Multiple sequence alignment - TraesCS5D01G383200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G383200 chr5D 100.000 2591 0 0 1 2591 452682775 452680185 0.000000e+00 4785.0
1 TraesCS5D01G383200 chr5B 90.967 1406 52 28 828 2185 553185895 553184517 0.000000e+00 1823.0
2 TraesCS5D01G383200 chr5B 86.811 599 54 16 170 753 553186520 553185932 0.000000e+00 645.0
3 TraesCS5D01G383200 chr5B 78.922 204 31 9 2315 2512 553182029 553181832 7.530000e-26 128.0
4 TraesCS5D01G383200 chr5B 90.741 54 5 0 2469 2522 592070539 592070486 3.580000e-09 73.1
5 TraesCS5D01G383200 chr5A 93.670 1169 49 14 872 2018 571685586 571684421 0.000000e+00 1725.0
6 TraesCS5D01G383200 chr5A 84.950 505 25 11 2007 2498 571684376 571683910 5.050000e-127 464.0
7 TraesCS5D01G383200 chr5A 80.645 496 49 24 305 781 571686290 571685823 8.880000e-90 340.0
8 TraesCS5D01G383200 chrUn 84.615 234 30 5 354 583 91107478 91107709 7.210000e-56 228.0
9 TraesCS5D01G383200 chrUn 84.615 234 31 4 354 583 135321603 135321371 7.210000e-56 228.0
10 TraesCS5D01G383200 chrUn 88.000 75 8 1 2434 2507 425570750 425570676 1.280000e-13 87.9
11 TraesCS5D01G383200 chr1B 90.698 172 14 1 2062 2231 440500437 440500608 7.210000e-56 228.0
12 TraesCS5D01G383200 chr1B 81.377 247 38 8 352 594 667683283 667683041 7.320000e-46 195.0
13 TraesCS5D01G383200 chr1B 90.476 63 5 1 2434 2495 195591267 195591205 5.940000e-12 82.4
14 TraesCS5D01G383200 chr2D 83.750 240 31 6 347 583 293712394 293712160 1.210000e-53 220.0
15 TraesCS5D01G383200 chr2A 82.329 249 39 4 350 593 183332939 183333187 7.260000e-51 211.0
16 TraesCS5D01G383200 chr7B 82.114 246 30 11 352 591 717535204 717535441 5.660000e-47 198.0
17 TraesCS5D01G383200 chr6D 81.673 251 34 10 350 594 434464281 434464525 5.660000e-47 198.0
18 TraesCS5D01G383200 chr6D 90.769 65 5 1 2434 2497 230778664 230778600 4.590000e-13 86.1
19 TraesCS5D01G383200 chr6D 89.231 65 6 1 2434 2497 58245392 58245456 2.140000e-11 80.5
20 TraesCS5D01G383200 chr6D 97.059 34 1 0 2494 2527 22075328 22075295 1.000000e-04 58.4
21 TraesCS5D01G383200 chr3D 92.308 65 4 1 2434 2497 365526051 365526115 9.870000e-15 91.6
22 TraesCS5D01G383200 chr3D 85.185 54 7 1 2496 2549 502949381 502949433 1.000000e-03 54.7
23 TraesCS5D01G383200 chr1D 90.476 63 5 1 2434 2495 141706043 141705981 5.940000e-12 82.4
24 TraesCS5D01G383200 chr1D 97.143 35 1 0 2557 2591 326583820 326583854 2.780000e-05 60.2
25 TraesCS5D01G383200 chr1D 97.059 34 1 0 2494 2527 407673119 407673086 1.000000e-04 58.4
26 TraesCS5D01G383200 chr6A 90.323 62 5 1 2434 2494 73562009 73562070 2.140000e-11 80.5
27 TraesCS5D01G383200 chr4B 89.231 65 6 1 2434 2497 270831738 270831674 2.140000e-11 80.5
28 TraesCS5D01G383200 chr4B 100.000 31 0 0 2493 2523 670441117 670441147 1.000000e-04 58.4
29 TraesCS5D01G383200 chr7A 100.000 33 0 0 2495 2527 41045001 41045033 7.740000e-06 62.1
30 TraesCS5D01G383200 chr4A 100.000 32 0 0 2496 2527 362103139 362103108 2.780000e-05 60.2
31 TraesCS5D01G383200 chr3B 87.273 55 4 3 2496 2549 664021826 664021878 2.780000e-05 60.2
32 TraesCS5D01G383200 chr1A 97.143 35 1 0 2557 2591 412226653 412226619 2.780000e-05 60.2
33 TraesCS5D01G383200 chr7D 96.970 33 1 0 2495 2527 635399040 635399072 3.600000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G383200 chr5D 452680185 452682775 2590 True 4785.000000 4785 100.000000 1 2591 1 chr5D.!!$R1 2590
1 TraesCS5D01G383200 chr5B 553181832 553186520 4688 True 865.333333 1823 85.566667 170 2512 3 chr5B.!!$R2 2342
2 TraesCS5D01G383200 chr5A 571683910 571686290 2380 True 843.000000 1725 86.421667 305 2498 3 chr5A.!!$R1 2193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 1111 0.037046 GTTTAAGCTTCCCCGGTCGA 60.037 55.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 5109 0.038166 CTTACAAGCTGCCCCCAAGA 59.962 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.099267 AGTCTTGGTCAGTTGTCTTCG 57.901 47.619 0.00 0.00 0.00 3.79
23 24 2.431057 AGTCTTGGTCAGTTGTCTTCGT 59.569 45.455 0.00 0.00 0.00 3.85
24 25 2.540101 GTCTTGGTCAGTTGTCTTCGTG 59.460 50.000 0.00 0.00 0.00 4.35
25 26 2.167693 TCTTGGTCAGTTGTCTTCGTGT 59.832 45.455 0.00 0.00 0.00 4.49
26 27 2.684001 TGGTCAGTTGTCTTCGTGTT 57.316 45.000 0.00 0.00 0.00 3.32
27 28 2.276201 TGGTCAGTTGTCTTCGTGTTG 58.724 47.619 0.00 0.00 0.00 3.33
28 29 2.277084 GGTCAGTTGTCTTCGTGTTGT 58.723 47.619 0.00 0.00 0.00 3.32
29 30 2.030457 GGTCAGTTGTCTTCGTGTTGTG 59.970 50.000 0.00 0.00 0.00 3.33
30 31 1.663643 TCAGTTGTCTTCGTGTTGTGC 59.336 47.619 0.00 0.00 0.00 4.57
31 32 1.665679 CAGTTGTCTTCGTGTTGTGCT 59.334 47.619 0.00 0.00 0.00 4.40
32 33 2.863740 CAGTTGTCTTCGTGTTGTGCTA 59.136 45.455 0.00 0.00 0.00 3.49
33 34 2.864343 AGTTGTCTTCGTGTTGTGCTAC 59.136 45.455 0.00 0.00 0.00 3.58
34 35 2.864343 GTTGTCTTCGTGTTGTGCTACT 59.136 45.455 0.00 0.00 0.00 2.57
35 36 3.994204 TGTCTTCGTGTTGTGCTACTA 57.006 42.857 0.00 0.00 0.00 1.82
36 37 3.897325 TGTCTTCGTGTTGTGCTACTAG 58.103 45.455 0.00 0.00 0.00 2.57
37 38 3.566742 TGTCTTCGTGTTGTGCTACTAGA 59.433 43.478 0.00 0.00 0.00 2.43
38 39 4.217767 TGTCTTCGTGTTGTGCTACTAGAT 59.782 41.667 0.00 0.00 0.00 1.98
39 40 4.559251 GTCTTCGTGTTGTGCTACTAGATG 59.441 45.833 0.00 0.00 0.00 2.90
40 41 4.217767 TCTTCGTGTTGTGCTACTAGATGT 59.782 41.667 0.00 0.00 0.00 3.06
41 42 4.092771 TCGTGTTGTGCTACTAGATGTC 57.907 45.455 0.00 0.00 0.00 3.06
42 43 3.756963 TCGTGTTGTGCTACTAGATGTCT 59.243 43.478 0.00 0.00 0.00 3.41
43 44 4.217767 TCGTGTTGTGCTACTAGATGTCTT 59.782 41.667 0.00 0.00 0.00 3.01
44 45 4.324669 CGTGTTGTGCTACTAGATGTCTTG 59.675 45.833 0.00 0.00 0.00 3.02
