Multiple sequence alignment - TraesCS5D01G382100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G382100 chr5D 100.000 2480 0 0 1 2480 451971653 451969174 0.000000e+00 4580.0
1 TraesCS5D01G382100 chr5D 84.157 890 52 29 621 1502 451955939 451955131 0.000000e+00 780.0
2 TraesCS5D01G382100 chr5D 83.432 169 18 6 1944 2102 361145051 361144883 5.530000e-32 148.0
3 TraesCS5D01G382100 chr5D 79.426 209 25 15 1725 1930 451954827 451954634 5.570000e-27 132.0
4 TraesCS5D01G382100 chr5B 88.817 930 60 22 551 1471 551799832 551798938 0.000000e+00 1101.0
5 TraesCS5D01G382100 chr5B 86.422 928 56 38 550 1471 551740793 551739930 0.000000e+00 952.0
6 TraesCS5D01G382100 chr5B 86.469 473 31 14 998 1470 551764843 551764404 2.870000e-134 488.0
7 TraesCS5D01G382100 chr5B 86.010 386 27 15 547 927 551767768 551767405 2.990000e-104 388.0
8 TraesCS5D01G382100 chr5B 86.331 278 27 5 1943 2209 494535540 494535817 2.410000e-75 292.0
9 TraesCS5D01G382100 chr5B 87.719 114 13 1 1725 1838 551764057 551763945 5.570000e-27 132.0
10 TraesCS5D01G382100 chr5A 87.721 904 46 33 575 1471 570789452 570788607 0.000000e+00 994.0
11 TraesCS5D01G382100 chr5A 88.442 597 42 13 911 1502 570784986 570784412 0.000000e+00 695.0
12 TraesCS5D01G382100 chr5A 88.166 338 22 4 892 1224 570792023 570791699 1.080000e-103 387.0
13 TraesCS5D01G382100 chr5A 87.192 203 19 7 37 237 31286184 31286381 8.930000e-55 224.0
14 TraesCS5D01G382100 chr5A 88.108 185 16 6 43 225 684631866 684631686 5.370000e-52 215.0
15 TraesCS5D01G382100 chr5A 83.529 170 14 6 1943 2102 65548873 65549038 1.990000e-31 147.0
16 TraesCS5D01G382100 chr5A 84.146 82 9 3 236 316 547506854 547506776 2.640000e-10 76.8
17 TraesCS5D01G382100 chr5A 86.364 66 9 0 465 530 705350576 705350511 3.420000e-09 73.1
18 TraesCS5D01G382100 chr2A 82.075 530 67 14 1936 2441 53624929 53624404 6.340000e-116 427.0
19 TraesCS5D01G382100 chr2A 83.036 336 31 10 1943 2266 36852265 36852586 5.220000e-72 281.0
20 TraesCS5D01G382100 chr2A 93.478 46 2 1 1 45 216837844 216837799 1.590000e-07 67.6
21 TraesCS5D01G382100 chr7A 81.749 526 68 14 1941 2441 587064231 587063709 4.930000e-112 414.0
22 TraesCS5D01G382100 chr7A 86.047 215 23 7 31 243 162899901 162900110 8.930000e-55 224.0
23 TraesCS5D01G382100 chr7A 91.228 57 4 1 236 291 4592401 4592457 2.640000e-10 76.8
24 TraesCS5D01G382100 chr4A 81.051 533 65 19 1943 2442 633079848 633080377 2.310000e-105 392.0
25 TraesCS5D01G382100 chr4A 80.451 532 68 25 1943 2441 633132194 633132722 8.380000e-100 374.0
26 TraesCS5D01G382100 chr4A 85.938 320 34 6 1939 2247 55803874 55803555 5.110000e-87 331.0
27 TraesCS5D01G382100 chr4A 83.237 173 16 8 1942 2102 26007653 26007482 1.990000e-31 147.0
28 TraesCS5D01G382100 chr4A 82.486 177 19 6 1937 2102 486295668 486295493 7.150000e-31 145.0
29 TraesCS5D01G382100 chr4A 83.030 165 17 6 2237 2392 55803534 55803372 3.330000e-29 139.0
30 TraesCS5D01G382100 chr4A 81.176 170 19 7 1943 2100 26012529 26012361 9.310000e-25 124.0
