Multiple sequence alignment - TraesCS5D01G383100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G383100 chr5D 100.000 5799 0 0 1 5799 452674966 452680764 0.000000e+00 10709.0
1 TraesCS5D01G383100 chr5D 91.429 175 15 0 3255 3429 129872952 129872778 2.090000e-59 241.0
2 TraesCS5D01G383100 chr5A 95.020 1767 59 11 3416 5180 571682156 571683895 0.000000e+00 2748.0
3 TraesCS5D01G383100 chr5A 92.609 1353 72 18 703 2049 571679668 571680998 0.000000e+00 1919.0
4 TraesCS5D01G383100 chr5A 94.269 1169 45 5 2067 3218 571680979 571682142 0.000000e+00 1768.0
5 TraesCS5D01G383100 chr5A 86.364 572 55 16 9 571 571679115 571679672 2.310000e-168 603.0
6 TraesCS5D01G383100 chr5A 76.771 960 181 32 3495 4437 26133543 26134477 3.120000e-137 499.0
7 TraesCS5D01G383100 chr5A 84.800 500 25 11 5313 5799 571683910 571684371 6.850000e-124 455.0
8 TraesCS5D01G383100 chr5B 94.367 1793 79 9 3416 5191 553179908 553181695 0.000000e+00 2732.0
9 TraesCS5D01G383100 chr5B 93.264 1544 78 15 780 2308 553177246 553178778 0.000000e+00 2252.0
10 TraesCS5D01G383100 chr5B 91.437 981 39 11 2290 3257 553178961 553179909 0.000000e+00 1304.0
11 TraesCS5D01G383100 chr5B 92.899 169 12 0 3249 3417 612672816 612672984 4.490000e-61 246.0
12 TraesCS5D01G383100 chr5B 88.571 175 10 1 5626 5790 553184517 553184691 2.740000e-48 204.0
13 TraesCS5D01G383100 chr5B 78.922 204 31 9 5299 5496 553181832 553182029 1.700000e-25 128.0
14 TraesCS5D01G383100 chr1D 89.356 357 27 7 4908 5254 326584175 326583820 6.900000e-119 438.0
15 TraesCS5D01G383100 chr1D 90.761 184 15 2 3236 3418 118824291 118824109 1.610000e-60 244.0
16 TraesCS5D01G383100 chr1D 95.588 136 6 0 569 704 141340007 141340142 9.780000e-53 219.0
17 TraesCS5D01G383100 chr1D 77.654 179 37 3 353 530 228836678 228836854 7.950000e-19 106.0
18 TraesCS5D01G383100 chr1D 90.476 63 5 1 5316 5377 141705981 141706043 1.340000e-11 82.4
19 TraesCS5D01G383100 chr1D 97.059 34 1 0 5284 5317 407673086 407673119 2.260000e-04 58.4
20 TraesCS5D01G383100 chr1A 88.796 357 30 6 4908 5254 412226297 412226653 4.150000e-116 429.0
21 TraesCS5D01G383100 chr1A 95.062 162 8 0 3256 3417 181769427 181769588 7.460000e-64 255.0
22 TraesCS5D01G383100 chr7D 94.643 168 9 0 3254 3421 500775620 500775453 1.600000e-65 261.0
23 TraesCS5D01G383100 chr7D 91.304 46 3 1 57 102 28538460 28538504 1.740000e-05 62.1
24 TraesCS5D01G383100 chr7D 96.970 33 1 0 5284 5316 635399072 635399040 8.120000e-04 56.5
25 TraesCS5D01G383100 chr2D 93.373 166 11 0 3256 3421 387193856 387193691 4.490000e-61 246.0
26 TraesCS5D01G383100 chr2D 96.970 33 1 0 5284 5316 192181511 192181479 8.120000e-04 56.5
27 TraesCS5D01G383100 chr3A 93.827 162 10 0 3256 3417 585298142 585297981 1.610000e-60 244.0
28 TraesCS5D01G383100 chr3A 84.722 72 11 0 62 133 566317700 566317629 8.060000e-09 73.1
29 TraesCS5D01G383100 chrUn 91.908 173 13 1 3253 3424 311695271 311695443 2.090000e-59 241.0
30 TraesCS5D01G383100 chrUn 96.324 136 5 0 569 704 67964691 67964556 2.100000e-54 224.0
31 TraesCS5D01G383100 chrUn 96.324 136 5 0 569 704 403428593 403428728 2.100000e-54 224.0
32 TraesCS5D01G383100 chrUn 88.000 75 8 1 5304 5377 425570676 425570750 2.880000e-13 87.9
33 TraesCS5D01G383100 chr4D 90.608 181 16 1 3238 3418 64390649 64390470 7.510000e-59 239.0
34 TraesCS5D01G383100 chr4D 96.324 136 4 1 569 704 135031428 135031562 7.560000e-54 222.0
35 TraesCS5D01G383100 chr1B 90.698 172 14 1 5580 5749 440500608 440500437 1.630000e-55 228.0
36 TraesCS5D01G383100 chr1B 96.324 136 5 0 569 704 683707223 683707358 2.100000e-54 224.0
37 TraesCS5D01G383100 chr1B 95.588 136 6 0 569 704 338918700 338918565 9.780000e-53 219.0
38 TraesCS5D01G383100 chr1B 90.476 63 5 1 5316 5377 195591205 195591267 1.340000e-11 82.4
39 TraesCS5D01G383100 chr7B 96.324 136 5 0 569 704 698166409 698166274 2.100000e-54 224.0
40 TraesCS5D01G383100 chr7B 96.324 136 5 0 569 704 743123072 743123207 2.100000e-54 224.0
41 TraesCS5D01G383100 chr6D 95.588 136 6 0 569 704 108474536 108474401 9.780000e-53 219.0
42 TraesCS5D01G383100 chr6D 90.769 65 5 1 5314 5377 230778600 230778664 1.040000e-12 86.1
43 TraesCS5D01G383100 chr6D 89.231 65 6 1 5314 5377 58245456 58245392 4.820000e-11 80.5
44 TraesCS5D01G383100 chr6D 75.410 183 36 8 321 497 350569064 350568885 4.820000e-11 80.5
45 TraesCS5D01G383100 chr6D 97.059 34 1 0 5284 5317 22075295 22075328 2.260000e-04 58.4
46 TraesCS5D01G383100 chr3D 92.308 65 4 1 5314 5377 365526115 365526051 2.230000e-14 91.6
47 TraesCS5D01G383100 chr3D 85.185 54 7 1 5262 5315 502949433 502949381 3.000000e-03 54.7
48 TraesCS5D01G383100 chr6A 90.323 62 5 1 5317 5377 73562070 73562009 4.820000e-11 80.5
49 TraesCS5D01G383100 chr6A 77.500 120 25 2 341 459 602685293 602685175 2.900000e-08 71.3
50 TraesCS5D01G383100 chr6A 74.713 174 35 8 291 460 24764583 24764751 1.040000e-07 69.4
51 TraesCS5D01G383100 chr4B 89.231 65 6 1 5314 5377 270831674 270831738 4.820000e-11 80.5
52 TraesCS5D01G383100 chr4B 100.000 31 0 0 5288 5318 670441147 670441117 2.260000e-04 58.4
53 TraesCS5D01G383100 chr2A 75.723 173 35 7 402 571 37319718 37319886 4.820000e-11 80.5
54 TraesCS5D01G383100 chr6B 72.340 235 53 12 335 564 529365656 529365883 4.850000e-06 63.9
55 TraesCS5D01G383100 chr7A 100.000 33 0 0 5284 5316 41045033 41045001 1.740000e-05 62.1
56 TraesCS5D01G383100 chr4A 100.000 32 0 0 5284 5315 362103108 362103139 6.280000e-05 60.2
57 TraesCS5D01G383100 chr3B 87.273 55 4 3 5262 5315 664021878 664021826 6.280000e-05 60.2
58 TraesCS5D01G383100 chr3B 87.037 54 6 1 407 460 764176630 764176682 6.280000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G383100 chr5D 452674966 452680764 5798 False 10709.0 10709 100.0000 1 5799 1 chr5D.!!$F1 5798
1 TraesCS5D01G383100 chr5A 571679115 571684371 5256 False 1498.6 2748 90.6124 9 5799 5 chr5A.!!$F2 5790
2 TraesCS5D01G383100 chr5A 26133543 26134477 934 False 499.0 499 76.7710 3495 4437 1 chr5A.!!$F1 942
3 TraesCS5D01G383100 chr5B 553177246 553184691 7445 False 1324.0 2732 89.3122 780 5790 5 chr5B.!!$F2 5010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 830 0.031994 CCAAGTTTTGAGTTGGGCCG 59.968 55.0 0.00 0.00 39.76 6.13 F
1706 1727 0.920664 GCAGTGCCGTTGTTCAAAAC 59.079 50.0 2.85 0.00 0.00 2.43 F
2850 3092 0.098376 AGCTCGTTATGGTCGTCGAC 59.902 55.0 17.16 17.16 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1747 0.178873 TTACTCCAAGGAGGCCCAGT 60.179 55.0 19.62 1.73 45.88 4.00 R
3395 3638 0.905357 CTCCCTCCGTTCCTCAATGT 59.095 55.0 0.00 0.00 0.00 2.71 R
4836 5080 0.542333 GAGAGTTACAGGGAAGGGGC 59.458 60.0 0.00 0.00 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 5.567138 ATTATGCTTCCGGAAAAGTGAAG 57.433 39.130 19.39 5.45 38.77 3.02
141 142 1.095600 GGAAAAGTGAAGGGCGGATC 58.904 55.000 0.00 0.00 0.00 3.36
174 175 4.460263 TGTGAAACATAGTTGTGCTTCCT 58.540 39.130 0.00 0.00 45.67 3.36
180 181 6.655078 AACATAGTTGTGCTTCCTGAAAAT 57.345 33.333 0.00 0.00 35.83 1.82
182 183 7.759489 ACATAGTTGTGCTTCCTGAAAATAA 57.241 32.000 0.00 0.00 33.85 1.40
183 184 8.177119 ACATAGTTGTGCTTCCTGAAAATAAA 57.823 30.769 0.00 0.00 33.85 1.40
216 217 0.397941 TGTGTGCTTCTCCCCAAGAG 59.602 55.000 0.00 0.00 44.75 2.85
242 243 1.913778 AACACGGTTGTAATTCCCCC 58.086 50.000 0.00 0.00 33.55 5.40
254 255 6.168270 TGTAATTCCCCCAAAAGTGAAAAG 57.832 37.500 0.00 0.00 0.00 2.27
405 415 3.093717 TCGAGGCGAGAAACATAATCC 57.906 47.619 0.00 0.00 0.00 3.01
424 434 8.620416 CATAATCCTGAAAACGGTTCATGATTA 58.380 33.333 25.73 25.73 43.40 1.75
425 435 5.873179 TCCTGAAAACGGTTCATGATTAC 57.127 39.130 0.00 0.00 0.00 1.89
430 440 3.322211 AACGGTTCATGATTACGGACA 57.678 42.857 15.51 0.00 0.00 4.02
450 460 6.094048 CGGACACATGGTTCAAGAGATAAAAT 59.906 38.462 0.00 0.00 0.00 1.82
480 490 4.992381 ACAACGAGTGTATGAAAGAAGC 57.008 40.909 0.00 0.00 39.29 3.86
487 497 6.017109 ACGAGTGTATGAAAGAAGCACAAAAT 60.017 34.615 0.00 0.00 32.99 1.82
490 500 7.945134 AGTGTATGAAAGAAGCACAAAATTCT 58.055 30.769 0.00 0.00 37.36 2.40
492 502 7.862372 GTGTATGAAAGAAGCACAAAATTCTCA 59.138 33.333 0.00 0.00 34.71 3.27
497 507 5.859205 AGAAGCACAAAATTCTCAGGTTT 57.141 34.783 0.00 0.00 29.80 3.27
503 513 5.577835 CACAAAATTCTCAGGTTTCGACAA 58.422 37.500 0.00 0.00 0.00 3.18
505 515 5.357032 ACAAAATTCTCAGGTTTCGACAAGT 59.643 36.000 0.00 0.00 0.00 3.16
506 516 6.540914 ACAAAATTCTCAGGTTTCGACAAGTA 59.459 34.615 0.00 0.00 0.00 2.24
