Multiple sequence alignment - TraesCS5D01G384500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G384500 chr5D 100.000 5844 0 0 603 6446 453986664 453992507 0.000000e+00 10792
1 TraesCS5D01G384500 chr5D 100.000 250 0 0 1 250 453986062 453986311 4.550000e-126 462
2 TraesCS5D01G384500 chr5A 91.299 2988 207 24 2714 5680 573042076 573045031 0.000000e+00 4028
3 TraesCS5D01G384500 chr5A 85.843 2112 153 74 610 2663 573039821 573041844 0.000000e+00 2109
4 TraesCS5D01G384500 chr5A 93.226 620 20 14 5833 6440 573045040 573045649 0.000000e+00 893
5 TraesCS5D01G384500 chr5A 88.073 109 3 3 2617 2722 573041864 573041965 3.160000e-23 121
6 TraesCS5D01G384500 chr5B 93.044 2746 159 16 2941 5675 554727448 554730172 0.000000e+00 3984
7 TraesCS5D01G384500 chr5B 87.431 1265 91 34 1372 2610 554725982 554727204 0.000000e+00 1393
8 TraesCS5D01G384500 chr5B 91.410 780 35 19 5669 6440 554750745 554751500 0.000000e+00 1040
9 TraesCS5D01G384500 chr5B 86.086 654 41 17 653 1285 554725317 554725941 0.000000e+00 658
10 TraesCS5D01G384500 chr5B 93.927 247 13 2 2643 2888 554727208 554727453 7.890000e-99 372
11 TraesCS5D01G384500 chr5B 89.908 218 20 1 1 218 210179971 210179756 4.920000e-71 279
12 TraesCS5D01G384500 chr5B 87.069 232 13 2 2 218 404178768 404178997 4.990000e-61 246
13 TraesCS5D01G384500 chr7D 89.732 224 20 2 2 225 285265181 285265401 3.800000e-72 283
14 TraesCS5D01G384500 chr1B 89.450 218 21 1 1 218 669787227 669787012 2.290000e-69 274
15 TraesCS5D01G384500 chr6A 88.532 218 23 1 1 218 166876530 166876315 4.960000e-66 263
16 TraesCS5D01G384500 chr4B 88.479 217 22 2 2 218 393164597 393164810 6.410000e-65 259
17 TraesCS5D01G384500 chr4B 83.333 246 23 6 1 231 660246069 660246311 1.820000e-50 211
18 TraesCS5D01G384500 chr6B 87.554 233 12 2 1 218 6298722 6298952 2.980000e-63 254
19 TraesCS5D01G384500 chrUn 87.671 219 22 4 1 218 49147518 49147304 3.860000e-62 250
20 TraesCS5D01G384500 chr2D 87.069 232 13 2 2 218 374123226 374123455 4.990000e-61 246
21 TraesCS5D01G384500 chr4D 85.837 233 16 4 1 218 17233301 17233071 1.400000e-56 231
22 TraesCS5D01G384500 chr6D 80.488 246 25 8 1 229 147242229 147241990 4.000000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G384500 chr5D 453986062 453992507 6445 False 5627.00 10792 100.00000 1 6446 2 chr5D.!!$F1 6445
1 TraesCS5D01G384500 chr5A 573039821 573045649 5828 False 1787.75 4028 89.61025 610 6440 4 chr5A.!!$F1 5830
2 TraesCS5D01G384500 chr5B 554725317 554730172 4855 False 1601.75 3984 90.12200 653 5675 4 chr5B.!!$F3 5022
3 TraesCS5D01G384500 chr5B 554750745 554751500 755 False 1040.00 1040 91.41000 5669 6440 1 chr5B.!!$F2 771


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.031314 CACGCCTCGTAGATGCTGAT 59.969 55.0 0.00 0.00 45.91 2.90 F
1142 1190 0.387878 GAGCTCATACGGATGGAGCG 60.388 60.0 19.67 5.09 39.35 5.03 F
1283 1332 0.026156 TCATTGCTTACAATCGCGCG 59.974 50.0 26.76 26.76 44.83 6.86 F
1355 1406 0.106719 GGGGCCTCCATTTCGATCAA 60.107 55.0 0.84 0.00 35.00 2.57 F
1453 1504 0.320946 CACCAAATTGGGCTTGCAGG 60.321 55.0 17.27 0.00 43.37 4.85 F
3240 3540 0.761187 TTGAGCTCTGTCAAGTGCCT 59.239 50.0 16.19 0.00 42.66 4.75 F
4308 4616 0.178873 ACCTGGTGGTGAGGTGGTAT 60.179 55.0 0.00 0.00 46.51 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 1312 0.026156 CGCGCGATTGTAAGCAATGA 59.974 50.000 28.94 0.0 44.61 2.57 R
2698 2868 0.630673 AAGTTGGGGGCTATGATGCA 59.369 50.000 0.00 0.0 34.04 3.96 R
2718 2888 1.495878 CGATCAGCACATGTAGGCTC 58.504 55.000 7.67 0.0 38.56 4.70 R
3295 3595 0.322975 ATACGATCCCCATGCTCTGC 59.677 55.000 0.00 0.0 0.00 4.26 R
3398 3698 6.421202 GGAATAACTAGCAACAGAGGATAACG 59.579 42.308 0.00 0.0 0.00 3.18 R
5161 5469 0.702316 TTGAAAGGGGAGGGGCTAAC 59.298 55.000 0.00 0.0 0.00 2.34 R
5821 6141 0.036105 TCGCTACTCACACTACGGGA 60.036 55.000 0.00 0.0 0.00 5.14 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.959596 GAGCTCGCGCCATCTCCC 62.960 72.222 0.00 0.00 36.60 4.30
20 21 4.598894 CTCGCGCCATCTCCCTGG 62.599 72.222 0.00 0.00 39.45 4.45
22 23 4.899239 CGCGCCATCTCCCTGGTC 62.899 72.222 0.00 0.00 38.63 4.02
23 24 4.899239 GCGCCATCTCCCTGGTCG 62.899 72.222 0.00 0.00 38.63 4.79
24 25 4.899239 CGCCATCTCCCTGGTCGC 62.899 72.222 0.00 0.00 38.63 5.19
25 26 3.785859 GCCATCTCCCTGGTCGCA 61.786 66.667 0.00 0.00 38.63 5.10
26 27 2.187946 CCATCTCCCTGGTCGCAC 59.812 66.667 0.00 0.00 0.00 5.34
27 28 2.202797 CATCTCCCTGGTCGCACG 60.203 66.667 0.00 0.00 0.00 5.34
28 29 2.362503 ATCTCCCTGGTCGCACGA 60.363 61.111 0.00 0.00 0.00 4.35
29 30 2.418910 ATCTCCCTGGTCGCACGAG 61.419 63.158 0.00 0.00 0.00 4.18
30 31 4.135153 CTCCCTGGTCGCACGAGG 62.135 72.222 9.38 9.38 42.88 4.63
31 32 4.671590 TCCCTGGTCGCACGAGGA 62.672 66.667 15.47 0.00 45.67 3.71
32 33 4.135153 CCCTGGTCGCACGAGGAG 62.135 72.222 15.47 5.63 45.67 3.69
33 34 3.062466 CCTGGTCGCACGAGGAGA 61.062 66.667 10.43 0.00 45.67 3.71
34 35 2.487428 CTGGTCGCACGAGGAGAG 59.513 66.667 0.00 0.00 0.00 3.20
35 36 2.033602 TGGTCGCACGAGGAGAGA 59.966 61.111 0.00 0.00 0.00 3.10
36 37 1.587043 CTGGTCGCACGAGGAGAGAA 61.587 60.000 0.00 0.00 0.00 2.87
37 38 1.137825 GGTCGCACGAGGAGAGAAG 59.862 63.158 0.00 0.00 0.00 2.85
38 39 1.515304 GTCGCACGAGGAGAGAAGC 60.515 63.158 0.00 0.00 0.00 3.86
39 40 2.578178 CGCACGAGGAGAGAAGCG 60.578 66.667 0.00 0.00 39.17 4.68
40 41 2.883253 GCACGAGGAGAGAAGCGC 60.883 66.667 0.00 0.00 0.00 5.92
41 42 2.578178 CACGAGGAGAGAAGCGCG 60.578 66.667 0.00 0.00 0.00 6.86
42 43 3.056938 ACGAGGAGAGAAGCGCGT 61.057 61.111 8.43 0.00 0.00 6.01
43 44 2.277628 CGAGGAGAGAAGCGCGTC 60.278 66.667 15.94 15.94 0.00 5.19
44 45 2.277628 GAGGAGAGAAGCGCGTCG 60.278 66.667 17.57 0.00 0.00 5.12
73 74 3.877357 CTCGCGAGCTACTGCCGA 61.877 66.667 25.07 0.00 40.80 5.54
74 75 3.187699 CTCGCGAGCTACTGCCGAT 62.188 63.158 25.07 0.00 40.80 4.18
75 76 2.278857 CGCGAGCTACTGCCGATT 60.279 61.111 0.00 0.00 40.80 3.34
76 77 2.296480 CGCGAGCTACTGCCGATTC 61.296 63.158 0.00 0.00 40.80 2.52
77 78 2.296480 GCGAGCTACTGCCGATTCG 61.296 63.158 0.00 0.00 40.80 3.34
95 96 3.647771 GGCGTTTCCCCTGGGTCT 61.648 66.667 12.71 0.00 36.47 3.85
96 97 2.359975 GCGTTTCCCCTGGGTCTG 60.360 66.667 12.71 0.00 36.47 3.51
97 98 2.351276 CGTTTCCCCTGGGTCTGG 59.649 66.667 12.71 0.00 36.47 3.86
98 99 2.035783 GTTTCCCCTGGGTCTGGC 59.964 66.667 12.71 0.00 36.47 4.85
99 100 3.264845 TTTCCCCTGGGTCTGGCC 61.265 66.667 12.71 0.00 36.47 5.36
100 101 3.829311 TTTCCCCTGGGTCTGGCCT 62.829 63.158 12.71 0.00 37.43 5.19
104 105 3.406200 CCTGGGTCTGGCCTGGAG 61.406 72.222 10.07 0.00 37.43 3.86
105 106 2.284921 CTGGGTCTGGCCTGGAGA 60.285 66.667 10.07 0.00 37.43 3.71
106 107 1.692042 CTGGGTCTGGCCTGGAGAT 60.692 63.158 10.07 0.00 37.43 2.75
107 108 1.980784 CTGGGTCTGGCCTGGAGATG 61.981 65.000 10.07 0.00 37.43 2.90
108 109 2.191641 GGTCTGGCCTGGAGATGC 59.808 66.667 10.07 0.00 0.00 3.91
109 110 2.373707 GGTCTGGCCTGGAGATGCT 61.374 63.158 10.07 0.00 0.00 3.79
110 111 1.606531 GTCTGGCCTGGAGATGCTT 59.393 57.895 10.07 0.00 0.00 3.91
