Multiple sequence alignment - TraesCS5D01G384700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G384700 chr5D 100.000 3600 0 0 1 3600 454020388 454023987 0.000000e+00 6649
1 TraesCS5D01G384700 chr5D 80.197 813 110 31 2827 3600 470249538 470248738 2.430000e-156 562
2 TraesCS5D01G384700 chr5D 96.341 328 12 0 1 328 525464179 525463852 1.140000e-149 540
3 TraesCS5D01G384700 chr5D 96.073 331 11 2 1 331 438061794 438061466 4.090000e-149 538
4 TraesCS5D01G384700 chr5B 92.136 2378 104 26 479 2814 554763188 554765524 0.000000e+00 3278
5 TraesCS5D01G384700 chr5B 92.446 556 31 6 2136 2680 554773226 554773781 0.000000e+00 784
6 TraesCS5D01G384700 chr5B 92.978 356 18 4 1 350 493598840 493598486 2.480000e-141 512
7 TraesCS5D01G384700 chr5A 91.494 2410 98 39 462 2816 573050467 573052824 0.000000e+00 3216
8 TraesCS5D01G384700 chr2D 93.127 742 19 5 2827 3536 480298963 480298222 0.000000e+00 1059
9 TraesCS5D01G384700 chr2D 95.770 331 14 0 1 331 579559511 579559181 5.290000e-148 534
10 TraesCS5D01G384700 chr2D 74.631 812 143 47 2810 3596 534127560 534128333 2.100000e-77 300
11 TraesCS5D01G384700 chr2B 90.223 808 36 20 2827 3598 751009115 751009915 0.000000e+00 1014
12 TraesCS5D01G384700 chr2B 80.218 824 115 29 2815 3599 163137256 163136442 3.120000e-160 575
13 TraesCS5D01G384700 chr2B 79.506 810 106 34 2827 3597 575052861 575052073 4.120000e-144 521
14 TraesCS5D01G384700 chr2B 74.387 734 137 35 2827 3539 124237357 124238060 2.130000e-67 267
15 TraesCS5D01G384700 chr2B 72.340 799 158 40 2826 3600 125642147 125641388 3.670000e-45 193
16 TraesCS5D01G384700 chr7A 83.805 778 71 19 2863 3589 261690412 261691185 0.000000e+00 688
17 TraesCS5D01G384700 chr7A 80.297 807 103 34 2824 3598 735459604 735458822 3.140000e-155 558
18 TraesCS5D01G384700 chr7A 76.914 836 123 35 2813 3598 49772189 49771374 9.300000e-111 411
19 TraesCS5D01G384700 chr2A 80.769 780 91 36 2827 3591 731964778 731964043 4.060000e-154 555
20 TraesCS5D01G384700 chr7D 95.143 350 13 3 1 347 38669384 38669732 1.890000e-152 549
21 TraesCS5D01G384700 chr7D 94.633 354 15 2 1 350 422837438 422837791 2.440000e-151 545
22 TraesCS5D01G384700 chr7D 96.073 331 11 2 1 331 477407366 477407038 4.090000e-149 538
23 TraesCS5D01G384700 chr7D 93.182 352 20 4 1 352 66512745 66512398 6.890000e-142 514
24 TraesCS5D01G384700 chr7D 83.190 232 30 8 3373 3600 59885822 59885596 1.690000e-48 204
25 TraesCS5D01G384700 chr7D 81.028 253 36 9 3349 3597 584607712 584607956 1.320000e-44 191
26 TraesCS5D01G384700 chr6D 96.353 329 12 0 3 331 331251858 331251530 3.160000e-150 542
27 TraesCS5D01G384700 chr4A 79.273 825 120 26 2815 3597 26978260 26979075 2.460000e-146 529
28 TraesCS5D01G384700 chr6B 78.385 805 103 29 2835 3592 92290343 92291123 1.180000e-124 457
29 TraesCS5D01G384700 chr6A 84.416 77 10 2 3489 3564 531025515 531025440 1.390000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G384700 chr5D 454020388 454023987 3599 False 6649 6649 100.000 1 3600 1 chr5D.!!$F1 3599
1 TraesCS5D01G384700 chr5D 470248738 470249538 800 True 562 562 80.197 2827 3600 1 chr5D.!!$R2 773
2 TraesCS5D01G384700 chr5B 554763188 554765524 2336 False 3278 3278 92.136 479 2814 1 chr5B.!!$F1 2335
3 TraesCS5D01G384700 chr5B 554773226 554773781 555 False 784 784 92.446 2136 2680 1 chr5B.!!$F2 544
4 TraesCS5D01G384700 chr5A 573050467 573052824 2357 False 3216 3216 91.494 462 2816 1 chr5A.!!$F1 2354
5 TraesCS5D01G384700 chr2D 480298222 480298963 741 True 1059 1059 93.127 2827 3536 1 chr2D.!!$R1 709
6 TraesCS5D01G384700 chr2D 534127560 534128333 773 False 300 300 74.631 2810 3596 1 chr2D.!!$F1 786
7 TraesCS5D01G384700 chr2B 751009115 751009915 800 False 1014 1014 90.223 2827 3598 1 chr2B.!!$F2 771
8 TraesCS5D01G384700 chr2B 163136442 163137256 814 True 575 575 80.218 2815 3599 1 chr2B.!!$R2 784
9 TraesCS5D01G384700 chr2B 575052073 575052861 788 True 521 521 79.506 2827 3597 1 chr2B.!!$R3 770
10 TraesCS5D01G384700 chr2B 124237357 124238060 703 False 267 267 74.387 2827 3539 1 chr2B.!!$F1 712
11 TraesCS5D01G384700 chr7A 261690412 261691185 773 False 688 688 83.805 2863 3589 1 chr7A.!!$F1 726
12 TraesCS5D01G384700 chr7A 735458822 735459604 782 True 558 558 80.297 2824 3598 1 chr7A.!!$R2 774
13 TraesCS5D01G384700 chr7A 49771374 49772189 815 True 411 411 76.914 2813 3598 1 chr7A.!!$R1 785
14 TraesCS5D01G384700 chr2A 731964043 731964778 735 True 555 555 80.769 2827 3591 1 chr2A.!!$R1 764
15 TraesCS5D01G384700 chr4A 26978260 26979075 815 False 529 529 79.273 2815 3597 1 chr4A.!!$F1 782
16 TraesCS5D01G384700 chr6B 92290343 92291123 780 False 457 457 78.385 2835 3592 1 chr6B.!!$F1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.033090 AACGAACAGACCCGAGGTTC 59.967 55.0 0.00 0.00 35.25 3.62 F
809 818 0.105246 ACCCCTCTCCCTATCTGCTG 60.105 60.0 0.00 0.00 0.00 4.41 F
1332 1377 0.105555 CAGCAGGAGGAGGAGGAGAT 60.106 60.0 0.00 0.00 0.00 2.75 F
2060 2117 0.830023 TGCCCTGCCAAGGTTTAACC 60.830 55.0 5.91 5.91 42.74 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1359 0.105555 CATCTCCTCCTCCTCCTGCT 60.106 60.000 0.0 0.0 0.00 4.24 R
2428 2489 1.067295 TCAGCCTTCTCCACATGGTT 58.933 50.000 0.0 0.0 36.34 3.67 R
2557 2618 2.234661 CTGATACCTGCCAGTCTTGTGA 59.765 50.000 0.0 0.0 0.00 3.58 R
3064 3161 4.787563 GCCATGTGCGAAATTCTGACTATG 60.788 45.833 0.0 0.0 0.00 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.764128 TCGCCCATCTGAGGACCC 60.764 66.667 0.00 0.00 0.00 4.46
18 19 3.083349 CGCCCATCTGAGGACCCA 61.083 66.667 0.00 0.00 0.00 4.51
19 20 2.669133 CGCCCATCTGAGGACCCAA 61.669 63.158 0.00 0.00 0.00 4.12
20 21 1.691219 GCCCATCTGAGGACCCAAA 59.309 57.895 0.00 0.00 0.00 3.28
21 22 0.681243 GCCCATCTGAGGACCCAAAC 60.681 60.000 0.00 0.00 0.00 2.93
22 23 0.392998 CCCATCTGAGGACCCAAACG 60.393 60.000 0.00 0.00 0.00 3.60
23 24 0.392998 CCATCTGAGGACCCAAACGG 60.393 60.000 0.00 0.00 37.81 4.44
24 25 1.026718 CATCTGAGGACCCAAACGGC 61.027 60.000 0.00 0.00 33.26 5.68
25 26 2.198304 ATCTGAGGACCCAAACGGCC 62.198 60.000 0.00 0.00 33.26 6.13
26 27 3.172106 TGAGGACCCAAACGGCCA 61.172 61.111 2.24 0.00 33.26 5.36
27 28 2.359975 GAGGACCCAAACGGCCAG 60.360 66.667 2.24 0.00 33.26 4.85
28 29 3.175710 AGGACCCAAACGGCCAGT 61.176 61.111 2.24 0.00 33.26 4.00
29 30 2.983592 GGACCCAAACGGCCAGTG 60.984 66.667 2.24 0.00 33.26 3.66
30 31 3.670377 GACCCAAACGGCCAGTGC 61.670 66.667 2.24 0.00 33.26 4.40
40 41 4.101448 GCCAGTGCCGATGGACCT 62.101 66.667 3.28 0.00 40.51 3.85