520 530 4.081955 CGACAAGTATCGCACATGCAATG 61.082 47.826 4.49 0.00 42.37 2.82
544 554 2.287915 CCACTTGTCACCACGAGAAAAG 59.712 50.000 0.00 0.00 37.46 2.27
560 570 7.757173 CACGAGAAAAGATGAGAGTGATCTTTA 59.243 37.037 7.89 0.00 45.35 1.85
571 581 5.342866 AGAGTGATCTTTACAAGGGGTACT 58.657 41.667 0.00 0.00 0.00 2.73
572 582 5.187967 AGAGTGATCTTTACAAGGGGTACTG 59.812 44.000 0.00 0.00 0.00 2.74
573 583 4.225267 AGTGATCTTTACAAGGGGTACTGG 59.775 45.833 0.00 0.00 0.00 4.00
574 584 4.224370 GTGATCTTTACAAGGGGTACTGGA 59.776 45.833 0.00 0.00 0.00 3.86
575 585 5.036916 TGATCTTTACAAGGGGTACTGGAT 58.963 41.667 0.00 0.00 0.00 3.41
576 586 5.130477 TGATCTTTACAAGGGGTACTGGATC 59.870 44.000 0.00 0.00 34.97 3.36
577 587 4.431378 TCTTTACAAGGGGTACTGGATCA 58.569 43.478 0.00 0.00 0.00 2.92
578 588 4.847512 TCTTTACAAGGGGTACTGGATCAA 59.152 41.667 0.00 0.00 0.00 2.57
579 589 4.563140 TTACAAGGGGTACTGGATCAAC 57.437 45.455 0.00 0.00 0.00 3.18
580 590 2.344592 ACAAGGGGTACTGGATCAACA 58.655 47.619 0.00 0.00 0.00 3.33
581 591 2.919602 ACAAGGGGTACTGGATCAACAT 59.080 45.455 0.00 0.00 0.00 2.71
582 592 3.054361 ACAAGGGGTACTGGATCAACATC 60.054 47.826 0.00 0.00 0.00 3.06
593 603 3.252974 GATCAACATCCACCGTCTTCT 57.747 47.619 0.00 0.00 0.00 2.85
594 604 3.600388 GATCAACATCCACCGTCTTCTT 58.400 45.455 0.00 0.00 0.00 2.52
595 605 3.040147 TCAACATCCACCGTCTTCTTC 57.960 47.619 0.00 0.00 0.00 2.87
596 606 1.726791 CAACATCCACCGTCTTCTTCG 59.273 52.381 0.00 0.00 0.00 3.79
605 615 2.250348 CGTCTTCTTCGGACTCAGAC 57.750 55.000 0.00 0.00 0.00 3.51
606 616 1.535896 CGTCTTCTTCGGACTCAGACA 59.464 52.381 9.23 0.00 32.05 3.41
607 617 2.666069 CGTCTTCTTCGGACTCAGACAC 60.666 54.545 9.23 0.00 32.05 3.67
608 618 2.293677 GTCTTCTTCGGACTCAGACACA 59.706 50.000 5.26 0.00 32.53 3.72
609 619 2.956333 TCTTCTTCGGACTCAGACACAA 59.044 45.455 0.00 0.00 0.00 3.33
610 620 3.004839 TCTTCTTCGGACTCAGACACAAG 59.995 47.826 0.00 0.00 0.00 3.16
611 621 2.583143 TCTTCGGACTCAGACACAAGA 58.417 47.619 0.00 0.00 0.00 3.02
612 622 2.956333 TCTTCGGACTCAGACACAAGAA 59.044 45.455 0.00 0.00 0.00 2.52
613 623 2.795175 TCGGACTCAGACACAAGAAC 57.205 50.000 0.00 0.00 0.00 3.01
614 624 1.001706 TCGGACTCAGACACAAGAACG 60.002 52.381 0.00 0.00 0.00 3.95
615 625 1.001706 CGGACTCAGACACAAGAACGA 60.002 52.381 0.00 0.00 0.00 3.85
616 626 2.543031 CGGACTCAGACACAAGAACGAA 60.543 50.000 0.00 0.00 0.00 3.85
617 627 3.454375 GGACTCAGACACAAGAACGAAA 58.546 45.455 0.00 0.00 0.00 3.46
618 628 3.245519 GGACTCAGACACAAGAACGAAAC 59.754 47.826 0.00 0.00 0.00 2.78
619 629 3.195661 ACTCAGACACAAGAACGAAACC 58.804 45.455 0.00 0.00 0.00 3.27
620 630 2.198406 TCAGACACAAGAACGAAACCG 58.802 47.619 0.00 0.00 0.00 4.44
621 631 0.935196 AGACACAAGAACGAAACCGC 59.065 50.000 0.00 0.00 0.00 5.68
622 632 0.041576 GACACAAGAACGAAACCGCC 60.042 55.000 0.00 0.00 0.00 6.13
623 633 0.745128 ACACAAGAACGAAACCGCCA 60.745 50.000 0.00 0.00 0.00 5.69
624 634 0.378962 CACAAGAACGAAACCGCCAA 59.621 50.000 0.00 0.00 0.00 4.52
625 635 1.096416 ACAAGAACGAAACCGCCAAA 58.904 45.000 0.00 0.00 0.00 3.28
626 636 1.473278 ACAAGAACGAAACCGCCAAAA 59.527 42.857 0.00 0.00 0.00 2.44
627 637 2.094649 ACAAGAACGAAACCGCCAAAAA 60.095 40.909 0.00 0.00 0.00 1.94
628 638 2.197792 AGAACGAAACCGCCAAAAAC 57.802 45.000 0.00 0.00 0.00 2.43
629 639 1.473278 AGAACGAAACCGCCAAAAACA 59.527 42.857 0.00 0.00 0.00 2.83
630 640 2.100087 AGAACGAAACCGCCAAAAACAT 59.900 40.909 0.00 0.00 0.00 2.71
631 641 1.846541 ACGAAACCGCCAAAAACATG 58.153 45.000 0.00 0.00 0.00 3.21
632 642 1.405821 ACGAAACCGCCAAAAACATGA 59.594 42.857 0.00 0.00 0.00 3.07
633 643 2.159226 ACGAAACCGCCAAAAACATGAA 60.159 40.909 0.00 0.00 0.00 2.57
634 644 2.860735 CGAAACCGCCAAAAACATGAAA 59.139 40.909 0.00 0.00 0.00 2.69
635 645 3.302156 CGAAACCGCCAAAAACATGAAAC 60.302 43.478 0.00 0.00 0.00 2.78
636 646 2.969628 ACCGCCAAAAACATGAAACA 57.030 40.000 0.00 0.00 0.00 2.83
637 647 2.820330 ACCGCCAAAAACATGAAACAG 58.180 42.857 0.00 0.00 0.00 3.16
638 648 2.428890 ACCGCCAAAAACATGAAACAGA 59.571 40.909 0.00 0.00 0.00 3.41
639 649 3.118956 ACCGCCAAAAACATGAAACAGAA 60.119 39.130 0.00 0.00 0.00 3.02
640 650 3.245048 CCGCCAAAAACATGAAACAGAAC 59.755 43.478 0.00 0.00 0.00 3.01
641 651 3.862267 CGCCAAAAACATGAAACAGAACA 59.138 39.130 0.00 0.00 0.00 3.18
642 652 4.328440 CGCCAAAAACATGAAACAGAACAA 59.672 37.500 0.00 0.00 0.00 2.83
643 653 5.163913 CGCCAAAAACATGAAACAGAACAAA 60.164 36.000 0.00 0.00 0.00 2.83
644 654 6.250089 GCCAAAAACATGAAACAGAACAAAG 58.750 36.000 0.00 0.00 0.00 2.77
645 655 6.091986 GCCAAAAACATGAAACAGAACAAAGA 59.908 34.615 0.00 0.00 0.00 2.52
646 656 7.674705 GCCAAAAACATGAAACAGAACAAAGAG 60.675 37.037 0.00 0.00 0.00 2.85
647 657 7.201548 CCAAAAACATGAAACAGAACAAAGAGG 60.202 37.037 0.00 0.00 0.00 3.69
648 658 6.773976 AAACATGAAACAGAACAAAGAGGA 57.226 33.333 0.00 0.00 0.00 3.71
649 659 6.382869 AACATGAAACAGAACAAAGAGGAG 57.617 37.500 0.00 0.00 0.00 3.69
650 660 5.440610 ACATGAAACAGAACAAAGAGGAGT 58.559 37.500 0.00 0.00 0.00 3.85
651 661 6.591935 ACATGAAACAGAACAAAGAGGAGTA 58.408 36.000 0.00 0.00 0.00 2.59
652 662 6.708054 ACATGAAACAGAACAAAGAGGAGTAG 59.292 38.462 0.00 0.00 0.00 2.57
653 663 6.235231 TGAAACAGAACAAAGAGGAGTAGT 57.765 37.500 0.00 0.00 0.00 2.73
654 664 7.356089 TGAAACAGAACAAAGAGGAGTAGTA 57.644 36.000 0.00 0.00 0.00 1.82
655 665 7.208080 TGAAACAGAACAAAGAGGAGTAGTAC 58.792 38.462 0.00 0.00 0.00 2.73
656 666 5.373981 ACAGAACAAAGAGGAGTAGTACG 57.626 43.478 0.00 0.00 0.00 3.67
657 667 4.217983 ACAGAACAAAGAGGAGTAGTACGG 59.782 45.833 0.00 0.00 0.00 4.02
658 668 3.193056 AGAACAAAGAGGAGTAGTACGGC 59.807 47.826 0.00 0.00 0.00 5.68
659 669 2.522185 ACAAAGAGGAGTAGTACGGCA 58.478 47.619 0.00 0.00 0.00 5.69
660 670 2.895404 ACAAAGAGGAGTAGTACGGCAA 59.105 45.455 0.00 0.00 0.00 4.52
661 671 3.251571 CAAAGAGGAGTAGTACGGCAAC 58.748 50.000 0.00 0.00 0.00 4.17
662 672 2.510928 AGAGGAGTAGTACGGCAACT 57.489 50.000 0.00 0.00 0.00 3.16
663 673 2.093106 AGAGGAGTAGTACGGCAACTG 58.907 52.381 0.01 0.00 0.00 3.16
664 674 2.089980 GAGGAGTAGTACGGCAACTGA 58.910 52.381 0.01 0.00 0.00 3.41
665 675 2.490903 GAGGAGTAGTACGGCAACTGAA 59.509 50.000 0.01 0.00 0.00 3.02
666 676 3.097614 AGGAGTAGTACGGCAACTGAAT 58.902 45.455 0.01 0.00 0.00 2.57
667 677 3.130693 AGGAGTAGTACGGCAACTGAATC 59.869 47.826 0.01 0.00 0.00 2.52
668 678 3.119245 GGAGTAGTACGGCAACTGAATCA 60.119 47.826 0.01 0.00 0.00 2.57
669 679 4.441634 GGAGTAGTACGGCAACTGAATCAT 60.442 45.833 0.01 0.00 0.00 2.45
670 680 5.221185 GGAGTAGTACGGCAACTGAATCATA 60.221 44.000 0.01 0.00 0.00 2.15
671 681 5.833082 AGTAGTACGGCAACTGAATCATAG 58.167 41.667 0.01 0.00 0.00 2.23
672 682 4.737855 AGTACGGCAACTGAATCATAGT 57.262 40.909 0.00 0.00 0.00 2.12
673 683 4.683832 AGTACGGCAACTGAATCATAGTC 58.316 43.478 0.00 0.00 0.00 2.59
674 684 3.895232 ACGGCAACTGAATCATAGTCT 57.105 42.857 0.00 0.00 0.00 3.24
675 685 3.525537 ACGGCAACTGAATCATAGTCTG 58.474 45.455 0.00 0.00 0.00 3.51
676 686 3.195610 ACGGCAACTGAATCATAGTCTGA 59.804 43.478 0.00 0.00 38.53 3.27
677 687 3.553511 CGGCAACTGAATCATAGTCTGAC 59.446 47.826 0.00 0.00 36.48 3.51
678 688 4.507710 GGCAACTGAATCATAGTCTGACA 58.492 43.478 10.88 0.00 36.48 3.58
679 689 4.331168 GGCAACTGAATCATAGTCTGACAC 59.669 45.833 10.88 0.00 36.48 3.67
680 690 4.032217 GCAACTGAATCATAGTCTGACACG 59.968 45.833 10.88 0.00 36.48 4.49
681 691 5.164233 CAACTGAATCATAGTCTGACACGT 58.836 41.667 10.88 0.00 36.48 4.49
682 692 5.392767 ACTGAATCATAGTCTGACACGTT 57.607 39.130 10.88 0.00 36.48 3.99
683 693 5.403246 ACTGAATCATAGTCTGACACGTTC 58.597 41.667 10.88 7.35 36.48 3.95
684 694 4.412207 TGAATCATAGTCTGACACGTTCG 58.588 43.478 10.88 0.00 36.48 3.95
685 695 4.155280 TGAATCATAGTCTGACACGTTCGA 59.845 41.667 10.88 0.00 36.48 3.71
686 696 4.902443 ATCATAGTCTGACACGTTCGAT 57.098 40.909 10.88 0.69 36.48 3.59
687 697 4.016113 TCATAGTCTGACACGTTCGATG 57.984 45.455 10.88 2.48 0.00 3.84
688 698 2.913777 TAGTCTGACACGTTCGATGG 57.086 50.000 10.88 0.00 0.00 3.51
689 699 0.959553 AGTCTGACACGTTCGATGGT 59.040 50.000 10.88 0.00 0.00 3.55
690 700 1.340248 AGTCTGACACGTTCGATGGTT 59.660 47.619 10.88 0.00 0.00 3.67
691 701 1.455786 GTCTGACACGTTCGATGGTTG 59.544 52.381 2.24 0.00 0.00 3.77
692 702 0.790207 CTGACACGTTCGATGGTTGG 59.210 55.000 0.00 0.00 0.00 3.77
693 703 1.225376 TGACACGTTCGATGGTTGGC 61.225 55.000 0.00 0.00 0.00 4.52