45 46 5.230942 GTGTTGTGCTACTAGATGTCTTGT 58.769 41.667 0.00 2.89 36.08 3.16
46 47 6.387465 GTGTTGTGCTACTAGATGTCTTGTA 58.613 40.000 0.00 4.68 34.09 2.41
47 48 7.036220 GTGTTGTGCTACTAGATGTCTTGTAT 58.964 38.462 0.00 0.00 34.63 2.29
48 49 7.221067 GTGTTGTGCTACTAGATGTCTTGTATC 59.779 40.741 0.00 2.75 34.63 2.24
49 50 6.392625 TGTGCTACTAGATGTCTTGTATCC 57.607 41.667 0.00 1.98 34.63 2.59
50 51 5.302059 TGTGCTACTAGATGTCTTGTATCCC 59.698 44.000 0.00 0.00 34.63 3.85
51 52 4.519350 TGCTACTAGATGTCTTGTATCCCG 59.481 45.833 0.00 0.00 34.63 5.14
52 53 4.519730 GCTACTAGATGTCTTGTATCCCGT 59.480 45.833 0.00 0.00 34.63 5.28
53 54 4.920640 ACTAGATGTCTTGTATCCCGTG 57.079 45.455 0.00 0.00 30.50 4.94
54 55 3.637229 ACTAGATGTCTTGTATCCCGTGG 59.363 47.826 0.00 0.00 30.50 4.94
55 56 2.467880 AGATGTCTTGTATCCCGTGGT 58.532 47.619 0.00 0.00 0.00 4.16
56 57 2.431057 AGATGTCTTGTATCCCGTGGTC 59.569 50.000 0.00 0.00 0.00 4.02
57 58 1.634960 TGTCTTGTATCCCGTGGTCA 58.365 50.000 0.00 0.00 0.00 4.02
58 59 1.274167 TGTCTTGTATCCCGTGGTCAC 59.726 52.381 0.00 0.00 0.00 3.67
59 60 1.274167 GTCTTGTATCCCGTGGTCACA 59.726 52.381 1.90 0.00 0.00 3.58
60 61 2.093658 GTCTTGTATCCCGTGGTCACAT 60.094 50.000 1.90 0.00 0.00 3.21
61 62 2.167693 TCTTGTATCCCGTGGTCACATC 59.832 50.000 1.90 0.00 0.00 3.06
62 63 0.458260 TGTATCCCGTGGTCACATCG 59.542 55.000 1.90 0.00 0.00 3.84
63 64 0.874607 GTATCCCGTGGTCACATCGC 60.875 60.000 1.90 0.00 0.00 4.58
64 65 1.324005 TATCCCGTGGTCACATCGCA 61.324 55.000 1.90 0.00 0.00 5.10
65 66 2.178876 ATCCCGTGGTCACATCGCAA 62.179 55.000 1.90 0.00 0.00 4.85
66 67 2.677003 CCCGTGGTCACATCGCAAC 61.677 63.158 1.90 0.00 0.00 4.17
67 68 1.667830 CCGTGGTCACATCGCAACT 60.668 57.895 1.90 0.00 0.00 3.16
68 69 1.492873 CGTGGTCACATCGCAACTG 59.507 57.895 1.90 0.00 0.00 3.16
69 70 0.943835 CGTGGTCACATCGCAACTGA 60.944 55.000 1.90 0.00 0.00 3.41
70 71 1.442769 GTGGTCACATCGCAACTGAT 58.557 50.000 0.00 0.00 0.00 2.90
71 72 2.616960 GTGGTCACATCGCAACTGATA 58.383 47.619 0.00 0.00 0.00 2.15
72 73 2.348666 GTGGTCACATCGCAACTGATAC 59.651 50.000 0.00 0.00 0.00 2.24
73 74 2.028567 TGGTCACATCGCAACTGATACA 60.029 45.455 0.00 0.00 0.00 2.29
74 75 3.000041 GGTCACATCGCAACTGATACAA 59.000 45.455 0.00 0.00 0.00 2.41
75 76 3.435327 GGTCACATCGCAACTGATACAAA 59.565 43.478 0.00 0.00 0.00 2.83
76 77 4.436050 GGTCACATCGCAACTGATACAAAG 60.436 45.833 0.00 0.00 0.00 2.77
77 78 3.125146 TCACATCGCAACTGATACAAAGC 59.875 43.478 0.00 0.00 0.00 3.51
78 79 2.420022 ACATCGCAACTGATACAAAGCC 59.580 45.455 0.00 0.00 0.00 4.35
79 80 2.177394 TCGCAACTGATACAAAGCCA 57.823 45.000 0.00 0.00 0.00 4.75
80 81 1.804151 TCGCAACTGATACAAAGCCAC 59.196 47.619 0.00 0.00 0.00 5.01
81 82 1.535028 CGCAACTGATACAAAGCCACA 59.465 47.619 0.00 0.00 0.00 4.17
82 83 2.162208 CGCAACTGATACAAAGCCACAT 59.838 45.455 0.00 0.00 0.00 3.21
83 84 3.728864 CGCAACTGATACAAAGCCACATC 60.729 47.826 0.00 0.00 0.00 3.06
84 85 3.441572 GCAACTGATACAAAGCCACATCT 59.558 43.478 0.00 0.00 0.00 2.90
85 86 4.673580 GCAACTGATACAAAGCCACATCTG 60.674 45.833 0.00 0.00 0.00 2.90
86 87 4.558226 ACTGATACAAAGCCACATCTGA 57.442 40.909 0.00 0.00 0.00 3.27
87 88 4.256920 ACTGATACAAAGCCACATCTGAC 58.743 43.478 0.00 0.00 0.00 3.51
88 89 3.609853 TGATACAAAGCCACATCTGACC 58.390 45.455 0.00 0.00 0.00 4.02
89 90 3.264193 TGATACAAAGCCACATCTGACCT 59.736 43.478 0.00 0.00 0.00 3.85
90 91 4.469586 TGATACAAAGCCACATCTGACCTA 59.530 41.667 0.00 0.00 0.00 3.08
91 92 3.059352 ACAAAGCCACATCTGACCTAC 57.941 47.619 0.00 0.00 0.00 3.18
92 93 2.290323 ACAAAGCCACATCTGACCTACC 60.290 50.000 0.00 0.00 0.00 3.18
93 94 0.912486 AAGCCACATCTGACCTACCC 59.088 55.000 0.00 0.00 0.00 3.69
94 95 0.043334 AGCCACATCTGACCTACCCT 59.957 55.000 0.00 0.00 0.00 4.34
95 96 0.466124 GCCACATCTGACCTACCCTC 59.534 60.000 0.00 0.00 0.00 4.30
96 97 1.967274 GCCACATCTGACCTACCCTCT 60.967 57.143 0.00 0.00 0.00 3.69
97 98 2.690026 GCCACATCTGACCTACCCTCTA 60.690 54.545 0.00 0.00 0.00 2.43
98 99 3.226777 CCACATCTGACCTACCCTCTAG 58.773 54.545 0.00 0.00 0.00 2.43
99 100 3.117474 CCACATCTGACCTACCCTCTAGA 60.117 52.174 0.00 0.00 0.00 2.43
100 101 4.448493 CCACATCTGACCTACCCTCTAGAT 60.448 50.000 0.00 0.00 0.00 1.98
101 102 4.522405 CACATCTGACCTACCCTCTAGATG 59.478 50.000 0.00 0.00 44.23 2.90
102 103 4.417183 ACATCTGACCTACCCTCTAGATGA 59.583 45.833 16.28 0.00 42.38 2.92
103 104 5.103473 ACATCTGACCTACCCTCTAGATGAA 60.103 44.000 16.28 0.00 42.38 2.57
104 105 5.055265 TCTGACCTACCCTCTAGATGAAG 57.945 47.826 0.00 0.00 0.00 3.02
105 106 4.479056 TCTGACCTACCCTCTAGATGAAGT 59.521 45.833 0.00 0.00 0.00 3.01
106 107 5.044030 TCTGACCTACCCTCTAGATGAAGTT 60.044 44.000 0.00 0.00 0.00 2.66
107 108 6.159928 TCTGACCTACCCTCTAGATGAAGTTA 59.840 42.308 0.00 0.00 0.00 2.24
108 109 6.366340 TGACCTACCCTCTAGATGAAGTTAG 58.634 44.000 0.00 0.00 0.00 2.34
109 110 5.707495 ACCTACCCTCTAGATGAAGTTAGG 58.293 45.833 0.00 1.24 0.00 2.69
110 111 5.435707 ACCTACCCTCTAGATGAAGTTAGGA 59.564 44.000 13.09 0.00 0.00 2.94
111 112 5.771165 CCTACCCTCTAGATGAAGTTAGGAC 59.229 48.000 0.00 0.00 0.00 3.85
112 113 5.208294 ACCCTCTAGATGAAGTTAGGACA 57.792 43.478 0.00 0.00 0.00 4.02
113 114 5.782925 ACCCTCTAGATGAAGTTAGGACAT 58.217 41.667 0.00 0.00 0.00 3.06
114 115 5.600484 ACCCTCTAGATGAAGTTAGGACATG 59.400 44.000 0.00 0.00 0.00 3.21
115 116 5.600484 CCCTCTAGATGAAGTTAGGACATGT 59.400 44.000 0.00 0.00 0.00 3.21
116 117 6.098982 CCCTCTAGATGAAGTTAGGACATGTT 59.901 42.308 0.00 0.00 0.00 2.71
117 118 7.365117 CCCTCTAGATGAAGTTAGGACATGTTT 60.365 40.741 0.00 0.00 0.00 2.83
118 119 7.708752 CCTCTAGATGAAGTTAGGACATGTTTC 59.291 40.741 0.00 0.00 0.00 2.78