41 42 2.187946 CCAGTGCCGATGGACCTC 59.812 66.667 0.00 0.00 40.51 3.85
42 43 2.187946 CAGTGCCGATGGACCTCC 59.812 66.667 0.00 0.00 0.00 4.30
51 52 2.204136 TGGACCTCCAGCCACCAT 60.204 61.111 0.00 0.00 42.01 3.55
52 53 1.082019 TGGACCTCCAGCCACCATA 59.918 57.895 0.00 0.00 42.01 2.74
53 54 0.982852 TGGACCTCCAGCCACCATAG 60.983 60.000 0.00 0.00 42.01 2.23
54 55 1.147153 GACCTCCAGCCACCATAGC 59.853 63.158 0.00 0.00 0.00 2.97
55 56 2.330924 GACCTCCAGCCACCATAGCC 62.331 65.000 0.00 0.00 0.00 3.93
56 57 2.512896 CTCCAGCCACCATAGCCC 59.487 66.667 0.00 0.00 0.00 5.19
57 58 3.466791 CTCCAGCCACCATAGCCCG 62.467 68.421 0.00 0.00 0.00 6.13
62 63 4.910585 CCACCATAGCCCGCGACC 62.911 72.222 8.23 0.00 0.00 4.79
63 64 3.849951 CACCATAGCCCGCGACCT 61.850 66.667 8.23 5.59 0.00 3.85
64 65 3.537874 ACCATAGCCCGCGACCTC 61.538 66.667 8.23 0.00 0.00 3.85
65 66 4.647615 CCATAGCCCGCGACCTCG 62.648 72.222 8.23 0.00 43.27 4.63
66 67 3.592814 CATAGCCCGCGACCTCGA 61.593 66.667 8.23 0.00 43.02 4.04
67 68 3.593794 ATAGCCCGCGACCTCGAC 61.594 66.667 8.23 0.00 43.02 4.20
72 73 3.574445 CCGCGACCTCGACGAGAT 61.574 66.667 26.11 9.50 43.02 2.75
73 74 2.052941 CGCGACCTCGACGAGATC 60.053 66.667 26.11 18.09 43.02 2.75
74 75 2.526993 CGCGACCTCGACGAGATCT 61.527 63.158 26.11 7.85 43.02 2.75
75 76 1.010574 GCGACCTCGACGAGATCTG 60.011 63.158 26.11 15.22 43.02 2.90
76 77 1.644372 CGACCTCGACGAGATCTGG 59.356 63.158 26.11 12.30 43.02 3.86
77 78 1.777030 CGACCTCGACGAGATCTGGG 61.777 65.000 26.11 11.55 43.02 4.45
78 79 1.448922 GACCTCGACGAGATCTGGGG 61.449 65.000 26.11 10.81 0.00 4.96
79 80 1.152943 CCTCGACGAGATCTGGGGA 60.153 63.158 26.11 5.30 0.00 4.81
80 81 0.538516 CCTCGACGAGATCTGGGGAT 60.539 60.000 26.11 0.00 34.45 3.85
81 82 0.878416 CTCGACGAGATCTGGGGATC 59.122 60.000 20.25 0.00 46.33 3.36
82 83 0.537600 TCGACGAGATCTGGGGATCC 60.538 60.000 9.72 1.92 46.96 3.36
83 84 1.528292 CGACGAGATCTGGGGATCCC 61.528 65.000 23.95 23.95 46.96 3.85
94 95 4.506255 GGATCCCCAACCCCGCTG 62.506 72.222 0.00 0.00 0.00 5.18
95 96 4.506255 GATCCCCAACCCCGCTGG 62.506 72.222 0.00 0.00 41.37 4.85
101 102 3.399181 CAACCCCGCTGGCTCCTA 61.399 66.667 0.00 0.00 37.83 2.94
102 103 3.083997 AACCCCGCTGGCTCCTAG 61.084 66.667 0.00 0.00 37.83 3.02
103 104 3.618855 AACCCCGCTGGCTCCTAGA 62.619 63.158 0.00 0.00 37.83 2.43
104 105 3.541713 CCCCGCTGGCTCCTAGAC 61.542 72.222 0.00 0.00 0.00 2.59
105 106 3.905678 CCCGCTGGCTCCTAGACG 61.906 72.222 0.00 0.00 0.00 4.18
106 107 2.829003 CCGCTGGCTCCTAGACGA 60.829 66.667 0.00 0.00 0.00 4.20
107 108 2.415608 CCGCTGGCTCCTAGACGAA 61.416 63.158 0.00 0.00 0.00 3.85
108 109 1.064946 CGCTGGCTCCTAGACGAAG 59.935 63.158 0.00 0.00 0.00 3.79
109 110 1.439644 GCTGGCTCCTAGACGAAGG 59.560 63.158 0.00 0.00 38.06 3.46
110 111 1.439644 CTGGCTCCTAGACGAAGGC 59.560 63.158 0.00 0.00 36.51 4.35
111 112 1.304962 TGGCTCCTAGACGAAGGCA 60.305 57.895 0.00 0.00 42.53 4.75
112 113 0.902984 TGGCTCCTAGACGAAGGCAA 60.903 55.000 7.75 0.00 41.91 4.52
113 114 0.249398 GGCTCCTAGACGAAGGCAAA 59.751 55.000 0.00 0.00 36.51 3.68
114 115 1.338769 GGCTCCTAGACGAAGGCAAAA 60.339 52.381 0.00 0.00 36.51 2.44
115 116 2.003301 GCTCCTAGACGAAGGCAAAAG 58.997 52.381 0.00 0.00 36.51 2.27
116 117 2.003301 CTCCTAGACGAAGGCAAAAGC 58.997 52.381 0.00 0.00 36.51 3.51
117 118 1.087501 CCTAGACGAAGGCAAAAGCC 58.912 55.000 0.00 0.00 0.00 4.35
118 119 1.339151 CCTAGACGAAGGCAAAAGCCT 60.339 52.381 2.59 2.59 42.86 4.58
119 120 2.003301 CTAGACGAAGGCAAAAGCCTC 58.997 52.381 9.77 3.07 39.63 4.70
120 121 0.951040 AGACGAAGGCAAAAGCCTCG 60.951 55.000 19.31 19.31 39.63 4.63
121 122 2.176792 CGAAGGCAAAAGCCTCGC 59.823 61.111 9.77 4.55 39.63 5.03
122 123 2.568612 GAAGGCAAAAGCCTCGCC 59.431 61.111 9.77 0.00 46.62 5.54
125 126 2.672996 GGCAAAAGCCTCGCCTGA 60.673 61.111 0.00 0.00 42.78 3.86
126 127 2.563427 GCAAAAGCCTCGCCTGAC 59.437 61.111 0.00 0.00 0.00 3.51
127 128 2.982744 GCAAAAGCCTCGCCTGACC 61.983 63.158 0.00 0.00 0.00 4.02
128 129 2.358737 AAAAGCCTCGCCTGACCG 60.359 61.111 0.00 0.00 0.00 4.79
155 156 2.943690 GGAGCCCGAAGAAACTTATTCC 59.056 50.000 0.00 0.00 0.00 3.01
156 157 3.606687 GAGCCCGAAGAAACTTATTCCA 58.393 45.455 0.00 0.00 0.00 3.53
157 158 4.007659 GAGCCCGAAGAAACTTATTCCAA 58.992 43.478 0.00 0.00 0.00 3.53
158 159 3.756963 AGCCCGAAGAAACTTATTCCAAC 59.243 43.478 0.00 0.00 0.00 3.77
159 160 3.425758 GCCCGAAGAAACTTATTCCAACG 60.426 47.826 0.00 0.00 0.00 4.10
160 161 3.425758 CCCGAAGAAACTTATTCCAACGC 60.426 47.826 0.00 0.00 0.00 4.84
161 162 3.404564 CGAAGAAACTTATTCCAACGCG 58.595 45.455 3.53 3.53 0.00 6.01
162 163 3.122278 CGAAGAAACTTATTCCAACGCGA 59.878 43.478 15.93 0.00 0.00 5.87
163 164 4.392216 GAAGAAACTTATTCCAACGCGAC 58.608 43.478 15.93 0.00 0.00 5.19
164 165 3.395639 AGAAACTTATTCCAACGCGACA 58.604 40.909 15.93 0.00 0.00 4.35
165 166 3.185797 AGAAACTTATTCCAACGCGACAC 59.814 43.478 15.93 0.00 0.00 3.67
166 167 1.435577 ACTTATTCCAACGCGACACC 58.564 50.000 15.93 0.00 0.00 4.16
167 168 1.270412 ACTTATTCCAACGCGACACCA 60.270 47.619 15.93 0.00 0.00 4.17
168 169 1.127951 CTTATTCCAACGCGACACCAC 59.872 52.381 15.93 0.00 0.00 4.16
169 170 0.671163 TATTCCAACGCGACACCACC 60.671 55.000 15.93 0.00 0.00 4.61
170 171 4.953868 TCCAACGCGACACCACCG 62.954 66.667 15.93 0.00 0.00 4.94
198 199 3.967715 GGCAACGTCTCCCTCAAC 58.032 61.111 0.00 0.00 0.00 3.18
199 200 1.671379 GGCAACGTCTCCCTCAACC 60.671 63.158 0.00 0.00 0.00 3.77
200 201 1.671379 GCAACGTCTCCCTCAACCC 60.671 63.158 0.00 0.00 0.00 4.11
201 202 2.058675 CAACGTCTCCCTCAACCCT 58.941 57.895 0.00 0.00 0.00 4.34
202 203 1.263356 CAACGTCTCCCTCAACCCTA 58.737 55.000 0.00 0.00 0.00 3.53
203 204 1.621814 CAACGTCTCCCTCAACCCTAA 59.378 52.381 0.00 0.00 0.00 2.69
204 205 1.264295 ACGTCTCCCTCAACCCTAAC 58.736 55.000 0.00 0.00 0.00 2.34
205 206 0.535797 CGTCTCCCTCAACCCTAACC 59.464 60.000 0.00 0.00 0.00 2.85
206 207 0.910338 GTCTCCCTCAACCCTAACCC 59.090 60.000 0.00 0.00 0.00 4.11
207 208 0.797579 TCTCCCTCAACCCTAACCCT 59.202 55.000 0.00 0.00 0.00 4.34
208 209 2.013006 TCTCCCTCAACCCTAACCCTA 58.987 52.381 0.00 0.00 0.00 3.53
209 210 2.117051 CTCCCTCAACCCTAACCCTAC 58.883 57.143 0.00 0.00 0.00 3.18
210 211 1.210538 CCCTCAACCCTAACCCTACC 58.789 60.000 0.00 0.00 0.00 3.18
211 212 1.556238 CCCTCAACCCTAACCCTACCA 60.556 57.143 0.00 0.00 0.00 3.25
212 213 1.558294 CCTCAACCCTAACCCTACCAC 59.442 57.143 0.00 0.00 0.00 4.16
213 214 2.262637 CTCAACCCTAACCCTACCACA 58.737 52.381 0.00 0.00 0.00 4.17
