24 3.01
5815 6099 4.022503 GCAGAGGCAATCTTGAATATTCCC 60.023 45.833 12.90 4.95 40.72 3.97
5816 6100 4.522022 CAGAGGCAATCTTGAATATTCCCC 59.478 45.833 12.90 2.63 35.47 4.81
5817 6101 4.418190 AGAGGCAATCTTGAATATTCCCCT 59.582 41.667 12.90 6.83 32.99 4.79
5818 6102 4.734266 AGGCAATCTTGAATATTCCCCTC 58.266 43.478 12.90 0.00 0.00 4.30
5819 6103 4.168675 AGGCAATCTTGAATATTCCCCTCA 59.831 41.667 12.90 0.00 0.00 3.86
5820 6104 4.895297 GGCAATCTTGAATATTCCCCTCAA 59.105 41.667 12.90 0.07 0.00 3.02
5821 6105 5.541484 GGCAATCTTGAATATTCCCCTCAAT 59.459 40.000 12.90 0.00 0.00 2.57
5822 6106 6.042437 GGCAATCTTGAATATTCCCCTCAATT 59.958 38.462 12.90 2.36 0.00 2.32
5823 6107 7.150640 GCAATCTTGAATATTCCCCTCAATTC 58.849 38.462 12.90 0.00 0.00 2.17
5824 6108 7.015001 GCAATCTTGAATATTCCCCTCAATTCT 59.985 37.037 12.90 0.00 31.16 2.40
5825 6109 8.358148 CAATCTTGAATATTCCCCTCAATTCTG 58.642 37.037 12.90 0.00 31.16 3.02
5826 6110 6.973642 TCTTGAATATTCCCCTCAATTCTGT 58.026 36.000 12.90 0.00 31.16 3.41
5827 6111 6.830324 TCTTGAATATTCCCCTCAATTCTGTG 59.170 38.462 12.90 0.00 31.16 3.66
5828 6112 5.448654 TGAATATTCCCCTCAATTCTGTGG 58.551 41.667 12.90 0.00 36.19 4.17
5833 6117 3.890527 CCTCAATTCTGTGGGAGGG 57.109 57.895 0.00 0.00 42.55 4.30
5834 6118 0.257039 CCTCAATTCTGTGGGAGGGG 59.743 60.000 0.00 0.00 42.55 4.79
5835 6119 1.289160 CTCAATTCTGTGGGAGGGGA 58.711 55.000 0.00 0.00 0.00 4.81
5836 6120 1.635487 CTCAATTCTGTGGGAGGGGAA 59.365 52.381 0.00 0.00 0.00 3.97
5837 6121 1.635487 TCAATTCTGTGGGAGGGGAAG 59.365 52.381 0.00 0.00 0.00 3.46
5838 6122 1.635487 CAATTCTGTGGGAGGGGAAGA 59.365 52.381 0.00 0.00 0.00 2.87
5839 6123 1.290134 ATTCTGTGGGAGGGGAAGAC 58.710 55.000 0.00 0.00 0.00 3.01
5840 6124 0.104672 TTCTGTGGGAGGGGAAGACA 60.105 55.000 0.00 0.00 0.00 3.41
5841 6125 0.119155 TCTGTGGGAGGGGAAGACAT 59.881 55.000 0.00 0.00 0.00 3.06
5842 6126 0.543749 CTGTGGGAGGGGAAGACATC 59.456 60.000 0.00 0.00 0.00 3.06
5843 6127 0.119155 TGTGGGAGGGGAAGACATCT 59.881 55.000 0.00 0.00 0.00 2.90
5844 6128 1.290134 GTGGGAGGGGAAGACATCTT 58.710 55.000 0.00 0.00 39.23 2.40
5845 6129 1.065126 GTGGGAGGGGAAGACATCTTG 60.065 57.143 0.00 0.00 36.11 3.02
5846 6130 0.548510 GGGAGGGGAAGACATCTTGG 59.451 60.000 0.00 0.00 36.11 3.61
5847 6131 0.106967 GGAGGGGAAGACATCTTGGC 60.107 60.000 0.00 0.00 36.11 4.52
5848 6132 0.620556 GAGGGGAAGACATCTTGGCA 59.379 55.000 0.00 0.00 36.11 4.92
5849 6133 1.213926 GAGGGGAAGACATCTTGGCAT 59.786 52.381 0.00 0.00 36.11 4.40
5850 6134 1.064166 AGGGGAAGACATCTTGGCATG 60.064 52.381 0.00 0.00 36.11 4.06
5851 6135 1.396653 GGGAAGACATCTTGGCATGG 58.603 55.000 0.00 0.00 36.11 3.66
5852 6136 1.396653 GGAAGACATCTTGGCATGGG 58.603 55.000 0.00 0.00 36.11 4.00
5853 6137 1.064463 GGAAGACATCTTGGCATGGGA 60.064 52.381 0.00 0.00 36.11 4.37
5854 6138 2.019984 GAAGACATCTTGGCATGGGAC 58.980 52.381 0.00 0.00 36.11 4.46
5855 6139 1.293062 AGACATCTTGGCATGGGACT 58.707 50.000 0.00 0.00 0.00 3.85
5856 6140 1.637553 AGACATCTTGGCATGGGACTT 59.362 47.619 0.00 0.00 0.00 3.01
5857 6141 1.747355 GACATCTTGGCATGGGACTTG 59.253 52.381 0.00 0.00 0.00 3.16
5858 6142 1.108776 CATCTTGGCATGGGACTTGG 58.891 55.000 0.00 0.00 0.00 3.61
5859 6143 1.002069 ATCTTGGCATGGGACTTGGA 58.998 50.000 0.00 0.00 0.00 3.53
5860 6144 0.776810 TCTTGGCATGGGACTTGGAA 59.223 50.000 0.00 0.00 0.00 3.53
5861 6145 1.146774 TCTTGGCATGGGACTTGGAAA 59.853 47.619 0.00 0.00 0.00 3.13