119 120 8.367660 TCTAGATGAAGTTAGGACATGTTTCT 57.632 34.615 0.00 3.79 0.00 2.52
120 121 9.475620 TCTAGATGAAGTTAGGACATGTTTCTA 57.524 33.333 0.00 2.74 0.00 2.10
121 122 9.522804 CTAGATGAAGTTAGGACATGTTTCTAC 57.477 37.037 0.00 0.00 0.00 2.59
122 123 8.140112 AGATGAAGTTAGGACATGTTTCTACT 57.860 34.615 0.00 0.00 0.00 2.57
123 124 9.256228 AGATGAAGTTAGGACATGTTTCTACTA 57.744 33.333 0.00 0.00 0.00 1.82
125 126 9.823647 ATGAAGTTAGGACATGTTTCTACTATG 57.176 33.333 0.00 0.00 0.00 2.23
126 127 8.258007 TGAAGTTAGGACATGTTTCTACTATGG 58.742 37.037 0.00 0.00 0.00 2.74
127 128 7.735326 AGTTAGGACATGTTTCTACTATGGT 57.265 36.000 0.00 0.00 0.00 3.55
128 129 7.556844 AGTTAGGACATGTTTCTACTATGGTG 58.443 38.462 0.00 0.00 0.00 4.17
129 130 7.180408 AGTTAGGACATGTTTCTACTATGGTGT 59.820 37.037 0.00 0.00 0.00 4.16
130 131 5.978814 AGGACATGTTTCTACTATGGTGTC 58.021 41.667 0.00 0.00 35.28 3.67
131 132 4.804139 GGACATGTTTCTACTATGGTGTCG 59.196 45.833 0.00 0.00 36.49 4.35
132 133 5.393787 GGACATGTTTCTACTATGGTGTCGA 60.394 44.000 0.00 0.00 36.49 4.20
133 134 6.222038 ACATGTTTCTACTATGGTGTCGAT 57.778 37.500 0.00 0.00 0.00 3.59
134 135 7.342769 ACATGTTTCTACTATGGTGTCGATA 57.657 36.000 0.00 0.00 0.00 2.92
135 136 7.778083 ACATGTTTCTACTATGGTGTCGATAA 58.222 34.615 0.00 0.00 0.00 1.75
136 137 7.705325 ACATGTTTCTACTATGGTGTCGATAAC 59.295 37.037 0.00 0.00 0.00 1.89
137 138 7.160547 TGTTTCTACTATGGTGTCGATAACA 57.839 36.000 1.17 1.17 34.78 2.41
148 149 3.857052 TGTCGATAACACCAATCCTGAC 58.143 45.455 0.00 0.00 31.20 3.51
149 150 3.513912 TGTCGATAACACCAATCCTGACT 59.486 43.478 0.00 0.00 31.20 3.41
150 151 4.707934 TGTCGATAACACCAATCCTGACTA 59.292 41.667 0.00 0.00 31.20 2.59
151 152 5.362717 TGTCGATAACACCAATCCTGACTAT 59.637 40.000 0.00 0.00 31.20 2.12
152 153 6.548251 TGTCGATAACACCAATCCTGACTATA 59.452 38.462 0.00 0.00 31.20 1.31
153 154 7.068962 TGTCGATAACACCAATCCTGACTATAA 59.931 37.037 0.00 0.00 31.20 0.98
154 155 7.381678 GTCGATAACACCAATCCTGACTATAAC 59.618 40.741 0.00 0.00 0.00 1.89
155 156 6.645415 CGATAACACCAATCCTGACTATAACC 59.355 42.308 0.00 0.00 0.00 2.85
156 157 4.772886 ACACCAATCCTGACTATAACCC 57.227 45.455 0.00 0.00 0.00 4.11
157 158 4.371681 ACACCAATCCTGACTATAACCCT 58.628 43.478 0.00 0.00 0.00 4.34
158 159 4.409247 ACACCAATCCTGACTATAACCCTC 59.591 45.833 0.00 0.00 0.00 4.30
159 160 4.408921 CACCAATCCTGACTATAACCCTCA 59.591 45.833 0.00 0.00 0.00 3.86
160 161 5.072329 CACCAATCCTGACTATAACCCTCAT 59.928 44.000 0.00 0.00 0.00 2.90
161 162 5.672194 ACCAATCCTGACTATAACCCTCATT 59.328 40.000 0.00 0.00 0.00 2.57
162 163 6.160459 ACCAATCCTGACTATAACCCTCATTT 59.840 38.462 0.00 0.00 0.00 2.32
163 164 7.062957 CCAATCCTGACTATAACCCTCATTTT 58.937 38.462 0.00 0.00 0.00 1.82
164 165 7.013655 CCAATCCTGACTATAACCCTCATTTTG 59.986 40.741 0.00 0.00 0.00 2.44
165 166 6.884472 TCCTGACTATAACCCTCATTTTGA 57.116 37.500 0.00 0.00 0.00 2.69
166 167 7.265599 TCCTGACTATAACCCTCATTTTGAA 57.734 36.000 0.00 0.00 0.00 2.69
167 168 7.110155 TCCTGACTATAACCCTCATTTTGAAC 58.890 38.462 0.00 0.00 0.00 3.18
168 169 6.318900 CCTGACTATAACCCTCATTTTGAACC 59.681 42.308 0.00 0.00 0.00 3.62
174 175 9.421399 CTATAACCCTCATTTTGAACCCTTAAT 57.579 33.333 0.00 0.00 0.00 1.40
181 182 8.585018 CCTCATTTTGAACCCTTAATTGTAACT 58.415 33.333 0.00 0.00 0.00 2.24
182 183 9.410556 CTCATTTTGAACCCTTAATTGTAACTG 57.589 33.333 0.00 0.00 0.00 3.16
198 199 4.314440 TGTGGCTGGAGTGGCGAC 62.314 66.667 0.00 0.00 38.55 5.19
204 205 1.639298 GCTGGAGTGGCGACATCAAC 61.639 60.000 0.00 0.00 46.14 3.18
259 260 7.750947 AAACACCTAGGGAACTATAGAACAT 57.249 36.000 14.81 0.00 43.39 2.71
271 272 9.347934 GGAACTATAGAACATAATCGACATGAG 57.652 37.037 14.14 4.36 0.00 2.90
280 281 0.392998 ATCGACATGAGCCACCCAAC 60.393 55.000 0.00 0.00 0.00 3.77
281 282 2.040544 CGACATGAGCCACCCAACC 61.041 63.158 0.00 0.00 0.00 3.77
283 284 1.228552 ACATGAGCCACCCAACCAC 60.229 57.895 0.00 0.00 0.00 4.16
286 287 0.998928 ATGAGCCACCCAACCACATA 59.001 50.000 0.00 0.00 0.00 2.29
288 289 1.145945 TGAGCCACCCAACCACATAAA 59.854 47.619 0.00 0.00 0.00 1.40
289 290 2.243810 GAGCCACCCAACCACATAAAA 58.756 47.619 0.00 0.00 0.00 1.52
290 291 2.231235 GAGCCACCCAACCACATAAAAG 59.769 50.000 0.00 0.00 0.00 2.27
303 304 5.072600 ACCACATAAAAGTACAAGAGGACCA 59.927 40.000 0.00 0.00 0.00 4.02
345 349 2.124011 AAAAAGACACGCTGCATGTG 57.876 45.000 5.91 15.46 42.99 3.21
411 419 3.738791 GGCAACTCCAAACGTTTTTATGG 59.261 43.478 11.66 10.69 34.01 2.74
428 436 3.855689 ATGGCAAGTTTAGTGATGTGC 57.144 42.857 0.00 0.00 0.00 4.57
434 442 4.406069 CAAGTTTAGTGATGTGCGAATGG 58.594 43.478 0.00 0.00 0.00 3.16
582 595 4.378356 CCACACGTGTCACTTATCATTTGG 60.378 45.833 20.49 8.44 0.00 3.28
619 632 8.375506 TGTTATTTCTGATGTTCCTTCTACTGT 58.624 33.333 0.00 0.00 0.00 3.55
629 642 9.383519 GATGTTCCTTCTACTGTCATGATAAAA 57.616 33.333 0.00 0.00 0.00 1.52
630 643 8.547967 TGTTCCTTCTACTGTCATGATAAAAC 57.452 34.615 0.00 0.00 0.00 2.43
631 644 8.154203 TGTTCCTTCTACTGTCATGATAAAACA 58.846 33.333 0.00 0.00 0.00 2.83
781 806 0.173481 CACGATGCCGAAAGAGGAGA 59.827 55.000 0.00 0.00 39.50 3.71
782 807 0.895530 ACGATGCCGAAAGAGGAGAA 59.104 50.000 0.00 0.00 39.50 2.87
783 808 1.281899 CGATGCCGAAAGAGGAGAAC 58.718 55.000 0.00 0.00 38.22 3.01
784 809 1.134965 CGATGCCGAAAGAGGAGAACT 60.135 52.381 0.00 0.00 38.22 3.01
785 810 2.099263 CGATGCCGAAAGAGGAGAACTA 59.901 50.000 0.00 0.00 38.22 2.24
786 811 3.712187 GATGCCGAAAGAGGAGAACTAG 58.288 50.000 0.00 0.00 0.00 2.57
787 812 2.526432 TGCCGAAAGAGGAGAACTAGT 58.474 47.619 0.00 0.00 0.00 2.57
788 813 2.492484 TGCCGAAAGAGGAGAACTAGTC 59.508 50.000 0.00 0.00 0.00 2.59