694 704 0.949105 GACACGTTCGATGGTTGGCT 60.949 55.000 0.00 0.00 0.00 4.75
695 705 0.534203 ACACGTTCGATGGTTGGCTT 60.534 50.000 0.00 0.00 0.00 4.35
696 706 0.591170 CACGTTCGATGGTTGGCTTT 59.409 50.000 0.00 0.00 0.00 3.51
697 707 0.872388 ACGTTCGATGGTTGGCTTTC 59.128 50.000 0.00 0.00 0.00 2.62
698 708 0.168128 CGTTCGATGGTTGGCTTTCC 59.832 55.000 0.00 0.00 0.00 3.13
699 709 1.534729 GTTCGATGGTTGGCTTTCCT 58.465 50.000 0.00 0.00 0.00 3.36
700 710 1.200020 GTTCGATGGTTGGCTTTCCTG 59.800 52.381 0.00 0.00 0.00 3.86
701 711 0.690192 TCGATGGTTGGCTTTCCTGA 59.310 50.000 0.00 0.00 0.00 3.86
702 712 1.089920 CGATGGTTGGCTTTCCTGAG 58.910 55.000 0.00 0.00 0.00 3.35
703 713 1.467920 GATGGTTGGCTTTCCTGAGG 58.532 55.000 0.00 0.00 0.00 3.86
704 714 0.779997 ATGGTTGGCTTTCCTGAGGT 59.220 50.000 0.00 0.00 0.00 3.85
705 715 1.440618 TGGTTGGCTTTCCTGAGGTA 58.559 50.000 0.00 0.00 0.00 3.08
706 716 1.073284 TGGTTGGCTTTCCTGAGGTAC 59.927 52.381 0.00 0.00 0.00 3.34
707 717 1.613520 GGTTGGCTTTCCTGAGGTACC 60.614 57.143 2.73 2.73 0.00 3.34
726 736 6.041751 AGGTACCCCTCTAATTAGTGATTTCG 59.958 42.308 8.74 0.00 35.62 3.46
732 742 8.148351 CCCCTCTAATTAGTGATTTCGACATTA 58.852 37.037 14.66 0.00 0.00 1.90
733 743 9.712305 CCCTCTAATTAGTGATTTCGACATTAT 57.288 33.333 14.66 0.00 0.00 1.28
800 810 4.796312 CGTGTTTAAAAATATTGGAGCGGG 59.204 41.667 0.00 0.00 0.00 6.13
820 830 0.031994 CCAAGTTTTGAGTTGGGCCG 59.968 55.000 0.00 0.00 39.76 6.13
837 847 1.862411 GCCGTTTCCGTTTCCAAACAG 60.862 52.381 3.21 0.00 38.81 3.16
846 856 3.796717 CCGTTTCCAAACAGAAGAAAAGC 59.203 43.478 3.21 0.00 38.81 3.51
890 900 4.093952 CGGCCTGCAAAGCTCACG 62.094 66.667 0.00 0.65 0.00 4.35
952 963 2.113131 AAGCGCAACAGCAACGTACC 62.113 55.000 11.47 0.00 40.15 3.34
994 1007 1.216710 CTCTCGTGACCTTCCCTGC 59.783 63.158 0.00 0.00 0.00 4.85
1009 1022 2.817424 TGCTAGAGATGGCAGGCG 59.183 61.111 0.00 0.00 34.22 5.52
1010 1023 2.030262 GCTAGAGATGGCAGGCGG 59.970 66.667 0.00 0.00 0.00 6.13
1011 1024 2.030262 CTAGAGATGGCAGGCGGC 59.970 66.667 0.00 0.00 43.74 6.53
1080 1099 3.434319 CTTGTCCGGCAGCGCAAT 61.434 61.111 11.47 0.00 0.00 3.56
1300 1319 1.944676 GATCTGTAAGCGCCCGTCG 60.945 63.158 2.29 0.00 42.12 5.12
1301 1320 2.609183 GATCTGTAAGCGCCCGTCGT 62.609 60.000 2.29 0.00 41.07 4.34
1302 1321 2.609183 ATCTGTAAGCGCCCGTCGTC 62.609 60.000 2.29 0.00 41.07 4.20
1365 1384 4.704103 TGCCTCTGAGACGGGGCT 62.704 66.667 11.79 0.00 44.36 5.19
1366 1385 4.154347 GCCTCTGAGACGGGGCTG 62.154 72.222 6.17 0.00 41.20 4.85
1367 1386 4.154347 CCTCTGAGACGGGGCTGC 62.154 72.222 6.17 0.00 0.00 5.25
1368 1387 4.504916 CTCTGAGACGGGGCTGCG 62.505 72.222 0.00 0.00 0.00 5.18
1372 1391 3.766691 GAGACGGGGCTGCGGTTA 61.767 66.667 0.00 0.00 0.00 2.85
1377 1398 2.043980 CGGGGCTGCGGTTAATTGT 61.044 57.895 0.00 0.00 0.00 2.71
1400 1421 3.791076 AGGGATGGGACGGGGGAT 61.791 66.667 0.00 0.00 0.00 3.85
1504 1525 1.663702 CTCGGCACCGTCGTTTCTT 60.664 57.895 9.23 0.00 40.74 2.52
1505 1526 1.219522 CTCGGCACCGTCGTTTCTTT 61.220 55.000 9.23 0.00 40.74 2.52
1596 1617 2.981302 TGGACTGCCCAGATGACG 59.019 61.111 1.69 0.00 40.82 4.35
1629 1650 4.699522 ACCAACGAGAAGCGGGCC 62.700 66.667 0.00 0.00 46.49 5.80
1706 1727 0.920664 GCAGTGCCGTTGTTCAAAAC 59.079 50.000 2.85 0.00 0.00 2.43
1707 1728 1.734047 GCAGTGCCGTTGTTCAAAACA 60.734 47.619 2.85 0.00 40.21 2.83
1726 1747 5.528043 AACATACATTGTTCCTTTGCACA 57.472 34.783 0.00 0.00 45.55 4.57
1748 1769 0.919710 GGGCCTCCTTGGAGTAATGT 59.080 55.000 14.77 0.00 38.35 2.71
1826 1849 9.219603 TCTCCGGATTTGTATTCATATCATTTC 57.780 33.333 3.57 0.00 35.00 2.17
1881 1907 5.294060 GGCACTTTGACAATTTGAACAACAT 59.706 36.000 2.79 0.00 0.00 2.71
1918 1944 8.616076 CAAAATACTTCAGGAGTAATTGGCTAG 58.384 37.037 8.84 0.00 43.76 3.42
2010 2036 2.814336 CCCTCAGGTTTTCTGCAACTAC 59.186 50.000 0.00 0.00 43.06 2.73
2029 2055 7.309560 GCAACTACAACCATAAACTTGGGTATT 60.310 37.037 0.00 0.00 41.35 1.89
2089 2115 9.497030 TTGTTTGGAATATTCGTGATAAATTCG 57.503 29.630 9.32 0.00 0.00 3.34
2586 2827 1.028905 CTTGTCGTTTTCCTGGGCAA 58.971 50.000 0.00 0.00 0.00 4.52
2762 3003 1.280421 ACTGTGATCAGCCCTTCTTCC 59.720 52.381 0.00 0.00 44.77 3.46
2805 3046 5.768164 ACGTTCCAGGAAATTATGTGAAAGT 59.232 36.000 2.45 0.00 0.00 2.66
2850 3092 0.098376 AGCTCGTTATGGTCGTCGAC 59.902 55.000 17.16 17.16 0.00 4.20
2996 3238 5.449297 TTCCCATTGATGTTAGATGACCA 57.551 39.130 0.00 0.00 0.00 4.02
2998 3240 3.567164 CCCATTGATGTTAGATGACCAGC 59.433 47.826 0.00 0.00 0.00 4.85
3002 3244 2.571202 TGATGTTAGATGACCAGCACCA 59.429 45.455 0.00 0.00 0.00 4.17
3027 3269 6.285224 TGAGTTTAACTTGTTGCTACTGCTA 58.715 36.000 0.00 0.00 40.48 3.49
3051 3293 6.449698 AGTTGTTGCATTATTTGTTCTCTGG 58.550 36.000 0.00 0.00 0.00 3.86
3067 3309 3.509967 TCTCTGGTCTTGTCGAAGCATTA 59.490 43.478 0.00 0.00 0.00 1.90
3101 3344 4.144297 TCCCTGAAATGTTGGTTCTCTTG 58.856 43.478 0.00 0.00 0.00 3.02
3106 3349 6.183360 CCTGAAATGTTGGTTCTCTTGAAACT 60.183 38.462 0.00 0.00 40.40 2.66
3141 3384 8.331022 CAGTTTTAGGATTCACATCGTAATCAG 58.669 37.037 0.00 0.00 38.79 2.90
3159 3402 7.148573 CGTAATCAGTGCTTCATTCTTTACTGT 60.149 37.037 0.00 0.00 37.42 3.55
3218 3461 3.667497 TTTGAGACTAGCTGTGAGGTG 57.333 47.619 0.00 0.00 0.00 4.00
3227 3470 1.510480 GCTGTGAGGTGTGAGCCAAC 61.510 60.000 0.00 0.00 0.00 3.77
3260 3503 9.722184 GAAATAGTTTCCCCTGTATTATACTCC 57.278 37.037 3.92 0.00 33.56 3.85
3261 3504 7.809880 ATAGTTTCCCCTGTATTATACTCCC 57.190 40.000 3.92 0.00 0.00 4.30
3262 3505 5.800653 AGTTTCCCCTGTATTATACTCCCT 58.199 41.667 3.92 0.00 0.00 4.20
3263 3506 5.845065 AGTTTCCCCTGTATTATACTCCCTC 59.155 44.000 3.92 0.00 0.00 4.30
3264 3507 4.415224 TCCCCTGTATTATACTCCCTCC 57.585 50.000 3.92 0.00 0.00 4.30
3265 3508 3.097614 CCCCTGTATTATACTCCCTCCG 58.902 54.545 3.92 0.00 0.00 4.63
3266 3509 3.501751 CCCCTGTATTATACTCCCTCCGT 60.502 52.174 3.92 0.00 0.00 4.69
3267 3510 4.158015 CCCTGTATTATACTCCCTCCGTT 58.842 47.826 3.92 0.00 0.00 4.44
3268 3511 4.220163 CCCTGTATTATACTCCCTCCGTTC 59.780 50.000 3.92 0.00 0.00 3.95
3269 3512 4.220163 CCTGTATTATACTCCCTCCGTTCC 59.780 50.000 3.92 0.00 0.00 3.62
3270 3513 5.070823 TGTATTATACTCCCTCCGTTCCT 57.929 43.478 3.92 0.00 0.00 3.36
3271 3514 6.204852 TGTATTATACTCCCTCCGTTCCTA 57.795 41.667 3.92 0.00 0.00 2.94
3272 3515 6.613699 TGTATTATACTCCCTCCGTTCCTAA 58.386 40.000 3.92 0.00 0.00 2.69
3273 3516 7.068702 TGTATTATACTCCCTCCGTTCCTAAA 58.931 38.462 3.92 0.00 0.00 1.85
3274 3517 7.731688 TGTATTATACTCCCTCCGTTCCTAAAT 59.268 37.037 3.92 0.00 0.00 1.40
3275 3518 9.247861 GTATTATACTCCCTCCGTTCCTAAATA 57.752 37.037 0.00 0.00 0.00 1.40
3276 3519 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3278 3521 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
3279 3522 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3280 3523 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3281 3524 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3282 3525 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3283 3526 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3284 3527 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3285 3528 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3286 3529 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
3301 3544 6.687081 AGTCTTTCTAGAGATTCCACTACG 57.313 41.667 0.00 0.00 0.00 3.51
3302 3545 5.591067 AGTCTTTCTAGAGATTCCACTACGG 59.409 44.000 0.00 0.00 0.00 4.02
3303 3546 5.589452 GTCTTTCTAGAGATTCCACTACGGA 59.411 44.000 0.00 0.00 44.40 4.69
3304 3547 5.589452 TCTTTCTAGAGATTCCACTACGGAC 59.411 44.000 0.00 0.00 46.36 4.79
3305 3548 4.774660 TCTAGAGATTCCACTACGGACT 57.225 45.455 0.00 0.00 46.36 3.85
3306 3549 5.883685 TCTAGAGATTCCACTACGGACTA 57.116 43.478 0.00 0.00 46.36 2.59
3307 3550 5.609423 TCTAGAGATTCCACTACGGACTAC 58.391 45.833 0.00 0.00 46.36 2.73
3308 3551 4.232188 AGAGATTCCACTACGGACTACA 57.768 45.455 0.00 0.00 46.36 2.74
3309 3552 4.794334 AGAGATTCCACTACGGACTACAT 58.206 43.478 0.00 0.00 46.36 2.29
3310 3553 5.938279 AGAGATTCCACTACGGACTACATA 58.062 41.667 0.00 0.00 46.36 2.29
3311 3554 5.764192 AGAGATTCCACTACGGACTACATAC 59.236 44.000 0.00 0.00 46.36 2.39
3312 3555 4.514441 AGATTCCACTACGGACTACATACG 59.486 45.833 0.00 0.00 46.36 3.06
3313 3556 2.564771 TCCACTACGGACTACATACGG 58.435 52.381 0.00 0.00 39.64 4.02
3314 3557 2.170397 TCCACTACGGACTACATACGGA 59.830 50.000 0.00 0.00 39.64 4.69
3315 3558 2.547211 CCACTACGGACTACATACGGAG 59.453 54.545 0.00 0.00 43.89 4.63