111 112 0.034670 GTCTGGCCTGGAGATGCTTT 60.035 55.000 10.07 0.00 0.00 3.51
112 113 1.210478 GTCTGGCCTGGAGATGCTTTA 59.790 52.381 10.07 0.00 0.00 1.85
113 114 1.915489 TCTGGCCTGGAGATGCTTTAA 59.085 47.619 10.07 0.00 0.00 1.52
114 115 2.092753 TCTGGCCTGGAGATGCTTTAAG 60.093 50.000 10.07 0.00 0.00 1.85
115 116 1.064463 TGGCCTGGAGATGCTTTAAGG 60.064 52.381 3.32 0.00 0.00 2.69
116 117 1.064389 GGCCTGGAGATGCTTTAAGGT 60.064 52.381 0.00 0.00 0.00 3.50
117 118 2.621668 GGCCTGGAGATGCTTTAAGGTT 60.622 50.000 0.00 0.00 0.00 3.50
118 119 2.685388 GCCTGGAGATGCTTTAAGGTTC 59.315 50.000 0.00 0.00 0.00 3.62
119 120 2.939103 CCTGGAGATGCTTTAAGGTTCG 59.061 50.000 0.00 0.00 0.00 3.95
120 121 3.600388 CTGGAGATGCTTTAAGGTTCGT 58.400 45.455 0.00 0.00 0.00 3.85
121 122 3.334691 TGGAGATGCTTTAAGGTTCGTG 58.665 45.455 0.00 0.00 0.00 4.35
122 123 2.096013 GGAGATGCTTTAAGGTTCGTGC 59.904 50.000 0.00 0.00 0.00 5.34
123 124 2.084546 AGATGCTTTAAGGTTCGTGCC 58.915 47.619 0.00 0.00 0.00 5.01
124 125 1.810151 GATGCTTTAAGGTTCGTGCCA 59.190 47.619 0.00 0.00 0.00 4.92
125 126 1.904287 TGCTTTAAGGTTCGTGCCAT 58.096 45.000 0.00 0.00 0.00 4.40
126 127 1.539388 TGCTTTAAGGTTCGTGCCATG 59.461 47.619 0.00 0.00 0.00 3.66
127 128 1.732405 GCTTTAAGGTTCGTGCCATGC 60.732 52.381 0.00 0.00 0.00 4.06
128 129 0.519519 TTTAAGGTTCGTGCCATGCG 59.480 50.000 0.00 0.00 0.00 4.73
129 130 1.302383 TTAAGGTTCGTGCCATGCGG 61.302 55.000 0.00 0.00 0.00 5.69
144 145 3.784412 CGGGCCGCACAGTAAACG 61.784 66.667 15.42 0.00 0.00 3.60
145 146 2.667199 GGGCCGCACAGTAAACGT 60.667 61.111 0.00 0.00 0.00 3.99
146 147 1.374505 GGGCCGCACAGTAAACGTA 60.375 57.895 0.00 0.00 0.00 3.57
147 148 1.356527 GGGCCGCACAGTAAACGTAG 61.357 60.000 0.00 0.00 0.00 3.51
148 149 0.388907 GGCCGCACAGTAAACGTAGA 60.389 55.000 0.00 0.00 0.00 2.59
149 150 0.712222 GCCGCACAGTAAACGTAGAC 59.288 55.000 0.00 0.00 0.00 2.59
150 151 1.931709 GCCGCACAGTAAACGTAGACA 60.932 52.381 0.00 0.00 0.00 3.41
151 152 2.396601 CCGCACAGTAAACGTAGACAA 58.603 47.619 0.00 0.00 0.00 3.18
152 153 2.154389 CCGCACAGTAAACGTAGACAAC 59.846 50.000 0.00 0.00 0.00 3.32
153 154 2.154389 CGCACAGTAAACGTAGACAACC 59.846 50.000 0.00 0.00 0.00 3.77
154 155 3.125316 GCACAGTAAACGTAGACAACCA 58.875 45.455 0.00 0.00 0.00 3.67
155 156 3.556775 GCACAGTAAACGTAGACAACCAA 59.443 43.478 0.00 0.00 0.00 3.67
156 157 4.034279 GCACAGTAAACGTAGACAACCAAA 59.966 41.667 0.00 0.00 0.00 3.28
157 158 5.495502 CACAGTAAACGTAGACAACCAAAC 58.504 41.667 0.00 0.00 0.00 2.93
158 159 4.268405 ACAGTAAACGTAGACAACCAAACG 59.732 41.667 0.00 0.00 40.99 3.60
159 160 3.803778 AGTAAACGTAGACAACCAAACGG 59.196 43.478 0.00 0.00 39.57 4.44
160 161 1.585297 AACGTAGACAACCAAACGGG 58.415 50.000 0.00 0.00 44.81 5.28
173 174 3.649073 CCAAACGGGTCATTTTCTTTCC 58.351 45.455 0.00 0.00 0.00 3.13
174 175 3.305110 CAAACGGGTCATTTTCTTTCCG 58.695 45.455 0.00 0.00 42.69 4.30
175 176 0.879090 ACGGGTCATTTTCTTTCCGC 59.121 50.000 0.00 0.00 40.95 5.54
176 177 0.179200 CGGGTCATTTTCTTTCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
177 178 0.456142 GGGTCATTTTCTTTCCGCGC 60.456 55.000 0.00 0.00 0.00 6.86
178 179 0.793104 GGTCATTTTCTTTCCGCGCG 60.793 55.000 25.67 25.67 0.00 6.86
179 180 0.165079 GTCATTTTCTTTCCGCGCGA 59.835 50.000 34.63 15.16 0.00 5.87
180 181 0.442310 TCATTTTCTTTCCGCGCGAG 59.558 50.000 34.63 21.49 0.00 5.03
200 201 2.119801 CCAGACTGGGCCATATATGC 57.880 55.000 14.26 3.21 32.67 3.14
201 202 1.352017 CCAGACTGGGCCATATATGCA 59.648 52.381 14.26 0.00 32.67 3.96
202 203 2.617276 CCAGACTGGGCCATATATGCAG 60.617 54.545 14.26 11.34 32.67 4.41
203 204 1.632409 AGACTGGGCCATATATGCAGG 59.368 52.381 6.72 0.00 0.00 4.85
212 213 3.981211 CCATATATGCAGGCAACCAAAC 58.019 45.455 7.24 0.00 37.17 2.93
213 214 3.384146 CCATATATGCAGGCAACCAAACA 59.616 43.478 7.24 0.00 37.17 2.83
214 215 4.362279 CATATATGCAGGCAACCAAACAC 58.638 43.478 0.00 0.00 37.17 3.32
215 216 0.595588 TATGCAGGCAACCAAACACG 59.404 50.000 0.00 0.00 37.17 4.49
216 217 2.658268 GCAGGCAACCAAACACGC 60.658 61.111 0.00 0.00 37.17 5.34
217 218 2.027460 CAGGCAACCAAACACGCC 59.973 61.111 0.00 0.00 45.23 5.68
219 220 2.335011 GGCAACCAAACACGCCTC 59.665 61.111 0.00 0.00 41.50 4.70
220 221 2.051345 GCAACCAAACACGCCTCG 60.051 61.111 0.00 0.00 0.00 4.63
221 222 2.830285 GCAACCAAACACGCCTCGT 61.830 57.895 0.00 0.00 42.36 4.18
222 223 1.500512 GCAACCAAACACGCCTCGTA 61.501 55.000 0.00 0.00 38.32 3.43
223 224 0.511221 CAACCAAACACGCCTCGTAG 59.489 55.000 0.00 0.00 38.32 3.51
224 225 0.390124 AACCAAACACGCCTCGTAGA 59.610 50.000 0.00 0.00 38.32 2.59
225 226 0.606604 ACCAAACACGCCTCGTAGAT 59.393 50.000 0.00 0.00 38.32 1.98
226 227 0.999406 CCAAACACGCCTCGTAGATG 59.001 55.000 0.00 0.00 38.32 2.90
227 228 0.370273 CAAACACGCCTCGTAGATGC 59.630 55.000 0.00 0.00 44.65 3.91
228 229 0.246635 AAACACGCCTCGTAGATGCT 59.753 50.000 0.00 0.00 45.91 3.79
229 230 0.458543 AACACGCCTCGTAGATGCTG 60.459 55.000 0.00 0.00 45.91 4.41
230 231 1.313091 ACACGCCTCGTAGATGCTGA 61.313 55.000 0.00 0.00 45.91 4.26
231 232 0.031314 CACGCCTCGTAGATGCTGAT 59.969 55.000 0.00 0.00 45.91 2.90
232 233 1.266989 CACGCCTCGTAGATGCTGATA 59.733 52.381 0.00 0.00 45.91 2.15
233 234 1.537638 ACGCCTCGTAGATGCTGATAG 59.462 52.381 0.00 0.00 45.91 2.08
234 235 1.730772 CGCCTCGTAGATGCTGATAGC 60.731 57.143 0.00 0.00 45.91 2.97
235 236 1.543802 GCCTCGTAGATGCTGATAGCT 59.456 52.381 2.24 0.00 44.69 3.32
236 237 2.670789 GCCTCGTAGATGCTGATAGCTG 60.671 54.545 0.00 0.00 44.69 4.24
237 238 2.556189 CCTCGTAGATGCTGATAGCTGT 59.444 50.000 0.00 0.00 42.97 4.40
238 239 3.563508 CTCGTAGATGCTGATAGCTGTG 58.436 50.000 0.00 0.00 42.97 3.66
239 240 3.214328 TCGTAGATGCTGATAGCTGTGA 58.786 45.455 0.00 0.00 42.97 3.58
240 241 3.251972 TCGTAGATGCTGATAGCTGTGAG 59.748 47.826 0.00 0.00 42.97 3.51
241 242 3.004210 CGTAGATGCTGATAGCTGTGAGT 59.996 47.826 0.00 0.00 42.97 3.41
242 243 4.498850 CGTAGATGCTGATAGCTGTGAGTT 60.499 45.833 0.00 0.00 42.97 3.01
243 244 4.484537 AGATGCTGATAGCTGTGAGTTT 57.515 40.909 0.00 0.00 42.97 2.66
244 245 4.440880 AGATGCTGATAGCTGTGAGTTTC 58.559 43.478 0.00 0.00 42.97 2.78
245 246 3.683365 TGCTGATAGCTGTGAGTTTCA 57.317 42.857 0.00 0.00 42.97 2.69
246 247 4.006780 TGCTGATAGCTGTGAGTTTCAA 57.993 40.909 0.00 0.00 42.97 2.69
247 248 4.388485 TGCTGATAGCTGTGAGTTTCAAA 58.612 39.130 0.00 0.00 42.97 2.69
248 249 4.821260 TGCTGATAGCTGTGAGTTTCAAAA 59.179 37.500 0.00 0.00 42.97 2.44
249 250 5.299028 TGCTGATAGCTGTGAGTTTCAAAAA 59.701 36.000 0.00 0.00 42.97 1.94
666 667 0.540830 ACGCCACTCCACTTCTCTCT 60.541 55.000 0.00 0.00 0.00 3.10
706 707 1.962306 TAACCCAAACGGCAGTCGC 60.962 57.895 0.00 0.00 43.89 5.19
771 782 2.505777 CAGAGACGCCGTGAGCAG 60.506 66.667 0.00 0.00 44.04 4.24
785 796 2.050077 GCAGCTTTGGTTCCGCAC 60.050 61.111 0.00 0.00 0.00 5.34
877 903 1.877443 ACCACCACGCAACAATAAGAC 59.123 47.619 0.00 0.00 0.00 3.01
880 906 2.222213 CACCACGCAACAATAAGACGAA 59.778 45.455 0.00 0.00 0.00 3.85
887 913 3.725010 GCAACAATAAGACGAAGAAGCCG 60.725 47.826 0.00 0.00 0.00 5.52