5862 6146 1.969923 CTTGGCATGGGACTTGGAAAA 59.030 47.619 0.00 0.00 0.00 2.29
5863 6147 1.631405 TGGCATGGGACTTGGAAAAG 58.369 50.000 0.00 0.00 0.00 2.27
5864 6148 1.133199 TGGCATGGGACTTGGAAAAGT 60.133 47.619 0.00 0.00 35.34 2.66
5865 6149 1.546029 GGCATGGGACTTGGAAAAGTC 59.454 52.381 9.60 9.60 46.36 3.01
5875 6159 6.301687 GACTTGGAAAAGTCAGGAAACTAC 57.698 41.667 12.54 0.00 46.34 2.73
5876 6160 6.002653 ACTTGGAAAAGTCAGGAAACTACT 57.997 37.500 0.00 0.00 40.21 2.57
5877 6161 6.056236 ACTTGGAAAAGTCAGGAAACTACTC 58.944 40.000 0.00 0.00 40.21 2.59
5878 6162 5.888982 TGGAAAAGTCAGGAAACTACTCT 57.111 39.130 0.00 0.00 40.21 3.24
5879 6163 5.611374 TGGAAAAGTCAGGAAACTACTCTG 58.389 41.667 0.00 0.00 40.21 3.35
5880 6164 5.130477 TGGAAAAGTCAGGAAACTACTCTGT 59.870 40.000 0.00 0.00 40.21 3.41
5881 6165 6.325545 TGGAAAAGTCAGGAAACTACTCTGTA 59.674 38.462 0.00 0.00 40.21 2.74
5882 6166 7.147620 TGGAAAAGTCAGGAAACTACTCTGTAA 60.148 37.037 0.00 0.00 40.21 2.41
5883 6167 7.713942 GGAAAAGTCAGGAAACTACTCTGTAAA 59.286 37.037 0.00 0.00 40.21 2.01
5884 6168 8.664211 AAAAGTCAGGAAACTACTCTGTAAAG 57.336 34.615 0.00 0.00 40.21 1.85
5885 6169 6.980416 AGTCAGGAAACTACTCTGTAAAGT 57.020 37.500 0.00 0.00 40.21 2.66
5886 6170 6.983984 AGTCAGGAAACTACTCTGTAAAGTC 58.016 40.000 0.00 0.00 40.21 3.01
5887 6171 6.550108 AGTCAGGAAACTACTCTGTAAAGTCA 59.450 38.462 0.00 0.00 40.21 3.41
5888 6172 6.864165 GTCAGGAAACTACTCTGTAAAGTCAG 59.136 42.308 0.00 0.00 40.21 3.51
5889 6173 5.635700 CAGGAAACTACTCTGTAAAGTCAGC 59.364 44.000 0.00 0.00 40.21 4.26
5890 6174 4.621886 GGAAACTACTCTGTAAAGTCAGCG 59.378 45.833 0.00 0.00 35.63 5.18
5891 6175 4.850347 AACTACTCTGTAAAGTCAGCGT 57.150 40.909 0.00 0.00 37.23 5.07
5892 6176 5.954296 AACTACTCTGTAAAGTCAGCGTA 57.046 39.130 0.00 0.00 35.46 4.42
5893 6177 6.512342 AACTACTCTGTAAAGTCAGCGTAT 57.488 37.500 0.00 0.00 35.85 3.06
5894 6178 6.121613 ACTACTCTGTAAAGTCAGCGTATC 57.878 41.667 0.00 0.00 35.85 2.24
5895 6179 4.017380 ACTCTGTAAAGTCAGCGTATCG 57.983 45.455 0.00 0.00 32.64 2.92
5896 6180 3.688185 ACTCTGTAAAGTCAGCGTATCGA 59.312 43.478 0.00 0.00 32.64 3.59
5897 6181 4.335874 ACTCTGTAAAGTCAGCGTATCGAT 59.664 41.667 2.16 2.16 32.64 3.59
5898 6182 4.845387 TCTGTAAAGTCAGCGTATCGATC 58.155 43.478 0.00 0.00 35.63 3.69
5899 6183 4.575236 TCTGTAAAGTCAGCGTATCGATCT 59.425 41.667 0.00 0.00 35.63 2.75
5900 6184 4.845387 TGTAAAGTCAGCGTATCGATCTC 58.155 43.478 0.00 0.00 0.00 2.75
5901 6185 4.575236 TGTAAAGTCAGCGTATCGATCTCT 59.425 41.667 0.00 0.00 0.00 3.10
5902 6186 4.640789 AAAGTCAGCGTATCGATCTCTT 57.359 40.909 0.00 0.00 0.00 2.85
5903 6187 5.752892 AAAGTCAGCGTATCGATCTCTTA 57.247 39.130 0.00 0.00 0.00 2.10
5904 6188 5.950758 AAGTCAGCGTATCGATCTCTTAT 57.049 39.130 0.00 0.00 0.00 1.73
5905 6189 5.289917 AGTCAGCGTATCGATCTCTTATG 57.710 43.478 0.00 0.00 0.00 1.90
5906 6190 4.998033 AGTCAGCGTATCGATCTCTTATGA 59.002 41.667 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
257 327 1.303643 CTTGCCCACTGGTCTTCCC 60.304 63.158 0.00 0.00 0.00 3.97
533 603 5.529430 ACATTTGATCACAACGGTACTTTGA 59.471 36.000 12.83 1.18 40.19 2.69
606 677 5.997385 AGTTGCTGTTTAATACCAAAGACG 58.003 37.500 0.00 0.00 0.00 4.18
618 689 9.569122 AGTCCTTAAAAGAATAGTTGCTGTTTA 57.431 29.630 0.00 0.00 0.00 2.01
653 724 4.782691 TGAAGTACCATCTGAAATCTGGGA 59.217 41.667 0.55 0.00 34.21 4.37
706 777 9.573166 AATGCAATATACTAGGTTCATAGCAAA 57.427 29.630 0.00 0.00 0.00 3.68