3316 3559 2.032204 CACTACGGACTACATACGGAGC 60.032 54.545 0.00 0.00 42.12 4.70
3317 3560 2.216046 CTACGGACTACATACGGAGCA 58.784 52.381 0.00 0.00 31.15 4.26
3318 3561 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
3319 3562 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
3320 3563 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
3321 3564 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
3322 3565 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
3323 3566 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
3324 3567 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3325 3568 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3326 3569 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3327 3570 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3328 3571 3.935203 ACATACGGAGCAAAATGAGTGAG 59.065 43.478 0.00 0.00 0.00 3.51
3329 3572 2.550830 ACGGAGCAAAATGAGTGAGT 57.449 45.000 0.00 0.00 0.00 3.41
3330 3573 2.417719 ACGGAGCAAAATGAGTGAGTC 58.582 47.619 0.00 0.00 0.00 3.36
3331 3574 2.037772 ACGGAGCAAAATGAGTGAGTCT 59.962 45.455 0.00 0.00 0.00 3.24
3332 3575 3.258372 ACGGAGCAAAATGAGTGAGTCTA 59.742 43.478 0.00 0.00 0.00 2.59
3333 3576 3.614616 CGGAGCAAAATGAGTGAGTCTAC 59.385 47.826 0.00 0.00 0.00 2.59
3334 3577 4.569943 GGAGCAAAATGAGTGAGTCTACA 58.430 43.478 0.00 0.00 0.00 2.74
3335 3578 4.390297 GGAGCAAAATGAGTGAGTCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
3377 3620 6.544928 ACATCTGTATGTAGTCCACATTGA 57.455 37.500 0.00 0.00 46.01 2.57
3378 3621 6.946340 ACATCTGTATGTAGTCCACATTGAA 58.054 36.000 0.00 0.00 46.01 2.69
3379 3622 7.394016 ACATCTGTATGTAGTCCACATTGAAA 58.606 34.615 0.00 0.00 46.01 2.69
3380 3623 8.049117 ACATCTGTATGTAGTCCACATTGAAAT 58.951 33.333 0.00 0.00 46.01 2.17
3381 3624 8.554528 CATCTGTATGTAGTCCACATTGAAATC 58.445 37.037 0.00 0.00 46.01 2.17
3382 3625 7.851228 TCTGTATGTAGTCCACATTGAAATCT 58.149 34.615 0.00 0.00 46.01 2.40
3383 3626 7.981789 TCTGTATGTAGTCCACATTGAAATCTC 59.018 37.037 0.00 0.00 46.01 2.75
3384 3627 7.851228 TGTATGTAGTCCACATTGAAATCTCT 58.149 34.615 0.00 0.00 46.01 3.10
3385 3628 8.977412 TGTATGTAGTCCACATTGAAATCTCTA 58.023 33.333 0.00 0.00 46.01 2.43
3386 3629 9.250624 GTATGTAGTCCACATTGAAATCTCTAC 57.749 37.037 0.00 0.00 46.01 2.59
3387 3630 7.239763 TGTAGTCCACATTGAAATCTCTACA 57.760 36.000 0.00 0.00 34.82 2.74
3388 3631 7.676004 TGTAGTCCACATTGAAATCTCTACAA 58.324 34.615 0.00 0.00 34.46 2.41
3389 3632 8.154203 TGTAGTCCACATTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 34.46 2.83
3390 3633 7.678947 AGTCCACATTGAAATCTCTACAAAG 57.321 36.000 0.00 0.00 0.00 2.77
3391 3634 7.453393 AGTCCACATTGAAATCTCTACAAAGA 58.547 34.615 0.00 0.00 0.00 2.52
3392 3635 7.389053 AGTCCACATTGAAATCTCTACAAAGAC 59.611 37.037 0.00 0.00 0.00 3.01
3393 3636 7.389053 GTCCACATTGAAATCTCTACAAAGACT 59.611 37.037 0.00 0.00 0.00 3.24
3394 3637 7.939039 TCCACATTGAAATCTCTACAAAGACTT 59.061 33.333 0.00 0.00 0.00 3.01
3395 3638 9.219603 CCACATTGAAATCTCTACAAAGACTTA 57.780 33.333 0.00 0.00 0.00 2.24
3397 3640 9.778741 ACATTGAAATCTCTACAAAGACTTACA 57.221 29.630 0.00 0.00 0.00 2.41
3401 3644 9.996554 TGAAATCTCTACAAAGACTTACATTGA 57.003 29.630 0.00 0.00 32.46 2.57
3403 3646 9.442047 AAATCTCTACAAAGACTTACATTGAGG 57.558 33.333 0.00 0.00 32.46 3.86
3404 3647 7.776618 TCTCTACAAAGACTTACATTGAGGA 57.223 36.000 0.00 0.00 32.46 3.71
3405 3648 8.190326 TCTCTACAAAGACTTACATTGAGGAA 57.810 34.615 0.00 0.00 32.46 3.36
3406 3649 8.088981 TCTCTACAAAGACTTACATTGAGGAAC 58.911 37.037 0.00 0.00 32.46 3.62
3407 3650 5.924475 ACAAAGACTTACATTGAGGAACG 57.076 39.130 0.00 0.00 32.46 3.95
3408 3651 4.755123 ACAAAGACTTACATTGAGGAACGG 59.245 41.667 0.00 0.00 32.46 4.44
3409 3652 4.884668 AAGACTTACATTGAGGAACGGA 57.115 40.909 0.00 0.00 0.00 4.69
3410 3653 4.457834 AGACTTACATTGAGGAACGGAG 57.542 45.455 0.00 0.00 0.00 4.63
3411 3654 3.195825 AGACTTACATTGAGGAACGGAGG 59.804 47.826 0.00 0.00 0.00 4.30
3412 3655 2.236395 ACTTACATTGAGGAACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3413 3656 2.241281 TACATTGAGGAACGGAGGGA 57.759 50.000 0.00 0.00 0.00 4.20
3414 3657 0.905357 ACATTGAGGAACGGAGGGAG 59.095 55.000 0.00 0.00 0.00 4.30
3415 3658 0.905357 CATTGAGGAACGGAGGGAGT 59.095 55.000 0.00 0.00 0.00 3.85
3416 3659 2.108168 CATTGAGGAACGGAGGGAGTA 58.892 52.381 0.00 0.00 0.00 2.59
3474 3717 6.773080 CAGTTTTCTGCTGTCTTCTGATATG 58.227 40.000 0.00 0.00 41.24 1.78
3592 3835 2.691011 GTCAGGTTAGTAGCTCTCTGGG 59.309 54.545 0.00 0.00 0.00 4.45
3613 3856 3.244526 GGGGTGCATTTGATTTCCAAGTT 60.245 43.478 0.00 0.00 35.94 2.66
3641 3884 0.372679 GTCTGCTGTGATGCATGACG 59.627 55.000 11.78 7.65 42.48 4.35
3682 3926 2.044946 AGGCGGAAATGGGCAGAC 60.045 61.111 0.00 0.00 0.00 3.51
3692 3936 4.096532 GGAAATGGGCAGACTACTTTAAGC 59.903 45.833 0.00 0.00 0.00 3.09
3893 4137 0.976641 AACATCCGCTGTTGGAGAGA 59.023 50.000 1.32 0.00 46.37 3.10
4000 4244 3.998913 TCAACCATCAATGCTCTGGTA 57.001 42.857 3.14 0.00 42.38 3.25
4057 4301 1.813513 AGACCAAGCATTTCCAGACG 58.186 50.000 0.00 0.00 0.00 4.18
4093 4337 1.009900 GCTCATGCTCTGCGATTGC 60.010 57.895 0.00 0.00 37.70 3.56
4114 4358 0.615850 CTGGTCTGGTCTTCCCTTCC 59.384 60.000 0.00 0.00 0.00 3.46
4252 4496 5.280317 GGAACAGGTTTACAAGATCACCCTA 60.280 44.000 0.00 0.00 0.00 3.53
4261 4505 1.972588 AGATCACCCTACCAAAGCCT 58.027 50.000 0.00 0.00 0.00 4.58
4475 4719 1.788229 TGGAGAGGACAACAGTGACA 58.212 50.000 0.00 0.00 0.00 3.58
4779 5023 2.609459 CCGTTAATCTTGCTGCCAGTAG 59.391 50.000 0.00 0.00 0.00 2.57
4830 5074 0.817229 TTGATGACTTGTGTGCCGCA 60.817 50.000 0.00 0.00 0.00 5.69
4852 5096 1.265454 CGAGCCCCTTCCCTGTAACT 61.265 60.000 0.00 0.00 0.00 2.24
4872 5116 5.662674 ACTCTCCCTCACATTACAAGTAC 57.337 43.478 0.00 0.00 0.00 2.73
4941 5185 9.815936 CATTCCAAAAACATTTCTCTATTTTGC 57.184 29.630 0.00 0.00 38.82 3.68
4960 5204 1.869342 GCTTCAACTTGCGTTTGCCAT 60.869 47.619 0.00 0.00 41.78 4.40
4981 5227 7.093814 TGCCATTTTCTCTGTTGCAGTAATATT 60.094 33.333 0.00 0.00 32.61 1.28
4998 5245 4.965119 ATATTCTCTGTGCCGGTTTTTC 57.035 40.909 1.90 0.00 0.00 2.29
5006 5253 2.224329 TGTGCCGGTTTTTCTAGCAGTA 60.224 45.455 1.90 0.00 33.37 2.74
5192 5498 1.740025 TCACAACACGTTGCATGTTCA 59.260 42.857 9.79 0.00 44.03 3.18
5202 5508 2.680656 TTGCATGTTCAGCAACTGCGA 61.681 47.619 0.00 0.00 46.13 5.10
5203 5509 4.757726 TTGCATGTTCAGCAACTGCGAC 62.758 50.000 0.00 0.00 46.13 5.19
5212 5518 1.055338 GCAACTGCGACAAATTCAGC 58.945 50.000 0.00 0.00 0.00 4.26
5213 5519 1.321016 CAACTGCGACAAATTCAGCG 58.679 50.000 0.00 0.00 0.00 5.18
5214 5520 0.944386 AACTGCGACAAATTCAGCGT 59.056 45.000 0.00 0.00 0.00 5.07
5215 5521 0.944386 ACTGCGACAAATTCAGCGTT 59.056 45.000 0.00 0.00 0.00 4.84
5216 5522 1.333619 ACTGCGACAAATTCAGCGTTT 59.666 42.857 0.00 0.00 0.00 3.60
5217 5523 2.546368 ACTGCGACAAATTCAGCGTTTA 59.454 40.909 0.00 0.00 0.00 2.01
5218 5524 3.002862 ACTGCGACAAATTCAGCGTTTAA 59.997 39.130 0.00 0.00 0.00 1.52
5219 5525 3.953766 TGCGACAAATTCAGCGTTTAAA 58.046 36.364 0.00 0.00 0.00 1.52
5220 5526 4.352039 TGCGACAAATTCAGCGTTTAAAA 58.648 34.783 0.00 0.00 0.00 1.52
5221 5527 4.439449 TGCGACAAATTCAGCGTTTAAAAG 59.561 37.500 0.00 0.00 0.00 2.27
5222 5528 4.439776 GCGACAAATTCAGCGTTTAAAAGT 59.560 37.500 3.09 0.00 0.00 2.66
5223 5529 5.622041 GCGACAAATTCAGCGTTTAAAAGTA 59.378 36.000 3.09 0.00 0.00 2.24
5224 5530 6.141053 GCGACAAATTCAGCGTTTAAAAGTAA 59.859 34.615 3.09 0.00 0.00 2.24
5225 5531 7.305533 GCGACAAATTCAGCGTTTAAAAGTAAA 60.306 33.333 3.09 0.00 0.00 2.01
5226 5532 8.525071 CGACAAATTCAGCGTTTAAAAGTAAAA 58.475 29.630 3.09 0.00 31.02 1.52
5233 5539 7.354257 TCAGCGTTTAAAAGTAAAATAGCGTT 58.646 30.769 3.09 0.00 34.36 4.84
5234 5540 7.531534 TCAGCGTTTAAAAGTAAAATAGCGTTC 59.468 33.333 3.09 0.00 34.36 3.95
5255 5561 3.570975 TCAGAAACGCAGAACTGGTACTA 59.429 43.478 3.99 0.00 0.00 1.82
5258 5564 3.572604 AACGCAGAACTGGTACTACTC 57.427 47.619 3.99 0.00 0.00 2.59
5259 5565 2.511659 ACGCAGAACTGGTACTACTCA 58.488 47.619 3.99 0.00 0.00 3.41
5260 5566 2.889045 ACGCAGAACTGGTACTACTCAA 59.111 45.455 3.99 0.00 0.00 3.02
5261 5567 3.510360 ACGCAGAACTGGTACTACTCAAT 59.490 43.478 3.99 0.00 0.00 2.57
5262 5568 4.021368 ACGCAGAACTGGTACTACTCAATT 60.021 41.667 3.99 0.00 0.00 2.32
5263 5569 5.184479 ACGCAGAACTGGTACTACTCAATTA 59.816 40.000 3.99 0.00 0.00 1.40