1142 1190 0.387878 GAGCTCATACGGATGGAGCG 60.388 60.000 19.67 5.09 39.35 5.03
1175 1223 1.419374 CACAAGTACGGTGACTGCTC 58.581 55.000 13.46 0.00 38.54 4.26
1176 1224 1.000163 CACAAGTACGGTGACTGCTCT 60.000 52.381 13.46 0.00 38.54 4.09
1208 1256 4.012721 ACCCTCTCCCCGCCTTCT 62.013 66.667 0.00 0.00 0.00 2.85
1248 1296 4.062293 TGTGCTTGCGTAAATGTCTTAGT 58.938 39.130 0.00 0.00 0.00 2.24
1256 1304 5.048364 TGCGTAAATGTCTTAGTGGCAAATT 60.048 36.000 0.00 0.00 32.16 1.82
1259 1307 7.413657 GCGTAAATGTCTTAGTGGCAAATTCTA 60.414 37.037 0.00 0.00 32.16 2.10
1260 1308 7.903431 CGTAAATGTCTTAGTGGCAAATTCTAC 59.097 37.037 0.00 0.00 32.16 2.59
1261 1309 6.759497 AATGTCTTAGTGGCAAATTCTACC 57.241 37.500 0.00 0.00 32.16 3.18
1263 1311 4.042311 TGTCTTAGTGGCAAATTCTACCCA 59.958 41.667 0.00 0.00 0.00 4.51
1264 1312 5.193679 GTCTTAGTGGCAAATTCTACCCAT 58.806 41.667 0.00 0.00 0.00 4.00
1265 1313 5.297029 GTCTTAGTGGCAAATTCTACCCATC 59.703 44.000 0.00 0.00 0.00 3.51
1266 1314 3.737559 AGTGGCAAATTCTACCCATCA 57.262 42.857 0.00 0.00 0.00 3.07
1267 1315 4.255510 AGTGGCAAATTCTACCCATCAT 57.744 40.909 0.00 0.00 0.00 2.45
1268 1316 4.613437 AGTGGCAAATTCTACCCATCATT 58.387 39.130 0.00 0.00 0.00 2.57
1269 1317 4.403432 AGTGGCAAATTCTACCCATCATTG 59.597 41.667 0.00 0.00 0.00 2.82
1270 1318 3.132646 TGGCAAATTCTACCCATCATTGC 59.867 43.478 0.00 0.00 40.56 3.56
1272 1320 4.141869 GGCAAATTCTACCCATCATTGCTT 60.142 41.667 7.41 0.00 40.94 3.91
1273 1321 5.068987 GGCAAATTCTACCCATCATTGCTTA 59.931 40.000 7.41 0.00 40.94 3.09
1275 1323 6.405731 GCAAATTCTACCCATCATTGCTTACA 60.406 38.462 0.00 0.00 38.79 2.41
1283 1332 0.026156 TCATTGCTTACAATCGCGCG 59.974 50.000 26.76 26.76 44.83 6.86
1287 1336 2.394136 CTTACAATCGCGCGCGTT 59.606 55.556 46.54 38.35 40.74 4.84
1338 1389 0.462759 GAGCTGGGATTGTCTTCGGG 60.463 60.000 0.00 0.00 0.00 5.14
1339 1390 1.452108 GCTGGGATTGTCTTCGGGG 60.452 63.158 0.00 0.00 0.00 5.73
1340 1391 1.452108 CTGGGATTGTCTTCGGGGC 60.452 63.158 0.00 0.00 0.00 5.80
1341 1392 2.124278 GGGATTGTCTTCGGGGCC 60.124 66.667 0.00 0.00 0.00 5.80
1342 1393 2.680370 GGGATTGTCTTCGGGGCCT 61.680 63.158 0.84 0.00 0.00 5.19
1345 1396 1.910580 GATTGTCTTCGGGGCCTCCA 61.911 60.000 0.84 0.00 34.36 3.86
1350 1401 1.819632 CTTCGGGGCCTCCATTTCG 60.820 63.158 0.84 0.00 34.36 3.46
1351 1402 2.252072 CTTCGGGGCCTCCATTTCGA 62.252 60.000 0.84 0.00 34.36 3.71
1352 1403 1.632018 TTCGGGGCCTCCATTTCGAT 61.632 55.000 0.84 0.00 34.36 3.59
1353 1404 1.598130 CGGGGCCTCCATTTCGATC 60.598 63.158 0.84 0.00 34.36 3.69
1354 1405 1.531748 GGGGCCTCCATTTCGATCA 59.468 57.895 0.84 0.00 35.00 2.92
1355 1406 0.106719 GGGGCCTCCATTTCGATCAA 60.107 55.000 0.84 0.00 35.00 2.57
1356 1407 1.025041 GGGCCTCCATTTCGATCAAC 58.975 55.000 0.84 0.00 0.00 3.18
1357 1408 1.408822 GGGCCTCCATTTCGATCAACT 60.409 52.381 0.84 0.00 0.00 3.16
1358 1409 1.943340 GGCCTCCATTTCGATCAACTC 59.057 52.381 0.00 0.00 0.00 3.01
1359 1410 1.943340 GCCTCCATTTCGATCAACTCC 59.057 52.381 0.00 0.00 0.00 3.85
1360 1411 2.205074 CCTCCATTTCGATCAACTCCG 58.795 52.381 0.00 0.00 0.00 4.63
1361 1412 2.418746 CCTCCATTTCGATCAACTCCGT 60.419 50.000 0.00 0.00 0.00 4.69
1362 1413 3.262420 CTCCATTTCGATCAACTCCGTT 58.738 45.455 0.00 0.00 0.00 4.44
1363 1414 3.259064 TCCATTTCGATCAACTCCGTTC 58.741 45.455 0.00 0.00 0.00 3.95
1364 1415 3.000041 CCATTTCGATCAACTCCGTTCA 59.000 45.455 0.00 0.00 0.00 3.18
1365 1416 3.623060 CCATTTCGATCAACTCCGTTCAT 59.377 43.478 0.00 0.00 0.00 2.57
1366 1417 4.494690 CCATTTCGATCAACTCCGTTCATG 60.495 45.833 0.00 0.00 0.00 3.07
1367 1418 3.313012 TTCGATCAACTCCGTTCATGT 57.687 42.857 0.00 0.00 0.00 3.21
1368 1419 3.313012 TCGATCAACTCCGTTCATGTT 57.687 42.857 0.00 0.00 0.00 2.71
1369 1420 3.659786 TCGATCAACTCCGTTCATGTTT 58.340 40.909 0.00 0.00 0.00 2.83
1370 1421 4.811908 TCGATCAACTCCGTTCATGTTTA 58.188 39.130 0.00 0.00 0.00 2.01
1399 1450 3.401033 TCTTCGGCACTTCATCTTGAA 57.599 42.857 0.00 0.00 34.79 2.69
1400 1451 3.942829 TCTTCGGCACTTCATCTTGAAT 58.057 40.909 0.00 0.00 35.59 2.57
1453 1504 0.320946 CACCAAATTGGGCTTGCAGG 60.321 55.000 17.27 0.00 43.37 4.85
1503 1554 8.375608 TGTCAATTTTGGGATGTTTGTTTATG 57.624 30.769 0.00 0.00 0.00 1.90
1514 1569 7.037438 GGATGTTTGTTTATGACTAGTACCGA 58.963 38.462 0.00 0.00 0.00 4.69
1515 1570 7.222224 GGATGTTTGTTTATGACTAGTACCGAG 59.778 40.741 0.00 0.00 0.00 4.63
1518 1573 4.990257 TGTTTATGACTAGTACCGAGTGC 58.010 43.478 0.00 0.00 0.00 4.40
1526 1581 5.469084 TGACTAGTACCGAGTGCATATACAG 59.531 44.000 0.00 0.00 0.00 2.74
1532 1587 3.566322 ACCGAGTGCATATACAGAGACTC 59.434 47.826 0.00 0.00 0.00 3.36
1550 1605 8.420222 CAGAGACTCCAGTTTCTGTATATCATT 58.580 37.037 15.87 0.00 46.24 2.57
1601 1662 7.570691 CGCCTTTGTTTCGAACTAGTCTAAATT 60.571 37.037 0.00 0.00 0.00 1.82
1604 1665 7.935338 TTGTTTCGAACTAGTCTAAATTCGT 57.065 32.000 18.51 0.00 43.35 3.85
1613 1674 8.463456 AACTAGTCTAAATTCGTACTTGCTTC 57.537 34.615 0.00 0.00 0.00 3.86
1623 1684 3.192001 TCGTACTTGCTTCAATACCTCGT 59.808 43.478 0.00 0.00 0.00 4.18
1657 1733 2.742053 TGCCGACATTTCTTAGTGCTTC 59.258 45.455 0.00 0.00 0.00 3.86
1662 1738 5.390991 CCGACATTTCTTAGTGCTTCCTTTC 60.391 44.000 0.00 0.00 0.00 2.62
1672 1748 2.893489 GTGCTTCCTTTCTTCCATTGGT 59.107 45.455 1.86 0.00 0.00 3.67
1676 1752 5.010282 GCTTCCTTTCTTCCATTGGTAGAA 58.990 41.667 17.89 17.89 37.33 2.10
1702 1778 8.729805 AAAAGAATATGTGAGATTCTGACCTC 57.270 34.615 0.63 0.00 41.71 3.85
1705 1781 7.068702 AGAATATGTGAGATTCTGACCTCTCT 58.931 38.462 14.24 0.00 41.16 3.10
1723 1809 5.220739 CCTCTCTGAATTACCTGCAAAATCG 60.221 44.000 0.00 0.00 0.00 3.34
1731 1817 1.000274 ACCTGCAAAATCGTGCTTTCC 60.000 47.619 0.00 0.00 45.17 3.13
1756 1842 5.579564 TTTGATGATGCGATGATCCAAAA 57.420 34.783 0.00 0.00 0.00 2.44
1779 1865 6.998968 ATTCTAGTCTGAAATTCTTGCTGG 57.001 37.500 0.00 0.00 0.00 4.85
1780 1866 4.256920 TCTAGTCTGAAATTCTTGCTGGC 58.743 43.478 0.00 0.00 0.00 4.85
1785 1871 2.559668 CTGAAATTCTTGCTGGCCTCAA 59.440 45.455 3.32 7.59 0.00 3.02
1791 1877 2.318908 TCTTGCTGGCCTCAACATTTT 58.681 42.857 3.32 0.00 0.00 1.82
2077 2166 4.810191 TCCAAAAGTCCTAAGAGCTCTC 57.190 45.455 18.55 3.71 0.00 3.20
2098 2187 4.256920 TCATAGAACAAGCAGAAAGGCTC 58.743 43.478 0.00 0.00 45.07 4.70
2147 2236 1.613437 ACAAATTCCCAGTCTTTGCGG 59.387 47.619 0.00 0.00 34.08 5.69
2221 2310 2.544726 CGAAGGAGTGGAAACAGCC 58.455 57.895 0.00 0.00 44.46 4.85
2294 2383 5.458891 ACGAGGTATAACTTCACGATATGC 58.541 41.667 4.54 0.00 0.00 3.14
2371 2469 4.574674 TGGATTTCTGACCTGCTAACAT 57.425 40.909 0.00 0.00 0.00 2.71
2377 2475 4.128925 TCTGACCTGCTAACATGCTTAG 57.871 45.455 0.00 1.81 0.00 2.18
2378 2476 2.611292 CTGACCTGCTAACATGCTTAGC 59.389 50.000 22.55 22.55 45.57 3.09
2401 2499 2.430465 TCAATTCAGCTCTGACTTGCC 58.570 47.619 19.09 0.00 44.69 4.52
2406 2504 1.020333 CAGCTCTGACTTGCCTCTGC 61.020 60.000 0.00 0.00 38.26 4.26
2459 2559 2.417719 ACTGTTAAGGCTTCTTCGCAG 58.582 47.619 1.30 8.71 37.86 5.18
2465 2565 5.880332 TGTTAAGGCTTCTTCGCAGATAAAT 59.120 36.000 1.30 0.00 35.04 1.40