747 818 6.014012 AGTAAGAGAACTAGGATCATAGCCC 58.986 44.000 14.16 6.44 0.00 5.19
777 848 9.454585 CGAAATATAACATGCAGAAAACATCAT 57.545 29.630 0.00 0.00 0.00 2.45
782 853 5.458779 GCCCGAAATATAACATGCAGAAAAC 59.541 40.000 0.00 0.00 0.00 2.43
850 921 4.554960 TTACATTTGGTCGATACCCACA 57.445 40.909 0.00 0.00 46.16 4.17
1113 1187 1.817099 CCGGCAGCTCAAGATGGAC 60.817 63.158 0.00 0.00 31.02 4.02
1168 1242 3.181477 TGACCTCAACAAAAATGCAGTGG 60.181 43.478 0.00 0.00 0.00 4.00
1304 1378 3.181478 GCGCCACTTGTCCTAAGTAGTAT 60.181 47.826 0.00 0.00 0.00 2.12
1404 1478 3.373438 CCATTGGGTGATCATTCCTCCTT 60.373 47.826 15.95 0.65 0.00 3.36
1489 1563 3.627577 ACATTCCACAGTTCACTTGACAC 59.372 43.478 0.00 0.00 0.00 3.67
1602 1677 8.725148 GCATCCATAATAACTTGTCTTGGATAG 58.275 37.037 0.00 0.00 39.78 2.08
1972 2052 2.256117 ACCCTCTCCAAAAACTGTCG 57.744 50.000 0.00 0.00 0.00 4.35
2119 2199 6.483307 GCTATATGTGAGCTCATTTTGGTACA 59.517 38.462 21.47 10.78 36.96 2.90
2208 2288 8.364142 AGAAGAGACTATAGTATGTTGATTGCC 58.636 37.037 14.00 0.05 0.00 4.52
2262 2342 2.093783 GCTCGGTTCTACCATGTTTTCG 59.906 50.000 0.00 0.00 38.47 3.46
2411 2493 1.000359 GTAGGGCATGGCTTTGGGT 60.000 57.895 19.78 0.13 0.00 4.51
2414 2496 0.034186 TCAGGTAGGGCATGGCTTTG 60.034 55.000 19.78 7.21 0.00 2.77
2562 2644 3.518303 GGGTTTGAGCCTCCTTACTCTAA 59.482 47.826 0.00 0.00 33.92 2.10
2642 2724 4.216902 TGATGTTTGATCAGCAAGGAACAG 59.783 41.667 12.50 0.00 37.87 3.16
2764 2846 2.159179 AGGTGAAAGCAAACAAGGGT 57.841 45.000 0.00 0.00 36.26 4.34
2963 3045 8.564574 GTTCCAACTCAAACATCAATACTGTAA 58.435 33.333 0.00 0.00 0.00 2.41
2983 3065 4.141367 TGAGTGGTGACCAAATAGTTCCAA 60.141 41.667 5.57 0.00 34.18 3.53
3255 3337 5.897377 AACTAATTGGTGTTATCTGGCAC 57.103 39.130 0.00 0.00 35.07 5.01
3468 3550 1.902918 GCCACTTCACATGCCCACA 60.903 57.895 0.00 0.00 0.00 4.17
3539 3621 7.723324 TGGCCTGTAGTCTATACTTTTCATAC 58.277 38.462 3.32 0.00 37.15 2.39
3546 3630 8.320338 ACTAAAATGGCCTGTAGTCTATACTT 57.680 34.615 3.32 0.00 37.15 2.24
3571 3655 5.879763 ACCTGCAATATTCATAGTGGCATA 58.120 37.500 0.00 0.00 0.00 3.14
3722 3806 7.939782 TCAGCATCAACTTGAGATTTTGTAAA 58.060 30.769 0.00 0.00 0.00 2.01
3755 3839 2.672874 CGGCGGTCATGGTTATCATATG 59.327 50.000 0.00 0.00 34.12 1.78
3850 3934 2.202864 GCCGCCTCTGCTTCTCTC 60.203 66.667 0.00 0.00 34.43 3.20
3859 3943 2.365586 ATCTGCTTCTGCCGCCTCT 61.366 57.895 0.00 0.00 38.71 3.69
3901 3985 3.807622 CGTTTCTGTTCCTTACTGCTTCA 59.192 43.478 0.00 0.00 0.00 3.02
4151 4246 3.905493 TGGTTTGACTGGGGGAAATAA 57.095 42.857 0.00 0.00 0.00 1.40
4230 4325 6.449635 TTTTTATGGCGTCTTTGCTCATAT 57.550 33.333 0.00 0.00 32.16 1.78
4258 4355 7.987268 TTGTACATTCGAGAGATGATGTAAC 57.013 36.000 6.89 3.83 42.31 2.50
4393 4493 6.591935 TGAGAACATACTGTTTCAGAGGTTT 58.408 36.000 3.70 0.00 41.28 3.27
4394 4494 6.174720 TGAGAACATACTGTTTCAGAGGTT 57.825 37.500 3.70 4.90 41.28 3.50
4406 4506 6.360370 TTCTGGCTAACTTGAGAACATACT 57.640 37.500 0.00 0.00 0.00 2.12
4417 4517 6.648879 TTATTGCTTGTTTCTGGCTAACTT 57.351 33.333 0.00 0.00 0.00 2.66
4473 4573 9.561069 AATAGCCAATCACTATTCGACTAAATT 57.439 29.630 0.00 0.00 35.87 1.82
4527 4627 1.270826 TCCTTGACAGTTCGAGCAGAG 59.729 52.381 1.01 0.00 32.29 3.35
4552 4652 1.280710 TGTCCGTGGTAATGCCTGATT 59.719 47.619 0.00 0.00 38.35 2.57
4596 4698 2.157640 TTTTATGGCCCTGGTCATGG 57.842 50.000 13.46 0.00 40.98 3.66