214 215 1.980036 TCAACCCTAACCCTACCACAC 59.020 52.381 0.00 0.00 0.00 3.82
215 216 1.700739 CAACCCTAACCCTACCACACA 59.299 52.381 0.00 0.00 0.00 3.72
216 217 1.355112 ACCCTAACCCTACCACACAC 58.645 55.000 0.00 0.00 0.00 3.82
217 218 0.616891 CCCTAACCCTACCACACACC 59.383 60.000 0.00 0.00 0.00 4.16
218 219 0.616891 CCTAACCCTACCACACACCC 59.383 60.000 0.00 0.00 0.00 4.61
219 220 1.354101 CTAACCCTACCACACACCCA 58.646 55.000 0.00 0.00 0.00 4.51
220 221 1.002773 CTAACCCTACCACACACCCAC 59.997 57.143 0.00 0.00 0.00 4.61
221 222 1.712000 AACCCTACCACACACCCACC 61.712 60.000 0.00 0.00 0.00 4.61
222 223 1.846124 CCCTACCACACACCCACCT 60.846 63.158 0.00 0.00 0.00 4.00
223 224 0.545787 CCCTACCACACACCCACCTA 60.546 60.000 0.00 0.00 0.00 3.08
224 225 1.354101 CCTACCACACACCCACCTAA 58.646 55.000 0.00 0.00 0.00 2.69
225 226 1.002773 CCTACCACACACCCACCTAAC 59.997 57.143 0.00 0.00 0.00 2.34
226 227 0.680618 TACCACACACCCACCTAACG 59.319 55.000 0.00 0.00 0.00 3.18
227 228 1.049855 ACCACACACCCACCTAACGA 61.050 55.000 0.00 0.00 0.00 3.85
228 229 0.107081 CCACACACCCACCTAACGAA 59.893 55.000 0.00 0.00 0.00 3.85
229 230 1.223187 CACACACCCACCTAACGAAC 58.777 55.000 0.00 0.00 0.00 3.95
230 231 0.831966 ACACACCCACCTAACGAACA 59.168 50.000 0.00 0.00 0.00 3.18
231 232 1.202604 ACACACCCACCTAACGAACAG 60.203 52.381 0.00 0.00 0.00 3.16
232 233 1.069513 CACACCCACCTAACGAACAGA 59.930 52.381 0.00 0.00 0.00 3.41
233 234 1.069668 ACACCCACCTAACGAACAGAC 59.930 52.381 0.00 0.00 0.00 3.51
234 235 0.683412 ACCCACCTAACGAACAGACC 59.317 55.000 0.00 0.00 0.00 3.85
235 236 0.036671 CCCACCTAACGAACAGACCC 60.037 60.000 0.00 0.00 0.00 4.46
236 237 0.389426 CCACCTAACGAACAGACCCG 60.389 60.000 0.00 0.00 0.00 5.28
237 238 0.599558 CACCTAACGAACAGACCCGA 59.400 55.000 0.00 0.00 0.00 5.14
238 239 0.886563 ACCTAACGAACAGACCCGAG 59.113 55.000 0.00 0.00 0.00 4.63
239 240 0.172803 CCTAACGAACAGACCCGAGG 59.827 60.000 0.00 0.00 0.00 4.63
240 241 0.886563 CTAACGAACAGACCCGAGGT 59.113 55.000 0.00 0.00 39.44 3.85
241 242 1.271656 CTAACGAACAGACCCGAGGTT 59.728 52.381 0.00 0.00 35.25 3.50
242 243 0.033090 AACGAACAGACCCGAGGTTC 59.967 55.000 0.00 0.00 35.25 3.62
243 244 1.080025 CGAACAGACCCGAGGTTCC 60.080 63.158 0.00 0.00 38.08 3.62
244 245 1.295746 GAACAGACCCGAGGTTCCC 59.704 63.158 0.00 0.00 35.25 3.97
245 246 2.181445 GAACAGACCCGAGGTTCCCC 62.181 65.000 0.00 0.00 35.25 4.81
246 247 3.400054 CAGACCCGAGGTTCCCCC 61.400 72.222 0.00 0.00 35.25 5.40
254 255 4.040198 AGGTTCCCCCTCCCTCCC 62.040 72.222 0.00 0.00 40.71 4.30
282 283 3.578272 CGGCCGACGGAGAGAGAG 61.578 72.222 24.07 0.00 39.42 3.20
283 284 3.213402 GGCCGACGGAGAGAGAGG 61.213 72.222 20.50 0.00 0.00 3.69
284 285 3.213402 GCCGACGGAGAGAGAGGG 61.213 72.222 20.50 0.00 0.00 4.30
285 286 2.590645 CCGACGGAGAGAGAGGGA 59.409 66.667 8.64 0.00 0.00 4.20
286 287 1.077644 CCGACGGAGAGAGAGGGAA 60.078 63.158 8.64 0.00 0.00 3.97
287 288 1.378124 CCGACGGAGAGAGAGGGAAC 61.378 65.000 8.64 0.00 0.00 3.62
319 320 4.144703 GGAACCCTCGTCGCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
320 321 4.144703 GAACCCTCGTCGCCTCCC 62.145 72.222 0.00 0.00 0.00 4.30
321 322 4.698625 AACCCTCGTCGCCTCCCT 62.699 66.667 0.00 0.00 0.00 4.20
322 323 3.292481 AACCCTCGTCGCCTCCCTA 62.292 63.158 0.00 0.00 0.00 3.53
323 324 2.907917 CCCTCGTCGCCTCCCTAG 60.908 72.222 0.00 0.00 0.00 3.02
324 325 2.192443 CCTCGTCGCCTCCCTAGA 59.808 66.667 0.00 0.00 0.00 2.43
325 326 1.228306 CCTCGTCGCCTCCCTAGAT 60.228 63.158 0.00 0.00 0.00 1.98
326 327 1.238625 CCTCGTCGCCTCCCTAGATC 61.239 65.000 0.00 0.00 0.00 2.75
327 328 1.570347 CTCGTCGCCTCCCTAGATCG 61.570 65.000 0.00 0.00 0.00 3.69
328 329 2.646143 GTCGCCTCCCTAGATCGC 59.354 66.667 0.00 0.00 0.00 4.58
329 330 2.597805 TCGCCTCCCTAGATCGCC 60.598 66.667 0.00 0.00 0.00 5.54
330 331 2.598985 CGCCTCCCTAGATCGCCT 60.599 66.667 0.00 0.00 0.00 5.52
331 332 2.203771 CGCCTCCCTAGATCGCCTT 61.204 63.158 0.00 0.00 0.00 4.35
332 333 1.369321 GCCTCCCTAGATCGCCTTG 59.631 63.158 0.00 0.00 0.00 3.61
333 334 1.115930 GCCTCCCTAGATCGCCTTGA 61.116 60.000 0.00 0.00 0.00 3.02
334 335 1.638529 CCTCCCTAGATCGCCTTGAT 58.361 55.000 0.00 0.00 41.06 2.57
345 346 3.261981 TCGCCTTGATCCTACTTTTCC 57.738 47.619 0.00 0.00 0.00 3.13
346 347 1.933853 CGCCTTGATCCTACTTTTCCG 59.066 52.381 0.00 0.00 0.00 4.30
347 348 2.289565 GCCTTGATCCTACTTTTCCGG 58.710 52.381 0.00 0.00 0.00 5.14
348 349 2.919228 CCTTGATCCTACTTTTCCGGG 58.081 52.381 0.00 0.00 0.00 5.73
349 350 2.421529 CCTTGATCCTACTTTTCCGGGG 60.422 54.545 0.00 0.00 0.00 5.73
350 351 1.209621 TGATCCTACTTTTCCGGGGG 58.790 55.000 0.00 0.00 0.00 5.40
351 352 0.179026 GATCCTACTTTTCCGGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
352 353 0.917333 ATCCTACTTTTCCGGGGGCA 60.917 55.000 0.00 0.00 0.00 5.36
353 354 1.378119 CCTACTTTTCCGGGGGCAC 60.378 63.158 0.00 0.00 0.00 5.01
373 374 2.598467 TCGGAGAGAGAGGAGGCC 59.402 66.667 0.00 0.00 0.00 5.19
374 375 2.277072 CGGAGAGAGAGGAGGCCA 59.723 66.667 5.01 0.00 0.00 5.36
375 376 2.124693 CGGAGAGAGAGGAGGCCAC 61.125 68.421 5.01 0.00 0.00 5.01
376 377 1.760480 GGAGAGAGAGGAGGCCACC 60.760 68.421 11.96 11.96 0.00 4.61
377 378 1.000993 GAGAGAGAGGAGGCCACCA 59.999 63.158 22.29 0.00 0.00 4.17
378 379 1.305718 AGAGAGAGGAGGCCACCAC 60.306 63.158 22.29 15.50 0.00 4.16
379 380 2.681778 AGAGAGGAGGCCACCACG 60.682 66.667 22.29 0.00 0.00 4.94
380 381 2.997897 GAGAGGAGGCCACCACGT 60.998 66.667 22.29 4.77 0.00 4.49
381 382 2.526873 AGAGGAGGCCACCACGTT 60.527 61.111 22.29 0.00 0.00 3.99
382 383 2.358737 GAGGAGGCCACCACGTTG 60.359 66.667 22.29 0.00 0.00 4.10
383 384 3.901797 GAGGAGGCCACCACGTTGG 62.902 68.421 22.29 1.66 45.02 3.77
385 386 4.265056 GAGGCCACCACGTTGGGT 62.265 66.667 5.01 0.00 43.37 4.51
386 387 2.850130 AGGCCACCACGTTGGGTA 60.850 61.111 5.01 0.00 43.37 3.69
387 388 2.193087 GAGGCCACCACGTTGGGTAT 62.193 60.000 5.01 0.00 43.37 2.73
388 389 1.303806 GGCCACCACGTTGGGTATT 60.304 57.895 8.33 0.00 43.37 1.89
389 390 1.591504 GGCCACCACGTTGGGTATTG 61.592 60.000 8.33 0.00 43.37 1.90
390 391 0.606944 GCCACCACGTTGGGTATTGA 60.607 55.000 8.33 0.00 43.37 2.57
391 392 1.448985 CCACCACGTTGGGTATTGAG 58.551 55.000 0.00 0.00 43.37 3.02
392 393 1.448985 CACCACGTTGGGTATTGAGG 58.551 55.000 0.00 0.00 43.37 3.86
393 394 1.002659 CACCACGTTGGGTATTGAGGA 59.997 52.381 0.00 0.00 43.37 3.71
394 395 1.913419 ACCACGTTGGGTATTGAGGAT 59.087 47.619 0.00 0.00 43.37 3.24
395 396 2.288666 CCACGTTGGGTATTGAGGATG 58.711 52.381 0.00 0.00 32.67 3.51