805 830 1.134340 AGTCCACCACGCACAAAAGTA 60.134 47.619 0.00 0.00 0.00 2.24
806 831 1.003223 GTCCACCACGCACAAAAGTAC 60.003 52.381 0.00 0.00 0.00 2.73
807 832 1.018148 CCACCACGCACAAAAGTACA 58.982 50.000 0.00 0.00 0.00 2.90
809 834 2.809119 CCACCACGCACAAAAGTACATA 59.191 45.455 0.00 0.00 0.00 2.29
812 837 5.086058 CACCACGCACAAAAGTACATATTC 58.914 41.667 0.00 0.00 0.00 1.75
814 839 5.121768 ACCACGCACAAAAGTACATATTCTC 59.878 40.000 0.00 0.00 0.00 2.87
815 840 5.121611 CCACGCACAAAAGTACATATTCTCA 59.878 40.000 0.00 0.00 0.00 3.27
816 841 6.348132 CCACGCACAAAAGTACATATTCTCAA 60.348 38.462 0.00 0.00 0.00 3.02
817 842 7.075121 CACGCACAAAAGTACATATTCTCAAA 58.925 34.615 0.00 0.00 0.00 2.69
818 843 7.589587 CACGCACAAAAGTACATATTCTCAAAA 59.410 33.333 0.00 0.00 0.00 2.44
939 1110 1.022982 GGTTTAAGCTTCCCCGGTCG 61.023 60.000 0.00 0.00 0.00 4.79
940 1111 0.037046 GTTTAAGCTTCCCCGGTCGA 60.037 55.000 0.00 0.00 0.00 4.20
1075 1246 3.562973 CGATCCACCATCCAAAGAAGATG 59.437 47.826 0.00 0.00 40.71 2.90
1076 1247 2.726821 TCCACCATCCAAAGAAGATGC 58.273 47.619 0.00 0.00 39.87 3.91
1078 1249 1.753073 CACCATCCAAAGAAGATGCCC 59.247 52.381 0.00 0.00 39.87 5.36
1148 1346 1.073199 CACCGGCAAAGGAAGAGGT 59.927 57.895 0.00 0.00 34.73 3.85
1581 1794 1.330655 TGGTGGCGAAGGAGGATCTC 61.331 60.000 0.00 0.00 33.73 2.75
1673 1886 9.921637 GATGTGAATTATTTTGTTTTACCTGGA 57.078 29.630 0.00 0.00 0.00 3.86
1698 1912 3.635268 CTGCAAGGTGGGAGAGGGC 62.635 68.421 0.00 0.00 0.00 5.19
1715 1929 1.308783 GGCGGCCTCTCCAAGAAAAG 61.309 60.000 12.87 0.00 34.01 2.27
1855 2069 4.983671 TTAGCTCTCGTGCTGATCTTAA 57.016 40.909 0.00 0.00 43.87 1.85
1960 2177 2.423892 TGAGTGAGCACTAATCTCCGTC 59.576 50.000 2.65 0.00 42.66 4.79
2050 2323 7.496591 ACATTTGTCAGTGAATTTTGAGCAATT 59.503 29.630 0.00 0.00 0.00 2.32
2084 2368 3.325870 CCGTTTAGTGTCTGAATCAGCA 58.674 45.455 5.18 4.40 0.00 4.41
2104 2388 0.250234 GTGCTGAGGCTGTCCATACA 59.750 55.000 0.00 0.00 39.59 2.29
2198 2482 8.055181 ACACAGTTATAAACATGGGATTCTCAT 58.945 33.333 0.00 0.00 0.00 2.90
2224 2508 7.642669 AGAATGATTTGCTTGGTTATACATCG 58.357 34.615 0.00 0.00 0.00 3.84
2225 2509 5.168526 TGATTTGCTTGGTTATACATCGC 57.831 39.130 0.00 0.00 0.00 4.58
2226 2510 4.036262 TGATTTGCTTGGTTATACATCGCC 59.964 41.667 0.00 0.00 0.00 5.54
2227 2511 2.700722 TGCTTGGTTATACATCGCCA 57.299 45.000 0.00 0.00 0.00 5.69
2228 2512 3.207265 TGCTTGGTTATACATCGCCAT 57.793 42.857 0.00 0.00 0.00 4.40
2229 2513 3.550820 TGCTTGGTTATACATCGCCATT 58.449 40.909 0.00 0.00 0.00 3.16
2230 2514 3.951037 TGCTTGGTTATACATCGCCATTT 59.049 39.130 0.00 0.00 0.00 2.32
2231 2515 4.202000 TGCTTGGTTATACATCGCCATTTG 60.202 41.667 0.00 0.00 0.00 2.32
2232 2516 4.792704 GCTTGGTTATACATCGCCATTTGG 60.793 45.833 0.00 0.00 38.53 3.28
2233 2517 3.892284 TGGTTATACATCGCCATTTGGT 58.108 40.909 0.00 0.00 37.57 3.67
2234 2518 4.274147 TGGTTATACATCGCCATTTGGTT 58.726 39.130 0.00 0.00 37.57 3.67
2235 2519 5.437946 TGGTTATACATCGCCATTTGGTTA 58.562 37.500 0.00 0.00 37.57 2.85
2236 2520 6.065374 TGGTTATACATCGCCATTTGGTTAT 58.935 36.000 0.00 0.00 37.57 1.89
2237 2521 7.225011 TGGTTATACATCGCCATTTGGTTATA 58.775 34.615 0.00 0.00 37.57 0.98
2238 2522 7.173562 TGGTTATACATCGCCATTTGGTTATAC 59.826 37.037 0.00 0.00 37.57 1.47
2239 2523 7.173562 GGTTATACATCGCCATTTGGTTATACA 59.826 37.037 0.00 0.00 37.57 2.29
2240 2524 8.726988 GTTATACATCGCCATTTGGTTATACAT 58.273 33.333 0.00 0.00 37.57 2.29
2241 2525 7.759489 ATACATCGCCATTTGGTTATACATT 57.241 32.000 0.00 0.00 37.57 2.71
2277 2561 1.228124 GCTGGTGTTACCCTGTGCA 60.228 57.895 0.00 0.00 37.50 4.57
2281 3342 1.423541 TGGTGTTACCCTGTGCATCTT 59.576 47.619 0.00 0.00 37.50 2.40
2282 3343 1.812571 GGTGTTACCCTGTGCATCTTG 59.187 52.381 0.00 0.00 30.04 3.02
2294 3355 1.761784 TGCATCTTGTTGGCCTTGTTT 59.238 42.857 3.32 0.00 0.00 2.83
2295 3356 2.137523 GCATCTTGTTGGCCTTGTTTG 58.862 47.619 3.32 0.00 0.00 2.93
2296 3357 2.137523 CATCTTGTTGGCCTTGTTTGC 58.862 47.619 3.32 0.00 0.00 3.68
2388 5100 3.066621 TGAATTGAAAGTTTCTGCTGCGT 59.933 39.130 16.33 0.00 0.00 5.24
2389 5101 3.715628 ATTGAAAGTTTCTGCTGCGTT 57.284 38.095 16.33 0.00 0.00 4.84
2390 5102 3.502191 TTGAAAGTTTCTGCTGCGTTT 57.498 38.095 16.33 0.00 0.00 3.60
2391 5103 3.065019 TGAAAGTTTCTGCTGCGTTTC 57.935 42.857 16.33 0.00 0.00 2.78
2392 5104 2.682856 TGAAAGTTTCTGCTGCGTTTCT 59.317 40.909 16.33 0.00 0.00 2.52
2393 5105 2.763249 AAGTTTCTGCTGCGTTTCTG 57.237 45.000 0.00 0.00 0.00 3.02
2394 5106 1.668419 AGTTTCTGCTGCGTTTCTGT 58.332 45.000 0.00 0.00 0.00 3.41
2395 5107 2.833794 AGTTTCTGCTGCGTTTCTGTA 58.166 42.857 0.00 0.00 0.00 2.74
2396 5108 3.403038 AGTTTCTGCTGCGTTTCTGTAT 58.597 40.909 0.00 0.00 0.00 2.29
2397 5109 3.815401 AGTTTCTGCTGCGTTTCTGTATT 59.185 39.130 0.00 0.00 0.00 1.89
2398 5110 4.083802 AGTTTCTGCTGCGTTTCTGTATTC 60.084 41.667 0.00 0.00 0.00 1.75
2399 5111 3.319137 TCTGCTGCGTTTCTGTATTCT 57.681 42.857 0.00 0.00 0.00 2.40
2400 5112 3.664107 TCTGCTGCGTTTCTGTATTCTT 58.336 40.909 0.00 0.00 0.00 2.52
2401 5113 3.433274 TCTGCTGCGTTTCTGTATTCTTG 59.567 43.478 0.00 0.00 0.00 3.02
2402 5114 2.483877 TGCTGCGTTTCTGTATTCTTGG 59.516 45.455 0.00 0.00 0.00 3.61
2465 5193 7.913674 TGTTTTGGCAGTTCAATTTAAACTT 57.086 28.000 7.05 0.00 34.79 2.66
2514 5243 5.361630 AGGTACTCCCTCTGATCCATATT 57.638 43.478 0.00 0.00 40.71 1.28
2515 5244 6.485388 AGGTACTCCCTCTGATCCATATTA 57.515 41.667 0.00 0.00 40.71 0.98
2516 5245 6.257586 AGGTACTCCCTCTGATCCATATTAC 58.742 44.000 0.00 0.00 40.71 1.89
2517 5246 6.047359 AGGTACTCCCTCTGATCCATATTACT 59.953 42.308 0.00 0.00 40.71 2.24
2518 5247 6.726764 GGTACTCCCTCTGATCCATATTACTT 59.273 42.308 0.00 0.00 0.00 2.24