4631 4733 5.409826 GGCACAAGCATATACTAAGTGGATC 59.590 44.000 9.34 0.00 44.61 3.36
4674 4776 3.003689 CAGGAGACCACATGACAAAACAC 59.996 47.826 0.00 0.00 0.00 3.32
4773 4992 7.305418 GCATGCGCTTAAAATCAACACTAATAC 60.305 37.037 9.73 0.00 34.30 1.89
4776 4995 4.856487 GCATGCGCTTAAAATCAACACTAA 59.144 37.500 9.73 0.00 34.30 2.24
4848 5067 5.128499 TGAATGAAGGGAGTCAGAATCTCTC 59.872 44.000 0.00 0.00 33.05 3.20
4849 5068 5.028802 TGAATGAAGGGAGTCAGAATCTCT 58.971 41.667 0.00 0.00 33.06 3.10
4878 5097 1.216178 GCCATCTGCGCACCAAAAT 59.784 52.632 5.66 0.00 0.00 1.82
4880 5099 3.372730 GGCCATCTGCGCACCAAA 61.373 61.111 5.66 0.00 42.61 3.28
4887 5106 2.110967 CAAGACTGGGCCATCTGCG 61.111 63.158 6.72 0.00 42.61 5.18
4888 5107 0.106819 ATCAAGACTGGGCCATCTGC 60.107 55.000 6.72 0.00 40.16 4.26
4889 5108 1.676746 CATCAAGACTGGGCCATCTG 58.323 55.000 6.72 0.00 0.00 2.90
4890 5109 0.106819 GCATCAAGACTGGGCCATCT 60.107 55.000 6.72 9.71 0.00 2.90
4891 5110 0.394762 TGCATCAAGACTGGGCCATC 60.395 55.000 6.72 7.29 0.00 3.51
4910 5129 3.151022 GAGCGGCTCAGGGTAGCT 61.151 66.667 24.42 0.00 42.37 3.32
4978 5203 3.119495 GCTGCTGTTAATCCAACCGAAAT 60.119 43.478 0.00 0.00 36.20 2.17
5037 5265 1.322442 ACTGGAGCTTGGCTGTTTTC 58.678 50.000 0.00 0.00 39.88 2.29
5038 5266 1.780503 AACTGGAGCTTGGCTGTTTT 58.219 45.000 0.00 0.00 39.88 2.43
5039 5267 1.683385 GAAACTGGAGCTTGGCTGTTT 59.317 47.619 0.00 1.82 39.88 2.83
5040 5268 1.322442 GAAACTGGAGCTTGGCTGTT 58.678 50.000 0.00 0.00 39.88 3.16
5041 5269 0.183492 TGAAACTGGAGCTTGGCTGT 59.817 50.000 0.00 0.00 39.88 4.40
5048 5276 1.302033 CGCTGGTGAAACTGGAGCT 60.302 57.895 0.00 0.00 36.74 4.09
5100 5332 3.583882 AATTGGTGGGTGAGGGGCG 62.584 63.158 0.00 0.00 0.00 6.13
5165 5402 1.804326 CGGGTCTCGGCGTTTACAG 60.804 63.158 6.85 0.00 34.75 2.74
5238 5493 4.263572 CGGCCTGTTCCACCACCA 62.264 66.667 0.00 0.00 0.00 4.17
5271 5526 3.735591 CCTAAAGGTCAAACGGTTCTCA 58.264 45.455 0.00 0.00 0.00 3.27
5296 5551 2.090524 GTGTAAACGAGTCCGCCGG 61.091 63.158 0.00 0.00 39.95 6.13
5297 5552 1.342082 CTGTGTAAACGAGTCCGCCG 61.342 60.000 0.00 0.00 39.95 6.46
5301 5556 1.429463 CAGCCTGTGTAAACGAGTCC 58.571 55.000 0.00 0.00 0.00 3.85
5303 5558 1.045407 TCCAGCCTGTGTAAACGAGT 58.955 50.000 0.00 0.00 0.00 4.18
5305 5560 2.224426 ACATTCCAGCCTGTGTAAACGA 60.224 45.455 0.00 0.00 0.00 3.85
5306 5561 2.095768 CACATTCCAGCCTGTGTAAACG 60.096 50.000 0.00 0.00 38.33 3.60
5308 5563 2.513753 CCACATTCCAGCCTGTGTAAA 58.486 47.619 2.43 0.00 40.89 2.01
5310 5565 0.327924 CCCACATTCCAGCCTGTGTA 59.672 55.000 2.43 0.00 40.89 2.90
5322 5577 2.358247 GACGGACGCACCCACATT 60.358 61.111 0.00 0.00 34.64 2.71
5363 5618 1.285950 GGTGCTTCCAACCGAAAGC 59.714 57.895 0.29 0.29 35.97 3.51
5382 5637 1.246056 TACCACTACGAACTGCCGCT 61.246 55.000 0.00 0.00 0.00 5.52
5390 5645 1.065491 TCGCCCTACTACCACTACGAA 60.065 52.381 0.00 0.00 0.00 3.85
5442 5703 3.065786 CCGTATTTGCATGCAATCTGACT 59.934 43.478 32.27 15.36 35.70 3.41
5525 5794 1.438059 CAACGCGCACGGTAACAAG 60.438 57.895 5.73 0.00 46.04 3.16
5582 5861 2.715046 CCCCTACACTACACGTCTACA 58.285 52.381 0.00 0.00 0.00 2.74
5587 5866 0.606604 CAAGCCCCTACACTACACGT 59.393 55.000 0.00 0.00 0.00 4.49
5588 5867 0.739813 GCAAGCCCCTACACTACACG 60.740 60.000 0.00 0.00 0.00 4.49
5589 5868 0.613777 AGCAAGCCCCTACACTACAC 59.386 55.000 0.00 0.00 0.00 2.90
5590 5869 1.003118 CAAGCAAGCCCCTACACTACA 59.997 52.381 0.00 0.00 0.00 2.74