396 397 2.288666 CACGTTGGGTATTGAGGATGG 58.711 52.381 0.00 0.00 0.00 3.51
397 398 2.093181 CACGTTGGGTATTGAGGATGGA 60.093 50.000 0.00 0.00 0.00 3.41
398 399 2.574369 ACGTTGGGTATTGAGGATGGAA 59.426 45.455 0.00 0.00 0.00 3.53
399 400 3.202151 ACGTTGGGTATTGAGGATGGAAT 59.798 43.478 0.00 0.00 0.00 3.01
400 401 4.207165 CGTTGGGTATTGAGGATGGAATT 58.793 43.478 0.00 0.00 0.00 2.17
401 402 4.644685 CGTTGGGTATTGAGGATGGAATTT 59.355 41.667 0.00 0.00 0.00 1.82
402 403 5.127031 CGTTGGGTATTGAGGATGGAATTTT 59.873 40.000 0.00 0.00 0.00 1.82
403 404 6.350949 CGTTGGGTATTGAGGATGGAATTTTT 60.351 38.462 0.00 0.00 0.00 1.94
427 428 8.911918 TTTAGAAGCTACAAAAGTAATGGACA 57.088 30.769 0.00 0.00 0.00 4.02
428 429 6.803154 AGAAGCTACAAAAGTAATGGACAC 57.197 37.500 0.00 0.00 0.00 3.67
429 430 5.408604 AGAAGCTACAAAAGTAATGGACACG 59.591 40.000 0.00 0.00 0.00 4.49
430 431 4.638304 AGCTACAAAAGTAATGGACACGT 58.362 39.130 0.00 0.00 0.00 4.49
431 432 4.451096 AGCTACAAAAGTAATGGACACGTG 59.549 41.667 15.48 15.48 0.00 4.49
432 433 4.449743 GCTACAAAAGTAATGGACACGTGA 59.550 41.667 25.01 0.00 0.00 4.35
433 434 4.806342 ACAAAAGTAATGGACACGTGAC 57.194 40.909 25.01 16.95 0.00 3.67
434 435 3.246699 ACAAAAGTAATGGACACGTGACG 59.753 43.478 25.01 2.24 0.00 4.35
435 436 2.806608 AAGTAATGGACACGTGACGT 57.193 45.000 25.01 4.10 42.36 4.34
450 451 3.610040 TGACGTGAGGCACTTATCATT 57.390 42.857 0.00 0.00 46.72 2.57
451 452 3.937814 TGACGTGAGGCACTTATCATTT 58.062 40.909 0.00 0.00 46.72 2.32
452 453 5.079689 TGACGTGAGGCACTTATCATTTA 57.920 39.130 0.00 0.00 46.72 1.40
453 454 5.109210 TGACGTGAGGCACTTATCATTTAG 58.891 41.667 0.00 0.00 46.72 1.85
454 455 5.105513 TGACGTGAGGCACTTATCATTTAGA 60.106 40.000 0.00 0.00 46.72 2.10
455 456 5.730550 ACGTGAGGCACTTATCATTTAGAA 58.269 37.500 0.00 0.00 41.55 2.10
456 457 6.170506 ACGTGAGGCACTTATCATTTAGAAA 58.829 36.000 0.00 0.00 41.55 2.52
457 458 6.653320 ACGTGAGGCACTTATCATTTAGAAAA 59.347 34.615 0.00 0.00 41.55 2.29
458 459 7.174253 ACGTGAGGCACTTATCATTTAGAAAAA 59.826 33.333 0.00 0.00 41.55 1.94
459 460 8.184192 CGTGAGGCACTTATCATTTAGAAAAAT 58.816 33.333 0.00 0.00 41.55 1.82
486 487 5.805728 AGAAGAACACCAATAACCACCTAG 58.194 41.667 0.00 0.00 0.00 3.02
520 521 2.268796 TGGGGAACTGATGGAGATGA 57.731 50.000 0.00 0.00 0.00 2.92
554 555 2.030562 ACGTGTTGGCTTCTCCGG 59.969 61.111 0.00 0.00 37.80 5.14
693 694 1.681793 ACGATCCCGAGACAATACAGG 59.318 52.381 0.00 0.00 39.50 4.00
695 696 2.543861 CGATCCCGAGACAATACAGGTG 60.544 54.545 0.00 0.00 38.22 4.00
752 753 0.179189 CAGGGAAAAATCACGCGAGC 60.179 55.000 15.93 0.00 0.00 5.03
755 756 1.327764 GGGAAAAATCACGCGAGCTAG 59.672 52.381 15.93 0.00 0.00 3.42
756 757 1.327764 GGAAAAATCACGCGAGCTAGG 59.672 52.381 15.93 0.00 0.00 3.02
757 758 0.727398 AAAAATCACGCGAGCTAGGC 59.273 50.000 15.93 0.00 0.00 3.93
758 759 0.391130 AAAATCACGCGAGCTAGGCA 60.391 50.000 15.93 0.00 0.00 4.75
766 767 0.933796 GCGAGCTAGGCAATCTGTTC 59.066 55.000 4.45 0.00 0.00 3.18
784 786 0.881118 TCTTCCTTGCGCAATCCAAC 59.119 50.000 25.26 0.00 0.00 3.77
791 793 1.062525 GCGCAATCCAACCGATCAC 59.937 57.895 0.30 0.00 0.00 3.06
795 797 0.255890 CAATCCAACCGATCACCCCT 59.744 55.000 0.00 0.00 0.00 4.79
802 811 1.294426 ACCGATCACCCCTCTCCCTA 61.294 60.000 0.00 0.00 0.00 3.53
807 816 0.105453 TCACCCCTCTCCCTATCTGC 60.105 60.000 0.00 0.00 0.00 4.26
809 818 0.105246 ACCCCTCTCCCTATCTGCTG 60.105 60.000 0.00 0.00 0.00 4.41
813 822 1.070445 CCTCTCCCTATCTGCTGCAAG 59.930 57.143 3.02 0.00 0.00 4.01
833 842 1.406180 GCATTCATGGCAGCACATGTA 59.594 47.619 18.12 12.24 46.39 2.29
838 847 2.424246 TCATGGCAGCACATGTATGTTG 59.576 45.455 18.12 0.00 46.39 3.33
843 852 3.141002 CAGCACATGTATGTTGCCTTC 57.859 47.619 0.00 0.00 39.39 3.46
870 880 5.212532 AGAAGATCGATTGATTCTCTGGG 57.787 43.478 12.91 0.00 34.09 4.45
873 883 1.203237 TCGATTGATTCTCTGGGCCA 58.797 50.000 5.85 5.85 0.00 5.36
874 884 1.139654 TCGATTGATTCTCTGGGCCAG 59.860 52.381 28.01 28.01 0.00 4.85
875 885 1.316651 GATTGATTCTCTGGGCCAGC 58.683 55.000 29.02 14.64 0.00 4.85
876 886 0.924823 ATTGATTCTCTGGGCCAGCT 59.075 50.000 29.02 12.70 0.00 4.24
877 887 0.700564 TTGATTCTCTGGGCCAGCTT 59.299 50.000 29.02 12.50 0.00 3.74
878 888 0.254178 TGATTCTCTGGGCCAGCTTC 59.746 55.000 29.02 20.07 0.00 3.86
879 889 0.254178 GATTCTCTGGGCCAGCTTCA 59.746 55.000 29.02 10.70 0.00 3.02
880 890 0.255318 ATTCTCTGGGCCAGCTTCAG 59.745 55.000 29.02 20.04 0.00 3.02
881 891 1.845627 TTCTCTGGGCCAGCTTCAGG 61.846 60.000 29.02 13.12 0.00 3.86
882 892 2.530151 TCTGGGCCAGCTTCAGGT 60.530 61.111 29.02 0.00 0.00 4.00
883 893 2.360852 CTGGGCCAGCTTCAGGTG 60.361 66.667 22.68 0.00 42.71 4.00
884 894 2.853542 TGGGCCAGCTTCAGGTGA 60.854 61.111 0.00 0.00 45.66 4.02
885 895 2.207501 CTGGGCCAGCTTCAGGTGAT 62.208 60.000 22.68 0.00 45.66 3.06
886 896 1.000396 GGGCCAGCTTCAGGTGATT 60.000 57.895 4.39 0.00 45.66 2.57
887 897 0.255890 GGGCCAGCTTCAGGTGATTA 59.744 55.000 4.39 0.00 45.66 1.75
888 898 1.133668 GGGCCAGCTTCAGGTGATTAT 60.134 52.381 4.39 0.00 45.66 1.28
889 899 2.225467 GGCCAGCTTCAGGTGATTATC 58.775 52.381 7.60 0.00 45.66 1.75
890 900 2.421952 GGCCAGCTTCAGGTGATTATCA 60.422 50.000 7.60 0.00 45.66 2.15
891 901 3.484407 GCCAGCTTCAGGTGATTATCAT 58.516 45.455 7.60 0.00 45.66 2.45
892 902 3.887716 GCCAGCTTCAGGTGATTATCATT 59.112 43.478 7.60 0.00 45.66 2.57
893 903 5.065914 GCCAGCTTCAGGTGATTATCATTA 58.934 41.667 7.60 0.00 45.66 1.90
894 904 5.532406 GCCAGCTTCAGGTGATTATCATTAA 59.468 40.000 7.60 0.00 45.66 1.40
895 905 6.208204 GCCAGCTTCAGGTGATTATCATTAAT 59.792 38.462 7.60 0.00 45.66 1.40
896 906 7.591165 CCAGCTTCAGGTGATTATCATTAATG 58.409 38.462 9.29 9.29 45.66 1.90
897 907 7.446319 CCAGCTTCAGGTGATTATCATTAATGA 59.554 37.037 20.07 20.07 45.66 2.57
898 908 9.011095 CAGCTTCAGGTGATTATCATTAATGAT 57.989 33.333 28.95 28.95 45.86 2.45
899 909 9.228949 AGCTTCAGGTGATTATCATTAATGATC 57.771 33.333 29.66 19.16 43.72 2.92
900 910 9.228949 GCTTCAGGTGATTATCATTAATGATCT 57.771 33.333 29.66 19.88 43.72 2.75
938 948 4.409901 TCTCTGGCTCATTTGTATGATGGA 59.590 41.667 0.00 0.00 39.94 3.41
975 985 1.448189 CCGACGGCCGATTTAACCA 60.448 57.895 35.90 0.00 41.76 3.67
990 1000 2.270205 CCAGATTCTGGCGGTGCT 59.730 61.111 19.49 0.00 45.13 4.40
991 1001 1.817099 CCAGATTCTGGCGGTGCTC 60.817 63.158 19.49 0.00 45.13 4.26
992 1002 2.169789 CAGATTCTGGCGGTGCTCG 61.170 63.158 5.73 0.00 42.76 5.03
1032 1065 1.997928 GAAAGATGCAGCCTTCGCCC 61.998 60.000 0.00 0.00 34.57 6.13