2469 2569 6.364945 AGGCTTCTTCGCAGATAAATAAAC 57.635 37.500 0.00 0.00 35.04 2.01
2523 2623 5.572211 CGGATGATGATGTTTGGTTAGTTG 58.428 41.667 0.00 0.00 0.00 3.16
2610 2715 5.748402 TGTGAGAGGAAAGCATCACATAAT 58.252 37.500 2.91 0.00 45.18 1.28
2614 2719 7.712639 GTGAGAGGAAAGCATCACATAATAGAA 59.287 37.037 0.00 0.00 41.32 2.10
2615 2720 8.435187 TGAGAGGAAAGCATCACATAATAGAAT 58.565 33.333 0.00 0.00 0.00 2.40
2698 2868 9.956720 CTTTCTCACAACATCTTCAAAATAAGT 57.043 29.630 0.00 0.00 0.00 2.24
2718 2888 1.035139 GCATCATAGCCCCCAACTTG 58.965 55.000 0.00 0.00 0.00 3.16
2731 3020 1.470098 CCAACTTGAGCCTACATGTGC 59.530 52.381 9.11 4.06 0.00 4.57
2746 3035 5.929058 ACATGTGCTGATCGGAGATATAT 57.071 39.130 5.48 0.00 45.12 0.86
2904 3194 2.945008 TGAAGCAGTGTCTGTTTTCCTG 59.055 45.455 0.98 0.00 35.20 3.86
2905 3195 1.312815 AGCAGTGTCTGTTTTCCTGC 58.687 50.000 0.00 0.00 46.78 4.85
2911 3201 3.129287 AGTGTCTGTTTTCCTGCTTGTTG 59.871 43.478 0.00 0.00 0.00 3.33
2915 3205 5.184096 TGTCTGTTTTCCTGCTTGTTGTTAA 59.816 36.000 0.00 0.00 0.00 2.01
2916 3206 5.743872 GTCTGTTTTCCTGCTTGTTGTTAAG 59.256 40.000 0.00 0.00 0.00 1.85
2931 3223 5.986741 TGTTGTTAAGTGTTTGATCGCTCTA 59.013 36.000 0.00 0.00 0.00 2.43
2951 3243 8.328864 CGCTCTATGATACAACTAAAGGAAAAC 58.671 37.037 0.00 0.00 0.00 2.43
3060 3352 3.460103 AGTTTTGCAGGCTTTGATTGTG 58.540 40.909 0.00 0.00 0.00 3.33
3096 3388 1.204786 TCCATGGTCGGACATTGGGT 61.205 55.000 21.38 0.00 0.00 4.51
3240 3540 0.761187 TTGAGCTCTGTCAAGTGCCT 59.239 50.000 16.19 0.00 42.66 4.75
3256 3556 3.322254 AGTGCCTACCATATGCTACTGTC 59.678 47.826 0.00 0.00 0.00 3.51
3295 3595 5.745294 GCATGCTGACAAATACTATTTGGTG 59.255 40.000 20.72 13.01 33.92 4.17
3366 3666 4.384940 GAGAAGCTGGGGTATGAATCTTC 58.615 47.826 0.00 0.00 0.00 2.87
3378 3678 6.116126 GGTATGAATCTTCAAGTTACTGGCT 58.884 40.000 0.00 0.00 41.13 4.75
3379 3679 6.599638 GGTATGAATCTTCAAGTTACTGGCTT 59.400 38.462 0.00 0.00 41.13 4.35
3380 3680 7.121315 GGTATGAATCTTCAAGTTACTGGCTTT 59.879 37.037 0.00 0.00 41.13 3.51
3381 3681 6.959639 TGAATCTTCAAGTTACTGGCTTTT 57.040 33.333 0.00 0.00 33.55 2.27
3382 3682 7.346751 TGAATCTTCAAGTTACTGGCTTTTT 57.653 32.000 0.00 0.00 33.55 1.94
3422 3722 7.201145 TCGTTATCCTCTGTTGCTAGTTATTC 58.799 38.462 0.00 0.00 0.00 1.75
3525 3829 8.515414 GTTTAATTGACTGGAAGAGCTTGTTAT 58.485 33.333 0.00 0.00 37.43 1.89
3526 3830 6.506500 AATTGACTGGAAGAGCTTGTTATG 57.493 37.500 0.00 0.00 37.43 1.90
3699 4003 9.883142 AATGGAAAACAAATGACAAGAAAGTAA 57.117 25.926 0.00 0.00 0.00 2.24
3752 4056 2.029918 GGAACCCTTTCATTGCACACTC 60.030 50.000 0.00 0.00 32.80 3.51
3758 4062 1.527034 TTCATTGCACACTCTCCTGC 58.473 50.000 0.00 0.00 0.00 4.85
3790 4094 2.751259 GCAAGTGATCAGATCCAAGCAA 59.249 45.455 8.00 0.00 0.00 3.91
3802 4106 5.981315 CAGATCCAAGCAATGCGATTTAATT 59.019 36.000 0.00 0.00 0.00 1.40
3805 4109 5.270083 TCCAAGCAATGCGATTTAATTACG 58.730 37.500 0.00 0.00 0.00 3.18
3817 4121 6.534059 CGATTTAATTACGGTGCCATATCTG 58.466 40.000 0.00 0.00 0.00 2.90
3832 4136 5.413833 GCCATATCTGTCTGACATTATTGGG 59.586 44.000 21.33 17.08 0.00 4.12
3954 4261 6.648879 TGCTAACCAAAGTGCTAAAAAGAT 57.351 33.333 0.00 0.00 0.00 2.40
3995 4302 3.377172 GGTGACATTTATGGTGCCTGTAC 59.623 47.826 0.00 0.00 0.00 2.90
4020 4327 9.479549 ACCCAAGTTTCTGTTATATCATGATTT 57.520 29.630 14.65 8.79 0.00 2.17
4208 4516 0.439600 GCAAAATGTTGGCATGCGAC 59.560 50.000 12.44 13.37 35.15 5.19
4269 4577 9.263538 TCTTTTCTGATACTCTCTACGTATCTC 57.736 37.037 0.00 0.00 42.23 2.75
4308 4616 0.178873 ACCTGGTGGTGAGGTGGTAT 60.179 55.000 0.00 0.00 46.51 2.73
4316 4624 2.771943 TGGTGAGGTGGTATTCTCCATC 59.228 50.000 0.00 0.00 39.81 3.51
4363 4671 0.179040 TGGTGGGTGAGGTTTTCGTC 60.179 55.000 0.00 0.00 35.54 4.20
4372 4680 4.210746 GGTGAGGTTTTCGTCTTGTTCTAC 59.789 45.833 0.00 0.00 35.92 2.59
4465 4773 0.456312 GAGTAGTTCCGGTCAGTGCG 60.456 60.000 0.00 0.00 0.00 5.34
4548 4856 9.706691 TGAACCACTGTTAATTTTGTTTGTTTA 57.293 25.926 0.00 0.00 33.97 2.01
4563 4871 9.712305 TTTGTTTGTTTAAGTTCATTCCAAAGA 57.288 25.926 0.00 0.00 0.00 2.52
4593 4901 8.592105 TTAAATGAAAGCTGATTCAGTTTTGG 57.408 30.769 26.74 0.00 42.90 3.28
4603 4911 6.571150 GCTGATTCAGTTTTGGCTTTAGTGAT 60.571 38.462 14.90 0.00 33.43 3.06
4604 4912 7.288810 TGATTCAGTTTTGGCTTTAGTGATT 57.711 32.000 0.00 0.00 0.00 2.57
4614 4922 7.994425 TTGGCTTTAGTGATTACAAATCTCA 57.006 32.000 1.70 0.00 0.00 3.27
4673 4981 6.018343 GGAAATTACACTCTAGATTCAGCTGC 60.018 42.308 9.47 0.00 0.00 5.25
4683 4991 3.997762 AGATTCAGCTGCATGATCTCTC 58.002 45.455 9.47 0.00 0.00 3.20
4684 4992 2.616634 TTCAGCTGCATGATCTCTCC 57.383 50.000 9.47 0.00 0.00 3.71
4719 5027 7.429340 CAGTGTTCTTTTTGTGTATGTCTTGTC 59.571 37.037 0.00 0.00 0.00 3.18
4736 5044 7.159372 TGTCTTGTCCCTGAAATTACTCTTAC 58.841 38.462 0.00 0.00 0.00 2.34
4745 5053 8.095169 CCCTGAAATTACTCTTACACAGTTACT 58.905 37.037 0.00 0.00 0.00 2.24
4746 5054 9.490379 CCTGAAATTACTCTTACACAGTTACTT 57.510 33.333 0.00 0.00 0.00 2.24
5122 5430 4.558226 TTGCATCAAGCTAAAGGAGAGA 57.442 40.909 0.00 0.00 45.94 3.10
5131 5439 3.134442 AGCTAAAGGAGAGAGGCATTCTG 59.866 47.826 0.00 0.00 35.87 3.02
5155 5463 2.342650 GCCCACGCATGACACCATT 61.343 57.895 0.00 0.00 34.03 3.16
5161 5469 0.867746 CGCATGACACCATTATCCGG 59.132 55.000 0.00 0.00 0.00 5.14
5174 5482 2.684586 TATCCGGTTAGCCCCTCCCC 62.685 65.000 0.00 0.00 0.00 4.81
5203 5511 1.111277 GGTATGACCCATTTGCCCAC 58.889 55.000 0.00 0.00 30.04 4.61
5213 5521 2.415357 CCATTTGCCCACGTGTTATCAC 60.415 50.000 15.65 0.00 40.79 3.06
5226 5534 2.186076 GTTATCACGCCTCGTTCTCTG 58.814 52.381 0.00 0.00 38.32 3.35
5256 5564 4.751600 CAGAAGTCTGCATTTACTGACACA 59.248 41.667 4.57 0.00 40.02 3.72
5308 5616 2.107366 CCAAAACCTGTGGTTCCAGTT 58.893 47.619 2.22 0.00 46.20 3.16
5433 5741 2.962253 GTCTGCGATAGGTGCGGC 60.962 66.667 0.00 0.00 38.62 6.53
5446 5754 1.310904 GTGCGGCCGGGATTTATAAA 58.689 50.000 29.38 0.00 0.00 1.40
5449 5757 1.530323 CGGCCGGGATTTATAAAGGG 58.470 55.000 20.10 4.00 0.00 3.95
5491 5799 5.104193 AGAGATGAGGTACCAGCAATTTCAT 60.104 40.000 15.94 12.25 0.00 2.57
5507 5818 2.879208 TCATAGACACCATACCCCCA 57.121 50.000 0.00 0.00 0.00 4.96
5533 5844 7.337942 AGAATAACAGAACATGGATTTCTCACC 59.662 37.037 0.00 0.00 30.56 4.02
5544 5855 3.387050 GGATTTCTCACCGTGGTATACCT 59.613 47.826 22.41 0.00 36.82 3.08
5546 5857 3.377253 TTCTCACCGTGGTATACCTCT 57.623 47.619 22.41 1.85 36.82 3.69
5583 5894 4.583907 TCTGTTCAGAAAATGTGCCATTGA 59.416 37.500 0.00 0.00 0.00 2.57
5643 5954 3.499918 CCATCTGCCCATTCTCGTTATTC 59.500 47.826 0.00 0.00 0.00 1.75
5699 6010 1.069432 GCGAGACGGTGAGCGATTATA 60.069 52.381 12.27 0.00 0.00 0.98
5700 6011 2.414293 GCGAGACGGTGAGCGATTATAT 60.414 50.000 12.27 0.00 0.00 0.86
5701 6012 3.164358 CGAGACGGTGAGCGATTATATG 58.836 50.000 12.27 0.00 0.00 1.78
5740 6051 7.145932 ACAAGCAGGAAAGTATATGTTTCAC 57.854 36.000 12.12 4.74 35.90 3.18
5803 6123 5.649782 AGTTTTGCTTCATACCATCTTGG 57.350 39.130 0.00 0.00 45.02 3.61
5804 6124 5.539955 AAGTTTTGCTTCATACCATCTTGGT 59.460 36.000 4.36 4.36 43.39 3.67