5591 5870 1.679032 CCAAGCAAGCCCCTACACTAC 60.679 57.143 0.00 0.00 0.00 2.73
5592 5871 0.618458 CCAAGCAAGCCCCTACACTA 59.382 55.000 0.00 0.00 0.00 2.74
5593 5872 1.133809 TCCAAGCAAGCCCCTACACT 61.134 55.000 0.00 0.00 0.00 3.55
5634 5918 3.508840 CACCGCGAATTCCAGCCC 61.509 66.667 8.23 0.00 0.00 5.19
5635 5919 2.746277 ACACCGCGAATTCCAGCC 60.746 61.111 8.23 0.00 0.00 4.85
5646 5930 1.334689 CCCTTTTCTTTTCGACACCGC 60.335 52.381 0.00 0.00 35.37 5.68
5659 5943 1.300481 GGCTCATAGCGTCCCTTTTC 58.700 55.000 0.00 0.00 43.62 2.29
5660 5944 0.618458 TGGCTCATAGCGTCCCTTTT 59.382 50.000 0.00 0.00 43.62 2.27
5661 5945 0.107654 GTGGCTCATAGCGTCCCTTT 60.108 55.000 0.00 0.00 43.62 3.11
5671 5955 2.158652 ACCTAGCTAGACGTGGCTCATA 60.159 50.000 22.70 0.00 40.26 2.15
5676 5960 1.355916 CGACCTAGCTAGACGTGGC 59.644 63.158 22.70 6.42 0.00 5.01
5681 5965 1.150567 TCGACGCGACCTAGCTAGAC 61.151 60.000 22.70 13.90 34.40 2.59
5706 5990 0.386838 GTATTAGTCCGACCACCCCG 59.613 60.000 0.00 0.00 0.00 5.73
5707 5991 0.386838 CGTATTAGTCCGACCACCCC 59.613 60.000 0.00 0.00 0.00 4.95
5708 5992 0.249197 GCGTATTAGTCCGACCACCC 60.249 60.000 0.00 0.00 0.00 4.61
5709 5993 0.249197 GGCGTATTAGTCCGACCACC 60.249 60.000 0.00 0.00 0.00 4.61
5710 5994 0.457035 TGGCGTATTAGTCCGACCAC 59.543 55.000 0.00 0.00 0.00 4.16
5711 5995 1.184431 TTGGCGTATTAGTCCGACCA 58.816 50.000 0.00 0.00 0.00 4.02
5712 5996 2.298411 TTTGGCGTATTAGTCCGACC 57.702 50.000 0.00 0.00 0.00 4.79
5713 5997 4.870221 AATTTTGGCGTATTAGTCCGAC 57.130 40.909 0.00 0.00 0.00 4.79
5714 5998 4.333372 GGAAATTTTGGCGTATTAGTCCGA 59.667 41.667 0.00 0.00 0.00 4.55
5715 5999 4.334481 AGGAAATTTTGGCGTATTAGTCCG 59.666 41.667 0.00 0.00 0.00 4.79
5716 6000 5.449999 CCAGGAAATTTTGGCGTATTAGTCC 60.450 44.000 0.00 0.00 0.00 3.85
5717 6001 5.355910 TCCAGGAAATTTTGGCGTATTAGTC 59.644 40.000 4.28 0.00 34.38 2.59
5718 6002 5.258051 TCCAGGAAATTTTGGCGTATTAGT 58.742 37.500 4.28 0.00 34.38 2.24
5719 6003 5.733373 GCTCCAGGAAATTTTGGCGTATTAG 60.733 44.000 4.28 0.00 34.38 1.73
5720 6004 4.097286 GCTCCAGGAAATTTTGGCGTATTA 59.903 41.667 4.28 0.00 34.38 0.98
5721 6005 3.119137 GCTCCAGGAAATTTTGGCGTATT 60.119 43.478 4.28 0.00 34.38 1.89
5722 6006 2.427095 GCTCCAGGAAATTTTGGCGTAT 59.573 45.455 4.28 0.00 34.38 3.06
5723 6007 1.816224 GCTCCAGGAAATTTTGGCGTA 59.184 47.619 4.28 0.00 34.38 4.42
5724 6008 0.603065 GCTCCAGGAAATTTTGGCGT 59.397 50.000 4.28 0.00 34.38 5.68
5725 6009 0.602562 TGCTCCAGGAAATTTTGGCG 59.397 50.000 4.28 0.04 34.38 5.69
5726 6010 1.673923 GCTGCTCCAGGAAATTTTGGC 60.674 52.381 4.28 0.00 34.38 4.52
5727 6011 1.619827 TGCTGCTCCAGGAAATTTTGG 59.380 47.619 0.00 2.89 35.74 3.28
5728 6012 3.389925 TTGCTGCTCCAGGAAATTTTG 57.610 42.857 0.00 0.00 38.76 2.44
5729 6013 4.320870 CAATTGCTGCTCCAGGAAATTTT 58.679 39.130 0.00 0.00 44.25 1.82
5730 6014 3.307199 CCAATTGCTGCTCCAGGAAATTT 60.307 43.478 0.00 0.00 44.25 1.82
5731 6015 2.235402 CCAATTGCTGCTCCAGGAAATT 59.765 45.455 0.00 0.00 44.25 1.82
5732 6016 1.829222 CCAATTGCTGCTCCAGGAAAT 59.171 47.619 0.00 0.00 44.25 2.17
5733 6017 1.259609 CCAATTGCTGCTCCAGGAAA 58.740 50.000 0.00 0.00 44.25 3.13
5734 6018 0.612732 CCCAATTGCTGCTCCAGGAA 60.613 55.000 0.00 1.73 45.06 3.36
5735 6019 1.000521 CCCAATTGCTGCTCCAGGA 60.001 57.895 0.00 0.00 31.21 3.86
5736 6020 0.396695 ATCCCAATTGCTGCTCCAGG 60.397 55.000 0.00 0.00 31.21 4.45