2519 5248 6.678568 ACTCCCTCTGATCCATATTACTTG 57.321 41.667 0.00 0.00 0.00 3.16
2520 5249 6.146760 ACTCCCTCTGATCCATATTACTTGT 58.853 40.000 0.00 0.00 0.00 3.16
2521 5250 6.268847 ACTCCCTCTGATCCATATTACTTGTC 59.731 42.308 0.00 0.00 0.00 3.18
2522 5251 6.143206 TCCCTCTGATCCATATTACTTGTCA 58.857 40.000 0.00 0.00 0.00 3.58
2523 5252 6.042093 TCCCTCTGATCCATATTACTTGTCAC 59.958 42.308 0.00 0.00 0.00 3.67
2524 5253 6.042552 CCCTCTGATCCATATTACTTGTCACT 59.957 42.308 0.00 0.00 0.00 3.41
2525 5254 7.151308 CCTCTGATCCATATTACTTGTCACTC 58.849 42.308 0.00 0.00 0.00 3.51
2526 5255 7.201947 CCTCTGATCCATATTACTTGTCACTCA 60.202 40.741 0.00 0.00 0.00 3.41
2527 5256 7.492524 TCTGATCCATATTACTTGTCACTCAC 58.507 38.462 0.00 0.00 0.00 3.51
2528 5257 7.343057 TCTGATCCATATTACTTGTCACTCACT 59.657 37.037 0.00 0.00 0.00 3.41
2529 5258 7.851228 TGATCCATATTACTTGTCACTCACTT 58.149 34.615 0.00 0.00 0.00 3.16
2530 5259 8.977412 TGATCCATATTACTTGTCACTCACTTA 58.023 33.333 0.00 0.00 0.00 2.24
2531 5260 9.817809 GATCCATATTACTTGTCACTCACTTAA 57.182 33.333 0.00 0.00 0.00 1.85
2568 5297 9.765795 ATATTAATTGAGTAGTACCAGTTCTGC 57.234 33.333 0.00 0.00 0.00 4.26
2569 5298 3.570926 TTGAGTAGTACCAGTTCTGCG 57.429 47.619 0.00 0.00 0.00 5.18
2570 5299 2.511659 TGAGTAGTACCAGTTCTGCGT 58.488 47.619 0.00 0.00 0.00 5.24
2571 5300 2.889045 TGAGTAGTACCAGTTCTGCGTT 59.111 45.455 0.00 0.00 0.00 4.84
2572 5301 3.319972 TGAGTAGTACCAGTTCTGCGTTT 59.680 43.478 0.00 0.00 0.00 3.60
2573 5302 3.910648 AGTAGTACCAGTTCTGCGTTTC 58.089 45.455 0.00 0.00 0.00 2.78
2574 5303 3.573110 AGTAGTACCAGTTCTGCGTTTCT 59.427 43.478 0.00 1.34 0.00 2.52
2575 5304 2.755650 AGTACCAGTTCTGCGTTTCTG 58.244 47.619 0.00 0.00 0.00 3.02
2576 5305 2.364324 AGTACCAGTTCTGCGTTTCTGA 59.636 45.455 0.00 0.00 0.00 3.27
2577 5306 2.325583 ACCAGTTCTGCGTTTCTGAA 57.674 45.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.098960 ACGAAGACAACTGACCAAGACTTA 59.901 41.667 0.00 0.00 0.00 2.24
1 2 3.118738 ACGAAGACAACTGACCAAGACTT 60.119 43.478 0.00 0.00 0.00 3.01
2 3 2.431057 ACGAAGACAACTGACCAAGACT 59.569 45.455 0.00 0.00 0.00 3.24
3 4 2.540101 CACGAAGACAACTGACCAAGAC 59.460 50.000 0.00 0.00 0.00 3.01
4 5 2.167693 ACACGAAGACAACTGACCAAGA 59.832 45.455 0.00 0.00 0.00 3.02
5 6 2.550978 ACACGAAGACAACTGACCAAG 58.449 47.619 0.00 0.00 0.00 3.61
6 7 2.675844 CAACACGAAGACAACTGACCAA 59.324 45.455 0.00 0.00 0.00 3.67
7 8 2.276201 CAACACGAAGACAACTGACCA 58.724 47.619 0.00 0.00 0.00 4.02
8 9 2.030457 CACAACACGAAGACAACTGACC 59.970 50.000 0.00 0.00 0.00 4.02
9 10 2.536928 GCACAACACGAAGACAACTGAC 60.537 50.000 0.00 0.00 0.00 3.51
10 11 1.663643 GCACAACACGAAGACAACTGA 59.336 47.619 0.00 0.00 0.00 3.41
11 12 1.665679 AGCACAACACGAAGACAACTG 59.334 47.619 0.00 0.00 0.00 3.16
12 13 2.024176 AGCACAACACGAAGACAACT 57.976 45.000 0.00 0.00 0.00 3.16
13 14 2.864343 AGTAGCACAACACGAAGACAAC 59.136 45.455 0.00 0.00 0.00 3.32
14 15 3.173668 AGTAGCACAACACGAAGACAA 57.826 42.857 0.00 0.00 0.00 3.18
15 16 2.882927 AGTAGCACAACACGAAGACA 57.117 45.000 0.00 0.00 0.00 3.41
16 17 4.156664 TCTAGTAGCACAACACGAAGAC 57.843 45.455 0.00 0.00 0.00 3.01
17 18 4.217767 ACATCTAGTAGCACAACACGAAGA 59.782 41.667 0.00 0.00 0.00 2.87
18 19 4.486090 ACATCTAGTAGCACAACACGAAG 58.514 43.478 0.00 0.00 0.00 3.79
19 20 4.217767 AGACATCTAGTAGCACAACACGAA 59.782 41.667 0.00 0.00 0.00 3.85
20 21 3.756963 AGACATCTAGTAGCACAACACGA 59.243 43.478 0.00 0.00 0.00 4.35
21 22 4.098055 AGACATCTAGTAGCACAACACG 57.902 45.455 0.00 0.00 0.00 4.49
22 23 5.230942 ACAAGACATCTAGTAGCACAACAC 58.769 41.667 0.00 0.00 0.00 3.32
23 24 5.468540 ACAAGACATCTAGTAGCACAACA 57.531 39.130 0.00 0.00 0.00 3.33
24 25 6.697892 GGATACAAGACATCTAGTAGCACAAC 59.302 42.308 0.00 0.00 0.00 3.32
25 26 6.183360 GGGATACAAGACATCTAGTAGCACAA 60.183 42.308 0.00 0.00 39.74 3.33
26 27 5.302059 GGGATACAAGACATCTAGTAGCACA 59.698 44.000 0.00 0.00 39.74 4.57
27 28 5.563085 CGGGATACAAGACATCTAGTAGCAC 60.563 48.000 0.00 0.00 39.74 4.40
28 29 4.519350 CGGGATACAAGACATCTAGTAGCA 59.481 45.833 0.00 0.00 39.74 3.49
29 30 4.519730 ACGGGATACAAGACATCTAGTAGC 59.480 45.833 0.00 0.00 39.74 3.58
30 31 5.048643 CCACGGGATACAAGACATCTAGTAG 60.049 48.000 0.00 0.00 39.74 2.57
31 32 4.825634 CCACGGGATACAAGACATCTAGTA 59.174 45.833 0.00 0.00 39.74 1.82
32 33 3.637229 CCACGGGATACAAGACATCTAGT 59.363 47.826 0.00 0.00 39.74 2.57
33 34 3.637229 ACCACGGGATACAAGACATCTAG 59.363 47.826 0.00 0.00 39.74 2.43
34 35 3.635373 GACCACGGGATACAAGACATCTA 59.365 47.826 0.00 0.00 39.74 1.98
35 36 2.431057 GACCACGGGATACAAGACATCT 59.569 50.000 0.00 0.00 39.74 2.90
36 37 2.167693 TGACCACGGGATACAAGACATC 59.832 50.000 0.00 0.00 39.74 3.06
37 38 2.093658 GTGACCACGGGATACAAGACAT 60.094 50.000 0.00 0.00 39.74 3.06
38 39 1.274167 GTGACCACGGGATACAAGACA 59.726 52.381 0.00 0.00 39.74 3.41
39 40 1.274167 TGTGACCACGGGATACAAGAC 59.726 52.381 0.00 0.00 39.74 3.01
40 41 1.634960 TGTGACCACGGGATACAAGA 58.365 50.000 0.00 0.00 39.74 3.02
41 42 2.550978 GATGTGACCACGGGATACAAG 58.449 52.381 0.00 0.00 39.74 3.16
42 43 1.134936 CGATGTGACCACGGGATACAA 60.135 52.381 0.00 0.00 39.74 2.41
43 44 0.458260 CGATGTGACCACGGGATACA 59.542 55.000 0.00 0.00 39.74 2.29
44 45 0.874607 GCGATGTGACCACGGGATAC 60.875 60.000 0.00 0.00 0.00 2.24
45 46 1.324005 TGCGATGTGACCACGGGATA 61.324 55.000 0.00 0.00 0.00 2.59
46 47 2.178876 TTGCGATGTGACCACGGGAT 62.179 55.000 0.00 0.00 0.00 3.85
47 48 2.873525 TTGCGATGTGACCACGGGA 61.874 57.895 0.00 0.00 0.00 5.14
48 49 2.358125 TTGCGATGTGACCACGGG 60.358 61.111 0.00 0.00 0.00 5.28