5805 6125 6.517194 AAGTTTTGCTTCATACCATCTTGGTG 60.517 38.462 9.43 0.00 41.76 4.17
5806 6126 8.827279 AAGTTTTGCTTCATACCATCTTGGTGT 61.827 37.037 9.43 0.00 41.76 4.16
5815 6135 3.923017 CCATCTTGGTGTTCTGTTTCC 57.077 47.619 0.00 0.00 31.35 3.13
5816 6136 3.490348 CCATCTTGGTGTTCTGTTTCCT 58.510 45.455 0.00 0.00 31.35 3.36
5817 6137 3.891366 CCATCTTGGTGTTCTGTTTCCTT 59.109 43.478 0.00 0.00 31.35 3.36
5818 6138 4.022849 CCATCTTGGTGTTCTGTTTCCTTC 60.023 45.833 0.00 0.00 31.35 3.46
5819 6139 4.503714 TCTTGGTGTTCTGTTTCCTTCT 57.496 40.909 0.00 0.00 0.00 2.85
5820 6140 4.855340 TCTTGGTGTTCTGTTTCCTTCTT 58.145 39.130 0.00 0.00 0.00 2.52
5821 6141 5.261216 TCTTGGTGTTCTGTTTCCTTCTTT 58.739 37.500 0.00 0.00 0.00 2.52
5822 6142 5.357032 TCTTGGTGTTCTGTTTCCTTCTTTC 59.643 40.000 0.00 0.00 0.00 2.62
5823 6143 3.951680 TGGTGTTCTGTTTCCTTCTTTCC 59.048 43.478 0.00 0.00 0.00 3.13
5824 6144 3.318275 GGTGTTCTGTTTCCTTCTTTCCC 59.682 47.826 0.00 0.00 0.00 3.97
5825 6145 3.003378 GTGTTCTGTTTCCTTCTTTCCCG 59.997 47.826 0.00 0.00 0.00 5.14
5943 6268 4.202010 CGAGTGTCCATTGGTTTTCAGTTT 60.202 41.667 1.86 0.00 0.00 2.66
5945 6270 6.459024 CGAGTGTCCATTGGTTTTCAGTTTTA 60.459 38.462 1.86 0.00 0.00 1.52
5951 6276 8.364894 GTCCATTGGTTTTCAGTTTTACCTATT 58.635 33.333 1.86 0.00 0.00 1.73
6054 6385 2.356667 CTTTGGCCAGGTCCTCCC 59.643 66.667 5.11 0.00 0.00 4.30
6071 6402 3.554934 CTCCCTACATTTAGGCATTGCA 58.445 45.455 11.39 0.00 43.56 4.08
6241 6573 4.978580 GCGTTGCTCTTCAAAAGAATCTTT 59.021 37.500 1.80 1.80 37.02 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.598894 CCAGGGAGATGGCGCGAG 62.599 72.222 12.10 0.00 32.48 5.03
5 6 4.899239 GACCAGGGAGATGGCGCG 62.899 72.222 0.00 0.00 44.80 6.86
6 7 4.899239 CGACCAGGGAGATGGCGC 62.899 72.222 0.00 0.00 44.80 6.53
7 8 4.899239 GCGACCAGGGAGATGGCG 62.899 72.222 0.00 0.00 44.80 5.69
8 9 3.785859 TGCGACCAGGGAGATGGC 61.786 66.667 0.00 0.00 44.80 4.40
9 10 2.187946 GTGCGACCAGGGAGATGG 59.812 66.667 0.00 0.00 46.47 3.51
10 11 2.202797 CGTGCGACCAGGGAGATG 60.203 66.667 0.00 0.00 0.00 2.90
11 12 2.362503 TCGTGCGACCAGGGAGAT 60.363 61.111 0.00 0.00 0.00 2.75
12 13 3.062466 CTCGTGCGACCAGGGAGA 61.062 66.667 0.00 0.00 0.00 3.71
13 14 4.135153 CCTCGTGCGACCAGGGAG 62.135 72.222 0.00 0.00 0.00 4.30
14 15 4.671590 TCCTCGTGCGACCAGGGA 62.672 66.667 0.00 0.00 0.00 4.20
15 16 4.135153 CTCCTCGTGCGACCAGGG 62.135 72.222 0.00 0.00 0.00 4.45
16 17 3.057547 CTCTCCTCGTGCGACCAGG 62.058 68.421 0.00 0.00 0.00 4.45
17 18 1.587043 TTCTCTCCTCGTGCGACCAG 61.587 60.000 0.00 0.00 0.00 4.00
18 19 1.587043 CTTCTCTCCTCGTGCGACCA 61.587 60.000 0.00 0.00 0.00 4.02
19 20 1.137825 CTTCTCTCCTCGTGCGACC 59.862 63.158 0.00 0.00 0.00 4.79
20 21 1.515304 GCTTCTCTCCTCGTGCGAC 60.515 63.158 0.00 0.00 0.00 5.19
21 22 2.878429 GCTTCTCTCCTCGTGCGA 59.122 61.111 0.00 0.00 0.00 5.10
22 23 2.578178 CGCTTCTCTCCTCGTGCG 60.578 66.667 0.00 0.00 37.57 5.34
23 24 2.883253 GCGCTTCTCTCCTCGTGC 60.883 66.667 0.00 0.00 0.00 5.34
24 25 2.578178 CGCGCTTCTCTCCTCGTG 60.578 66.667 5.56 0.00 0.00 4.35
25 26 3.041627 GACGCGCTTCTCTCCTCGT 62.042 63.158 5.73 0.00 0.00 4.18
26 27 2.277628 GACGCGCTTCTCTCCTCG 60.278 66.667 5.73 0.00 0.00 4.63
27 28 2.277628 CGACGCGCTTCTCTCCTC 60.278 66.667 12.41 0.00 0.00 3.71
56 57 2.669808 AATCGGCAGTAGCTCGCGAG 62.670 60.000 31.37 31.37 41.70 5.03
57 58 2.663630 GAATCGGCAGTAGCTCGCGA 62.664 60.000 9.26 9.26 41.70 5.87
58 59 2.278857 AATCGGCAGTAGCTCGCG 60.279 61.111 0.00 0.00 41.70 5.87
59 60 2.296480 CGAATCGGCAGTAGCTCGC 61.296 63.158 0.00 0.00 41.70 5.03
60 61 1.658717 CCGAATCGGCAGTAGCTCG 60.659 63.158 9.39 0.00 41.17 5.03
61 62 1.300233 CCCGAATCGGCAGTAGCTC 60.300 63.158 17.50 0.00 46.86 4.09
62 63 2.815308 CCCGAATCGGCAGTAGCT 59.185 61.111 17.50 0.00 46.86 3.32
69 70 3.872728 GGAAACGCCCGAATCGGC 61.873 66.667 17.50 10.95 46.86 5.54
78 79 3.647771 AGACCCAGGGGAAACGCC 61.648 66.667 11.37 0.00 46.15 5.68
79 80 2.359975 CAGACCCAGGGGAAACGC 60.360 66.667 11.37 0.00 45.13 4.84
80 81 2.351276 CCAGACCCAGGGGAAACG 59.649 66.667 11.37 0.00 38.96 3.60
81 82 2.035783 GCCAGACCCAGGGGAAAC 59.964 66.667 11.37 2.29 38.96 2.78
82 83 3.264845 GGCCAGACCCAGGGGAAA 61.265 66.667 11.37 0.00 38.96 3.13
83 84 4.285790 AGGCCAGACCCAGGGGAA 62.286 66.667 11.37 0.00 40.58 3.97
87 88 3.406200 CTCCAGGCCAGACCCAGG 61.406 72.222 5.01 0.00 40.58 4.45
88 89 1.692042 ATCTCCAGGCCAGACCCAG 60.692 63.158 5.01 0.00 40.58 4.45
89 90 1.997311 CATCTCCAGGCCAGACCCA 60.997 63.158 5.01 0.00 40.58 4.51
90 91 2.914289 CATCTCCAGGCCAGACCC 59.086 66.667 5.01 0.00 40.58 4.46
91 92 1.919600 AAGCATCTCCAGGCCAGACC 61.920 60.000 5.01 0.00 39.61 3.85
92 93 0.034670 AAAGCATCTCCAGGCCAGAC 60.035 55.000 5.01 0.00 0.00 3.51
93 94 1.583556 TAAAGCATCTCCAGGCCAGA 58.416 50.000 5.01 0.00 0.00 3.86
94 95 2.295885 CTTAAAGCATCTCCAGGCCAG 58.704 52.381 5.01 0.00 0.00 4.85
95 96 1.064463 CCTTAAAGCATCTCCAGGCCA 60.064 52.381 5.01 0.00 0.00 5.36
96 97 1.064389 ACCTTAAAGCATCTCCAGGCC 60.064 52.381 0.00 0.00 0.00 5.19
97 98 2.426842 ACCTTAAAGCATCTCCAGGC 57.573 50.000 0.00 0.00 0.00 4.85
98 99 2.939103 CGAACCTTAAAGCATCTCCAGG 59.061 50.000 0.00 0.00 0.00 4.45
99 100 3.372206 CACGAACCTTAAAGCATCTCCAG 59.628 47.826 0.00 0.00 0.00 3.86
100 101 3.334691 CACGAACCTTAAAGCATCTCCA 58.665 45.455 0.00 0.00 0.00 3.86
101 102 2.096013 GCACGAACCTTAAAGCATCTCC 59.904 50.000 0.00 0.00 0.00 3.71
102 103 2.096013 GGCACGAACCTTAAAGCATCTC 59.904 50.000 0.00 0.00 0.00 2.75
103 104 2.084546 GGCACGAACCTTAAAGCATCT 58.915 47.619 0.00 0.00 0.00 2.90
104 105 1.810151 TGGCACGAACCTTAAAGCATC 59.190 47.619 0.00 0.00 0.00 3.91
105 106 1.904287 TGGCACGAACCTTAAAGCAT 58.096 45.000 0.00 0.00 0.00 3.79
106 107 1.539388 CATGGCACGAACCTTAAAGCA 59.461 47.619 0.00 0.00 0.00 3.91
107 108 1.732405 GCATGGCACGAACCTTAAAGC 60.732 52.381 0.00 0.00 0.00 3.51
108 109 1.465689 CGCATGGCACGAACCTTAAAG 60.466 52.381 0.00 0.00 0.00 1.85
109 110 0.519519 CGCATGGCACGAACCTTAAA 59.480 50.000 0.00 0.00 0.00 1.52
110 111 1.302383 CCGCATGGCACGAACCTTAA 61.302 55.000 0.00 0.00 0.00 1.85
111 112 1.743623 CCGCATGGCACGAACCTTA 60.744 57.895 0.00 0.00 0.00 2.69
112 113 3.055719 CCGCATGGCACGAACCTT 61.056 61.111 0.00 0.00 0.00 3.50
127 128 3.784412 CGTTTACTGTGCGGCCCG 61.784 66.667 0.00 0.00 0.00 6.13
128 129 1.356527 CTACGTTTACTGTGCGGCCC 61.357 60.000 0.00 0.00 0.00 5.80
129 130 0.388907 TCTACGTTTACTGTGCGGCC 60.389 55.000 0.00 0.00 0.00 6.13
130 131 0.712222 GTCTACGTTTACTGTGCGGC 59.288 55.000 0.00 0.00 0.00 6.53
131 132 2.054687 TGTCTACGTTTACTGTGCGG 57.945 50.000 0.00 0.00 0.00 5.69
132 133 2.154389 GGTTGTCTACGTTTACTGTGCG 59.846 50.000 0.00 0.00 0.00 5.34
133 134 3.125316 TGGTTGTCTACGTTTACTGTGC 58.875 45.455 0.00 0.00 0.00 4.57
134 135 5.495502 GTTTGGTTGTCTACGTTTACTGTG 58.504 41.667 0.00 0.00 0.00 3.66
135 136 4.268405 CGTTTGGTTGTCTACGTTTACTGT 59.732 41.667 0.00 0.00 0.00 3.55
136 137 4.318263 CCGTTTGGTTGTCTACGTTTACTG 60.318 45.833 0.00 0.00 32.45 2.74