5737 6021 0.744874 CATCCCAATTGCTGCTCCAG 59.255 55.000 0.00 0.00 34.12 3.86
5738 6022 0.332293 TCATCCCAATTGCTGCTCCA 59.668 50.000 0.00 0.00 0.00 3.86
5739 6023 1.030457 CTCATCCCAATTGCTGCTCC 58.970 55.000 0.00 0.00 0.00 4.70
5740 6024 1.030457 CCTCATCCCAATTGCTGCTC 58.970 55.000 0.00 0.00 0.00 4.26
5741 6025 0.627451 TCCTCATCCCAATTGCTGCT 59.373 50.000 0.00 0.00 0.00 4.24
5742 6026 1.135721 GTTCCTCATCCCAATTGCTGC 59.864 52.381 0.00 0.00 0.00 5.25
5743 6027 2.731572 AGTTCCTCATCCCAATTGCTG 58.268 47.619 0.00 0.00 0.00 4.41
5744 6028 4.591321 TTAGTTCCTCATCCCAATTGCT 57.409 40.909 0.00 0.00 0.00 3.91
5745 6029 5.049405 CGTATTAGTTCCTCATCCCAATTGC 60.049 44.000 0.00 0.00 0.00 3.56
5746 6030 5.049405 GCGTATTAGTTCCTCATCCCAATTG 60.049 44.000 0.00 0.00 0.00 2.32
5747 6031 5.063880 GCGTATTAGTTCCTCATCCCAATT 58.936 41.667 0.00 0.00 0.00 2.32
5748 6032 4.505039 GGCGTATTAGTTCCTCATCCCAAT 60.505 45.833 0.00 0.00 0.00 3.16
5749 6033 3.181458 GGCGTATTAGTTCCTCATCCCAA 60.181 47.826 0.00 0.00 0.00 4.12
5750 6034 2.367567 GGCGTATTAGTTCCTCATCCCA 59.632 50.000 0.00 0.00 0.00 4.37
5751 6035 2.367567 TGGCGTATTAGTTCCTCATCCC 59.632 50.000 0.00 0.00 0.00 3.85
5752 6036 3.746045 TGGCGTATTAGTTCCTCATCC 57.254 47.619 0.00 0.00 0.00 3.51
5753 6037 6.619801 ATTTTGGCGTATTAGTTCCTCATC 57.380 37.500 0.00 0.00 0.00 2.92
5754 6038 7.404671 AAATTTTGGCGTATTAGTTCCTCAT 57.595 32.000 0.00 0.00 0.00 2.90
5755 6039 6.127842 GGAAATTTTGGCGTATTAGTTCCTCA 60.128 38.462 0.00 0.00 31.34 3.86
5756 6040 6.095021 AGGAAATTTTGGCGTATTAGTTCCTC 59.905 38.462 0.00 0.00 38.30 3.71
5757 6041 5.949952 AGGAAATTTTGGCGTATTAGTTCCT 59.050 36.000 0.00 0.00 37.97 3.36
5758 6042 6.203808 AGGAAATTTTGGCGTATTAGTTCC 57.796 37.500 0.00 0.00 33.66 3.62
5759 6043 7.754625 TGTAGGAAATTTTGGCGTATTAGTTC 58.245 34.615 0.00 0.00 0.00 3.01
5760 6044 7.690952 TGTAGGAAATTTTGGCGTATTAGTT 57.309 32.000 0.00 0.00 0.00 2.24
5761 6045 7.012989 GGATGTAGGAAATTTTGGCGTATTAGT 59.987 37.037 0.00 0.00 0.00 2.24
5762 6046 7.228706 AGGATGTAGGAAATTTTGGCGTATTAG 59.771 37.037 0.00 0.00 0.00 1.73
5763 6047 7.012894 CAGGATGTAGGAAATTTTGGCGTATTA 59.987 37.037 0.00 0.00 0.00 0.98
5764 6048 5.891551 AGGATGTAGGAAATTTTGGCGTATT 59.108 36.000 0.00 0.00 0.00 1.89
5765 6049 5.299279 CAGGATGTAGGAAATTTTGGCGTAT 59.701 40.000 0.00 0.00 0.00 3.06
5766 6050 4.638421 CAGGATGTAGGAAATTTTGGCGTA 59.362 41.667 0.00 0.00 0.00 4.42
5767 6051 3.443681 CAGGATGTAGGAAATTTTGGCGT 59.556 43.478 0.00 0.00 0.00 5.68
5768 6052 3.694072 TCAGGATGTAGGAAATTTTGGCG 59.306 43.478 0.00 0.00 37.40 5.69
5769 6053 4.438744 CGTCAGGATGTAGGAAATTTTGGC 60.439 45.833 0.00 0.00 37.40 4.52
5770 6054 4.438744 GCGTCAGGATGTAGGAAATTTTGG 60.439 45.833 0.00 0.00 37.40 3.28
5771 6055 4.155826 TGCGTCAGGATGTAGGAAATTTTG 59.844 41.667 0.00 0.00 37.40 2.44
5772 6056 4.331968 TGCGTCAGGATGTAGGAAATTTT 58.668 39.130 0.00 0.00 37.40 1.82
5773 6057 3.941483 CTGCGTCAGGATGTAGGAAATTT 59.059 43.478 0.00 0.00 37.40 1.82
5774 6058 3.197766 TCTGCGTCAGGATGTAGGAAATT 59.802 43.478 6.74 0.00 37.40 1.82
5775 6059 2.766263 TCTGCGTCAGGATGTAGGAAAT 59.234 45.455 6.74 0.00 37.40 2.17
5776 6060 2.166459 CTCTGCGTCAGGATGTAGGAAA 59.834 50.000 6.74 0.00 37.40 3.13
5777 6061 1.751351 CTCTGCGTCAGGATGTAGGAA 59.249 52.381 6.74 0.00 37.40 3.36
5778 6062 1.393603 CTCTGCGTCAGGATGTAGGA 58.606 55.000 6.74 0.00 37.40 2.94
5779 6063 0.387202 CCTCTGCGTCAGGATGTAGG 59.613 60.000 6.74 3.10 37.40 3.18