31 TraesCS5D01G382100 chr4A 89.286 56 6 0 261 316 542995711 542995656 1.230000e-08 71.3
32 TraesCS5D01G382100 chr7D 94.022 184 9 1 38 221 168790965 168791146 6.760000e-71 278.0
33 TraesCS5D01G382100 chr7D 86.047 172 12 8 1940 2100 167555205 167555375 9.120000e-40 174.0
34 TraesCS5D01G382100 chr7D 81.308 107 15 5 222 326 619292293 619292396 5.680000e-12 82.4
35 TraesCS5D01G382100 chr7D 82.292 96 8 7 222 316 44291934 44291847 9.510000e-10 75.0
36 TraesCS5D01G382100 chr1A 90.608 181 17 0 41 221 531509490 531509670 8.860000e-60 241.0
37 TraesCS5D01G382100 chr3A 88.000 200 22 2 28 226 691376571 691376769 4.120000e-58 235.0
38 TraesCS5D01G382100 chr3A 89.071 183 15 5 43 223 379828220 379828399 3.210000e-54 222.0
39 TraesCS5D01G382100 chr3A 86.341 205 22 6 29 231 507465305 507465105 4.150000e-53 219.0
40 TraesCS5D01G382100 chr2D 89.130 184 18 2 41 223 71922766 71922584 6.900000e-56 228.0
41 TraesCS5D01G382100 chr2D 85.882 170 14 5 1943 2102 69542198 69542367 3.280000e-39 172.0
42 TraesCS5D01G382100 chr2D 92.500 80 6 0 235 314 498332331 498332410 5.600000e-22 115.0
43 TraesCS5D01G382100 chr2D 87.692 65 3 1 2397 2456 15106010 15105946 1.230000e-08 71.3
44 TraesCS5D01G382100 chr2D 93.478 46 2 1 1 45 198728665 198728620 1.590000e-07 67.6
45 TraesCS5D01G382100 chr2D 94.737 38 1 1 1 38 175607956 175607992 9.580000e-05 58.4
46 TraesCS5D01G382100 chr4D 84.211 171 16 3 1943 2102 15220114 15220284 3.300000e-34 156.0
47 TraesCS5D01G382100 chr4D 88.172 93 9 2 224 316 8594022 8593932 2.610000e-20 110.0
48 TraesCS5D01G382100 chr4D 90.909 66 6 0 1822 1887 99237337 99237272 3.400000e-14 89.8
49 TraesCS5D01G382100 chr4D 91.071 56 5 0 261 316 54056548 54056603 2.640000e-10 76.8
50 TraesCS5D01G382100 chr1B 81.081 185 21 5 1930 2102 172268226 172268044 4.300000e-28 135.0
51 TraesCS5D01G382100 chr1B 85.882 85 11 1 1931 2015 545274116 545274199 3.400000e-14 89.8
52 TraesCS5D01G382100 chr6D 79.381 194 23 8 1695 1887 75524892 75525069 1.200000e-23 121.0
53 TraesCS5D01G382100 chr6D 93.939 66 4 0 1822 1887 75531449 75531514 1.570000e-17 100.0
54 TraesCS5D01G382100 chr6A 78.947 171 25 6 1943 2102 457682437 457682267 3.370000e-19 106.0
55 TraesCS5D01G382100 chr3B 78.000 200 14 14 2302 2473 743543399 743543202 5.640000e-17 99.0
56 TraesCS5D01G382100 chr3B 86.765 68 9 0 463 530 740135063 740135130 2.640000e-10 76.8
57 TraesCS5D01G382100 chrUn 86.765 68 9 0 463 530 325517486 325517553 2.640000e-10 76.8
58 TraesCS5D01G382100 chrUn 86.765 68 9 0 463 530 325559017 325558950 2.640000e-10 76.8
59 TraesCS5D01G382100 chr2B 93.617 47 1 2 1 45 585195781 585195827 4.430000e-08 69.4
60 TraesCS5D01G382100 chr3D 89.583 48 5 0 269 316 611923294 611923341 7.410000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G382100 chr5D 451969174 451971653 2479 True 4580 4580 100.000000 1 2480 1 chr5D.!!$R2 2479
1 TraesCS5D01G382100 chr5D 451954634 451955939 1305 True 456 780 81.791500 621 1930 2 chr5D.!!$R3 1309