137 138 3.803778 CCGTTTGGTTGTCTACGTTTACT 59.196 43.478 0.00 0.00 32.45 2.24
138 139 3.059665 CCCGTTTGGTTGTCTACGTTTAC 60.060 47.826 0.00 0.00 32.45 2.01
139 140 3.129871 CCCGTTTGGTTGTCTACGTTTA 58.870 45.455 0.00 0.00 32.45 2.01
140 141 1.941975 CCCGTTTGGTTGTCTACGTTT 59.058 47.619 0.00 0.00 32.45 3.60
141 142 1.585297 CCCGTTTGGTTGTCTACGTT 58.415 50.000 0.00 0.00 32.45 3.99
142 143 3.294079 CCCGTTTGGTTGTCTACGT 57.706 52.632 0.00 0.00 32.45 3.57
152 153 3.649073 GGAAAGAAAATGACCCGTTTGG 58.351 45.455 0.00 0.00 41.37 3.28
153 154 3.305110 CGGAAAGAAAATGACCCGTTTG 58.695 45.455 0.00 0.00 33.02 2.93
154 155 2.287970 GCGGAAAGAAAATGACCCGTTT 60.288 45.455 0.00 0.00 39.18 3.60
155 156 1.268625 GCGGAAAGAAAATGACCCGTT 59.731 47.619 0.00 0.00 39.18 4.44
156 157 0.879090 GCGGAAAGAAAATGACCCGT 59.121 50.000 0.00 0.00 39.18 5.28
157 158 0.179200 CGCGGAAAGAAAATGACCCG 60.179 55.000 0.00 0.00 39.88 5.28
158 159 0.456142 GCGCGGAAAGAAAATGACCC 60.456 55.000 8.83 0.00 0.00 4.46
159 160 0.793104 CGCGCGGAAAGAAAATGACC 60.793 55.000 24.84 0.00 0.00 4.02
160 161 0.165079 TCGCGCGGAAAGAAAATGAC 59.835 50.000 31.69 0.00 0.00 3.06
161 162 0.442310 CTCGCGCGGAAAGAAAATGA 59.558 50.000 31.69 4.37 0.00 2.57
162 163 1.128147 GCTCGCGCGGAAAGAAAATG 61.128 55.000 31.69 8.20 0.00 2.32
163 164 1.134694 GCTCGCGCGGAAAGAAAAT 59.865 52.632 31.69 0.00 0.00 1.82
164 165 2.554272 GCTCGCGCGGAAAGAAAA 59.446 55.556 31.69 6.68 0.00 2.29
165 166 3.419759 GGCTCGCGCGGAAAGAAA 61.420 61.111 31.69 7.55 36.88 2.52
166 167 4.673298 TGGCTCGCGCGGAAAGAA 62.673 61.111 31.69 8.41 36.88 2.52
181 182 1.352017 TGCATATATGGCCCAGTCTGG 59.648 52.381 12.40 12.40 37.25 3.86
182 183 2.617276 CCTGCATATATGGCCCAGTCTG 60.617 54.545 14.51 0.00 0.00 3.51
183 184 1.632409 CCTGCATATATGGCCCAGTCT 59.368 52.381 14.51 0.00 0.00 3.24
184 185 1.952367 GCCTGCATATATGGCCCAGTC 60.952 57.143 14.51 0.10 40.71 3.51
185 186 0.038744 GCCTGCATATATGGCCCAGT 59.961 55.000 14.51 0.00 40.71 4.00
186 187 0.038599 TGCCTGCATATATGGCCCAG 59.961 55.000 14.51 12.11 45.56 4.45
187 188 0.482006 TTGCCTGCATATATGGCCCA 59.518 50.000 14.51 3.43 45.56 5.36
188 189 0.890683 GTTGCCTGCATATATGGCCC 59.109 55.000 14.51 0.00 45.56 5.80
189 190 0.890683 GGTTGCCTGCATATATGGCC 59.109 55.000 14.51 0.00 45.56 5.36
190 191 1.619654 TGGTTGCCTGCATATATGGC 58.380 50.000 14.51 9.89 46.26 4.40
191 192 3.384146 TGTTTGGTTGCCTGCATATATGG 59.616 43.478 14.51 0.00 0.00 2.74
192 193 4.362279 GTGTTTGGTTGCCTGCATATATG 58.638 43.478 8.45 8.45 0.00 1.78
193 194 3.066621 CGTGTTTGGTTGCCTGCATATAT 59.933 43.478 0.00 0.00 0.00 0.86
194 195 2.421775 CGTGTTTGGTTGCCTGCATATA 59.578 45.455 0.00 0.00 0.00 0.86
195 196 1.202114 CGTGTTTGGTTGCCTGCATAT 59.798 47.619 0.00 0.00 0.00 1.78
196 197 0.595588 CGTGTTTGGTTGCCTGCATA 59.404 50.000 0.00 0.00 0.00 3.14
197 198 1.363443 CGTGTTTGGTTGCCTGCAT 59.637 52.632 0.00 0.00 0.00 3.96
198 199 2.804167 CGTGTTTGGTTGCCTGCA 59.196 55.556 0.00 0.00 0.00 4.41
199 200 2.658268 GCGTGTTTGGTTGCCTGC 60.658 61.111 0.00 0.00 0.00 4.85
200 201 2.027460 GGCGTGTTTGGTTGCCTG 59.973 61.111 0.00 0.00 44.16 4.85
203 204 1.500512 TACGAGGCGTGTTTGGTTGC 61.501 55.000 2.33 0.00 41.39 4.17
204 205 0.511221 CTACGAGGCGTGTTTGGTTG 59.489 55.000 2.33 0.00 41.39 3.77
205 206 0.390124 TCTACGAGGCGTGTTTGGTT 59.610 50.000 2.33 0.00 41.39 3.67
206 207 0.606604 ATCTACGAGGCGTGTTTGGT 59.393 50.000 2.33 0.00 41.39 3.67
207 208 0.999406 CATCTACGAGGCGTGTTTGG 59.001 55.000 2.33 0.00 41.39 3.28
208 209 0.370273 GCATCTACGAGGCGTGTTTG 59.630 55.000 2.33 0.00 41.39 2.93
209 210 0.246635 AGCATCTACGAGGCGTGTTT 59.753 50.000 2.33 0.00 44.44 2.83
210 211 0.458543 CAGCATCTACGAGGCGTGTT 60.459 55.000 2.33 0.00 44.44 3.32
211 212 1.139734 CAGCATCTACGAGGCGTGT 59.860 57.895 2.33 0.00 44.44 4.49
212 213 0.031314 ATCAGCATCTACGAGGCGTG 59.969 55.000 2.33 0.00 44.44 5.34
213 214 1.537638 CTATCAGCATCTACGAGGCGT 59.462 52.381 0.00 0.00 44.44 5.68
214 215 1.730772 GCTATCAGCATCTACGAGGCG 60.731 57.143 0.00 0.00 44.44 5.52
215 216 1.543802 AGCTATCAGCATCTACGAGGC 59.456 52.381 0.38 0.00 45.56 4.70
216 217 2.556189 ACAGCTATCAGCATCTACGAGG 59.444 50.000 0.38 0.00 45.56 4.63
217 218 3.251972 TCACAGCTATCAGCATCTACGAG 59.748 47.826 0.38 0.00 45.56 4.18
218 219 3.214328 TCACAGCTATCAGCATCTACGA 58.786 45.455 0.38 0.00 45.56 3.43
219 220 3.004210 ACTCACAGCTATCAGCATCTACG 59.996 47.826 0.38 0.00 45.56 3.51
220 221 4.582701 ACTCACAGCTATCAGCATCTAC 57.417 45.455 0.38 0.00 45.56 2.59
221 222 5.127682 TGAAACTCACAGCTATCAGCATCTA 59.872 40.000 0.38 0.00 45.56 1.98
222 223 4.081254 TGAAACTCACAGCTATCAGCATCT 60.081 41.667 0.38 0.00 45.56 2.90
223 224 4.186926 TGAAACTCACAGCTATCAGCATC 58.813 43.478 0.38 0.00 45.56 3.91
224 225 4.212143 TGAAACTCACAGCTATCAGCAT 57.788 40.909 0.38 0.00 45.56 3.79
225 226 3.683365 TGAAACTCACAGCTATCAGCA 57.317 42.857 0.38 0.00 45.56 4.41
226 227 5.362556 TTTTGAAACTCACAGCTATCAGC 57.637 39.130 0.00 0.00 42.84 4.26
618 619 2.190578 GATGGGTTGGGGCTCGAG 59.809 66.667 8.45 8.45 0.00 4.04
666 667 2.806745 CGGAACAAGGCAGAGTGAGAAA 60.807 50.000 0.00 0.00 0.00 2.52
736 737 4.603535 GATGGGGGCGGAATGGGG 62.604 72.222 0.00 0.00 0.00 4.96
738 739 3.797507 CTGGATGGGGGCGGAATGG 62.798 68.421 0.00 0.00 0.00 3.16
739 740 2.203394 CTGGATGGGGGCGGAATG 60.203 66.667 0.00 0.00 0.00 2.67
740 741 2.368192 TCTGGATGGGGGCGGAAT 60.368 61.111 0.00 0.00 0.00 3.01
741 742 3.089874 CTCTGGATGGGGGCGGAA 61.090 66.667 0.00 0.00 0.00 4.30
785 796 2.597217 TTGCTTCCTGCGTTGGGG 60.597 61.111 0.00 0.00 46.63 4.96
877 903 2.815647 GTCCAGCCGGCTTCTTCG 60.816 66.667 30.60 15.77 0.00 3.79
983 1019 3.063197 ATCTCCGCCGACTCCCTCT 62.063 63.158 0.00 0.00 0.00 3.69
1175 1223 1.137872 AGGGTGCGATCTAGAAGCAAG 59.862 52.381 22.50 3.97 42.93 4.01
1176 1224 1.137086 GAGGGTGCGATCTAGAAGCAA 59.863 52.381 22.50 8.88 42.93 3.91
1212 1260 4.465512 CACAAGGCGTGCGATGGC 62.466 66.667 0.00 0.00 39.19 4.40
1248 1296 3.132646 GCAATGATGGGTAGAATTTGCCA 59.867 43.478 0.00 0.00 32.28 4.92
1256 1304 5.056480 CGATTGTAAGCAATGATGGGTAGA 58.944 41.667 0.00 0.00 44.61 2.59
1259 1307 2.358898 GCGATTGTAAGCAATGATGGGT 59.641 45.455 0.00 0.00 44.61 4.51
1260 1308 2.602933 CGCGATTGTAAGCAATGATGGG 60.603 50.000 0.00 0.00 44.61 4.00
1261 1309 2.642995 CGCGATTGTAAGCAATGATGG 58.357 47.619 0.00 0.00 44.61 3.51
1263 1311 1.333169 CGCGCGATTGTAAGCAATGAT 60.333 47.619 28.94 0.00 44.61 2.45
1264 1312 0.026156 CGCGCGATTGTAAGCAATGA 59.974 50.000 28.94 0.00 44.61 2.57
1265 1313 1.523368 GCGCGCGATTGTAAGCAATG 61.523 55.000 37.18 0.00 44.61 2.82
1266 1314 1.297598 GCGCGCGATTGTAAGCAAT 60.298 52.632 37.18 0.00 46.99 3.56
1267 1315 2.097538 GCGCGCGATTGTAAGCAA 59.902 55.556 37.18 0.00 39.16 3.91
1316 1367 1.078143 AAGACAATCCCAGCTCGCC 60.078 57.895 0.00 0.00 0.00 5.54
1318 1369 0.807667 CCGAAGACAATCCCAGCTCG 60.808 60.000 0.00 0.00 0.00 5.03
1327 1378 1.281925 ATGGAGGCCCCGAAGACAAT 61.282 55.000 0.00 0.00 37.93 2.71
1338 1389 1.943340 GAGTTGATCGAAATGGAGGCC 59.057 52.381 0.00 0.00 0.00 5.19