5780 6064 0.249238 GCCTCTGCGTCAGGATGTAG 60.249 60.000 6.95 0.73 37.40 2.74
5781 6065 0.970427 TGCCTCTGCGTCAGGATGTA 60.970 55.000 6.95 0.00 41.78 2.29
5782 6066 1.830587 TTGCCTCTGCGTCAGGATGT 61.831 55.000 6.95 0.00 41.78 3.06
5783 6067 0.463295 ATTGCCTCTGCGTCAGGATG 60.463 55.000 6.95 0.00 41.78 3.51
5784 6068 0.179062 GATTGCCTCTGCGTCAGGAT 60.179 55.000 6.95 0.00 41.78 3.24
5785 6069 1.219124 GATTGCCTCTGCGTCAGGA 59.781 57.895 6.95 0.00 41.78 3.86
5786 6070 0.392193 AAGATTGCCTCTGCGTCAGG 60.392 55.000 6.95 0.27 41.78 3.86
5787 6071 0.725686 CAAGATTGCCTCTGCGTCAG 59.274 55.000 1.02 1.02 41.78 3.51
5788 6072 0.321346 TCAAGATTGCCTCTGCGTCA 59.679 50.000 0.00 0.00 41.78 4.35
5789 6073 1.442769 TTCAAGATTGCCTCTGCGTC 58.557 50.000 0.00 0.00 41.78 5.19
5790 6074 2.119801 ATTCAAGATTGCCTCTGCGT 57.880 45.000 0.00 0.00 41.78 5.24
5791 6075 4.320057 GGAATATTCAAGATTGCCTCTGCG 60.320 45.833 17.07 0.00 41.78 5.18
5792 6076 4.022503 GGGAATATTCAAGATTGCCTCTGC 60.023 45.833 17.07 0.00 40.59 4.26
5793 6077 4.522022 GGGGAATATTCAAGATTGCCTCTG 59.478 45.833 14.26 0.00 42.68 3.35
5794 6078 4.418190 AGGGGAATATTCAAGATTGCCTCT 59.582 41.667 14.26 7.63 42.68 3.69
5795 6079 4.734266 AGGGGAATATTCAAGATTGCCTC 58.266 43.478 14.26 5.65 42.68 4.70
5796 6080 4.168675 TGAGGGGAATATTCAAGATTGCCT 59.831 41.667 14.26 1.80 42.68 4.75
5797 6081 4.473444 TGAGGGGAATATTCAAGATTGCC 58.527 43.478 17.07 6.75 42.43 4.52
5798 6082 6.661304 ATTGAGGGGAATATTCAAGATTGC 57.339 37.500 17.07 0.00 34.64 3.56
5799 6083 8.358148 CAGAATTGAGGGGAATATTCAAGATTG 58.642 37.037 17.07 0.55 34.64 2.67
5800 6084 8.063770 ACAGAATTGAGGGGAATATTCAAGATT 58.936 33.333 17.07 7.78 34.64 2.40
5801 6085 7.504911 CACAGAATTGAGGGGAATATTCAAGAT 59.495 37.037 17.07 0.03 34.64 2.40
5802 6086 6.830324 CACAGAATTGAGGGGAATATTCAAGA 59.170 38.462 17.07 0.00 34.64 3.02
5803 6087 6.040166 CCACAGAATTGAGGGGAATATTCAAG 59.960 42.308 17.07 0.00 34.64 3.02
5804 6088 5.893255 CCACAGAATTGAGGGGAATATTCAA 59.107 40.000 17.07 3.64 35.52 2.69
5805 6089 5.448654 CCACAGAATTGAGGGGAATATTCA 58.551 41.667 17.07 0.00 32.05 2.57
5815 6099 0.257039 CCCCTCCCACAGAATTGAGG 59.743 60.000 0.00 0.00 43.29 3.86
5816 6100 1.289160 TCCCCTCCCACAGAATTGAG 58.711 55.000 0.00 0.00 0.00 3.02
5817 6101 1.635487 CTTCCCCTCCCACAGAATTGA 59.365 52.381 0.00 0.00 0.00 2.57
5818 6102 1.635487 TCTTCCCCTCCCACAGAATTG 59.365 52.381 0.00 0.00 0.00 2.32
5819 6103 1.636003 GTCTTCCCCTCCCACAGAATT 59.364 52.381 0.00 0.00 0.00 2.17
5820 6104 1.290134 GTCTTCCCCTCCCACAGAAT 58.710 55.000 0.00 0.00 0.00 2.40
5821 6105 0.104672 TGTCTTCCCCTCCCACAGAA 60.105 55.000 0.00 0.00 0.00 3.02
5822 6106 0.119155 ATGTCTTCCCCTCCCACAGA 59.881 55.000 0.00 0.00 0.00 3.41
5823 6107 0.543749 GATGTCTTCCCCTCCCACAG 59.456 60.000 0.00 0.00 0.00 3.66
5824 6108 0.119155 AGATGTCTTCCCCTCCCACA 59.881 55.000 0.00 0.00 0.00 4.17
5825 6109 1.065126 CAAGATGTCTTCCCCTCCCAC 60.065 57.143 0.00 0.00 33.11 4.61
5826 6110 1.289160 CAAGATGTCTTCCCCTCCCA 58.711 55.000 0.00 0.00 33.11 4.37
5827 6111 0.548510 CCAAGATGTCTTCCCCTCCC 59.451 60.000 0.00 0.00 33.11 4.30
5828 6112 0.106967 GCCAAGATGTCTTCCCCTCC 60.107 60.000 0.00 0.00 33.11 4.30
5829 6113 0.620556 TGCCAAGATGTCTTCCCCTC 59.379 55.000 0.00 0.00 33.11 4.30
5830 6114 1.064166 CATGCCAAGATGTCTTCCCCT 60.064 52.381 0.00 0.00 33.11 4.79
5831 6115 1.396653 CATGCCAAGATGTCTTCCCC 58.603 55.000 0.00 0.00 33.11 4.81