1164 1197 3.554692 GATGCCGACAAGACGCCG 61.555 66.667 0.00 0.00 0.00 6.46
1262 1307 1.204704 CAGTAGTGACTTGATGGCGGA 59.795 52.381 0.00 0.00 31.73 5.54
1298 1343 2.893637 CAATCCGGTTGTTCGAGAGAT 58.106 47.619 0.00 0.00 41.60 2.75
1300 1345 1.254026 TCCGGTTGTTCGAGAGATGT 58.746 50.000 0.00 0.00 41.60 3.06
1314 1359 1.375908 GATGTCGTTGGCAGGAGCA 60.376 57.895 0.00 0.00 44.61 4.26
1315 1360 1.364626 GATGTCGTTGGCAGGAGCAG 61.365 60.000 0.00 0.00 44.61 4.24
1316 1361 3.426568 GTCGTTGGCAGGAGCAGC 61.427 66.667 0.00 0.00 44.61 5.25
1328 1373 2.365370 AGCAGCAGGAGGAGGAGG 60.365 66.667 0.00 0.00 0.00 4.30
1332 1377 0.105555 CAGCAGGAGGAGGAGGAGAT 60.106 60.000 0.00 0.00 0.00 2.75
1356 1401 2.663188 GAGGGATCATGCGACGCC 60.663 66.667 18.69 0.27 0.00 5.68
1361 1406 1.588932 GATCATGCGACGCCGAGAA 60.589 57.895 18.69 0.00 38.22 2.87
1545 1599 4.213694 ACGCTTGACATACTATCCTCTACG 59.786 45.833 0.00 0.00 0.00 3.51
1833 1890 2.370445 GCAGGCCAGGAGGAAGCTA 61.370 63.158 5.01 0.00 36.89 3.32
2060 2117 0.830023 TGCCCTGCCAAGGTTTAACC 60.830 55.000 5.91 5.91 42.74 2.85
2108 2169 2.484947 GGTGGAAAGGTTCGTCAGAAGT 60.485 50.000 0.00 0.00 36.99 3.01
2428 2489 1.841556 GACCAGGGACCAGTGGACA 60.842 63.158 18.40 0.00 37.27 4.02
2461 2522 1.376553 GCTGAAGGAGGTGGCTCAC 60.377 63.158 0.00 0.00 0.00 3.51
2491 2552 0.834687 ACCAGTACCCTTCGAAGCCA 60.835 55.000 19.99 3.63 0.00 4.75
2602 2672 8.459635 CAGAGAACACATTCAGATTCATGAAAT 58.540 33.333 13.09 1.14 42.21 2.17
2671 2743 8.697292 AGAGTTTCTAAGGTCACCATTAGATAC 58.303 37.037 18.46 18.46 38.85 2.24
2708 2780 0.598065 GCAAGCACCCGATTCAAACT 59.402 50.000 0.00 0.00 0.00 2.66
2710 2782 1.608590 CAAGCACCCGATTCAAACTGT 59.391 47.619 0.00 0.00 0.00 3.55
2788 2861 9.521503 GAATTTCTATGGCAGGAATAGTTTTTC 57.478 33.333 6.53 0.19 30.49 2.29
3295 3473 9.487790 TCCCATTTTGAAATATGTTTGAACTTC 57.512 29.630 0.00 0.00 0.00 3.01
3572 3825 7.651808 TCTTAAAAAGAGGTTCATGCTTTCAG 58.348 34.615 0.00 0.00 31.91 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.681243 GTTTGGGTCCTCAGATGGGC 60.681 60.000 0.00 0.00 0.00 5.36
3 4 0.392998 CGTTTGGGTCCTCAGATGGG 60.393 60.000 0.00 0.00 0.00 4.00
4 5 0.392998 CCGTTTGGGTCCTCAGATGG 60.393 60.000 0.00 0.00 0.00 3.51
6 7 1.299976 GCCGTTTGGGTCCTCAGAT 59.700 57.895 0.00 0.00 38.44 2.90
8 9 2.359975 GGCCGTTTGGGTCCTCAG 60.360 66.667 0.00 0.00 38.44 3.35
9 10 3.172106 TGGCCGTTTGGGTCCTCA 61.172 61.111 0.00 0.00 40.87 3.86
10 11 2.359975 CTGGCCGTTTGGGTCCTC 60.360 66.667 0.00 0.00 40.87 3.71
11 12 3.175710 ACTGGCCGTTTGGGTCCT 61.176 61.111 0.00 0.00 40.87 3.85
13 14 3.670377 GCACTGGCCGTTTGGGTC 61.670 66.667 0.00 0.00 42.42 4.46
23 24 4.101448 AGGTCCATCGGCACTGGC 62.101 66.667 0.00 0.00 40.13 4.85
24 25 2.187946 GAGGTCCATCGGCACTGG 59.812 66.667 0.00 0.00 34.93 4.00
25 26 2.187946 GGAGGTCCATCGGCACTG 59.812 66.667 0.00 0.00 35.64 3.66
26 27 2.284625 TGGAGGTCCATCGGCACT 60.285 61.111 0.00 0.00 42.01 4.40
27 28 2.187946 CTGGAGGTCCATCGGCAC 59.812 66.667 0.00 0.00 46.46 5.01
28 29 3.785859 GCTGGAGGTCCATCGGCA 61.786 66.667 0.00 0.00 46.46 5.69
29 30 4.554036 GGCTGGAGGTCCATCGGC 62.554 72.222 0.00 0.00 46.46 5.54
30 31 3.083349 TGGCTGGAGGTCCATCGG 61.083 66.667 0.00 0.00 46.46 4.18
31 32 2.187946 GTGGCTGGAGGTCCATCG 59.812 66.667 0.00 0.00 46.46 3.84
32 33 1.639635 ATGGTGGCTGGAGGTCCATC 61.640 60.000 0.00 0.00 46.46 3.51
33 34 0.327480 TATGGTGGCTGGAGGTCCAT 60.327 55.000 0.00 0.00 46.46 3.41
34 35 0.982852 CTATGGTGGCTGGAGGTCCA 60.983 60.000 0.00 0.00 45.30 4.02
35 36 1.832912 CTATGGTGGCTGGAGGTCC 59.167 63.158 0.00 0.00 0.00 4.46
36 37 1.147153 GCTATGGTGGCTGGAGGTC 59.853 63.158 0.00 0.00 0.00 3.85
37 38 2.378634 GGCTATGGTGGCTGGAGGT 61.379 63.158 0.00 0.00 0.00 3.85
38 39 2.512896 GGCTATGGTGGCTGGAGG 59.487 66.667 0.00 0.00 0.00 4.30
39 40 2.512896 GGGCTATGGTGGCTGGAG 59.487 66.667 0.00 0.00 0.00 3.86
40 41 3.479203 CGGGCTATGGTGGCTGGA 61.479 66.667 0.00 0.00 35.54 3.86
45 46 4.910585 GGTCGCGGGCTATGGTGG 62.911 72.222 6.13 0.00 0.00 4.61
46 47 3.792053 GAGGTCGCGGGCTATGGTG 62.792 68.421 6.13 0.00 0.00 4.17
47 48 3.537874 GAGGTCGCGGGCTATGGT 61.538 66.667 6.13 0.00 0.00 3.55
48 49 4.647615 CGAGGTCGCGGGCTATGG 62.648 72.222 6.13 0.00 0.00 2.74
49 50 3.592814 TCGAGGTCGCGGGCTATG 61.593 66.667 6.13 0.00 39.60 2.23
50 51 3.593794 GTCGAGGTCGCGGGCTAT 61.594 66.667 6.13 0.00 39.60 2.97
55 56 3.509296 GATCTCGTCGAGGTCGCGG 62.509 68.421 19.18 0.00 38.60 6.46
56 57 2.052941 GATCTCGTCGAGGTCGCG 60.053 66.667 19.18 0.00 39.60 5.87
57 58 1.010574 CAGATCTCGTCGAGGTCGC 60.011 63.158 25.68 7.87 43.86 5.19
58 59 1.644372 CCAGATCTCGTCGAGGTCG 59.356 63.158 25.68 20.23 43.86 4.79
59 60 1.448922 CCCCAGATCTCGTCGAGGTC 61.449 65.000 24.99 24.99 39.87 3.85
60 61 1.454111 CCCCAGATCTCGTCGAGGT 60.454 63.158 21.63 15.70 0.00 3.85
61 62 0.538516 ATCCCCAGATCTCGTCGAGG 60.539 60.000 21.63 6.45 0.00 4.63
62 63 0.878416 GATCCCCAGATCTCGTCGAG 59.122 60.000 16.33 16.33 44.78 4.04
63 64 0.537600 GGATCCCCAGATCTCGTCGA 60.538 60.000 0.00 0.00 46.96 4.20
64 65 1.528292 GGGATCCCCAGATCTCGTCG 61.528 65.000 21.42 0.00 46.96 5.12
65 66 2.356992 GGGATCCCCAGATCTCGTC 58.643 63.158 21.42 0.00 46.96 4.20
66 67 4.629442 GGGATCCCCAGATCTCGT 57.371 61.111 21.42 0.00 46.96 4.18
77 78 4.506255 CAGCGGGGTTGGGGATCC 62.506 72.222 1.92 1.92 0.00 3.36
78 79 4.506255 CCAGCGGGGTTGGGGATC 62.506 72.222 0.00 0.00 30.12 3.36
87 88 3.541713 GTCTAGGAGCCAGCGGGG 61.542 72.222 4.64 0.00 40.85 5.73
88 89 3.905678 CGTCTAGGAGCCAGCGGG 61.906 72.222 0.00 0.00 37.18 6.13
89 90 2.343163 CTTCGTCTAGGAGCCAGCGG 62.343 65.000 0.00 0.00 0.00 5.52
90 91 1.064946 CTTCGTCTAGGAGCCAGCG 59.935 63.158 0.00 0.00 0.00 5.18
91 92 1.439644 CCTTCGTCTAGGAGCCAGC 59.560 63.158 0.00 0.00 37.50 4.85
92 93 1.323271 TGCCTTCGTCTAGGAGCCAG 61.323 60.000 5.39 0.00 37.50 4.85
93 94 0.902984 TTGCCTTCGTCTAGGAGCCA 60.903 55.000 5.39 0.00 37.50 4.75
94 95 0.249398 TTTGCCTTCGTCTAGGAGCC 59.751 55.000 5.39 0.00 37.50 4.70
95 96 2.003301 CTTTTGCCTTCGTCTAGGAGC 58.997 52.381 5.39 0.00 37.50 4.70
96 97 2.003301 GCTTTTGCCTTCGTCTAGGAG 58.997 52.381 5.39 0.00 37.50 3.69
97 98 2.094762 GCTTTTGCCTTCGTCTAGGA 57.905 50.000 5.39 0.00 37.50 2.94
109 110 2.563427 GTCAGGCGAGGCTTTTGC 59.437 61.111 0.00 0.00 46.64 3.68
110 111 2.680913 CGGTCAGGCGAGGCTTTTG 61.681 63.158 0.00 0.00 0.00 2.44
111 112 2.358737 CGGTCAGGCGAGGCTTTT 60.359 61.111 0.00 0.00 0.00 2.27
134 135 2.943690 GGAATAAGTTTCTTCGGGCTCC 59.056 50.000 0.00 0.00 0.00 4.70