1339 1390 1.943340 GGAGTTGATCGAAATGGAGGC 59.057 52.381 0.00 0.00 0.00 4.70
1340 1391 2.205074 CGGAGTTGATCGAAATGGAGG 58.795 52.381 0.00 0.00 0.00 4.30
1341 1392 2.893637 ACGGAGTTGATCGAAATGGAG 58.106 47.619 0.00 0.00 37.78 3.86
1360 1411 9.813080 GCCGAAGAAGAATATATAAACATGAAC 57.187 33.333 0.00 0.00 0.00 3.18
1361 1412 9.554395 TGCCGAAGAAGAATATATAAACATGAA 57.446 29.630 0.00 0.00 0.00 2.57
1362 1413 8.988934 GTGCCGAAGAAGAATATATAAACATGA 58.011 33.333 0.00 0.00 0.00 3.07
1363 1414 8.993121 AGTGCCGAAGAAGAATATATAAACATG 58.007 33.333 0.00 0.00 0.00 3.21
1364 1415 9.561069 AAGTGCCGAAGAAGAATATATAAACAT 57.439 29.630 0.00 0.00 0.00 2.71
1365 1416 8.958119 AAGTGCCGAAGAAGAATATATAAACA 57.042 30.769 0.00 0.00 0.00 2.83
1366 1417 9.042008 TGAAGTGCCGAAGAAGAATATATAAAC 57.958 33.333 0.00 0.00 0.00 2.01
1367 1418 9.778741 ATGAAGTGCCGAAGAAGAATATATAAA 57.221 29.630 0.00 0.00 0.00 1.40
1368 1419 9.424319 GATGAAGTGCCGAAGAAGAATATATAA 57.576 33.333 0.00 0.00 0.00 0.98
1369 1420 8.807118 AGATGAAGTGCCGAAGAAGAATATATA 58.193 33.333 0.00 0.00 0.00 0.86
1370 1421 7.675062 AGATGAAGTGCCGAAGAAGAATATAT 58.325 34.615 0.00 0.00 0.00 0.86
1399 1450 2.510691 CGGAACCGCGCCACTAAT 60.511 61.111 0.00 0.00 0.00 1.73
1419 1470 1.107945 TGGTGATCGATTACTCCGCA 58.892 50.000 18.52 6.59 0.00 5.69
1420 1471 2.218953 TTGGTGATCGATTACTCCGC 57.781 50.000 18.52 3.41 0.00 5.54
1453 1504 4.556523 GCGAGAATCTGCTGAAAAATGTTC 59.443 41.667 0.00 0.00 33.14 3.18
1503 1554 5.699915 TCTGTATATGCACTCGGTACTAGTC 59.300 44.000 0.00 0.00 29.49 2.59
1514 1569 4.541705 ACTGGAGTCTCTGTATATGCACT 58.458 43.478 0.00 0.00 0.00 4.40
1515 1570 4.927978 ACTGGAGTCTCTGTATATGCAC 57.072 45.455 0.00 0.00 0.00 4.57
1518 1573 7.106439 ACAGAAACTGGAGTCTCTGTATATG 57.894 40.000 13.04 2.77 36.77 1.78
1526 1581 8.200792 ACAATGATATACAGAAACTGGAGTCTC 58.799 37.037 0.00 0.00 35.51 3.36
1532 1587 9.035607 GTCACTACAATGATATACAGAAACTGG 57.964 37.037 0.00 0.00 35.51 4.00
1550 1605 2.034179 CCGTTGAGTCACTGTCACTACA 59.966 50.000 0.00 0.00 0.00 2.74
1601 1662 3.192001 ACGAGGTATTGAAGCAAGTACGA 59.808 43.478 0.00 0.00 0.00 3.43
1604 1665 7.324935 TCAAATACGAGGTATTGAAGCAAGTA 58.675 34.615 2.07 0.00 38.52 2.24
1613 1674 6.568462 GCATCCCAATCAAATACGAGGTATTG 60.568 42.308 2.07 0.00 38.52 1.90
1623 1684 3.289407 TGTCGGCATCCCAATCAAATA 57.711 42.857 0.00 0.00 0.00 1.40
1676 1752 9.171877 GAGGTCAGAATCTCACATATTCTTTTT 57.828 33.333 0.00 0.00 40.81 1.94
1687 1763 5.596836 ATTCAGAGAGGTCAGAATCTCAC 57.403 43.478 13.83 4.66 43.64 3.51
1700 1776 5.352569 ACGATTTTGCAGGTAATTCAGAGAG 59.647 40.000 0.00 0.00 0.00 3.20
1702 1778 5.327091 CACGATTTTGCAGGTAATTCAGAG 58.673 41.667 0.00 0.00 0.00 3.35
1705 1781 3.505680 AGCACGATTTTGCAGGTAATTCA 59.494 39.130 0.00 0.00 45.62 2.57
1723 1809 3.305094 CGCATCATCAAAATGGAAAGCAC 59.695 43.478 0.00 0.00 33.42 4.40
1731 1817 5.116069 TGGATCATCGCATCATCAAAATG 57.884 39.130 0.00 0.00 0.00 2.32
1756 1842 5.356470 GCCAGCAAGAATTTCAGACTAGAAT 59.644 40.000 0.00 0.00 0.00 2.40
1779 1865 2.584791 CACGCAGTAAAATGTTGAGGC 58.415 47.619 0.00 0.00 41.61 4.70
1780 1866 2.031245 TGCACGCAGTAAAATGTTGAGG 60.031 45.455 0.00 0.00 41.61 3.86
1785 1871 1.238439 AGCTGCACGCAGTAAAATGT 58.762 45.000 19.56 0.00 41.61 2.71
1791 1877 1.080093 GTGGTAGCTGCACGCAGTA 60.080 57.895 19.56 8.65 41.61 2.74
1809 1895 1.476488 GAAAACACCATGGGAATCGGG 59.524 52.381 18.09 0.00 0.00 5.14
1845 1931 3.721575 TGCCTTCAGGGTCCAATATATGT 59.278 43.478 0.00 0.00 37.43 2.29
2077 2166 4.005650 TGAGCCTTTCTGCTTGTTCTATG 58.994 43.478 0.00 0.00 42.95 2.23
2098 2187 4.636249 AGAAAGCTCTGGAACTAAGTGTG 58.364 43.478 0.00 0.00 0.00 3.82
2147 2236 4.437390 CCCAAACATGCTCGTCAAATACTC 60.437 45.833 0.00 0.00 0.00 2.59
2221 2310 4.883006 CCCCATTTCCTTGCCAATTTAATG 59.117 41.667 0.00 0.00 0.00 1.90
2315 2404 4.021544 GCACATCCCAATACTGGAAAAACA 60.022 41.667 0.00 0.00 46.92 2.83
2377 2475 4.762956 AAGTCAGAGCTGAATTGAAAGC 57.237 40.909 11.82 0.00 44.80 3.51
2401 2499 4.314121 GGAACAGAATATGCTAGGCAGAG 58.686 47.826 0.00 0.00 43.65 3.35
2406 2504 3.648067 TCCAGGGAACAGAATATGCTAGG 59.352 47.826 0.00 0.00 0.00 3.02
2465 2565 9.629878 TCAAACAGACCCTTAAGTATTTGTTTA 57.370 29.630 17.38 9.05 36.20 2.01
2487 2587 1.802069 TCATCCGCGACAATGTCAAA 58.198 45.000 8.23 0.00 32.09 2.69
2494 2594 2.022764 AACATCATCATCCGCGACAA 57.977 45.000 8.23 0.00 0.00 3.18
2632 2737 7.543172 GTGACACGTTTACTCTATGGTAAATGA 59.457 37.037 19.48 2.23 44.71 2.57
2698 2868 0.630673 AAGTTGGGGGCTATGATGCA 59.369 50.000 0.00 0.00 34.04 3.96
2718 2888 1.495878 CGATCAGCACATGTAGGCTC 58.504 55.000 7.67 0.00 38.56 4.70
2731 3020 5.787953 AGCATGGATATATCTCCGATCAG 57.212 43.478 12.42 0.00 38.21 2.90
2746 3035 5.530915 GCAACACCATATACTAAAGCATGGA 59.469 40.000 6.46 0.00 40.37 3.41
2882 3172 3.003068 CAGGAAAACAGACACTGCTTCAG 59.997 47.826 0.00 0.00 34.37 3.02
2904 3194 4.146443 GCGATCAAACACTTAACAACAAGC 59.854 41.667 0.00 0.00 0.00 4.01
2905 3195 5.510671 AGCGATCAAACACTTAACAACAAG 58.489 37.500 0.00 0.00 0.00 3.16
2911 3201 6.887376 TCATAGAGCGATCAAACACTTAAC 57.113 37.500 2.38 0.00 0.00 2.01
2915 3205 6.149129 TGTATCATAGAGCGATCAAACACT 57.851 37.500 2.38 0.00 0.00 3.55
2916 3206 6.477033 AGTTGTATCATAGAGCGATCAAACAC 59.523 38.462 2.38 0.00 0.00 3.32
3017 3309 7.404671 ACTCCAAACATTTGACAAAAGTAGT 57.595 32.000 9.06 6.45 40.55 2.73
3060 3352 2.229792 TGGAAACATCCACAGCAAGAC 58.770 47.619 0.00 0.00 34.33 3.01
3105 3397 3.086282 TGCATCATTGTCACAGCTCATT 58.914 40.909 0.00 0.00 0.00 2.57
3240 3540 7.069455 ACACACTAATGACAGTAGCATATGGTA 59.931 37.037 10.55 10.55 0.00 3.25
3256 3556 4.872124 TCAGCATGCTTCTACACACTAATG 59.128 41.667 19.98 2.14 34.76 1.90
3295 3595 0.322975 ATACGATCCCCATGCTCTGC 59.677 55.000 0.00 0.00 0.00 4.26
3398 3698 6.421202 GGAATAACTAGCAACAGAGGATAACG 59.579 42.308 0.00 0.00 0.00 3.18
3400 3700 6.615726 AGGGAATAACTAGCAACAGAGGATAA 59.384 38.462 0.00 0.00 0.00 1.75
3422 3722 8.595421 GGGGAGAATTAGTTTCTAACTATAGGG 58.405 40.741 4.43 0.00 44.88 3.53
3499 3803 6.319141 ACAAGCTCTTCCAGTCAATTAAAC 57.681 37.500 0.00 0.00 0.00 2.01
3595 3899 7.975616 GCATCTTGACATTTAAGCTGGAAAATA 59.024 33.333 0.00 0.00 0.00 1.40
3710 4014 7.181125 GGTTCCCCTAATGTCATATGTCTATCT 59.819 40.741 1.90 0.00 0.00 1.98
3752 4056 6.855836 TCACTTGCAATTTATAAAGCAGGAG 58.144 36.000 21.04 15.70 38.35 3.69
3758 4062 9.674824 GGATCTGATCACTTGCAATTTATAAAG 57.325 33.333 18.64 0.00 0.00 1.85
3790 4094 2.946329 TGGCACCGTAATTAAATCGCAT 59.054 40.909 0.00 0.00 0.00 4.73
3802 4106 2.361119 GTCAGACAGATATGGCACCGTA 59.639 50.000 0.00 0.00 0.00 4.02
3805 4109 2.988010 TGTCAGACAGATATGGCACC 57.012 50.000 0.00 0.00 0.00 5.01
3817 4121 6.515272 ACATGTTTCCCAATAATGTCAGAC 57.485 37.500 0.00 0.00 0.00 3.51
3863 4167 6.946340 TCTCAAGTTATCTGAATACTGGCAA 58.054 36.000 0.00 0.00 0.00 4.52
3903 4207 9.533831 AGGGACTGATTAATCACTGTAATTTTT 57.466 29.630 14.23 0.00 37.18 1.94
3908 4212 6.374333 GCAAAGGGACTGATTAATCACTGTAA 59.626 38.462 14.23 0.00 40.86 2.41