5832 6116 1.396653 CCATGCCAAGATGTCTTCCC 58.603 55.000 0.00 0.00 33.11 3.97
5833 6117 1.064463 TCCCATGCCAAGATGTCTTCC 60.064 52.381 0.00 0.00 33.11 3.46
5834 6118 2.019984 GTCCCATGCCAAGATGTCTTC 58.980 52.381 0.00 0.00 33.11 2.87
5835 6119 1.637553 AGTCCCATGCCAAGATGTCTT 59.362 47.619 0.00 0.00 36.45 3.01
5836 6120 1.293062 AGTCCCATGCCAAGATGTCT 58.707 50.000 0.00 0.00 0.00 3.41
5837 6121 1.747355 CAAGTCCCATGCCAAGATGTC 59.253 52.381 0.00 0.00 0.00 3.06
5838 6122 1.617804 CCAAGTCCCATGCCAAGATGT 60.618 52.381 0.00 0.00 0.00 3.06
5839 6123 1.108776 CCAAGTCCCATGCCAAGATG 58.891 55.000 0.00 0.00 0.00 2.90
5840 6124 1.002069 TCCAAGTCCCATGCCAAGAT 58.998 50.000 0.00 0.00 0.00 2.40
5841 6125 0.776810 TTCCAAGTCCCATGCCAAGA 59.223 50.000 0.00 0.00 0.00 3.02
5842 6126 1.631405 TTTCCAAGTCCCATGCCAAG 58.369 50.000 0.00 0.00 0.00 3.61
5843 6127 1.969923 CTTTTCCAAGTCCCATGCCAA 59.030 47.619 0.00 0.00 0.00 4.52
5844 6128 1.133199 ACTTTTCCAAGTCCCATGCCA 60.133 47.619 0.00 0.00 39.15 4.92
5845 6129 1.632589 ACTTTTCCAAGTCCCATGCC 58.367 50.000 0.00 0.00 39.15 4.40
5853 6137 6.002653 AGTAGTTTCCTGACTTTTCCAAGT 57.997 37.500 0.00 0.00 46.64 3.16
5854 6138 6.203723 CAGAGTAGTTTCCTGACTTTTCCAAG 59.796 42.308 0.00 0.00 35.92 3.61
5855 6139 6.055588 CAGAGTAGTTTCCTGACTTTTCCAA 58.944 40.000 0.00 0.00 0.00 3.53
5856 6140 5.130477 ACAGAGTAGTTTCCTGACTTTTCCA 59.870 40.000 0.00 0.00 0.00 3.53
5857 6141 5.612351 ACAGAGTAGTTTCCTGACTTTTCC 58.388 41.667 0.00 0.00 0.00 3.13
5858 6142 8.658499 TTTACAGAGTAGTTTCCTGACTTTTC 57.342 34.615 0.00 0.00 0.00 2.29
5859 6143 8.265764 ACTTTACAGAGTAGTTTCCTGACTTTT 58.734 33.333 0.00 0.00 0.00 2.27
5860 6144 7.793036 ACTTTACAGAGTAGTTTCCTGACTTT 58.207 34.615 0.00 0.00 0.00 2.66
5861 6145 7.069578 TGACTTTACAGAGTAGTTTCCTGACTT 59.930 37.037 0.00 0.00 0.00 3.01
5862 6146 6.550108 TGACTTTACAGAGTAGTTTCCTGACT 59.450 38.462 0.00 0.00 0.00 3.41
5863 6147 6.746120 TGACTTTACAGAGTAGTTTCCTGAC 58.254 40.000 0.00 0.00 0.00 3.51
5864 6148 6.516860 GCTGACTTTACAGAGTAGTTTCCTGA 60.517 42.308 0.00 0.00 39.94 3.86
5865 6149 5.635700 GCTGACTTTACAGAGTAGTTTCCTG 59.364 44.000 0.00 0.00 39.94 3.86
5866 6150 5.565045 CGCTGACTTTACAGAGTAGTTTCCT 60.565 44.000 0.00 0.00 39.94 3.36
5867 6151 4.621886 CGCTGACTTTACAGAGTAGTTTCC 59.378 45.833 0.00 0.00 39.94 3.13
5868 6152 5.221130 ACGCTGACTTTACAGAGTAGTTTC 58.779 41.667 0.00 0.00 45.77 2.78
5869 6153 5.197682 ACGCTGACTTTACAGAGTAGTTT 57.802 39.130 0.00 0.00 45.77 2.66
5870 6154 4.850347 ACGCTGACTTTACAGAGTAGTT 57.150 40.909 0.00 0.00 45.77 2.24
5875 6159 4.274421 TCGATACGCTGACTTTACAGAG 57.726 45.455 0.00 0.00 41.92 3.35
5876 6160 4.575236 AGATCGATACGCTGACTTTACAGA 59.425 41.667 0.00 0.00 39.94 3.41
5877 6161 4.849883 AGATCGATACGCTGACTTTACAG 58.150 43.478 0.00 0.00 40.43 2.74
5878 6162 4.575236 AGAGATCGATACGCTGACTTTACA 59.425 41.667 0.00 0.00 0.00 2.41
5879 6163 5.098218 AGAGATCGATACGCTGACTTTAC 57.902 43.478 0.00 0.00 0.00 2.01
5880 6164 5.752892 AAGAGATCGATACGCTGACTTTA 57.247 39.130 0.00 0.00 0.00 1.85
5881 6165 4.640789 AAGAGATCGATACGCTGACTTT 57.359 40.909 0.00 0.00 0.00 2.66
5882 6166 5.470437 TCATAAGAGATCGATACGCTGACTT 59.530 40.000 0.00 0.00 0.00 3.01
5883 6167 4.998033 TCATAAGAGATCGATACGCTGACT 59.002 41.667 0.00 0.00 0.00 3.41
5884 6168 5.284428 TCATAAGAGATCGATACGCTGAC 57.716 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.