135 136 3.606687 TGGAATAAGTTTCTTCGGGCTC 58.393 45.455 0.00 0.00 0.00 4.70
136 137 3.713826 TGGAATAAGTTTCTTCGGGCT 57.286 42.857 0.00 0.00 0.00 5.19
137 138 3.425758 CGTTGGAATAAGTTTCTTCGGGC 60.426 47.826 0.00 0.00 0.00 6.13
138 139 3.425758 GCGTTGGAATAAGTTTCTTCGGG 60.426 47.826 0.00 0.00 0.00 5.14
139 140 3.723835 CGCGTTGGAATAAGTTTCTTCGG 60.724 47.826 0.00 0.00 0.00 4.30
140 141 3.122278 TCGCGTTGGAATAAGTTTCTTCG 59.878 43.478 5.77 0.00 0.00 3.79
141 142 4.084223 TGTCGCGTTGGAATAAGTTTCTTC 60.084 41.667 5.77 0.00 0.00 2.87
142 143 3.810941 TGTCGCGTTGGAATAAGTTTCTT 59.189 39.130 5.77 0.00 0.00 2.52
143 144 3.185797 GTGTCGCGTTGGAATAAGTTTCT 59.814 43.478 5.77 0.00 0.00 2.52
144 145 3.476181 GTGTCGCGTTGGAATAAGTTTC 58.524 45.455 5.77 0.00 0.00 2.78
145 146 2.224784 GGTGTCGCGTTGGAATAAGTTT 59.775 45.455 5.77 0.00 0.00 2.66
146 147 1.802365 GGTGTCGCGTTGGAATAAGTT 59.198 47.619 5.77 0.00 0.00 2.66
147 148 1.270412 TGGTGTCGCGTTGGAATAAGT 60.270 47.619 5.77 0.00 0.00 2.24
148 149 1.127951 GTGGTGTCGCGTTGGAATAAG 59.872 52.381 5.77 0.00 0.00 1.73
149 150 1.149987 GTGGTGTCGCGTTGGAATAA 58.850 50.000 5.77 0.00 0.00 1.40
150 151 0.671163 GGTGGTGTCGCGTTGGAATA 60.671 55.000 5.77 0.00 0.00 1.75
151 152 1.964373 GGTGGTGTCGCGTTGGAAT 60.964 57.895 5.77 0.00 0.00 3.01
152 153 2.589442 GGTGGTGTCGCGTTGGAA 60.589 61.111 5.77 0.00 0.00 3.53
153 154 4.953868 CGGTGGTGTCGCGTTGGA 62.954 66.667 5.77 0.00 0.00 3.53
177 178 3.358076 GAGGGAGACGTTGCCGAGG 62.358 68.421 0.00 0.00 43.23 4.63
178 179 2.154798 TTGAGGGAGACGTTGCCGAG 62.155 60.000 0.00 0.00 43.23 4.63
179 180 2.204461 TTGAGGGAGACGTTGCCGA 61.204 57.895 0.00 0.00 43.23 5.54
180 181 2.027625 GTTGAGGGAGACGTTGCCG 61.028 63.158 0.00 0.00 43.23 5.69
181 182 1.671379 GGTTGAGGGAGACGTTGCC 60.671 63.158 0.00 0.00 37.61 4.52
182 183 1.671379 GGGTTGAGGGAGACGTTGC 60.671 63.158 0.00 0.00 0.00 4.17
183 184 1.263356 TAGGGTTGAGGGAGACGTTG 58.737 55.000 0.00 0.00 0.00 4.10
184 185 1.622312 GTTAGGGTTGAGGGAGACGTT 59.378 52.381 0.00 0.00 0.00 3.99
185 186 1.264295 GTTAGGGTTGAGGGAGACGT 58.736 55.000 0.00 0.00 0.00 4.34
186 187 0.535797 GGTTAGGGTTGAGGGAGACG 59.464 60.000 0.00 0.00 0.00 4.18
187 188 0.910338 GGGTTAGGGTTGAGGGAGAC 59.090 60.000 0.00 0.00 0.00 3.36
188 189 0.797579 AGGGTTAGGGTTGAGGGAGA 59.202 55.000 0.00 0.00 0.00 3.71
189 190 2.117051 GTAGGGTTAGGGTTGAGGGAG 58.883 57.143 0.00 0.00 0.00 4.30
190 191 1.274011 GGTAGGGTTAGGGTTGAGGGA 60.274 57.143 0.00 0.00 0.00 4.20
191 192 1.210538 GGTAGGGTTAGGGTTGAGGG 58.789 60.000 0.00 0.00 0.00 4.30
192 193 1.558294 GTGGTAGGGTTAGGGTTGAGG 59.442 57.143 0.00 0.00 0.00 3.86
193 194 2.027469 GTGTGGTAGGGTTAGGGTTGAG 60.027 54.545 0.00 0.00 0.00 3.02
194 195 1.980036 GTGTGGTAGGGTTAGGGTTGA 59.020 52.381 0.00 0.00 0.00 3.18
195 196 1.700739 TGTGTGGTAGGGTTAGGGTTG 59.299 52.381 0.00 0.00 0.00 3.77
196 197 1.701292 GTGTGTGGTAGGGTTAGGGTT 59.299 52.381 0.00 0.00 0.00 4.11
197 198 1.355112 GTGTGTGGTAGGGTTAGGGT 58.645 55.000 0.00 0.00 0.00 4.34
198 199 0.616891 GGTGTGTGGTAGGGTTAGGG 59.383 60.000 0.00 0.00 0.00 3.53
199 200 0.616891 GGGTGTGTGGTAGGGTTAGG 59.383 60.000 0.00 0.00 0.00 2.69
200 201 1.002773 GTGGGTGTGTGGTAGGGTTAG 59.997 57.143 0.00 0.00 0.00 2.34
201 202 1.058284 GTGGGTGTGTGGTAGGGTTA 58.942 55.000 0.00 0.00 0.00 2.85
202 203 1.712000 GGTGGGTGTGTGGTAGGGTT 61.712 60.000 0.00 0.00 0.00 4.11
203 204 2.151388 GGTGGGTGTGTGGTAGGGT 61.151 63.158 0.00 0.00 0.00 4.34
204 205 0.545787 TAGGTGGGTGTGTGGTAGGG 60.546 60.000 0.00 0.00 0.00 3.53
205 206 1.002773 GTTAGGTGGGTGTGTGGTAGG 59.997 57.143 0.00 0.00 0.00 3.18
206 207 1.337447 CGTTAGGTGGGTGTGTGGTAG 60.337 57.143 0.00 0.00 0.00 3.18
207 208 0.680618 CGTTAGGTGGGTGTGTGGTA 59.319 55.000 0.00 0.00 0.00 3.25
208 209 1.049855 TCGTTAGGTGGGTGTGTGGT 61.050 55.000 0.00 0.00 0.00 4.16
209 210 0.107081 TTCGTTAGGTGGGTGTGTGG 59.893 55.000 0.00 0.00 0.00 4.17
210 211 1.223187 GTTCGTTAGGTGGGTGTGTG 58.777 55.000 0.00 0.00 0.00 3.82
211 212 0.831966 TGTTCGTTAGGTGGGTGTGT 59.168 50.000 0.00 0.00 0.00 3.72
212 213 1.069513 TCTGTTCGTTAGGTGGGTGTG 59.930 52.381 0.00 0.00 0.00 3.82
213 214 1.069668 GTCTGTTCGTTAGGTGGGTGT 59.930 52.381 0.00 0.00 0.00 4.16
214 215 1.607251 GGTCTGTTCGTTAGGTGGGTG 60.607 57.143 0.00 0.00 0.00 4.61
215 216 0.683412 GGTCTGTTCGTTAGGTGGGT 59.317 55.000 0.00 0.00 0.00 4.51
216 217 0.036671 GGGTCTGTTCGTTAGGTGGG 60.037 60.000 0.00 0.00 0.00 4.61
217 218 0.389426 CGGGTCTGTTCGTTAGGTGG 60.389 60.000 0.00 0.00 0.00 4.61
218 219 0.599558 TCGGGTCTGTTCGTTAGGTG 59.400 55.000 0.00 0.00 0.00 4.00
219 220 0.886563 CTCGGGTCTGTTCGTTAGGT 59.113 55.000 0.00 0.00 0.00 3.08
220 221 0.172803 CCTCGGGTCTGTTCGTTAGG 59.827 60.000 0.00 0.00 0.00 2.69
221 222 0.886563 ACCTCGGGTCTGTTCGTTAG 59.113 55.000 0.00 0.00 0.00 2.34
222 223 1.270550 GAACCTCGGGTCTGTTCGTTA 59.729 52.381 0.00 0.00 33.12 3.18
223 224 0.033090 GAACCTCGGGTCTGTTCGTT 59.967 55.000 0.00 0.00 33.12 3.85
224 225 1.664306 GAACCTCGGGTCTGTTCGT 59.336 57.895 0.00 0.00 33.12 3.85
225 226 1.080025 GGAACCTCGGGTCTGTTCG 60.080 63.158 0.36 0.00 39.36 3.95
265 266 3.578272 CTCTCTCTCCGTCGGCCG 61.578 72.222 22.12 22.12 0.00 6.13
266 267 3.213402 CCTCTCTCTCCGTCGGCC 61.213 72.222 6.34 0.00 0.00 6.13
267 268 3.213402 CCCTCTCTCTCCGTCGGC 61.213 72.222 6.34 0.00 0.00 5.54
268 269 1.077644 TTCCCTCTCTCTCCGTCGG 60.078 63.158 4.39 4.39 0.00 4.79
269 270 1.378124 GGTTCCCTCTCTCTCCGTCG 61.378 65.000 0.00 0.00 0.00 5.12
270 271 1.378124 CGGTTCCCTCTCTCTCCGTC 61.378 65.000 0.00 0.00 34.38 4.79
271 272 1.378778 CGGTTCCCTCTCTCTCCGT 60.379 63.158 0.00 0.00 34.38 4.69
272 273 2.122167 CCGGTTCCCTCTCTCTCCG 61.122 68.421 0.00 0.00 38.05 4.63
273 274 2.428085 GCCGGTTCCCTCTCTCTCC 61.428 68.421 1.90 0.00 0.00 3.71
274 275 2.776913 CGCCGGTTCCCTCTCTCTC 61.777 68.421 1.90 0.00 0.00 3.20
275 276 2.756283 CGCCGGTTCCCTCTCTCT 60.756 66.667 1.90 0.00 0.00 3.10
276 277 3.839432 CCGCCGGTTCCCTCTCTC 61.839 72.222 1.90 0.00 0.00 3.20
292 293 4.660938 AGGGTTCCCTTGCACGCC 62.661 66.667 4.31 0.00 31.29 5.68
293 294 3.056328 GAGGGTTCCCTTGCACGC 61.056 66.667 12.04 0.00 36.43 5.34
294 295 2.742372 CGAGGGTTCCCTTGCACG 60.742 66.667 12.04 7.05 36.43 5.34
295 296 1.671379 GACGAGGGTTCCCTTGCAC 60.671 63.158 21.52 13.70 40.45 4.57
296 297 2.747686 GACGAGGGTTCCCTTGCA 59.252 61.111 21.52 0.00 40.45 4.08
297 298 2.434359 CGACGAGGGTTCCCTTGC 60.434 66.667 21.52 14.36 40.45 4.01
298 299 2.434359 GCGACGAGGGTTCCCTTG 60.434 66.667 20.35 20.35 42.06 3.61