5264 5570 6.097356 CGCAGAACTGGTACTACTCAATTAA 58.903 40.000 3.99 0.00 0.00 1.40
5267 5573 9.765795 GCAGAACTGGTACTACTCAATTAATAT 57.234 33.333 3.99 0.00 0.00 1.28
5304 5610 9.817809 TTAAGTGAGTGACAAGTAATATGGATC 57.182 33.333 0.00 0.00 0.00 3.36
5305 5611 7.423844 AGTGAGTGACAAGTAATATGGATCA 57.576 36.000 0.00 0.00 0.00 2.92
5306 5612 7.495901 AGTGAGTGACAAGTAATATGGATCAG 58.504 38.462 0.00 0.00 0.00 2.90
5307 5613 7.343057 AGTGAGTGACAAGTAATATGGATCAGA 59.657 37.037 0.00 0.00 0.00 3.27
5309 5615 7.060383 AGTGACAAGTAATATGGATCAGAGG 57.940 40.000 0.00 0.00 0.00 3.69
5310 5616 6.042552 AGTGACAAGTAATATGGATCAGAGGG 59.957 42.308 0.00 0.00 0.00 4.30
5311 5617 6.042093 GTGACAAGTAATATGGATCAGAGGGA 59.958 42.308 0.00 0.00 0.00 4.20
5407 5730 0.251165 TGAACCTTACAAGCTGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
5408 5731 0.965866 GAACCTTACAAGCTGCCCCC 60.966 60.000 0.00 0.00 0.00 5.40
5409 5732 1.725169 AACCTTACAAGCTGCCCCCA 61.725 55.000 0.00 0.00 0.00 4.96
5410 5733 1.076549 CCTTACAAGCTGCCCCCAA 59.923 57.895 0.00 0.00 0.00 4.12
5411 5734 0.967380 CCTTACAAGCTGCCCCCAAG 60.967 60.000 0.00 0.00 0.00 3.61
5412 5735 0.038166 CTTACAAGCTGCCCCCAAGA 59.962 55.000 0.00 0.00 0.00 3.02
5413 5736 0.480690 TTACAAGCTGCCCCCAAGAA 59.519 50.000 0.00 0.00 0.00 2.52
5414 5737 0.704076 TACAAGCTGCCCCCAAGAAT 59.296 50.000 0.00 0.00 0.00 2.40
5415 5738 0.704076 ACAAGCTGCCCCCAAGAATA 59.296 50.000 0.00 0.00 0.00 1.75
5416 5739 1.106285 CAAGCTGCCCCCAAGAATAC 58.894 55.000 0.00 0.00 0.00 1.89
5417 5740 0.704076 AAGCTGCCCCCAAGAATACA 59.296 50.000 0.00 0.00 0.00 2.29
5418 5741 0.257039 AGCTGCCCCCAAGAATACAG 59.743 55.000 0.00 0.00 0.00 2.74
5419 5742 0.255890 GCTGCCCCCAAGAATACAGA 59.744 55.000 0.00 0.00 0.00 3.41
5420 5743 1.340991 GCTGCCCCCAAGAATACAGAA 60.341 52.381 0.00 0.00 0.00 3.02
5421 5744 2.883888 GCTGCCCCCAAGAATACAGAAA 60.884 50.000 0.00 0.00 0.00 2.52
5508 5846 7.806409 AAATTTGCAAAAGTAGCCAAAGATT 57.194 28.000 17.19 0.00 0.00 2.40
5509 5847 7.806409 AATTTGCAAAAGTAGCCAAAGATTT 57.194 28.000 17.19 0.00 0.00 2.17
5532 7506 2.531522 GCAAACAAGGCCAACAAGAT 57.468 45.000 5.01 0.00 0.00 2.40
5566 8317 1.399440 CCAGCAGTGTCGATGAAATGG 59.601 52.381 0.00 0.00 0.00 3.16
5567 8318 1.089920 AGCAGTGTCGATGAAATGGC 58.910 50.000 0.00 0.00 0.00 4.40
5568 8319 0.804364 GCAGTGTCGATGAAATGGCA 59.196 50.000 0.00 0.00 0.00 4.92
5569 8320 1.199789 GCAGTGTCGATGAAATGGCAA 59.800 47.619 0.00 0.00 0.00 4.52
5570 8321 2.159338 GCAGTGTCGATGAAATGGCAAT 60.159 45.455 0.00 0.00 0.00 3.56
5571 8322 3.431856 CAGTGTCGATGAAATGGCAATG 58.568 45.455 0.00 0.00 0.00 2.82
5572 8323 3.084039 AGTGTCGATGAAATGGCAATGT 58.916 40.909 0.00 0.00 0.00 2.71
5573 8324 4.094739 CAGTGTCGATGAAATGGCAATGTA 59.905 41.667 0.00 0.00 0.00 2.29
5574 8325 4.883585 AGTGTCGATGAAATGGCAATGTAT 59.116 37.500 0.00 0.00 0.00 2.29
5575 8326 6.018016 CAGTGTCGATGAAATGGCAATGTATA 60.018 38.462 0.00 0.00 0.00 1.47
5576 8327 6.542005 AGTGTCGATGAAATGGCAATGTATAA 59.458 34.615 0.00 0.00 0.00 0.98
5577 8328 6.632834 GTGTCGATGAAATGGCAATGTATAAC 59.367 38.462 0.00 0.00 0.00 1.89
5578 8329 6.142817 GTCGATGAAATGGCAATGTATAACC 58.857 40.000 0.00 0.00 0.00 2.85
5579 8330 5.825151 TCGATGAAATGGCAATGTATAACCA 59.175 36.000 0.00 0.00 36.43 3.67
5580 8331 6.319911 TCGATGAAATGGCAATGTATAACCAA 59.680 34.615 0.00 0.00 35.41 3.67
5581 8332 6.977502 CGATGAAATGGCAATGTATAACCAAA 59.022 34.615 0.00 0.00 35.41 3.28
5582 8333 7.652909 CGATGAAATGGCAATGTATAACCAAAT 59.347 33.333 0.00 0.00 35.41 2.32
5583 8334 8.665643 ATGAAATGGCAATGTATAACCAAATG 57.334 30.769 0.00 0.00 35.41 2.32
5589 8340 4.681025 GCAATGTATAACCAAATGGCGATG 59.319 41.667 0.00 0.00 39.32 3.84
5611 8362 8.773645 CGATGTATAACCAAGCAAATCATTCTA 58.226 33.333 0.00 0.00 0.00 2.10
5703 8454 5.416271 ACCAACATATACCGAACAGAACT 57.584 39.130 0.00 0.00 0.00 3.01
5705 8456 5.187186 ACCAACATATACCGAACAGAACTCT 59.813 40.000 0.00 0.00 0.00 3.24
5725 8476 0.539051 GTATGGACAGCCTCAGCACT 59.461 55.000 0.00 0.00 43.56 4.40
5749 8500 3.325870 TGATTCAGACACTAAACGGCAG 58.674 45.455 0.00 0.00 0.00 4.85
5759 8521 5.307204 ACACTAAACGGCAGGTTACATTAA 58.693 37.500 0.00 0.00 38.08 1.40
5774 8536 9.995003 AGGTTACATTAAATTGCTCAAAATTCA 57.005 25.926 0.00 0.00 0.00 2.57
5790 8552 9.903682 CTCAAAATTCACTGACAAATGTCTAAT 57.096 29.630 14.15 6.64 44.99 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.888038 TGATATGCTTCACATGCTTGAC 57.112 40.909 6.60 0.00 40.06 3.18
1 2 4.885325 ACATGATATGCTTCACATGCTTGA 59.115 37.500 6.60 0.00 42.28 3.02
2 3 4.976116 CACATGATATGCTTCACATGCTTG 59.024 41.667 0.00 0.00 42.28 4.01
3 4 4.885325 TCACATGATATGCTTCACATGCTT 59.115 37.500 0.00 0.00 42.28 3.91
4 5 4.457466 TCACATGATATGCTTCACATGCT 58.543 39.130 0.00 4.71 42.28 3.79
5 6 4.823790 TCACATGATATGCTTCACATGC 57.176 40.909 0.00 0.00 42.28 4.06
32 33 4.906065 TTCGCCGTGAAGTACACTATAT 57.094 40.909 0.00 0.00 46.24 0.86
47 48 0.796312 AGCACAATTGTACTTCGCCG 59.204 50.000 11.53 0.00 0.00 6.46
51 52 4.072131 TCAGGGAAGCACAATTGTACTTC 58.928 43.478 31.08 31.08 44.01 3.01
55 56 4.278170 CACTTTCAGGGAAGCACAATTGTA 59.722 41.667 11.53 0.00 0.00 2.41
67 68 2.951642 CTGTGCTTTTCACTTTCAGGGA 59.048 45.455 0.00 0.00 45.81 4.20
71 72 4.484236 CACAACTGTGCTTTTCACTTTCA 58.516 39.130 0.00 0.00 45.81 2.69
88 89 3.103007 GTGCTTCACCGTAAAACACAAC 58.897 45.455 0.00 0.00 0.00 3.32
141 142 6.721571 ACTATGTTTCACACGGAATAACAG 57.278 37.500 0.00 0.00 31.63 3.16
224 225 0.772384 TGGGGGAATTACAACCGTGT 59.228 50.000 0.00 0.00 42.09 4.49
225 226 1.912417 TTGGGGGAATTACAACCGTG 58.088 50.000 0.00 0.00 0.00 4.94
228 229 3.898741 TCACTTTTGGGGGAATTACAACC 59.101 43.478 0.00 0.00 0.00 3.77
230 231 6.561519 TTTTCACTTTTGGGGGAATTACAA 57.438 33.333 0.00 0.00 0.00 2.41
234 235 3.494223 CGCTTTTCACTTTTGGGGGAATT 60.494 43.478 0.00 0.00 0.00 2.17
235 236 2.037121 CGCTTTTCACTTTTGGGGGAAT 59.963 45.455 0.00 0.00 0.00 3.01
242 243 2.216263 CCGAAAGCGCTTTTCACTTTTG 59.784 45.455 34.01 15.39 44.42 2.44
343 353 6.245408 TCATGTTAATAGGCTTGGACAAACT 58.755 36.000 0.00 0.00 0.00 2.66
344 354 6.509418 TCATGTTAATAGGCTTGGACAAAC 57.491 37.500 0.00 0.00 0.00 2.93
347 357 7.118723 AGAATTCATGTTAATAGGCTTGGACA 58.881 34.615 8.44 0.00 0.00 4.02
348 358 7.573968 AGAATTCATGTTAATAGGCTTGGAC 57.426 36.000 8.44 0.00 0.00 4.02
404 414 4.436852 CCGTAATCATGAACCGTTTTCAGG 60.437 45.833 0.00 3.04 0.00 3.86
405 415 4.390603 TCCGTAATCATGAACCGTTTTCAG 59.609 41.667 0.00 0.00 0.00 3.02
424 434 1.691976 TCTCTTGAACCATGTGTCCGT 59.308 47.619 0.00 0.00 0.00 4.69
425 435 2.455674 TCTCTTGAACCATGTGTCCG 57.544 50.000 0.00 0.00 0.00 4.79
430 440 9.480053 CAAAACATTTTATCTCTTGAACCATGT 57.520 29.630 0.00 0.00 0.00 3.21
450 460 6.424176 TCATACACTCGTTGTTTCAAAACA 57.576 33.333 4.24 4.24 46.35 2.83
458 468 4.814234 TGCTTCTTTCATACACTCGTTGTT 59.186 37.500 0.00 0.00 39.91 2.83
463 473 4.990543 TTGTGCTTCTTTCATACACTCG 57.009 40.909 0.00 0.00 32.49 4.18
480 490 5.168526 TGTCGAAACCTGAGAATTTTGTG 57.831 39.130 0.00 0.00 0.00 3.33
487 497 4.482386 CGATACTTGTCGAAACCTGAGAA 58.518 43.478 0.00 0.00 44.06 2.87
490 500 2.029739 TGCGATACTTGTCGAAACCTGA 60.030 45.455 0.00 0.00 44.06 3.86
492 502 2.288579 TGTGCGATACTTGTCGAAACCT 60.289 45.455 0.00 0.00 44.06 3.50
497 507 1.277326 GCATGTGCGATACTTGTCGA 58.723 50.000 0.00 0.00 44.06 4.20
520 530 4.012895 CGTGGTGACAAGTGGCGC 62.013 66.667 0.00 0.00 46.06 6.53
523 533 1.948104 TTTCTCGTGGTGACAAGTGG 58.052 50.000 0.00 0.00 46.06 4.00
560 570 2.344592 TGTTGATCCAGTACCCCTTGT 58.655 47.619 0.00 0.00 0.00 3.16
573 583 3.252974 AGAAGACGGTGGATGTTGATC 57.747 47.619 0.00 0.00 0.00 2.92
574 584 3.600388 GAAGAAGACGGTGGATGTTGAT 58.400 45.455 0.00 0.00 0.00 2.57
575 585 2.609491 CGAAGAAGACGGTGGATGTTGA 60.609 50.000 0.00 0.00 0.00 3.18
576 586 1.726791 CGAAGAAGACGGTGGATGTTG 59.273 52.381 0.00 0.00 0.00 3.33
577 587 1.337823 CCGAAGAAGACGGTGGATGTT 60.338 52.381 0.00 0.00 44.57 2.71
578 588 0.246635 CCGAAGAAGACGGTGGATGT 59.753 55.000 0.00 0.00 44.57 3.06
579 589 3.050703 CCGAAGAAGACGGTGGATG 57.949 57.895 0.00 0.00 44.57 3.51
586 596 1.535896 TGTCTGAGTCCGAAGAAGACG 59.464 52.381 0.00 0.00 0.00 4.18
587 597 2.293677 TGTGTCTGAGTCCGAAGAAGAC 59.706 50.000 0.00 0.00 0.00 3.01
588 598 2.583143 TGTGTCTGAGTCCGAAGAAGA 58.417 47.619 0.00 0.00 0.00 2.87
589 599 3.004839 TCTTGTGTCTGAGTCCGAAGAAG 59.995 47.826 0.00 0.00 0.00 2.85
590 600 2.956333 TCTTGTGTCTGAGTCCGAAGAA 59.044 45.455 0.00 0.00 0.00 2.52