49 50 1.667830 AGTTGCGATGTGACCACGG 60.668 57.895 0.00 0.00 0.00 4.94
50 51 0.943835 TCAGTTGCGATGTGACCACG 60.944 55.000 0.00 0.00 0.00 4.94
51 52 1.442769 ATCAGTTGCGATGTGACCAC 58.557 50.000 0.00 0.00 0.00 4.16
52 53 2.028567 TGTATCAGTTGCGATGTGACCA 60.029 45.455 0.00 0.00 0.00 4.02
53 54 2.616960 TGTATCAGTTGCGATGTGACC 58.383 47.619 0.00 0.00 0.00 4.02
54 55 4.641954 CTTTGTATCAGTTGCGATGTGAC 58.358 43.478 0.00 0.00 0.00 3.67
55 56 3.125146 GCTTTGTATCAGTTGCGATGTGA 59.875 43.478 0.00 0.00 0.00 3.58
56 57 3.419915 GCTTTGTATCAGTTGCGATGTG 58.580 45.455 0.00 0.00 0.00 3.21
57 58 2.420022 GGCTTTGTATCAGTTGCGATGT 59.580 45.455 0.00 0.00 0.00 3.06
58 59 2.419673 TGGCTTTGTATCAGTTGCGATG 59.580 45.455 0.00 0.00 0.00 3.84
59 60 2.420022 GTGGCTTTGTATCAGTTGCGAT 59.580 45.455 0.00 0.00 0.00 4.58
60 61 1.804151 GTGGCTTTGTATCAGTTGCGA 59.196 47.619 0.00 0.00 0.00 5.10
61 62 1.535028 TGTGGCTTTGTATCAGTTGCG 59.465 47.619 0.00 0.00 0.00 4.85
62 63 3.441572 AGATGTGGCTTTGTATCAGTTGC 59.558 43.478 0.00 0.00 0.00 4.17
63 64 4.696877 TCAGATGTGGCTTTGTATCAGTTG 59.303 41.667 0.00 0.00 0.00 3.16
64 65 4.697352 GTCAGATGTGGCTTTGTATCAGTT 59.303 41.667 0.00 0.00 0.00 3.16
65 66 4.256920 GTCAGATGTGGCTTTGTATCAGT 58.743 43.478 0.00 0.00 0.00 3.41
66 67 3.624861 GGTCAGATGTGGCTTTGTATCAG 59.375 47.826 0.00 0.00 0.00 2.90
67 68 3.264193 AGGTCAGATGTGGCTTTGTATCA 59.736 43.478 0.00 0.00 0.00 2.15
68 69 3.878778 AGGTCAGATGTGGCTTTGTATC 58.121 45.455 0.00 0.00 0.00 2.24
69 70 4.384208 GGTAGGTCAGATGTGGCTTTGTAT 60.384 45.833 0.00 0.00 0.00 2.29
70 71 3.055385 GGTAGGTCAGATGTGGCTTTGTA 60.055 47.826 0.00 0.00 0.00 2.41
71 72 2.290323 GGTAGGTCAGATGTGGCTTTGT 60.290 50.000 0.00 0.00 0.00 2.83
72 73 2.359900 GGTAGGTCAGATGTGGCTTTG 58.640 52.381 0.00 0.00 0.00 2.77
73 74 1.282157 GGGTAGGTCAGATGTGGCTTT 59.718 52.381 0.00 0.00 0.00 3.51
74 75 0.912486 GGGTAGGTCAGATGTGGCTT 59.088 55.000 0.00 0.00 0.00 4.35
75 76 0.043334 AGGGTAGGTCAGATGTGGCT 59.957 55.000 0.00 0.00 0.00 4.75
76 77 0.466124 GAGGGTAGGTCAGATGTGGC 59.534 60.000 0.00 0.00 0.00 5.01
77 78 2.166907 AGAGGGTAGGTCAGATGTGG 57.833 55.000 0.00 0.00 0.00 4.17
78 79 4.171878 TCTAGAGGGTAGGTCAGATGTG 57.828 50.000 0.00 0.00 0.00 3.21
79 80 4.417183 TCATCTAGAGGGTAGGTCAGATGT 59.583 45.833 4.28 0.00 40.05 3.06
80 81 4.991776 TCATCTAGAGGGTAGGTCAGATG 58.008 47.826 4.28 0.00 40.34 2.90
81 82 5.135362 ACTTCATCTAGAGGGTAGGTCAGAT 59.865 44.000 4.28 0.00 0.00 2.90
82 83 4.479056 ACTTCATCTAGAGGGTAGGTCAGA 59.521 45.833 4.28 0.00 0.00 3.27
83 84 4.798882 ACTTCATCTAGAGGGTAGGTCAG 58.201 47.826 4.28 0.00 0.00 3.51
84 85 4.883021 ACTTCATCTAGAGGGTAGGTCA 57.117 45.455 4.28 0.00 0.00 4.02
85 86 6.887626 CTAACTTCATCTAGAGGGTAGGTC 57.112 45.833 4.28 0.00 39.33 3.85
88 89 6.366340 TGTCCTAACTTCATCTAGAGGGTAG 58.634 44.000 4.28 5.36 41.85 3.18
89 90 6.337185 TGTCCTAACTTCATCTAGAGGGTA 57.663 41.667 4.28 0.00 0.00 3.69
90 91 5.208294 TGTCCTAACTTCATCTAGAGGGT 57.792 43.478 4.28 0.00 0.00 4.34
91 92 5.600484 ACATGTCCTAACTTCATCTAGAGGG 59.400 44.000 4.28 0.00 0.00 4.30
92 93 6.723298 ACATGTCCTAACTTCATCTAGAGG 57.277 41.667 0.00 0.00 0.00 3.69
93 94 8.474025 AGAAACATGTCCTAACTTCATCTAGAG 58.526 37.037 0.00 0.00 0.00 2.43
94 95 8.367660 AGAAACATGTCCTAACTTCATCTAGA 57.632 34.615 0.00 0.00 0.00 2.43
95 96 9.522804 GTAGAAACATGTCCTAACTTCATCTAG 57.477 37.037 0.00 0.00 0.00 2.43
96 97 9.256228 AGTAGAAACATGTCCTAACTTCATCTA 57.744 33.333 0.00 0.00 0.00 1.98
97 98 8.140112 AGTAGAAACATGTCCTAACTTCATCT 57.860 34.615 0.00 0.00 0.00 2.90
99 100 9.823647 CATAGTAGAAACATGTCCTAACTTCAT 57.176 33.333 0.00 0.00 0.00 2.57
100 101 8.258007 CCATAGTAGAAACATGTCCTAACTTCA 58.742 37.037 0.00 0.00 0.00 3.02
101 102 8.258708 ACCATAGTAGAAACATGTCCTAACTTC 58.741 37.037 0.00 0.00 0.00 3.01
102 103 8.041323 CACCATAGTAGAAACATGTCCTAACTT 58.959 37.037 0.00 0.00 0.00 2.66
103 104 7.180408 ACACCATAGTAGAAACATGTCCTAACT 59.820 37.037 0.00 4.04 0.00 2.24
104 105 7.328737 ACACCATAGTAGAAACATGTCCTAAC 58.671 38.462 0.00 0.00 0.00 2.34
105 106 7.490657 ACACCATAGTAGAAACATGTCCTAA 57.509 36.000 0.00 0.00 0.00 2.69
106 107 6.183360 CGACACCATAGTAGAAACATGTCCTA 60.183 42.308 0.00 1.07 33.28 2.94
107 108 5.394224 CGACACCATAGTAGAAACATGTCCT 60.394 44.000 0.00 2.14 33.28 3.85
108 109 4.804139 CGACACCATAGTAGAAACATGTCC 59.196 45.833 0.00 0.00 33.28 4.02
109 110 5.647589 TCGACACCATAGTAGAAACATGTC 58.352 41.667 0.00 0.00 33.48 3.06
110 111 5.654603 TCGACACCATAGTAGAAACATGT 57.345 39.130 0.00 0.00 0.00 3.21
111 112 7.704899 TGTTATCGACACCATAGTAGAAACATG 59.295 37.037 0.00 0.00 32.00 3.21
112 113 7.778083 TGTTATCGACACCATAGTAGAAACAT 58.222 34.615 0.00 0.00 32.00 2.71
113 114 7.160547 TGTTATCGACACCATAGTAGAAACA 57.839 36.000 0.00 0.00 32.00 2.83
127 128 3.513912 AGTCAGGATTGGTGTTATCGACA 59.486 43.478 0.00 0.00 35.42 4.35
128 129 4.124851 AGTCAGGATTGGTGTTATCGAC 57.875 45.455 0.00 0.00 0.00 4.20
129 130 7.431249 GTTATAGTCAGGATTGGTGTTATCGA 58.569 38.462 0.00 0.00 0.00 3.59
130 131 6.645415 GGTTATAGTCAGGATTGGTGTTATCG 59.355 42.308 0.00 0.00 0.00 2.92
131 132 6.935208 GGGTTATAGTCAGGATTGGTGTTATC 59.065 42.308 0.00 0.00 0.00 1.75
132 133 6.619852 AGGGTTATAGTCAGGATTGGTGTTAT 59.380 38.462 0.00 0.00 0.00 1.89
133 134 5.968167 AGGGTTATAGTCAGGATTGGTGTTA 59.032 40.000 0.00 0.00 0.00 2.41
134 135 4.788617 AGGGTTATAGTCAGGATTGGTGTT 59.211 41.667 0.00 0.00 0.00 3.32
135 136 4.371681 AGGGTTATAGTCAGGATTGGTGT 58.628 43.478 0.00 0.00 0.00 4.16
136 137 4.408921 TGAGGGTTATAGTCAGGATTGGTG 59.591 45.833 0.00 0.00 0.00 4.17
137 138 4.631234 TGAGGGTTATAGTCAGGATTGGT 58.369 43.478 0.00 0.00 0.00 3.67