299 300 3.703127 GGCGACGAGGGTTCCCTT 61.703 66.667 12.04 0.00 36.43 3.95
300 301 4.698625 AGGCGACGAGGGTTCCCT 62.699 66.667 10.51 10.51 39.51 4.20
301 302 4.144703 GAGGCGACGAGGGTTCCC 62.145 72.222 0.00 0.00 0.00 3.97
302 303 4.144703 GGAGGCGACGAGGGTTCC 62.145 72.222 0.00 0.00 0.00 3.62
303 304 4.144703 GGGAGGCGACGAGGGTTC 62.145 72.222 0.00 0.00 0.00 3.62
304 305 3.292481 TAGGGAGGCGACGAGGGTT 62.292 63.158 0.00 0.00 0.00 4.11
305 306 3.717924 CTAGGGAGGCGACGAGGGT 62.718 68.421 0.00 0.00 0.00 4.34
306 307 2.700407 ATCTAGGGAGGCGACGAGGG 62.700 65.000 0.00 0.00 0.00 4.30
307 308 1.228306 ATCTAGGGAGGCGACGAGG 60.228 63.158 0.00 0.00 0.00 4.63
308 309 1.570347 CGATCTAGGGAGGCGACGAG 61.570 65.000 0.00 0.00 0.00 4.18
309 310 1.597302 CGATCTAGGGAGGCGACGA 60.597 63.158 0.00 0.00 0.00 4.20
310 311 2.947542 CGATCTAGGGAGGCGACG 59.052 66.667 0.00 0.00 0.00 5.12
311 312 2.646143 GCGATCTAGGGAGGCGAC 59.354 66.667 0.00 0.00 0.00 5.19
312 313 2.597805 GGCGATCTAGGGAGGCGA 60.598 66.667 0.00 0.00 0.00 5.54
313 314 2.203771 AAGGCGATCTAGGGAGGCG 61.204 63.158 0.00 0.00 0.00 5.52
314 315 1.115930 TCAAGGCGATCTAGGGAGGC 61.116 60.000 0.00 0.00 0.00 4.70
315 316 1.548269 GATCAAGGCGATCTAGGGAGG 59.452 57.143 0.00 0.00 46.16 4.30
324 325 3.741388 CGGAAAAGTAGGATCAAGGCGAT 60.741 47.826 0.00 0.00 36.91 4.58
325 326 2.418197 CGGAAAAGTAGGATCAAGGCGA 60.418 50.000 0.00 0.00 0.00 5.54
326 327 1.933853 CGGAAAAGTAGGATCAAGGCG 59.066 52.381 0.00 0.00 0.00 5.52
327 328 2.289565 CCGGAAAAGTAGGATCAAGGC 58.710 52.381 0.00 0.00 0.00 4.35
328 329 2.421529 CCCCGGAAAAGTAGGATCAAGG 60.422 54.545 0.73 0.00 0.00 3.61
329 330 2.421529 CCCCCGGAAAAGTAGGATCAAG 60.422 54.545 0.73 0.00 0.00 3.02
330 331 1.562475 CCCCCGGAAAAGTAGGATCAA 59.438 52.381 0.73 0.00 0.00 2.57
331 332 1.209621 CCCCCGGAAAAGTAGGATCA 58.790 55.000 0.73 0.00 0.00 2.92
332 333 0.179026 GCCCCCGGAAAAGTAGGATC 60.179 60.000 0.73 0.00 0.00 3.36
333 334 0.917333 TGCCCCCGGAAAAGTAGGAT 60.917 55.000 0.73 0.00 0.00 3.24
334 335 1.539372 TGCCCCCGGAAAAGTAGGA 60.539 57.895 0.73 0.00 0.00 2.94
335 336 1.378119 GTGCCCCCGGAAAAGTAGG 60.378 63.158 0.73 0.00 0.00 3.18
336 337 1.378119 GGTGCCCCCGGAAAAGTAG 60.378 63.158 0.73 0.00 0.00 2.57
337 338 2.758434 GGTGCCCCCGGAAAAGTA 59.242 61.111 0.73 0.00 0.00 2.24
338 339 4.295199 GGGTGCCCCCGGAAAAGT 62.295 66.667 0.73 0.00 42.41 2.66
347 348 4.779733 TCTCTCCGAGGGTGCCCC 62.780 72.222 3.17 2.16 45.90 5.80
348 349 3.151022 CTCTCTCCGAGGGTGCCC 61.151 72.222 0.00 0.00 36.06 5.36
349 350 2.043852 TCTCTCTCCGAGGGTGCC 60.044 66.667 0.00 0.00 40.30 5.01
350 351 2.124693 CCTCTCTCTCCGAGGGTGC 61.125 68.421 0.00 0.00 43.47 5.01
351 352 0.465460 CTCCTCTCTCTCCGAGGGTG 60.465 65.000 6.27 0.00 46.43 4.61
352 353 1.641552 CCTCCTCTCTCTCCGAGGGT 61.642 65.000 6.27 0.00 46.43 4.34
353 354 1.150536 CCTCCTCTCTCTCCGAGGG 59.849 68.421 6.27 0.00 46.43 4.30
355 356 1.528309 GGCCTCCTCTCTCTCCGAG 60.528 68.421 0.00 0.00 41.30 4.63
356 357 2.309504 TGGCCTCCTCTCTCTCCGA 61.310 63.158 3.32 0.00 0.00 4.55
357 358 2.124693 GTGGCCTCCTCTCTCTCCG 61.125 68.421 3.32 0.00 0.00 4.63
358 359 1.760480 GGTGGCCTCCTCTCTCTCC 60.760 68.421 16.91 0.00 0.00 3.71
359 360 1.000993 TGGTGGCCTCCTCTCTCTC 59.999 63.158 23.90 0.00 0.00 3.20
360 361 1.305718 GTGGTGGCCTCCTCTCTCT 60.306 63.158 23.90 0.00 0.00 3.10
361 362 2.716017 CGTGGTGGCCTCCTCTCTC 61.716 68.421 23.90 8.87 0.00 3.20
362 363 2.681778 CGTGGTGGCCTCCTCTCT 60.682 66.667 23.90 0.00 0.00 3.10
363 364 2.584391 AACGTGGTGGCCTCCTCTC 61.584 63.158 23.90 13.23 0.00 3.20
364 365 2.526873 AACGTGGTGGCCTCCTCT 60.527 61.111 23.90 8.39 0.00 3.69
365 366 2.358737 CAACGTGGTGGCCTCCTC 60.359 66.667 23.90 19.11 0.00 3.71
366 367 3.953775 CCAACGTGGTGGCCTCCT 61.954 66.667 23.90 1.59 31.35 3.69
368 369 2.193087 ATACCCAACGTGGTGGCCTC 62.193 60.000 3.32 0.00 39.53 4.70
369 370 1.785353 AATACCCAACGTGGTGGCCT 61.785 55.000 3.32 0.00 39.53 5.19
370 371 1.303806 AATACCCAACGTGGTGGCC 60.304 57.895 7.79 0.00 39.53 5.36
371 372 0.606944 TCAATACCCAACGTGGTGGC 60.607 55.000 7.79 0.00 39.53 5.01
372 373 1.448985 CTCAATACCCAACGTGGTGG 58.551 55.000 7.79 3.51 39.53 4.61
373 374 1.002659 TCCTCAATACCCAACGTGGTG 59.997 52.381 7.79 0.00 39.53 4.17
374 375 1.354101 TCCTCAATACCCAACGTGGT 58.646 50.000 2.80 2.80 42.62 4.16
375 376 2.288666 CATCCTCAATACCCAACGTGG 58.711 52.381 0.00 0.00 37.25 4.94
376 377 2.093181 TCCATCCTCAATACCCAACGTG 60.093 50.000 0.00 0.00 0.00 4.49
377 378 2.193127 TCCATCCTCAATACCCAACGT 58.807 47.619 0.00 0.00 0.00 3.99
378 379 3.275617 TTCCATCCTCAATACCCAACG 57.724 47.619 0.00 0.00 0.00 4.10
379 380 6.544928 AAAATTCCATCCTCAATACCCAAC 57.455 37.500 0.00 0.00 0.00 3.77
401 402 9.344772 TGTCCATTACTTTTGTAGCTTCTAAAA 57.655 29.630 0.00 0.00 36.14 1.52
402 403 8.780249 GTGTCCATTACTTTTGTAGCTTCTAAA 58.220 33.333 0.00 0.00 36.14 1.85
403 404 7.117236 CGTGTCCATTACTTTTGTAGCTTCTAA 59.883 37.037 0.00 0.00 36.14 2.10
404 405 6.588756 CGTGTCCATTACTTTTGTAGCTTCTA 59.411 38.462 0.00 0.00 36.14 2.10
405 406 5.408604 CGTGTCCATTACTTTTGTAGCTTCT 59.591 40.000 0.00 0.00 36.14 2.85
406 407 5.178809 ACGTGTCCATTACTTTTGTAGCTTC 59.821 40.000 0.00 0.00 36.14 3.86
407 408 5.049680 CACGTGTCCATTACTTTTGTAGCTT 60.050 40.000 7.58 0.00 36.14 3.74
408 409 4.451096 CACGTGTCCATTACTTTTGTAGCT 59.549 41.667 7.58 0.00 36.14 3.32
409 410 4.449743 TCACGTGTCCATTACTTTTGTAGC 59.550 41.667 16.51 0.00 36.14 3.58
410 411 5.388061 CGTCACGTGTCCATTACTTTTGTAG 60.388 44.000 16.51 0.00 36.14 2.74
411 412 4.445052 CGTCACGTGTCCATTACTTTTGTA 59.555 41.667 16.51 0.00 0.00 2.41
412 413 3.246699 CGTCACGTGTCCATTACTTTTGT 59.753 43.478 16.51 0.00 0.00 2.83
413 414 3.246699 ACGTCACGTGTCCATTACTTTTG 59.753 43.478 16.51 0.00 39.18 2.44
414 415 3.460103 ACGTCACGTGTCCATTACTTTT 58.540 40.909 16.51 0.00 39.18 2.27
415 416 3.102052 ACGTCACGTGTCCATTACTTT 57.898 42.857 16.51 0.00 39.18 2.66
416 417 2.806608 ACGTCACGTGTCCATTACTT 57.193 45.000 16.51 0.00 39.18 2.24
427 428 0.601558 ATAAGTGCCTCACGTCACGT 59.398 50.000 0.00 0.00 42.36 4.49
428 429 1.269166 GATAAGTGCCTCACGTCACG 58.731 55.000 0.00 0.00 39.64 4.35
429 430 2.363788 TGATAAGTGCCTCACGTCAC 57.636 50.000 0.00 0.00 39.64 3.67
430 431 3.610040 AATGATAAGTGCCTCACGTCA 57.390 42.857 0.00 5.65 39.64 4.35
431 432 5.348986 TCTAAATGATAAGTGCCTCACGTC 58.651 41.667 0.00 0.00 39.64 4.34
432 433 5.339008 TCTAAATGATAAGTGCCTCACGT 57.661 39.130 0.00 0.00 39.64 4.49