2 TraesCS5D01G382100 chr5B 551798938 551799832 894 True 1101 1101 88.817000 551 1471 1 chr5B.!!$R2 920
3 TraesCS5D01G382100 chr5B 551739930 551740793 863 True 952 952 86.422000 550 1471 1 chr5B.!!$R1 921
4 TraesCS5D01G382100 chr5B 551763945 551767768 3823 True 336 488 86.732667 547 1838 3 chr5B.!!$R3 1291
5 TraesCS5D01G382100 chr5A 570784412 570792023 7611 True 692 994 88.109667 575 1502 3 chr5A.!!$R4 927
6 TraesCS5D01G382100 chr2A 53624404 53624929 525 True 427 427 82.075000 1936 2441 1 chr2A.!!$R1 505
7 TraesCS5D01G382100 chr7A 587063709 587064231 522 True 414 414 81.749000 1941 2441 1 chr7A.!!$R1 500
8 TraesCS5D01G382100 chr4A 633079848 633080377 529 False 392 392 81.051000 1943 2442 1 chr4A.!!$F1 499
9 TraesCS5D01G382100 chr4A 633132194 633132722 528 False 374 374 80.451000 1943 2441 1 chr4A.!!$F2 498
10 TraesCS5D01G382100 chr4A 55803372 55803874 502 True 235 331 84.484000 1939 2392 2 chr4A.!!$R5 453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 11170 0.102481 GGAGAACGGATGCTCGCTAA 59.898 55.0 0.0 0.0 31.95 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.844696 TTAATCTTGCATGGAGATTCGTAC 57.155 37.500 13.99 0.00 41.59 3.67
25 26 3.885724 TCTTGCATGGAGATTCGTACA 57.114 42.857 0.00 0.00 0.00 2.90
26 27 3.521560 TCTTGCATGGAGATTCGTACAC 58.478 45.455 0.00 0.00 0.00 2.90
27 28 3.056179 TCTTGCATGGAGATTCGTACACA 60.056 43.478 0.00 0.00 0.00 3.72
28 29 3.326836 TGCATGGAGATTCGTACACAA 57.673 42.857 0.00 0.00 0.00 3.33
30 31 4.260985 TGCATGGAGATTCGTACACAAAT 58.739 39.130 0.00 0.00 0.00 2.32
31 32 4.699735 TGCATGGAGATTCGTACACAAATT 59.300 37.500 0.00 0.00 0.00 1.82
32 33 5.182950 TGCATGGAGATTCGTACACAAATTT 59.817 36.000 0.00 0.00 0.00 1.82
33 34 6.092748 GCATGGAGATTCGTACACAAATTTT 58.907 36.000 0.00 0.00 0.00 1.82
34 35 6.251376 GCATGGAGATTCGTACACAAATTTTC 59.749 38.462 0.00 0.00 0.00 2.29
35 36 7.530010 CATGGAGATTCGTACACAAATTTTCT 58.470 34.615 0.00 0.00 0.00 2.52
36 37 7.504924 TGGAGATTCGTACACAAATTTTCTT 57.495 32.000 0.00 0.00 0.00 2.52
39 40 8.073768 GGAGATTCGTACACAAATTTTCTTTCA 58.926 33.333 0.00 0.00 0.00 2.69
40 41 9.107367 GAGATTCGTACACAAATTTTCTTTCAG 57.893 33.333 0.00 0.00 0.00 3.02
41 42 8.621286 AGATTCGTACACAAATTTTCTTTCAGT 58.379 29.630 0.00 0.00 0.00 3.41
43 44 8.973835 TTCGTACACAAATTTTCTTTCAGTTT 57.026 26.923 0.00 0.00 0.00 2.66
44 45 8.973835 TCGTACACAAATTTTCTTTCAGTTTT 57.026 26.923 0.00 0.00 0.00 2.43
45 46 8.855279 TCGTACACAAATTTTCTTTCAGTTTTG 58.145 29.630 0.00 0.00 0.00 2.44
46 47 8.643752 CGTACACAAATTTTCTTTCAGTTTTGT 58.356 29.630 0.00 0.00 37.68 2.83
61 62 7.891183 TCAGTTTTGTTAGAACTCATCTAGC 57.109 36.000 0.00 0.00 41.59 3.42
62 63 7.671302 TCAGTTTTGTTAGAACTCATCTAGCT 58.329 34.615 0.00 0.00 41.59 3.32
63 64 7.600375 TCAGTTTTGTTAGAACTCATCTAGCTG 59.400 37.037 0.00 0.00 41.59 4.24
64 65 7.600375 CAGTTTTGTTAGAACTCATCTAGCTGA 59.400 37.037 0.00 0.00 41.59 4.26