591 601 2.583143 TCTTGTGTCTGAGTCCGAAGA 58.417 47.619 0.00 0.00 0.00 2.87
592 602 3.053455 GTTCTTGTGTCTGAGTCCGAAG 58.947 50.000 0.00 0.00 0.00 3.79
593 603 2.543031 CGTTCTTGTGTCTGAGTCCGAA 60.543 50.000 0.00 0.00 0.00 4.30
594 604 1.001706 CGTTCTTGTGTCTGAGTCCGA 60.002 52.381 0.00 0.00 0.00 4.55
595 605 1.001706 TCGTTCTTGTGTCTGAGTCCG 60.002 52.381 0.00 0.00 0.00 4.79
596 606 2.795175 TCGTTCTTGTGTCTGAGTCC 57.205 50.000 0.00 0.00 0.00 3.85
597 607 3.245519 GGTTTCGTTCTTGTGTCTGAGTC 59.754 47.826 0.00 0.00 0.00 3.36
598 608 3.195661 GGTTTCGTTCTTGTGTCTGAGT 58.804 45.455 0.00 0.00 0.00 3.41
599 609 2.218759 CGGTTTCGTTCTTGTGTCTGAG 59.781 50.000 0.00 0.00 0.00 3.35
600 610 2.198406 CGGTTTCGTTCTTGTGTCTGA 58.802 47.619 0.00 0.00 0.00 3.27
601 611 1.332904 GCGGTTTCGTTCTTGTGTCTG 60.333 52.381 0.00 0.00 38.89 3.51
602 612 0.935196 GCGGTTTCGTTCTTGTGTCT 59.065 50.000 0.00 0.00 38.89 3.41
603 613 0.041576 GGCGGTTTCGTTCTTGTGTC 60.042 55.000 0.00 0.00 38.89 3.67
604 614 0.745128 TGGCGGTTTCGTTCTTGTGT 60.745 50.000 0.00 0.00 38.89 3.72
605 615 0.378962 TTGGCGGTTTCGTTCTTGTG 59.621 50.000 0.00 0.00 38.89 3.33
606 616 1.096416 TTTGGCGGTTTCGTTCTTGT 58.904 45.000 0.00 0.00 38.89 3.16
607 617 2.196295 TTTTGGCGGTTTCGTTCTTG 57.804 45.000 0.00 0.00 38.89 3.02
608 618 2.094649 TGTTTTTGGCGGTTTCGTTCTT 60.095 40.909 0.00 0.00 38.89 2.52
609 619 1.473278 TGTTTTTGGCGGTTTCGTTCT 59.527 42.857 0.00 0.00 38.89 3.01
610 620 1.910688 TGTTTTTGGCGGTTTCGTTC 58.089 45.000 0.00 0.00 38.89 3.95
611 621 2.159226 TCATGTTTTTGGCGGTTTCGTT 60.159 40.909 0.00 0.00 38.89 3.85
612 622 1.405821 TCATGTTTTTGGCGGTTTCGT 59.594 42.857 0.00 0.00 38.89 3.85
613 623 2.126914 TCATGTTTTTGGCGGTTTCG 57.873 45.000 0.00 0.00 39.81 3.46
614 624 3.619038 TGTTTCATGTTTTTGGCGGTTTC 59.381 39.130 0.00 0.00 0.00 2.78
615 625 3.600388 TGTTTCATGTTTTTGGCGGTTT 58.400 36.364 0.00 0.00 0.00 3.27
616 626 3.118956 TCTGTTTCATGTTTTTGGCGGTT 60.119 39.130 0.00 0.00 0.00 4.44
617 627 2.428890 TCTGTTTCATGTTTTTGGCGGT 59.571 40.909 0.00 0.00 0.00 5.68
618 628 3.090952 TCTGTTTCATGTTTTTGGCGG 57.909 42.857 0.00 0.00 0.00 6.13
619 629 3.862267 TGTTCTGTTTCATGTTTTTGGCG 59.138 39.130 0.00 0.00 0.00 5.69
620 630 5.793026 TTGTTCTGTTTCATGTTTTTGGC 57.207 34.783 0.00 0.00 0.00 4.52
621 631 7.201548 CCTCTTTGTTCTGTTTCATGTTTTTGG 60.202 37.037 0.00 0.00 0.00 3.28
622 632 7.545265 TCCTCTTTGTTCTGTTTCATGTTTTTG 59.455 33.333 0.00 0.00 0.00 2.44
623 633 7.610865 TCCTCTTTGTTCTGTTTCATGTTTTT 58.389 30.769 0.00 0.00 0.00 1.94
624 634 7.093771 ACTCCTCTTTGTTCTGTTTCATGTTTT 60.094 33.333 0.00 0.00 0.00 2.43
625 635 6.378280 ACTCCTCTTTGTTCTGTTTCATGTTT 59.622 34.615 0.00 0.00 0.00 2.83
626 636 5.888161 ACTCCTCTTTGTTCTGTTTCATGTT 59.112 36.000 0.00 0.00 0.00 2.71
627 637 5.440610 ACTCCTCTTTGTTCTGTTTCATGT 58.559 37.500 0.00 0.00 0.00 3.21
628 638 6.708054 ACTACTCCTCTTTGTTCTGTTTCATG 59.292 38.462 0.00 0.00 0.00 3.07
629 639 6.831976 ACTACTCCTCTTTGTTCTGTTTCAT 58.168 36.000 0.00 0.00 0.00 2.57
630 640 6.235231 ACTACTCCTCTTTGTTCTGTTTCA 57.765 37.500 0.00 0.00 0.00 2.69
631 641 6.362820 CGTACTACTCCTCTTTGTTCTGTTTC 59.637 42.308 0.00 0.00 0.00 2.78
632 642 6.214399 CGTACTACTCCTCTTTGTTCTGTTT 58.786 40.000 0.00 0.00 0.00 2.83
633 643 5.278858 CCGTACTACTCCTCTTTGTTCTGTT 60.279 44.000 0.00 0.00 0.00 3.16
634 644 4.217983 CCGTACTACTCCTCTTTGTTCTGT 59.782 45.833 0.00 0.00 0.00 3.41
635 645 4.734917 CCGTACTACTCCTCTTTGTTCTG 58.265 47.826 0.00 0.00 0.00 3.02
636 646 3.193056 GCCGTACTACTCCTCTTTGTTCT 59.807 47.826 0.00 0.00 0.00 3.01
637 647 3.057033 TGCCGTACTACTCCTCTTTGTTC 60.057 47.826 0.00 0.00 0.00 3.18
638 648 2.895404 TGCCGTACTACTCCTCTTTGTT 59.105 45.455 0.00 0.00 0.00 2.83
639 649 2.522185 TGCCGTACTACTCCTCTTTGT 58.478 47.619 0.00 0.00 0.00 2.83
640 650 3.056749 AGTTGCCGTACTACTCCTCTTTG 60.057 47.826 0.00 0.00 27.00 2.77
641 651 3.056749 CAGTTGCCGTACTACTCCTCTTT 60.057 47.826 0.00 0.00 31.53 2.52
642 652 2.492484 CAGTTGCCGTACTACTCCTCTT 59.508 50.000 0.00 0.00 31.53 2.85
643 653 2.093106 CAGTTGCCGTACTACTCCTCT 58.907 52.381 0.00 0.00 31.53 3.69
644 654 2.089980 TCAGTTGCCGTACTACTCCTC 58.910 52.381 0.00 0.00 31.53 3.71
645 655 2.211250 TCAGTTGCCGTACTACTCCT 57.789 50.000 0.00 0.00 31.53 3.69
646 656 3.119245 TGATTCAGTTGCCGTACTACTCC 60.119 47.826 0.00 0.00 31.53 3.85
647 657 4.106029 TGATTCAGTTGCCGTACTACTC 57.894 45.455 0.00 0.00 31.53 2.59
648 658 4.737855 ATGATTCAGTTGCCGTACTACT 57.262 40.909 0.00 0.00 34.45 2.57
649 659 5.589192 ACTATGATTCAGTTGCCGTACTAC 58.411 41.667 0.00 0.00 0.00 2.73
650 660 5.593095 AGACTATGATTCAGTTGCCGTACTA 59.407 40.000 0.00 0.00 0.00 1.82
651 661 4.402793 AGACTATGATTCAGTTGCCGTACT 59.597 41.667 0.00 0.00 0.00 2.73
652 662 4.504461 CAGACTATGATTCAGTTGCCGTAC 59.496 45.833 0.00 0.00 0.00 3.67
653 663 4.401202 TCAGACTATGATTCAGTTGCCGTA 59.599 41.667 0.00 0.00 31.12 4.02
654 664 3.195610 TCAGACTATGATTCAGTTGCCGT 59.804 43.478 0.00 0.00 31.12 5.68
655 665 3.553511 GTCAGACTATGATTCAGTTGCCG 59.446 47.826 0.00 0.00 40.92 5.69
656 666 4.331168 GTGTCAGACTATGATTCAGTTGCC 59.669 45.833 1.31 0.00 40.92 4.52
657 667 4.032217 CGTGTCAGACTATGATTCAGTTGC 59.968 45.833 1.31 0.00 40.92 4.17
658 668 5.164233 ACGTGTCAGACTATGATTCAGTTG 58.836 41.667 1.31 0.00 40.92 3.16
659 669 5.392767 ACGTGTCAGACTATGATTCAGTT 57.607 39.130 1.31 0.00 40.92 3.16
660 670 5.392767 AACGTGTCAGACTATGATTCAGT 57.607 39.130 1.31 0.00 40.92 3.41
661 671 4.497251 CGAACGTGTCAGACTATGATTCAG 59.503 45.833 1.31 0.00 40.92 3.02
662 672 4.155280 TCGAACGTGTCAGACTATGATTCA 59.845 41.667 1.31 0.00 40.92 2.57
663 673 4.659088 TCGAACGTGTCAGACTATGATTC 58.341 43.478 1.31 0.00 40.92 2.52
664 674 4.696899 TCGAACGTGTCAGACTATGATT 57.303 40.909 1.31 0.00 40.92 2.57
665 675 4.498177 CCATCGAACGTGTCAGACTATGAT 60.498 45.833 1.31 0.00 40.92 2.45
666 676 3.181500 CCATCGAACGTGTCAGACTATGA 60.181 47.826 1.31 0.00 34.79 2.15
667 677 3.108881 CCATCGAACGTGTCAGACTATG 58.891 50.000 1.31 0.00 0.00 2.23
668 678 2.753452 ACCATCGAACGTGTCAGACTAT 59.247 45.455 1.31 0.00 0.00 2.12
669 679 2.156917 ACCATCGAACGTGTCAGACTA 58.843 47.619 1.31 0.00 0.00 2.59
670 680 0.959553 ACCATCGAACGTGTCAGACT 59.040 50.000 1.31 0.00 0.00 3.24
671 681 1.455786 CAACCATCGAACGTGTCAGAC 59.544 52.381 0.00 0.00 0.00 3.51
672 682 1.604438 CCAACCATCGAACGTGTCAGA 60.604 52.381 0.00 0.00 0.00 3.27
673 683 0.790207 CCAACCATCGAACGTGTCAG 59.210 55.000 0.00 0.00 0.00 3.51
674 684 1.225376 GCCAACCATCGAACGTGTCA 61.225 55.000 0.00 0.00 0.00 3.58
675 685 0.949105 AGCCAACCATCGAACGTGTC 60.949 55.000 0.00 0.00 0.00 3.67
676 686 0.534203 AAGCCAACCATCGAACGTGT 60.534 50.000 0.00 0.00 0.00 4.49
677 687 0.591170 AAAGCCAACCATCGAACGTG 59.409 50.000 0.00 0.00 0.00 4.49
678 688 0.872388 GAAAGCCAACCATCGAACGT 59.128 50.000 0.00 0.00 0.00 3.99
679 689 0.168128 GGAAAGCCAACCATCGAACG 59.832 55.000 0.00 0.00 0.00 3.95
680 690 1.200020 CAGGAAAGCCAACCATCGAAC 59.800 52.381 0.00 0.00 36.29 3.95
681 691 1.073125 TCAGGAAAGCCAACCATCGAA 59.927 47.619 0.00 0.00 36.29 3.71
682 692 0.690192 TCAGGAAAGCCAACCATCGA 59.310 50.000 0.00 0.00 36.29 3.59
683 693 1.089920 CTCAGGAAAGCCAACCATCG 58.910 55.000 0.00 0.00 36.29 3.84
684 694 1.272147 ACCTCAGGAAAGCCAACCATC 60.272 52.381 0.00 0.00 36.29 3.51
685 695 0.779997 ACCTCAGGAAAGCCAACCAT 59.220 50.000 0.00 0.00 36.29 3.55
686 696 1.073284 GTACCTCAGGAAAGCCAACCA 59.927 52.381 0.00 0.00 36.29 3.67
687 697 1.613520 GGTACCTCAGGAAAGCCAACC 60.614 57.143 4.06 0.00 36.29 3.77
688 698 1.822506 GGTACCTCAGGAAAGCCAAC 58.177 55.000 4.06 0.00 36.29 3.77
703 713 6.922407 GTCGAAATCACTAATTAGAGGGGTAC 59.078 42.308 19.38 4.21 0.00 3.34
704 714 6.608405 TGTCGAAATCACTAATTAGAGGGGTA 59.392 38.462 19.38 0.00 0.00 3.69
705 715 5.424252 TGTCGAAATCACTAATTAGAGGGGT 59.576 40.000 19.38 1.87 0.00 4.95
706 716 5.914033 TGTCGAAATCACTAATTAGAGGGG 58.086 41.667 19.38 5.81 0.00 4.79
707 717 9.712305 ATAATGTCGAAATCACTAATTAGAGGG 57.288 33.333 19.38 8.11 0.00 4.30
775 785 6.403418 CCCGCTCCAATATTTTTAAACACGTA 60.403 38.462 0.00 0.00 0.00 3.57
800 810 0.249868 GGCCCAACTCAAAACTTGGC 60.250 55.000 0.00 0.00 36.36 4.52
837 847 4.053983 CCCAGCTTCTTTTGCTTTTCTTC 58.946 43.478 0.00 0.00 38.92 2.87
846 856 0.389025 AAACGGCCCAGCTTCTTTTG 59.611 50.000 0.00 0.00 0.00 2.44
881 891 3.311110 TCCGAGCCCGTGAGCTTT 61.311 61.111 0.00 0.00 45.15 3.51