138 139 5.832539 ATGAGGGTTATAGTCAGGATTGG 57.167 43.478 0.00 0.00 0.00 3.16
139 140 7.775093 TCAAAATGAGGGTTATAGTCAGGATTG 59.225 37.037 0.00 0.00 0.00 2.67
140 141 7.872138 TCAAAATGAGGGTTATAGTCAGGATT 58.128 34.615 0.00 0.00 0.00 3.01
141 142 7.451731 TCAAAATGAGGGTTATAGTCAGGAT 57.548 36.000 0.00 0.00 0.00 3.24
142 143 6.884472 TCAAAATGAGGGTTATAGTCAGGA 57.116 37.500 0.00 0.00 0.00 3.86
143 144 6.318900 GGTTCAAAATGAGGGTTATAGTCAGG 59.681 42.308 0.00 0.00 0.00 3.86
144 145 6.318900 GGGTTCAAAATGAGGGTTATAGTCAG 59.681 42.308 0.00 0.00 0.00 3.51
145 146 6.011981 AGGGTTCAAAATGAGGGTTATAGTCA 60.012 38.462 0.00 0.00 0.00 3.41
146 147 6.424032 AGGGTTCAAAATGAGGGTTATAGTC 58.576 40.000 0.00 0.00 0.00 2.59
147 148 6.402981 AGGGTTCAAAATGAGGGTTATAGT 57.597 37.500 0.00 0.00 0.00 2.12
148 149 8.817092 TTAAGGGTTCAAAATGAGGGTTATAG 57.183 34.615 0.00 0.00 0.00 1.31
149 150 9.777008 AATTAAGGGTTCAAAATGAGGGTTATA 57.223 29.630 0.00 0.00 0.00 0.98
150 151 8.539544 CAATTAAGGGTTCAAAATGAGGGTTAT 58.460 33.333 0.00 0.00 0.00 1.89
151 152 7.511028 ACAATTAAGGGTTCAAAATGAGGGTTA 59.489 33.333 0.00 0.00 0.00 2.85
152 153 6.328934 ACAATTAAGGGTTCAAAATGAGGGTT 59.671 34.615 0.00 0.00 0.00 4.11
153 154 5.843969 ACAATTAAGGGTTCAAAATGAGGGT 59.156 36.000 0.00 0.00 0.00 4.34
154 155 6.358974 ACAATTAAGGGTTCAAAATGAGGG 57.641 37.500 0.00 0.00 0.00 4.30
155 156 8.585018 AGTTACAATTAAGGGTTCAAAATGAGG 58.415 33.333 0.00 0.00 0.00 3.86
156 157 9.410556 CAGTTACAATTAAGGGTTCAAAATGAG 57.589 33.333 0.00 0.00 0.00 2.90
157 158 8.919145 ACAGTTACAATTAAGGGTTCAAAATGA 58.081 29.630 0.00 0.00 0.00 2.57
158 159 8.977505 CACAGTTACAATTAAGGGTTCAAAATG 58.022 33.333 0.00 0.00 0.00 2.32
159 160 8.147704 CCACAGTTACAATTAAGGGTTCAAAAT 58.852 33.333 0.00 0.00 0.00 1.82
160 161 7.493367 CCACAGTTACAATTAAGGGTTCAAAA 58.507 34.615 0.00 0.00 0.00 2.44
161 162 6.461788 GCCACAGTTACAATTAAGGGTTCAAA 60.462 38.462 0.00 0.00 0.00 2.69
162 163 5.010213 GCCACAGTTACAATTAAGGGTTCAA 59.990 40.000 0.00 0.00 0.00 2.69
163 164 4.521256 GCCACAGTTACAATTAAGGGTTCA 59.479 41.667 0.00 0.00 0.00 3.18
164 165 4.765339 AGCCACAGTTACAATTAAGGGTTC 59.235 41.667 0.00 0.00 0.00 3.62
165 166 4.522789 CAGCCACAGTTACAATTAAGGGTT 59.477 41.667 0.00 0.00 0.00 4.11
166 167 4.079253 CAGCCACAGTTACAATTAAGGGT 58.921 43.478 0.00 0.00 0.00 4.34
167 168 3.443681 CCAGCCACAGTTACAATTAAGGG 59.556 47.826 0.00 0.00 0.00 3.95
168 169 4.331968 TCCAGCCACAGTTACAATTAAGG 58.668 43.478 0.00 0.00 0.00 2.69
174 175 1.202758 CCACTCCAGCCACAGTTACAA 60.203 52.381 0.00 0.00 0.00 2.41
181 182 4.314440 GTCGCCACTCCAGCCACA 62.314 66.667 0.00 0.00 0.00 4.17
182 183 3.612247 ATGTCGCCACTCCAGCCAC 62.612 63.158 0.00 0.00 0.00 5.01
204 205 4.735985 TGCAGCAATGCTACAACTAAATG 58.264 39.130 7.70 0.00 36.40 2.32
213 214 4.792528 TTTTTGTTTGCAGCAATGCTAC 57.207 36.364 7.70 2.05 36.40 3.58
249 250 7.274468 GTGGCTCATGTCGATTATGTTCTATAG 59.726 40.741 11.02 0.00 0.00 1.31
259 260 1.199615 TGGGTGGCTCATGTCGATTA 58.800 50.000 0.00 0.00 0.00 1.75
271 272 1.967779 ACTTTTATGTGGTTGGGTGGC 59.032 47.619 0.00 0.00 0.00 5.01
280 281 5.556915 TGGTCCTCTTGTACTTTTATGTGG 58.443 41.667 0.00 0.00 0.00 4.17
281 282 7.687941 AATGGTCCTCTTGTACTTTTATGTG 57.312 36.000 0.00 0.00 0.00 3.21
288 289 9.588096 AGAAATAAAAATGGTCCTCTTGTACTT 57.412 29.630 0.00 0.00 0.00 2.24
289 290 9.014297 CAGAAATAAAAATGGTCCTCTTGTACT 57.986 33.333 0.00 0.00 0.00 2.73
290 291 9.010029 TCAGAAATAAAAATGGTCCTCTTGTAC 57.990 33.333 0.00 0.00 0.00 2.90
337 341 2.424601 CAGGGTCCAATAACACATGCAG 59.575 50.000 0.00 0.00 0.00 4.41
342 346 5.496556 CACTTATCAGGGTCCAATAACACA 58.503 41.667 0.00 0.00 0.00 3.72
345 349 3.883489 GGCACTTATCAGGGTCCAATAAC 59.117 47.826 0.00 0.00 0.00 1.89
411 419 3.536158 TTCGCACATCACTAAACTTGC 57.464 42.857 0.00 0.00 0.00 4.01
428 436 5.164061 GCTTGACAACTAAAATTGCCATTCG 60.164 40.000 0.00 0.00 32.47 3.34
538 549 3.131755 GGCTTGAAGAAATCCCATCTTGG 59.868 47.826 0.00 0.00 37.26 3.61
541 552 3.245371 TGTGGCTTGAAGAAATCCCATCT 60.245 43.478 0.00 0.00 0.00 2.90
551 562 0.176910 TGACACGTGTGGCTTGAAGA 59.823 50.000 28.82 0.00 39.96 2.87
629 642 7.062957 AGGGAAATTCCGATCTATTCATTTGT 58.937 34.615 5.87 0.00 37.43 2.83
630 643 7.516198 AGGGAAATTCCGATCTATTCATTTG 57.484 36.000 5.87 0.00 37.43 2.32
772 797 3.579151 GTGGTGGACTAGTTCTCCTCTTT 59.421 47.826 20.48 0.00 0.00 2.52
781 806 0.466543 TTGTGCGTGGTGGACTAGTT 59.533 50.000 0.00 0.00 40.08 2.24
782 807 0.466543 TTTGTGCGTGGTGGACTAGT 59.533 50.000 0.00 0.00 40.08 2.57
783 808 1.531149 CTTTTGTGCGTGGTGGACTAG 59.469 52.381 0.00 0.00 40.08 2.57
784 809 1.134340 ACTTTTGTGCGTGGTGGACTA 60.134 47.619 0.00 0.00 40.08 2.59
785 810 0.393808 ACTTTTGTGCGTGGTGGACT 60.394 50.000 0.00 0.00 40.08 3.85
786 811 1.003223 GTACTTTTGTGCGTGGTGGAC 60.003 52.381 0.00 0.00 39.78 4.02
787 812 1.301423 GTACTTTTGTGCGTGGTGGA 58.699 50.000 0.00 0.00 0.00 4.02
788 813 1.018148 TGTACTTTTGTGCGTGGTGG 58.982 50.000 0.00 0.00 37.88 4.61
823 848 5.744819 GCGTTACAATGTACTTTTGTGGTTT 59.255 36.000 18.93 1.69 37.81 3.27
824 849 5.275494 GCGTTACAATGTACTTTTGTGGTT 58.725 37.500 18.93 1.96 37.81 3.67
826 851 4.223659 GGCGTTACAATGTACTTTTGTGG 58.776 43.478 18.93 11.90 37.81 4.17
865 891 1.448013 GCACGGGTAGAGGAACAGC 60.448 63.158 0.00 0.00 0.00 4.40
1062 1233 1.006281 TGCTGGGCATCTTCTTTGGAT 59.994 47.619 0.00 0.00 31.71 3.41
1063 1234 0.405198 TGCTGGGCATCTTCTTTGGA 59.595 50.000 0.00 0.00 31.71 3.53
1568 1781 2.333225 CCGCGAGATCCTCCTTCG 59.667 66.667 8.23 0.00 0.00 3.79
1673 1886 1.003355 CCCACCTTGCAGATCACGT 60.003 57.895 0.00 0.00 0.00 4.49
1698 1912 1.807142 GAACTTTTCTTGGAGAGGCCG 59.193 52.381 0.00 0.00 40.66 6.13