65 66 7.816995 AGTTTTGTTAGAACTCATCTAGCTGAG 59.183 37.037 19.62 19.62 46.59 3.35
80 81 9.243637 CATCTAGCTGAGTTTTAGTTATGTCTC 57.756 37.037 0.00 0.00 0.00 3.36
81 82 8.349568 TCTAGCTGAGTTTTAGTTATGTCTCA 57.650 34.615 0.00 0.00 0.00 3.27
82 83 8.972127 TCTAGCTGAGTTTTAGTTATGTCTCAT 58.028 33.333 0.00 0.00 32.73 2.90
83 84 9.593134 CTAGCTGAGTTTTAGTTATGTCTCATT 57.407 33.333 0.00 0.00 32.73 2.57
84 85 8.485976 AGCTGAGTTTTAGTTATGTCTCATTC 57.514 34.615 0.00 0.00 32.73 2.67
85 86 8.097038 AGCTGAGTTTTAGTTATGTCTCATTCA 58.903 33.333 0.00 0.00 32.73 2.57
86 87 8.171840 GCTGAGTTTTAGTTATGTCTCATTCAC 58.828 37.037 0.00 0.00 32.73 3.18
87 88 9.429359 CTGAGTTTTAGTTATGTCTCATTCACT 57.571 33.333 0.00 0.00 32.73 3.41
88 89 9.778741 TGAGTTTTAGTTATGTCTCATTCACTT 57.221 29.630 0.00 0.00 0.00 3.16
96 97 9.331282 AGTTATGTCTCATTCACTTTTATAGCC 57.669 33.333 0.00 0.00 0.00 3.93
98 99 9.851686 TTATGTCTCATTCACTTTTATAGCCAT 57.148 29.630 0.00 0.00 0.00 4.40
99 100 8.757982 ATGTCTCATTCACTTTTATAGCCATT 57.242 30.769 0.00 0.00 0.00 3.16
100 101 7.988737 TGTCTCATTCACTTTTATAGCCATTG 58.011 34.615 0.00 0.00 0.00 2.82
102 103 7.283127 GTCTCATTCACTTTTATAGCCATTGGA 59.717 37.037 6.95 0.00 0.00 3.53
103 104 8.000709 TCTCATTCACTTTTATAGCCATTGGAT 58.999 33.333 6.95 1.78 0.00 3.41
104 105 7.944061 TCATTCACTTTTATAGCCATTGGATG 58.056 34.615 6.95 0.00 0.00 3.51
108 109 7.062322 TCACTTTTATAGCCATTGGATGTGAT 58.938 34.615 6.95 0.00 0.00 3.06
109 110 7.013559 TCACTTTTATAGCCATTGGATGTGATG 59.986 37.037 6.95 0.00 0.00 3.07
110 111 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
112 113 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
113 114 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
115 116 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
116 117 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
117 118 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
118 119 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
120 121 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
121 122 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
122 123 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
123 124 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
124 125 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
126 127 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
128 129 3.245518 TGCTATAAGATGCGTGTGTGT 57.754 42.857 0.00 0.00 0.00 3.72
130 131 3.370672 TGCTATAAGATGCGTGTGTGTTG 59.629 43.478 0.00 0.00 0.00 3.33
131 132 3.616821 GCTATAAGATGCGTGTGTGTTGA 59.383 43.478 0.00 0.00 0.00 3.18
132 133 4.271049 GCTATAAGATGCGTGTGTGTTGAT 59.729 41.667 0.00 0.00 0.00 2.57
133 134 5.462068 GCTATAAGATGCGTGTGTGTTGATA 59.538 40.000 0.00 0.00 0.00 2.15
134 135 6.146184 GCTATAAGATGCGTGTGTGTTGATAT 59.854 38.462 0.00 0.00 0.00 1.63
135 136 7.328493 GCTATAAGATGCGTGTGTGTTGATATA 59.672 37.037 0.00 0.00 0.00 0.86
136 137 5.973651 AAGATGCGTGTGTGTTGATATAG 57.026 39.130 0.00 0.00 0.00 1.31