902 912 2.266055 GGGTTGGAGTCGAGCCTG 59.734 66.667 7.91 0.00 40.83 4.85
952 963 2.571202 AGGAAGGCAGAAGAGAAAGAGG 59.429 50.000 0.00 0.00 0.00 3.69
994 1007 2.030262 GCCGCCTGCCATCTCTAG 59.970 66.667 0.00 0.00 0.00 2.43
1365 1384 2.294791 CCCTGAAACACAATTAACCGCA 59.705 45.455 0.00 0.00 0.00 5.69
1366 1385 2.554893 TCCCTGAAACACAATTAACCGC 59.445 45.455 0.00 0.00 0.00 5.68
1367 1386 4.380444 CCATCCCTGAAACACAATTAACCG 60.380 45.833 0.00 0.00 0.00 4.44
1368 1387 4.081697 CCCATCCCTGAAACACAATTAACC 60.082 45.833 0.00 0.00 0.00 2.85
1372 1391 3.165071 GTCCCATCCCTGAAACACAATT 58.835 45.455 0.00 0.00 0.00 2.32
1377 1398 1.682849 CCGTCCCATCCCTGAAACA 59.317 57.895 0.00 0.00 0.00 2.83
1400 1421 2.192443 CGCCTCTCCTCCTCCGTA 59.808 66.667 0.00 0.00 0.00 4.02
1519 1540 1.752436 CGGCTCATCCTACTCCAGACT 60.752 57.143 0.00 0.00 0.00 3.24
1529 1550 2.191375 CCATGCACGGCTCATCCT 59.809 61.111 0.00 0.00 0.00 3.24
1629 1650 2.581354 CTCCGCCACTCCAGGAAG 59.419 66.667 0.00 0.00 33.10 3.46
1656 1677 1.233019 CAGAGAAGTGCACCAACCTG 58.767 55.000 14.63 12.33 0.00 4.00
1706 1727 4.919168 CAGTGTGCAAAGGAACAATGTATG 59.081 41.667 0.00 0.00 42.41 2.39
1707 1728 4.022068 CCAGTGTGCAAAGGAACAATGTAT 60.022 41.667 2.99 0.00 45.19 2.29
1726 1747 0.178873 TTACTCCAAGGAGGCCCAGT 60.179 55.000 19.62 1.73 45.88 4.00
1788 1810 2.088950 TCCGGAGATTTTCGACAACC 57.911 50.000 0.00 0.00 0.00 3.77
1835 1858 2.830293 AGGTGGGGAGTTACTTAGGTC 58.170 52.381 0.00 0.00 0.00 3.85
1881 1907 9.706691 CTCCTGAAGTATTTTGTAGACAAGTAA 57.293 33.333 0.00 0.00 37.15 2.24
1945 1971 1.609555 GGGTTTTACATTGACGCACCA 59.390 47.619 0.00 0.00 0.00 4.17
2044 2070 9.757227 CCAAACAAGTCCAAGTATGATTTTTAA 57.243 29.630 0.00 0.00 0.00 1.52
2047 2073 7.595819 TCCAAACAAGTCCAAGTATGATTTT 57.404 32.000 0.00 0.00 0.00 1.82
2068 2094 7.307751 GCTTCCGAATTTATCACGAATATTCCA 60.308 37.037 9.87 0.00 0.00 3.53
2089 2115 2.224314 CAGAAAGAACGAACCAGCTTCC 59.776 50.000 0.00 0.00 0.00 3.46
2309 2539 9.444600 GAACACCTCTTTTATAATGGACTTGTA 57.555 33.333 0.00 0.00 0.00 2.41
2503 2744 4.780815 TGTCCAACTGACTGAAAAGTGAT 58.219 39.130 0.00 0.00 44.75 3.06
2641 2882 4.169059 TCACATCAATTCGAATGGGGAT 57.831 40.909 12.25 12.14 0.00 3.85
2656 2897 7.868775 AGAACACATAATGTATGCATCACATC 58.131 34.615 0.19 0.00 42.31 3.06
2762 3003 5.012328 ACGTTAGCTCATTCTAGGGAAAG 57.988 43.478 0.00 0.00 34.90 2.62
2838 3080 3.746900 TCGAGAGTCGACGACCATA 57.253 52.632 23.76 3.40 44.82 2.74
2850 3092 4.434520 GGTAGAACAAGGGATTTCGAGAG 58.565 47.826 0.00 0.00 0.00 3.20
2996 3238 4.499696 GCAACAAGTTAAACTCATGGTGCT 60.500 41.667 12.83 0.00 43.02 4.40
2998 3240 5.186996 AGCAACAAGTTAAACTCATGGTG 57.813 39.130 0.00 0.00 29.25 4.17
3002 3244 5.765182 AGCAGTAGCAACAAGTTAAACTCAT 59.235 36.000 0.00 0.00 45.49 2.90
3027 3269 6.040842 ACCAGAGAACAAATAATGCAACAACT 59.959 34.615 0.00 0.00 0.00 3.16
3051 3293 5.938322 TGGATTTTAATGCTTCGACAAGAC 58.062 37.500 0.00 0.00 0.00 3.01
3067 3309 5.397360 ACATTTCAGGGAGAACTGGATTTT 58.603 37.500 0.00 0.00 40.21 1.82
3141 3384 6.425114 TCAGAAGACAGTAAAGAATGAAGCAC 59.575 38.462 0.00 0.00 0.00 4.40
3159 3402 6.358974 TCAAACACCTCACATATCAGAAGA 57.641 37.500 0.00 0.00 0.00 2.87
3218 3461 5.241662 ACTATTTCTTCTCTGTTGGCTCAC 58.758 41.667 0.00 0.00 0.00 3.51
3227 3470 5.810095 ACAGGGGAAACTATTTCTTCTCTG 58.190 41.667 6.12 6.12 39.59 3.35
3257 3500 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3258 3501 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3259 3502 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3260 3503 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3275 3518 8.842280 CGTAGTGGAATCTCTAGAAAGACTTAT 58.158 37.037 0.00 0.00 0.00 1.73
3276 3519 7.282675 CCGTAGTGGAATCTCTAGAAAGACTTA 59.717 40.741 0.00 0.00 42.00 2.24
3277 3520 6.095720 CCGTAGTGGAATCTCTAGAAAGACTT 59.904 42.308 0.00 0.00 42.00 3.01
3278 3521 5.591067 CCGTAGTGGAATCTCTAGAAAGACT 59.409 44.000 0.00 0.00 42.00 3.24
3279 3522 5.589452 TCCGTAGTGGAATCTCTAGAAAGAC 59.411 44.000 0.00 0.00 46.38 3.01
3280 3523 5.752650 TCCGTAGTGGAATCTCTAGAAAGA 58.247 41.667 0.00 0.00 46.38 2.52
3294 3537 2.547211 CTCCGTATGTAGTCCGTAGTGG 59.453 54.545 0.00 0.00 40.09 4.00
3295 3538 2.032204 GCTCCGTATGTAGTCCGTAGTG 60.032 54.545 0.00 0.00 0.00 2.74
3296 3539 2.216898 GCTCCGTATGTAGTCCGTAGT 58.783 52.381 0.00 0.00 0.00 2.73
3297 3540 2.216046 TGCTCCGTATGTAGTCCGTAG 58.784 52.381 0.00 0.00 0.00 3.51
3298 3541 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
3299 3542 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
3300 3543 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
3301 3544 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3302 3545 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3303 3546 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3304 3547 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3305 3548 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3306 3549 3.935203 CTCACTCATTTTGCTCCGTATGT 59.065 43.478 0.00 0.00 0.00 2.29
3307 3550 3.935203 ACTCACTCATTTTGCTCCGTATG 59.065 43.478 0.00 0.00 0.00 2.39
3308 3551 4.081420 AGACTCACTCATTTTGCTCCGTAT 60.081 41.667 0.00 0.00 0.00 3.06
3309 3552 3.258372 AGACTCACTCATTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
3310 3553 2.037772 AGACTCACTCATTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
3311 3554 2.693069 AGACTCACTCATTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
3312 3555 4.390297 GTGTAGACTCACTCATTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
3313 3556 5.233988 AGTGTAGACTCACTCATTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
3314 3557 5.220710 AGTGTAGACTCACTCATTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
3363 3606 7.239763 TGTAGAGATTTCAATGTGGACTACA 57.760 36.000 0.00 0.00 44.87 2.74
3364 3607 8.547967 TTTGTAGAGATTTCAATGTGGACTAC 57.452 34.615 0.00 0.00 0.00 2.73
3365 3608 8.593679 TCTTTGTAGAGATTTCAATGTGGACTA 58.406 33.333 0.00 0.00 0.00 2.59
3366 3609 7.389053 GTCTTTGTAGAGATTTCAATGTGGACT 59.611 37.037 0.00 0.00 0.00 3.85
3367 3610 7.389053 AGTCTTTGTAGAGATTTCAATGTGGAC 59.611 37.037 0.00 0.00 0.00 4.02
3368 3611 7.453393 AGTCTTTGTAGAGATTTCAATGTGGA 58.547 34.615 0.00 0.00 0.00 4.02
3369 3612 7.678947 AGTCTTTGTAGAGATTTCAATGTGG 57.321 36.000 0.00 0.00 0.00 4.17
3371 3614 9.778741 TGTAAGTCTTTGTAGAGATTTCAATGT 57.221 29.630 0.00 0.00 29.76 2.71
3375 3618 9.996554 TCAATGTAAGTCTTTGTAGAGATTTCA 57.003 29.630 0.00 0.00 34.27 2.69
3377 3620 9.442047 CCTCAATGTAAGTCTTTGTAGAGATTT 57.558 33.333 0.00 0.00 34.27 2.17
3378 3621 8.816894 TCCTCAATGTAAGTCTTTGTAGAGATT 58.183 33.333 0.00 0.00 34.27 2.40
3379 3622 8.367660 TCCTCAATGTAAGTCTTTGTAGAGAT 57.632 34.615 0.00 0.00 34.27 2.75
3380 3623 7.776618 TCCTCAATGTAAGTCTTTGTAGAGA 57.223 36.000 0.00 0.00 34.27 3.10
3381 3624 7.062371 CGTTCCTCAATGTAAGTCTTTGTAGAG 59.938 40.741 0.00 0.00 34.27 2.43
3382 3625 6.866770 CGTTCCTCAATGTAAGTCTTTGTAGA 59.133 38.462 0.00 0.00 34.27 2.59
3383 3626 6.090898 CCGTTCCTCAATGTAAGTCTTTGTAG 59.909 42.308 0.00 0.00 34.27 2.74
3384 3627 5.929992 CCGTTCCTCAATGTAAGTCTTTGTA 59.070 40.000 0.00 0.00 34.27 2.41
3385 3628 4.755123 CCGTTCCTCAATGTAAGTCTTTGT 59.245 41.667 0.00 0.00 34.27 2.83
3386 3629 4.994852 TCCGTTCCTCAATGTAAGTCTTTG 59.005 41.667 0.00 0.00 34.02 2.77
3387 3630 5.223449 TCCGTTCCTCAATGTAAGTCTTT 57.777 39.130 0.00 0.00 0.00 2.52
3388 3631 4.322801 CCTCCGTTCCTCAATGTAAGTCTT 60.323 45.833 0.00 0.00 0.00 3.01
3389 3632 3.195825 CCTCCGTTCCTCAATGTAAGTCT 59.804 47.826 0.00 0.00 0.00 3.24
3390 3633 3.522553 CCTCCGTTCCTCAATGTAAGTC 58.477 50.000 0.00 0.00 0.00 3.01
3391 3634 2.236395 CCCTCCGTTCCTCAATGTAAGT 59.764 50.000 0.00 0.00 0.00 2.24
3392 3635 2.500098 TCCCTCCGTTCCTCAATGTAAG 59.500 50.000 0.00 0.00 0.00 2.34
3393 3636 2.500098 CTCCCTCCGTTCCTCAATGTAA 59.500 50.000 0.00 0.00 0.00 2.41
3394 3637 2.108168 CTCCCTCCGTTCCTCAATGTA 58.892 52.381 0.00 0.00 0.00 2.29
3395 3638 0.905357 CTCCCTCCGTTCCTCAATGT 59.095 55.000 0.00 0.00 0.00 2.71
3396 3639 0.905357 ACTCCCTCCGTTCCTCAATG 59.095 55.000 0.00 0.00 0.00 2.82
3397 3640 2.024273 TCTACTCCCTCCGTTCCTCAAT 60.024 50.000 0.00 0.00 0.00 2.57
3398 3641 1.356738 TCTACTCCCTCCGTTCCTCAA 59.643 52.381 0.00 0.00 0.00 3.02
3399 3642 0.997363 TCTACTCCCTCCGTTCCTCA 59.003 55.000 0.00 0.00 0.00 3.86
3400 3643 1.750206 GTTCTACTCCCTCCGTTCCTC 59.250 57.143 0.00 0.00 0.00 3.71