433 434 6.662414 TTTCTAAATGATAAGTGCCTCACG 57.338 37.500 0.00 0.00 39.64 4.35
457 458 9.185680 GGTGGTTATTGGTGTTCTTCTAATATT 57.814 33.333 0.00 0.00 0.00 1.28
458 459 8.557450 AGGTGGTTATTGGTGTTCTTCTAATAT 58.443 33.333 0.00 0.00 0.00 1.28
459 460 7.924541 AGGTGGTTATTGGTGTTCTTCTAATA 58.075 34.615 0.00 0.00 0.00 0.98
460 461 6.790319 AGGTGGTTATTGGTGTTCTTCTAAT 58.210 36.000 0.00 0.00 0.00 1.73
486 487 3.721087 TCCCCAAAAGATCTCTTCCAC 57.279 47.619 0.00 0.00 34.61 4.02
497 498 3.439857 TCTCCATCAGTTCCCCAAAAG 57.560 47.619 0.00 0.00 0.00 2.27
501 502 2.268796 TCATCTCCATCAGTTCCCCA 57.731 50.000 0.00 0.00 0.00 4.96
554 555 5.248870 ACTGTTTGTTGATGGTCAAAGAC 57.751 39.130 0.00 0.00 38.22 3.01
647 648 2.444388 TCCAGCCAATTGCCATCTATCT 59.556 45.455 0.00 0.00 42.71 1.98
693 694 4.293415 CAAAGGAACACAAATCAGCTCAC 58.707 43.478 0.00 0.00 0.00 3.51
695 696 3.311966 GCAAAGGAACACAAATCAGCTC 58.688 45.455 0.00 0.00 0.00 4.09
732 733 1.156736 CTCGCGTGATTTTTCCCTGT 58.843 50.000 5.77 0.00 0.00 4.00
738 739 0.727398 GCCTAGCTCGCGTGATTTTT 59.273 50.000 13.13 0.00 0.00 1.94
752 753 3.376546 GCAAGGAAGAACAGATTGCCTAG 59.623 47.826 0.00 0.00 40.20 3.02
755 756 1.135575 CGCAAGGAAGAACAGATTGCC 60.136 52.381 2.93 0.00 42.47 4.52
756 757 1.730446 GCGCAAGGAAGAACAGATTGC 60.730 52.381 0.30 0.00 42.12 3.56
757 758 1.536766 TGCGCAAGGAAGAACAGATTG 59.463 47.619 8.16 0.00 38.28 2.67
758 759 1.896220 TGCGCAAGGAAGAACAGATT 58.104 45.000 8.16 0.00 38.28 2.40
784 786 0.115349 ATAGGGAGAGGGGTGATCGG 59.885 60.000 0.00 0.00 0.00 4.18
791 793 1.479368 GCAGCAGATAGGGAGAGGGG 61.479 65.000 0.00 0.00 0.00 4.79
795 797 0.467384 GCTTGCAGCAGATAGGGAGA 59.533 55.000 0.00 0.00 41.89 3.71
807 816 0.806102 GCTGCCATGAATGCTTGCAG 60.806 55.000 11.98 11.98 32.17 4.41
809 818 1.082117 GTGCTGCCATGAATGCTTGC 61.082 55.000 0.00 0.00 0.00 4.01
813 822 0.174845 ACATGTGCTGCCATGAATGC 59.825 50.000 26.77 0.00 43.99 3.56
843 852 7.273164 CCAGAGAATCAATCGATCTTCTTATCG 59.727 40.741 15.08 0.00 43.66 2.92
870 880 2.923121 TGATAATCACCTGAAGCTGGC 58.077 47.619 0.00 0.00 0.00 4.85
873 883 9.228949 GATCATTAATGATAATCACCTGAAGCT 57.771 33.333 26.97 4.10 46.84 3.74
874 884 9.228949 AGATCATTAATGATAATCACCTGAAGC 57.771 33.333 26.97 12.28 46.84 3.86
876 886 9.006839 GCAGATCATTAATGATAATCACCTGAA 57.993 33.333 29.05 6.84 46.84 3.02
877 887 7.332678 CGCAGATCATTAATGATAATCACCTGA 59.667 37.037 29.05 7.73 46.84 3.86
878 888 7.332678 TCGCAGATCATTAATGATAATCACCTG 59.667 37.037 26.97 25.56 46.84 4.00
879 889 7.332926 GTCGCAGATCATTAATGATAATCACCT 59.667 37.037 26.97 17.08 46.84 4.00
880 890 7.459486 GTCGCAGATCATTAATGATAATCACC 58.541 38.462 26.97 15.35 46.84 4.02
881 891 7.062255 TCGTCGCAGATCATTAATGATAATCAC 59.938 37.037 26.97 18.55 46.84 3.06
882 892 7.090173 TCGTCGCAGATCATTAATGATAATCA 58.910 34.615 26.97 10.61 46.84 2.57
883 893 7.486232 TCTCGTCGCAGATCATTAATGATAATC 59.514 37.037 26.97 17.55 46.84 1.75
884 894 7.315890 TCTCGTCGCAGATCATTAATGATAAT 58.684 34.615 26.97 17.45 46.84 1.28
885 895 6.677913 TCTCGTCGCAGATCATTAATGATAA 58.322 36.000 26.97 10.66 46.84 1.75
886 896 6.254281 TCTCGTCGCAGATCATTAATGATA 57.746 37.500 26.97 11.53 46.84 2.15
887 897 7.379467 CGATCTCGTCGCAGATCATTAATGAT 61.379 42.308 27.19 27.19 46.51 2.45
888 898 4.568152 TCTCGTCGCAGATCATTAATGA 57.432 40.909 20.07 20.07 40.67 2.57
889 899 4.029972 CGATCTCGTCGCAGATCATTAATG 59.970 45.833 22.83 9.29 46.51 1.90
890 900 4.162072 CGATCTCGTCGCAGATCATTAAT 58.838 43.478 22.83 0.00 46.51 1.40
891 901 3.555518 CGATCTCGTCGCAGATCATTAA 58.444 45.455 22.83 0.00 46.51 1.40
892 902 3.188895 CGATCTCGTCGCAGATCATTA 57.811 47.619 22.83 0.00 46.51 1.90
893 903 2.043495 CGATCTCGTCGCAGATCATT 57.957 50.000 22.83 2.27 46.51 2.57
894 904 3.763414 CGATCTCGTCGCAGATCAT 57.237 52.632 22.83 2.53 46.51 2.45
938 948 1.160137 GCGAACTGCAACCTCAAGAT 58.840 50.000 0.00 0.00 45.45 2.40
975 985 2.185350 CGAGCACCGCCAGAATCT 59.815 61.111 0.00 0.00 0.00 2.40
988 998 0.824759 ACTACCATCCAAGGACGAGC 59.175 55.000 0.00 0.00 0.00 5.03
989 999 1.137086 CCACTACCATCCAAGGACGAG 59.863 57.143 0.00 0.00 0.00 4.18
990 1000 1.191535 CCACTACCATCCAAGGACGA 58.808 55.000 0.00 0.00 0.00 4.20
991 1001 1.137086 CTCCACTACCATCCAAGGACG 59.863 57.143 0.00 0.00 0.00 4.79
992 1002 2.432510 CTCTCCACTACCATCCAAGGAC 59.567 54.545 0.00 0.00 0.00 3.85
1279 1324 2.233922 ACATCTCTCGAACAACCGGATT 59.766 45.455 9.46 0.00 0.00 3.01
1298 1343 2.031012 CTGCTCCTGCCAACGACA 59.969 61.111 0.00 0.00 38.71 4.35
1300 1345 3.889134 CTGCTGCTCCTGCCAACGA 62.889 63.158 0.00 0.00 38.71 3.85
1314 1359 0.105555 CATCTCCTCCTCCTCCTGCT 60.106 60.000 0.00 0.00 0.00 4.24
1315 1360 1.120795 CCATCTCCTCCTCCTCCTGC 61.121 65.000 0.00 0.00 0.00 4.85
1316 1361 0.471591 CCCATCTCCTCCTCCTCCTG 60.472 65.000 0.00 0.00 0.00 3.86
1328 1373 0.829602 TGATCCCTCGCTCCCATCTC 60.830 60.000 0.00 0.00 0.00 2.75
1332 1377 2.811514 GCATGATCCCTCGCTCCCA 61.812 63.158 0.00 0.00 0.00 4.37
1356 1401 3.540014 CTGAGCTGCGCGTTCTCG 61.540 66.667 8.43 5.18 40.37 4.04
1467 1521 3.632080 CCGGGGTAGTGTGGCACA 61.632 66.667 17.96 17.96 36.74 4.57
1488 1542 1.016130 CGCTGTGCTGTAGGTTCAGG 61.016 60.000 0.00 0.00 36.12 3.86
1833 1890 4.752879 ACGTACATGGCGGCGCTT 62.753 61.111 32.30 16.94 0.00 4.68
1959 2016 3.665675 GACTGGCCGCTGTCCGAAT 62.666 63.158 10.99 0.00 40.02 3.34
1964 2021 4.767255 CCAGGACTGGCCGCTGTC 62.767 72.222 5.27 13.02 44.73 3.51
1983 2040 3.266772 TGTGAATGGCTCCTTGGAAGTAT 59.733 43.478 0.00 0.00 0.00 2.12
2060 2117 2.965147 ACCACCAAAGAAGTTCCCAATG 59.035 45.455 0.00 0.00 0.00 2.82
2108 2169 2.288825 CGTCCTTGAGAAGCTGGTACAA 60.289 50.000 0.00 0.00 38.70 2.41
2428 2489 1.067295 TCAGCCTTCTCCACATGGTT 58.933 50.000 0.00 0.00 36.34 3.67
2461 2522 2.904434 AGGGTACTGGTACTCAAAGTGG 59.096 50.000 12.51 0.00 38.98 4.00
2491 2552 5.554437 AGATCATCTGAACAGCATCATCT 57.446 39.130 0.00 0.00 0.00 2.90
2557 2618 2.234661 CTGATACCTGCCAGTCTTGTGA 59.765 50.000 0.00 0.00 0.00 3.58
2671 2743 3.480505 TGCACCATGGATCATCTAGTG 57.519 47.619 21.47 3.53 0.00 2.74
2708 2780 7.396055 AGGCCTTACTAAGCAAAATAAATGACA 59.604 33.333 0.00 0.00 0.00 3.58
2710 2782 7.954666 AGGCCTTACTAAGCAAAATAAATGA 57.045 32.000 0.00 0.00 0.00 2.57
2726 2798 7.640597 AATTACTACCAAATGAAGGCCTTAC 57.359 36.000 20.54 12.77 0.00 2.34
2788 2861 5.957798 ACAGCATCAATCACCATTACAAAG 58.042 37.500 0.00 0.00 0.00 2.77
3064 3161 4.787563 GCCATGTGCGAAATTCTGACTATG 60.788 45.833 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.