3909 4213 5.880332 GCAAAGGGACTGATTAATCACTGTA 59.120 40.000 14.23 0.00 40.86 2.74
3917 4224 5.249780 TGGTTAGCAAAGGGACTGATTAA 57.750 39.130 0.00 0.00 40.86 1.40
3954 4261 7.356680 TGTCACCTATAGTAAAACTAGCCCTA 58.643 38.462 0.00 0.00 33.66 3.53
4208 4516 2.100197 TCAGGTCGTACATCTTCCCAG 58.900 52.381 0.00 0.00 0.00 4.45
4269 4577 2.447244 ACTTGTGAAGCGAGAAGAGG 57.553 50.000 0.00 0.00 32.82 3.69
4320 4628 6.487331 CAGGTACTCGTGTAATAGAAGAGGAT 59.513 42.308 5.49 0.00 34.60 3.24
4331 4639 1.259609 CCCACCAGGTACTCGTGTAA 58.740 55.000 0.00 0.00 46.02 2.41
4363 4671 6.323266 ACTGTAGTTGCTATCGTAGAACAAG 58.677 40.000 0.00 0.00 43.58 3.16
4372 4680 6.893958 AAATCAGAACTGTAGTTGCTATCG 57.106 37.500 1.35 0.00 38.56 2.92
4417 4725 1.912043 AGTGCCTTGCCTAGAATCTGT 59.088 47.619 0.00 0.00 0.00 3.41
4465 4773 3.192844 TGATATCCTTATCCGCGAGAACC 59.807 47.826 8.23 0.00 34.45 3.62
4567 4875 9.211485 CCAAAACTGAATCAGCTTTCATTTAAT 57.789 29.630 10.62 0.00 35.20 1.40
4575 4883 4.677673 AAGCCAAAACTGAATCAGCTTT 57.322 36.364 10.62 8.02 35.69 3.51
4593 4901 9.282247 CATGTTGAGATTTGTAATCACTAAAGC 57.718 33.333 2.60 0.00 0.00 3.51
4603 4911 6.873605 AGACGACATCATGTTGAGATTTGTAA 59.126 34.615 12.37 0.00 35.34 2.41
4604 4912 6.398095 AGACGACATCATGTTGAGATTTGTA 58.602 36.000 12.37 0.00 35.34 2.41
4614 4922 5.408604 GGTCAAAACTAGACGACATCATGTT 59.591 40.000 0.00 0.00 36.87 2.71
4620 4928 4.929808 GTGATGGTCAAAACTAGACGACAT 59.070 41.667 0.00 0.00 36.87 3.06
4673 4981 6.536582 ACACTGAAAATAACGGAGAGATCATG 59.463 38.462 0.00 0.00 0.00 3.07
4683 4991 7.274686 ACACAAAAAGAACACTGAAAATAACGG 59.725 33.333 0.00 0.00 0.00 4.44
4684 4992 8.168681 ACACAAAAAGAACACTGAAAATAACG 57.831 30.769 0.00 0.00 0.00 3.18
4719 5027 8.095169 AGTAACTGTGTAAGAGTAATTTCAGGG 58.905 37.037 0.00 0.00 40.98 4.45
4736 5044 6.919662 ACTGCAATTGATCAAAAGTAACTGTG 59.080 34.615 13.09 1.53 0.00 3.66
4745 5053 7.171167 CACCAAATGTACTGCAATTGATCAAAA 59.829 33.333 13.09 0.00 39.66 2.44
4746 5054 6.645827 CACCAAATGTACTGCAATTGATCAAA 59.354 34.615 13.09 0.00 39.66 2.69
4798 5106 1.996191 GACCACTTTCAGAGATGCGAC 59.004 52.381 0.00 0.00 0.00 5.19
4939 5247 1.369091 CCGCGGCTCTGCAATTAAGT 61.369 55.000 14.67 0.00 34.15 2.24
5063 5371 1.839994 AGGGTATAGAGCTTTGCTGCA 59.160 47.619 0.00 0.00 39.88 4.41
5098 5406 5.356190 TCTCTCCTTTAGCTTGATGCAAATG 59.644 40.000 0.00 0.00 45.94 2.32
5155 5463 1.152183 GGGAGGGGCTAACCGGATA 60.152 63.158 9.46 0.00 41.60 2.59
5161 5469 0.702316 TTGAAAGGGGAGGGGCTAAC 59.298 55.000 0.00 0.00 0.00 2.34
5174 5482 6.567050 CAAATGGGTCATACCTGATTGAAAG 58.433 40.000 0.00 0.00 38.64 2.62
5213 5521 2.194271 GAATAACCAGAGAACGAGGCG 58.806 52.381 0.00 0.00 0.00 5.52
5216 5524 5.715070 ACTTCTGAATAACCAGAGAACGAG 58.285 41.667 0.00 0.00 43.28 4.18
5226 5534 7.334421 TCAGTAAATGCAGACTTCTGAATAACC 59.666 37.037 10.54 0.00 41.33 2.85
5256 5564 6.675486 GCAAGCAAACACGATCACATAATACT 60.675 38.462 0.00 0.00 0.00 2.12
5275 5583 3.509575 CAGGTTTTGGGTATTAGCAAGCA 59.490 43.478 0.00 0.00 0.00 3.91
5308 5616 1.943116 GCTTCTGCGAGCTCCTCAGA 61.943 60.000 22.36 22.36 39.57 3.27
5433 5741 2.148768 GTCGCCCTTTATAAATCCCGG 58.851 52.381 0.00 0.00 0.00 5.73
5446 5754 4.143333 CGGATGAACGGTCGCCCT 62.143 66.667 8.94 0.00 0.00 5.19
5464 5772 0.105778 GCTGGTACCTCATCTCTGCC 59.894 60.000 14.36 0.00 0.00 4.85
5491 5799 2.953093 TTCTGGGGGTATGGTGTCTA 57.047 50.000 0.00 0.00 0.00 2.59
5507 5818 7.337942 GGTGAGAAATCCATGTTCTGTTATTCT 59.662 37.037 2.03 0.00 35.46 2.40
5533 5844 2.031069 CGACATGGAGAGGTATACCACG 60.031 54.545 23.87 7.10 38.89 4.94
5544 5855 0.813821 CAGAGAGTGCGACATGGAGA 59.186 55.000 0.00 0.00 0.00 3.71
5546 5857 0.969149 AACAGAGAGTGCGACATGGA 59.031 50.000 0.00 0.00 0.00 3.41
5615 5926 1.983691 AGAATGGGCAGATGGATCGAT 59.016 47.619 0.00 0.00 0.00 3.59
5643 5954 4.563184 GGTAAGAGAAGCAACATCACTACG 59.437 45.833 0.00 0.00 0.00 3.51
5684 5995 6.916440 TGTTATACATATAATCGCTCACCGT 58.084 36.000 0.00 0.00 38.35 4.83
5685 5996 7.987268 ATGTTATACATATAATCGCTCACCG 57.013 36.000 0.00 0.00 36.99 4.94
5699 6010 6.767902 CCTGCTTGTCCAACTATGTTATACAT 59.232 38.462 0.00 0.00 42.35 2.29
5700 6011 6.070481 TCCTGCTTGTCCAACTATGTTATACA 60.070 38.462 0.00 0.00 0.00 2.29
5701 6012 6.346096 TCCTGCTTGTCCAACTATGTTATAC 58.654 40.000 0.00 0.00 0.00 1.47
5740 6051 3.705604 AGGTGTTTGTTTCATTTCAGCG 58.294 40.909 0.00 0.00 0.00 5.18
5796 6116 4.823989 AGAAGGAAACAGAACACCAAGATG 59.176 41.667 0.00 0.00 0.00 2.90
5801 6121 3.951680 GGAAAGAAGGAAACAGAACACCA 59.048 43.478 0.00 0.00 0.00 4.17
5802 6122 3.318275 GGGAAAGAAGGAAACAGAACACC 59.682 47.826 0.00 0.00 0.00 4.16
5803 6123 3.003378 CGGGAAAGAAGGAAACAGAACAC 59.997 47.826 0.00 0.00 0.00 3.32
5804 6124 3.211045 CGGGAAAGAAGGAAACAGAACA 58.789 45.455 0.00 0.00 0.00 3.18
5805 6125 3.211865 ACGGGAAAGAAGGAAACAGAAC 58.788 45.455 0.00 0.00 0.00 3.01
5806 6126 3.570912 ACGGGAAAGAAGGAAACAGAA 57.429 42.857 0.00 0.00 0.00 3.02
5807 6127 3.644738 ACTACGGGAAAGAAGGAAACAGA 59.355 43.478 0.00 0.00 0.00 3.41
5808 6128 3.746492 CACTACGGGAAAGAAGGAAACAG 59.254 47.826 0.00 0.00 0.00 3.16
5809 6129 3.135167 ACACTACGGGAAAGAAGGAAACA 59.865 43.478 0.00 0.00 0.00 2.83
5810 6130 3.497262 CACACTACGGGAAAGAAGGAAAC 59.503 47.826 0.00 0.00 0.00 2.78
5811 6131 3.388676 TCACACTACGGGAAAGAAGGAAA 59.611 43.478 0.00 0.00 0.00 3.13
5812 6132 2.967201 TCACACTACGGGAAAGAAGGAA 59.033 45.455 0.00 0.00 0.00 3.36
5813 6133 2.561419 CTCACACTACGGGAAAGAAGGA 59.439 50.000 0.00 0.00 0.00 3.36
5814 6134 2.299297 ACTCACACTACGGGAAAGAAGG 59.701 50.000 0.00 0.00 0.00 3.46
5815 6135 3.662247 ACTCACACTACGGGAAAGAAG 57.338 47.619 0.00 0.00 0.00 2.85
5816 6136 3.057033 GCTACTCACACTACGGGAAAGAA 60.057 47.826 0.00 0.00 0.00 2.52
5817 6137 2.490903 GCTACTCACACTACGGGAAAGA 59.509 50.000 0.00 0.00 0.00 2.52
5818 6138 2.731341 CGCTACTCACACTACGGGAAAG 60.731 54.545 0.00 0.00 0.00 2.62
5819 6139 1.200716 CGCTACTCACACTACGGGAAA 59.799 52.381 0.00 0.00 0.00 3.13
5820 6140 0.806868 CGCTACTCACACTACGGGAA 59.193 55.000 0.00 0.00 0.00 3.97
5821 6141 0.036105 TCGCTACTCACACTACGGGA 60.036 55.000 0.00 0.00 0.00 5.14
5822 6142 0.098376 GTCGCTACTCACACTACGGG 59.902 60.000 0.00 0.00 0.00 5.28
5823 6143 0.247576 CGTCGCTACTCACACTACGG 60.248 60.000 0.00 0.00 0.00 4.02
5824 6144 0.441533 ACGTCGCTACTCACACTACG 59.558 55.000 0.00 0.00 35.17 3.51
5825 6145 2.240040 CAACGTCGCTACTCACACTAC 58.760 52.381 0.00 0.00 0.00 2.73
5919 6241 2.878406 CTGAAAACCAATGGACACTCGT 59.122 45.455 6.16 0.00 0.00 4.18
5926 6248 8.364142 CAATAGGTAAAACTGAAAACCAATGGA 58.636 33.333 6.16 0.00 34.29 3.41
5964 6289 3.399330 CGTGACAGGGAAAACATACTGT 58.601 45.455 0.00 0.00 45.99 3.55
5965 6290 2.159627 GCGTGACAGGGAAAACATACTG 59.840 50.000 0.00 0.00 37.01 2.74
6054 6385 6.925610 TCTAACTGCAATGCCTAAATGTAG 57.074 37.500 1.53 0.00 33.66 2.74
6071 6402 7.764443 TGATTAGCGTGCTTCTATTTTCTAACT 59.236 33.333 0.00 0.00 0.00 2.24
6241 6573 2.352651 GCGCTTGTATCTGATTCTTGCA 59.647 45.455 0.00 0.00 0.00 4.08



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.