1715 1929 4.783764 ATTCCCACCAAAAGAATCGAAC 57.216 40.909 0.00 0.00 0.00 3.95
1855 2069 7.592938 TGATCAGCGTTACAAATTTGAAGAAT 58.407 30.769 24.64 4.36 0.00 2.40
1960 2177 4.481930 TGAACAAAACCAGCATCTAACG 57.518 40.909 0.00 0.00 0.00 3.18
2019 2236 9.903682 CTCAAAATTCACTGACAAATGTCTAAT 57.096 29.630 14.15 6.64 44.99 1.73
2035 2308 9.995003 AGGTTACATTAAATTGCTCAAAATTCA 57.005 25.926 0.00 0.00 0.00 2.57
2050 2323 5.307204 ACACTAAACGGCAGGTTACATTAA 58.693 37.500 0.00 0.00 38.08 1.40
2060 2333 3.325870 TGATTCAGACACTAAACGGCAG 58.674 45.455 0.00 0.00 0.00 4.85
2084 2368 0.539051 GTATGGACAGCCTCAGCACT 59.461 55.000 0.00 0.00 43.56 4.40
2104 2388 5.187186 ACCAACATATACCGAACAGAACTCT 59.813 40.000 0.00 0.00 0.00 3.24
2106 2390 5.416271 ACCAACATATACCGAACAGAACT 57.584 39.130 0.00 0.00 0.00 3.01
2198 2482 8.773645 CGATGTATAACCAAGCAAATCATTCTA 58.226 33.333 0.00 0.00 0.00 2.10
2220 2504 4.681025 GCAATGTATAACCAAATGGCGATG 59.319 41.667 0.00 0.00 39.32 3.84
2224 2508 4.399004 TGGCAATGTATAACCAAATGGC 57.601 40.909 0.00 0.00 39.32 4.40
2225 2509 7.046652 TGAAATGGCAATGTATAACCAAATGG 58.953 34.615 0.00 0.00 42.17 3.16
2226 2510 8.665643 ATGAAATGGCAATGTATAACCAAATG 57.334 30.769 0.00 0.00 35.41 2.32
2227 2511 7.652909 CGATGAAATGGCAATGTATAACCAAAT 59.347 33.333 0.00 0.00 35.41 2.32
2228 2512 6.977502 CGATGAAATGGCAATGTATAACCAAA 59.022 34.615 0.00 0.00 35.41 3.28
2229 2513 6.319911 TCGATGAAATGGCAATGTATAACCAA 59.680 34.615 0.00 0.00 35.41 3.67
2230 2514 5.825151 TCGATGAAATGGCAATGTATAACCA 59.175 36.000 0.00 0.00 36.43 3.67
2231 2515 6.142817 GTCGATGAAATGGCAATGTATAACC 58.857 40.000 0.00 0.00 0.00 2.85
2232 2516 6.632834 GTGTCGATGAAATGGCAATGTATAAC 59.367 38.462 0.00 0.00 0.00 1.89
2233 2517 6.542005 AGTGTCGATGAAATGGCAATGTATAA 59.458 34.615 0.00 0.00 0.00 0.98
2234 2518 6.018016 CAGTGTCGATGAAATGGCAATGTATA 60.018 38.462 0.00 0.00 0.00 1.47
2235 2519 4.883585 AGTGTCGATGAAATGGCAATGTAT 59.116 37.500 0.00 0.00 0.00 2.29
2236 2520 4.094739 CAGTGTCGATGAAATGGCAATGTA 59.905 41.667 0.00 0.00 0.00 2.29
2237 2521 3.084039 AGTGTCGATGAAATGGCAATGT 58.916 40.909 0.00 0.00 0.00 2.71
2238 2522 3.431856 CAGTGTCGATGAAATGGCAATG 58.568 45.455 0.00 0.00 0.00 2.82
2239 2523 2.159338 GCAGTGTCGATGAAATGGCAAT 60.159 45.455 0.00 0.00 0.00 3.56
2240 2524 1.199789 GCAGTGTCGATGAAATGGCAA 59.800 47.619 0.00 0.00 0.00 4.52
2241 2525 0.804364 GCAGTGTCGATGAAATGGCA 59.196 50.000 0.00 0.00 0.00 4.92
2277 2561 2.531522 GCAAACAAGGCCAACAAGAT 57.468 45.000 5.01 0.00 0.00 2.40
2301 3362 7.806409 AAATTTGCAAAAGTAGCCAAAGATT 57.194 28.000 17.19 0.00 0.00 2.40
2388 5100 2.883888 GCTGCCCCCAAGAATACAGAAA 60.884 50.000 0.00 0.00 0.00 2.52
2389 5101 1.340991 GCTGCCCCCAAGAATACAGAA 60.341 52.381 0.00 0.00 0.00 3.02
2390 5102 0.255890 GCTGCCCCCAAGAATACAGA 59.744 55.000 0.00 0.00 0.00 3.41
2391 5103 0.257039 AGCTGCCCCCAAGAATACAG 59.743 55.000 0.00 0.00 0.00 2.74
2392 5104 0.704076 AAGCTGCCCCCAAGAATACA 59.296 50.000 0.00 0.00 0.00 2.29
2393 5105 1.106285 CAAGCTGCCCCCAAGAATAC 58.894 55.000 0.00 0.00 0.00 1.89
2394 5106 0.704076 ACAAGCTGCCCCCAAGAATA 59.296 50.000 0.00 0.00 0.00 1.75
2395 5107 0.704076 TACAAGCTGCCCCCAAGAAT 59.296 50.000 0.00 0.00 0.00 2.40
2396 5108 0.480690 TTACAAGCTGCCCCCAAGAA 59.519 50.000 0.00 0.00 0.00 2.52
2397 5109 0.038166 CTTACAAGCTGCCCCCAAGA 59.962 55.000 0.00 0.00 0.00 3.02
2398 5110 0.967380 CCTTACAAGCTGCCCCCAAG 60.967 60.000 0.00 0.00 0.00 3.61
2399 5111 1.076549 CCTTACAAGCTGCCCCCAA 59.923 57.895 0.00 0.00 0.00 4.12
2400 5112 1.725169 AACCTTACAAGCTGCCCCCA 61.725 55.000 0.00 0.00 0.00 4.96
2401 5113 0.965866 GAACCTTACAAGCTGCCCCC 60.966 60.000 0.00 0.00 0.00 5.40
2402 5114 0.251165 TGAACCTTACAAGCTGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
2501 5230 7.651304 GTGAGTGACAAGTAATATGGATCAGAG 59.349 40.741 0.00 0.00 0.00 3.35
2502 5231 7.343057 AGTGAGTGACAAGTAATATGGATCAGA 59.657 37.037 0.00 0.00 0.00 3.27
2504 5233 7.423844 AGTGAGTGACAAGTAATATGGATCA 57.576 36.000 0.00 0.00 0.00 2.92
2505 5234 9.817809 TTAAGTGAGTGACAAGTAATATGGATC 57.182 33.333 0.00 0.00 0.00 3.36
2542 5271 9.765795 GCAGAACTGGTACTACTCAATTAATAT 57.234 33.333 3.99 0.00 0.00 1.28
2543 5272 7.919091 CGCAGAACTGGTACTACTCAATTAATA 59.081 37.037 3.99 0.00 0.00 0.98
2544 5273 6.757010 CGCAGAACTGGTACTACTCAATTAAT 59.243 38.462 3.99 0.00 0.00 1.40
2545 5274 6.097356 CGCAGAACTGGTACTACTCAATTAA 58.903 40.000 3.99 0.00 0.00 1.40
2546 5275 5.184479 ACGCAGAACTGGTACTACTCAATTA 59.816 40.000 3.99 0.00 0.00 1.40
2547 5276 4.021368 ACGCAGAACTGGTACTACTCAATT 60.021 41.667 3.99 0.00 0.00 2.32
2548 5277 3.510360 ACGCAGAACTGGTACTACTCAAT 59.490 43.478 3.99 0.00 0.00 2.57
2549 5278 2.889045 ACGCAGAACTGGTACTACTCAA 59.111 45.455 3.99 0.00 0.00 3.02
2550 5279 2.511659 ACGCAGAACTGGTACTACTCA 58.488 47.619 3.99 0.00 0.00 3.41
2551 5280 3.572604 AACGCAGAACTGGTACTACTC 57.427 47.619 3.99 0.00 0.00 2.59
2552 5281 3.573110 AGAAACGCAGAACTGGTACTACT 59.427 43.478 3.99 0.00 0.00 2.57
2553 5282 3.673809 CAGAAACGCAGAACTGGTACTAC 59.326 47.826 3.99 0.00 0.00 2.73
2554 5283 3.570975 TCAGAAACGCAGAACTGGTACTA 59.429 43.478 3.99 0.00 0.00 1.82
2555 5284 2.364324 TCAGAAACGCAGAACTGGTACT 59.636 45.455 3.99 2.26 0.00 2.73
2556 5285 2.750948 TCAGAAACGCAGAACTGGTAC 58.249 47.619 3.99 0.00 0.00 3.34
2557 5286 3.128349 GTTCAGAAACGCAGAACTGGTA 58.872 45.455 3.99 0.00 39.23 3.25
2558 5287 1.940613 GTTCAGAAACGCAGAACTGGT 59.059 47.619 3.99 0.00 39.23 4.00
2559 5288 2.670401 GTTCAGAAACGCAGAACTGG 57.330 50.000 3.99 0.00 39.23 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.