3401 3644 1.358445 AGTTCTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
3402 3645 1.477295 CAGTTCTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
3403 3646 2.169330 ACAGTTCTACTCCCTCCGTTC 58.831 52.381 0.00 0.00 0.00 3.95
3404 3647 2.305858 ACAGTTCTACTCCCTCCGTT 57.694 50.000 0.00 0.00 0.00 4.44
3405 3648 2.299297 CAAACAGTTCTACTCCCTCCGT 59.701 50.000 0.00 0.00 0.00 4.69
3406 3649 2.299297 ACAAACAGTTCTACTCCCTCCG 59.701 50.000 0.00 0.00 0.00 4.63
3407 3650 4.353383 AACAAACAGTTCTACTCCCTCC 57.647 45.455 0.00 0.00 34.74 4.30
3408 3651 7.981102 ATAAAACAAACAGTTCTACTCCCTC 57.019 36.000 0.00 0.00 40.26 4.30
3409 3652 7.778382 ACAATAAAACAAACAGTTCTACTCCCT 59.222 33.333 0.00 0.00 40.26 4.20
3410 3653 7.937649 ACAATAAAACAAACAGTTCTACTCCC 58.062 34.615 0.00 0.00 40.26 4.30
3416 3659 9.528018 CCACAATACAATAAAACAAACAGTTCT 57.472 29.630 0.00 0.00 40.26 3.01
3462 3705 9.400638 CGTAGGAAAAGATACATATCAGAAGAC 57.599 37.037 1.88 0.00 35.17 3.01
3492 3735 6.211587 TCAATTTCCTGTGCATATTCCTTG 57.788 37.500 0.00 0.00 0.00 3.61
3552 3795 4.556233 TGACACTCAGTGGTAAAAGATCG 58.444 43.478 10.28 0.00 37.94 3.69
3592 3835 3.683365 ACTTGGAAATCAAATGCACCC 57.317 42.857 0.00 0.00 34.56 4.61
3613 3856 2.708216 TCACAGCAGACACCAAAGAA 57.292 45.000 0.00 0.00 0.00 2.52
3710 3954 3.941483 GCAGCTTTAGCAGACCAGAATAA 59.059 43.478 4.33 0.00 45.16 1.40
3893 4137 6.597280 GCAGATTCAGAACTAGATTCAGGTTT 59.403 38.462 0.00 0.00 40.09 3.27
4000 4244 0.969894 CACCGGTCTTCTTCTCACCT 59.030 55.000 2.59 0.00 0.00 4.00
4084 4328 2.110967 CAGACCAGGGCAATCGCAG 61.111 63.158 0.00 0.00 41.24 5.18
4087 4331 1.450312 GACCAGACCAGGGCAATCG 60.450 63.158 0.00 0.00 36.38 3.34
4093 4337 0.842467 AAGGGAAGACCAGACCAGGG 60.842 60.000 0.00 0.00 43.89 4.45
4114 4358 2.539346 CATGCCTCGAGCTTGAAAAG 57.461 50.000 6.99 0.00 46.89 2.27
4261 4505 4.322273 CGAGATGCTTCCTCATATGCCTTA 60.322 45.833 0.00 0.00 0.00 2.69
4475 4719 1.280133 TGCAGTGCTTGAGCCTTCTAT 59.720 47.619 17.60 0.00 41.18 1.98
4779 5023 1.399791 ACTAACCTACGACGCTAGTGC 59.600 52.381 2.40 0.00 0.00 4.40
4836 5080 0.542333 GAGAGTTACAGGGAAGGGGC 59.458 60.000 0.00 0.00 0.00 5.80
4843 5087 1.938585 TGTGAGGGAGAGTTACAGGG 58.061 55.000 0.00 0.00 0.00 4.45
4844 5088 4.466370 TGTAATGTGAGGGAGAGTTACAGG 59.534 45.833 0.00 0.00 30.96 4.00
4852 5096 3.773119 GGGTACTTGTAATGTGAGGGAGA 59.227 47.826 0.00 0.00 0.00 3.71
4872 5116 4.822685 TTTTCCATCCAAACATCATGGG 57.177 40.909 0.00 0.00 38.13 4.00
4960 5204 8.939929 CAGAGAATATTACTGCAACAGAGAAAA 58.060 33.333 0.78 0.00 35.18 2.29
4981 5227 2.870435 GCTAGAAAAACCGGCACAGAGA 60.870 50.000 0.00 0.00 0.00 3.10
4998 5245 0.898320 ACCAGCCAGTGTACTGCTAG 59.102 55.000 6.50 4.05 42.47 3.42
5006 5253 1.826385 GCTTTCATACCAGCCAGTGT 58.174 50.000 0.00 0.00 0.00 3.55
5090 5338 2.414691 GCACGGCAAGAATTTCTTCCTC 60.415 50.000 8.71 2.16 33.78 3.71
5152 5414 3.942115 TGACCTGTTTTGTTCATCGACAA 59.058 39.130 0.00 0.00 37.73 3.18
5192 5498 1.335324 GCTGAATTTGTCGCAGTTGCT 60.335 47.619 2.29 0.00 39.32 3.91
5198 5504 3.610786 TTAAACGCTGAATTTGTCGCA 57.389 38.095 0.00 0.00 0.00 5.10
5199 5505 4.439776 ACTTTTAAACGCTGAATTTGTCGC 59.560 37.500 0.00 0.00 0.00 5.19
5207 5513 7.354257 ACGCTATTTTACTTTTAAACGCTGAA 58.646 30.769 0.00 0.00 0.00 3.02
5210 5516 7.354257 TGAACGCTATTTTACTTTTAAACGCT 58.646 30.769 0.00 0.00 0.00 5.07
5211 5517 7.531534 TCTGAACGCTATTTTACTTTTAAACGC 59.468 33.333 0.00 0.00 0.00 4.84
5212 5518 8.922738 TCTGAACGCTATTTTACTTTTAAACG 57.077 30.769 0.00 0.00 0.00 3.60
5233 5539 2.364324 AGTACCAGTTCTGCGTTTCTGA 59.636 45.455 0.00 0.00 0.00 3.27
5234 5540 2.755650 AGTACCAGTTCTGCGTTTCTG 58.244 47.619 0.00 0.00 0.00 3.02
5278 5584 9.817809 GATCCATATTACTTGTCACTCACTTAA 57.182 33.333 0.00 0.00 0.00 1.85
5279 5585 8.977412 TGATCCATATTACTTGTCACTCACTTA 58.023 33.333 0.00 0.00 0.00 2.24
5281 5587 7.343057 TCTGATCCATATTACTTGTCACTCACT 59.657 37.037 0.00 0.00 0.00 3.41
5282 5588 7.492524 TCTGATCCATATTACTTGTCACTCAC 58.507 38.462 0.00 0.00 0.00 3.51
5283 5589 7.201947 CCTCTGATCCATATTACTTGTCACTCA 60.202 40.741 0.00 0.00 0.00 3.41
5284 5590 7.151308 CCTCTGATCCATATTACTTGTCACTC 58.849 42.308 0.00 0.00 0.00 3.51
5287 5593 6.143206 TCCCTCTGATCCATATTACTTGTCA 58.857 40.000 0.00 0.00 0.00 3.58
5288 5594 6.268847 ACTCCCTCTGATCCATATTACTTGTC 59.731 42.308 0.00 0.00 0.00 3.18
5289 5595 6.146760 ACTCCCTCTGATCCATATTACTTGT 58.853 40.000 0.00 0.00 0.00 3.16
5290 5596 6.678568 ACTCCCTCTGATCCATATTACTTG 57.321 41.667 0.00 0.00 0.00 3.16
5291 5597 6.726764 GGTACTCCCTCTGATCCATATTACTT 59.273 42.308 0.00 0.00 0.00 2.24
5292 5598 6.047359 AGGTACTCCCTCTGATCCATATTACT 59.953 42.308 0.00 0.00 40.71 2.24
5293 5599 6.257586 AGGTACTCCCTCTGATCCATATTAC 58.742 44.000 0.00 0.00 40.71 1.89
5294 5600 6.485388 AGGTACTCCCTCTGATCCATATTA 57.515 41.667 0.00 0.00 40.71 0.98
5295 5601 5.361630 AGGTACTCCCTCTGATCCATATT 57.638 43.478 0.00 0.00 40.71 1.28
5344 5651 7.913674 TGTTTTGGCAGTTCAATTTAAACTT 57.086 28.000 7.05 0.00 34.79 2.66
5407 5730 2.483877 TGCTGCGTTTCTGTATTCTTGG 59.516 45.455 0.00 0.00 0.00 3.61
5408 5731 3.433274 TCTGCTGCGTTTCTGTATTCTTG 59.567 43.478 0.00 0.00 0.00 3.02
5409 5732 3.664107 TCTGCTGCGTTTCTGTATTCTT 58.336 40.909 0.00 0.00 0.00 2.52
5410 5733 3.319137 TCTGCTGCGTTTCTGTATTCT 57.681 42.857 0.00 0.00 0.00 2.40
5411 5734 4.083802 AGTTTCTGCTGCGTTTCTGTATTC 60.084 41.667 0.00 0.00 0.00 1.75
5412 5735 3.815401 AGTTTCTGCTGCGTTTCTGTATT 59.185 39.130 0.00 0.00 0.00 1.89
5413 5736 3.403038 AGTTTCTGCTGCGTTTCTGTAT 58.597 40.909 0.00 0.00 0.00 2.29
5414 5737 2.833794 AGTTTCTGCTGCGTTTCTGTA 58.166 42.857 0.00 0.00 0.00 2.74
5415 5738 1.668419 AGTTTCTGCTGCGTTTCTGT 58.332 45.000 0.00 0.00 0.00 3.41
5416 5739 2.763249 AAGTTTCTGCTGCGTTTCTG 57.237 45.000 0.00 0.00 0.00 3.02
5417 5740 2.682856 TGAAAGTTTCTGCTGCGTTTCT 59.317 40.909 16.33 0.00 0.00 2.52
5418 5741 3.065019 TGAAAGTTTCTGCTGCGTTTC 57.935 42.857 16.33 0.00 0.00 2.78
5419 5742 3.502191 TTGAAAGTTTCTGCTGCGTTT 57.498 38.095 16.33 0.00 0.00 3.60
5420 5743 3.715628 ATTGAAAGTTTCTGCTGCGTT 57.284 38.095 16.33 0.00 0.00 4.84
5421 5744 3.066621 TGAATTGAAAGTTTCTGCTGCGT 59.933 39.130 16.33 0.00 0.00 5.24
5513 5851 2.137523 CATCTTGTTGGCCTTGTTTGC 58.862 47.619 3.32 0.00 0.00 3.68
5515 5853 1.761784 TGCATCTTGTTGGCCTTGTTT 59.238 42.857 3.32 0.00 0.00 2.83
5527 7501 1.812571 GGTGTTACCCTGTGCATCTTG 59.187 52.381 0.00 0.00 30.04 3.02
5528 7502 1.423541 TGGTGTTACCCTGTGCATCTT 59.576 47.619 0.00 0.00 37.50 2.40
5532 7506 1.228124 GCTGGTGTTACCCTGTGCA 60.228 57.895 0.00 0.00 37.50 4.57
5566 8317 4.300189 TCGCCATTTGGTTATACATTGC 57.700 40.909 0.00 0.00 37.57 3.56
5567 8318 5.830912 ACATCGCCATTTGGTTATACATTG 58.169 37.500 0.00 0.00 37.57 2.82
5568 8319 7.759489 ATACATCGCCATTTGGTTATACATT 57.241 32.000 0.00 0.00 37.57 2.71
5569 8320 8.726988 GTTATACATCGCCATTTGGTTATACAT 58.273 33.333 0.00 0.00 37.57 2.29
5570 8321 7.173562 GGTTATACATCGCCATTTGGTTATACA 59.826 37.037 0.00 0.00 37.57 2.29
5571 8322 7.173562 TGGTTATACATCGCCATTTGGTTATAC 59.826 37.037 0.00 0.00 37.57 1.47
5572 8323 7.225011 TGGTTATACATCGCCATTTGGTTATA 58.775 34.615 0.00 0.00 37.57 0.98
5573 8324 6.065374 TGGTTATACATCGCCATTTGGTTAT 58.935 36.000 0.00 0.00 37.57 1.89
5574 8325 5.437946 TGGTTATACATCGCCATTTGGTTA 58.562 37.500 0.00 0.00 37.57 2.85
5575 8326 4.274147 TGGTTATACATCGCCATTTGGTT 58.726 39.130 0.00 0.00 37.57 3.67
5576 8327 3.892284 TGGTTATACATCGCCATTTGGT 58.108 40.909 0.00 0.00 37.57 3.67
5577 8328 4.792704 GCTTGGTTATACATCGCCATTTGG 60.793 45.833 0.00 0.00 38.53 3.28
5578 8329 4.202000 TGCTTGGTTATACATCGCCATTTG 60.202 41.667 0.00 0.00 0.00 2.32
5579 8330 3.951037 TGCTTGGTTATACATCGCCATTT 59.049 39.130 0.00 0.00 0.00 2.32
5580 8331 3.550820 TGCTTGGTTATACATCGCCATT 58.449 40.909 0.00 0.00 0.00 3.16
5581 8332 3.207265 TGCTTGGTTATACATCGCCAT 57.793 42.857 0.00 0.00 0.00 4.40
5582 8333 2.700722 TGCTTGGTTATACATCGCCA 57.299 45.000 0.00 0.00 0.00 5.69
5583 8334 4.036262 TGATTTGCTTGGTTATACATCGCC 59.964 41.667 0.00 0.00 0.00 5.54
5611 8362 8.055181 ACACAGTTATAAACATGGGATTCTCAT 58.945 33.333 0.00 0.00 0.00 2.90
5705 8456 0.250234 GTGCTGAGGCTGTCCATACA 59.750 55.000 0.00 0.00 39.59 2.29
5725 8476 3.325870 CCGTTTAGTGTCTGAATCAGCA 58.674 45.455 5.18 4.40 0.00 4.41
5759 8521 7.496591 ACATTTGTCAGTGAATTTTGAGCAATT 59.503 29.630 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.