138 139 3.603158 TGCGTGTGTGTTGATATAGGT 57.397 42.857 0.00 0.00 0.00 3.08
139 140 3.932822 TGCGTGTGTGTTGATATAGGTT 58.067 40.909 0.00 0.00 0.00 3.50
140 141 3.682377 TGCGTGTGTGTTGATATAGGTTG 59.318 43.478 0.00 0.00 0.00 3.77
141 142 3.063452 GCGTGTGTGTTGATATAGGTTGG 59.937 47.826 0.00 0.00 0.00 3.77
142 143 4.250464 CGTGTGTGTTGATATAGGTTGGT 58.750 43.478 0.00 0.00 0.00 3.67
143 144 5.412640 CGTGTGTGTTGATATAGGTTGGTA 58.587 41.667 0.00 0.00 0.00 3.25
145 146 6.403878 GTGTGTGTTGATATAGGTTGGTACT 58.596 40.000 0.00 0.00 0.00 2.73
146 147 6.534079 GTGTGTGTTGATATAGGTTGGTACTC 59.466 42.308 0.00 0.00 0.00 2.59
148 149 5.962031 TGTGTTGATATAGGTTGGTACTCCT 59.038 40.000 9.07 9.07 37.23 3.69
149 150 6.442564 TGTGTTGATATAGGTTGGTACTCCTT 59.557 38.462 9.30 2.98 35.45 3.36
151 152 7.827729 GTGTTGATATAGGTTGGTACTCCTTTT 59.172 37.037 9.30 3.05 35.45 2.27
152 153 8.387813 TGTTGATATAGGTTGGTACTCCTTTTT 58.612 33.333 9.30 0.20 35.45 1.94
153 154 8.890718 GTTGATATAGGTTGGTACTCCTTTTTC 58.109 37.037 9.30 7.62 35.45 2.29
154 155 8.153221 TGATATAGGTTGGTACTCCTTTTTCA 57.847 34.615 9.30 9.38 35.45 2.69
155 156 8.778059 TGATATAGGTTGGTACTCCTTTTTCAT 58.222 33.333 9.30 1.93 35.45 2.57
156 157 9.274206 GATATAGGTTGGTACTCCTTTTTCATC 57.726 37.037 9.30 1.72 35.45 2.92
157 158 5.584551 AGGTTGGTACTCCTTTTTCATCT 57.415 39.130 0.00 0.00 30.60 2.90
158 159 5.316987 AGGTTGGTACTCCTTTTTCATCTG 58.683 41.667 0.00 0.00 30.60 2.90
160 161 5.535030 GGTTGGTACTCCTTTTTCATCTGTT 59.465 40.000 0.00 0.00 34.23 3.16
161 162 6.294010 GGTTGGTACTCCTTTTTCATCTGTTC 60.294 42.308 0.00 0.00 34.23 3.18
162 163 6.187727 TGGTACTCCTTTTTCATCTGTTCT 57.812 37.500 0.00 0.00 34.23 3.01
164 165 5.998363 GGTACTCCTTTTTCATCTGTTCTGT 59.002 40.000 0.00 0.00 0.00 3.41
165 166 6.147985 GGTACTCCTTTTTCATCTGTTCTGTC 59.852 42.308 0.00 0.00 0.00 3.51
166 167 5.934781 ACTCCTTTTTCATCTGTTCTGTCT 58.065 37.500 0.00 0.00 0.00 3.41
167 168 6.360618 ACTCCTTTTTCATCTGTTCTGTCTT 58.639 36.000 0.00 0.00 0.00 3.01
168 169 6.484977 ACTCCTTTTTCATCTGTTCTGTCTTC 59.515 38.462 0.00 0.00 0.00 2.87
171 172 6.293845 CCTTTTTCATCTGTTCTGTCTTCCAG 60.294 42.308 0.00 0.00 42.97 3.86
172 173 3.969287 TCATCTGTTCTGTCTTCCAGG 57.031 47.619 0.00 0.00 41.83 4.45
173 174 3.242867 TCATCTGTTCTGTCTTCCAGGT 58.757 45.455 0.00 0.00 41.83 4.00
174 175 3.007290 TCATCTGTTCTGTCTTCCAGGTG 59.993 47.826 0.00 0.00 41.83 4.00
175 176 2.677914 TCTGTTCTGTCTTCCAGGTGA 58.322 47.619 0.00 0.00 41.83 4.02
176 177 3.038280 TCTGTTCTGTCTTCCAGGTGAA 58.962 45.455 0.00 0.00 41.83 3.18
177 178 3.648067 TCTGTTCTGTCTTCCAGGTGAAT 59.352 43.478 0.00 0.00 41.83 2.57
178 179 3.743521 TGTTCTGTCTTCCAGGTGAATG 58.256 45.455 0.00 0.00 41.83 2.67
179 180 3.390967 TGTTCTGTCTTCCAGGTGAATGA 59.609 43.478 0.00 0.00 41.83 2.57
180 181 3.969287 TCTGTCTTCCAGGTGAATGAG 57.031 47.619 0.00 0.00 41.83 2.90
181 182 3.510459 TCTGTCTTCCAGGTGAATGAGA 58.490 45.455 0.00 0.00 41.83 3.27
182 183 4.099633 TCTGTCTTCCAGGTGAATGAGAT 58.900 43.478 0.00 0.00 41.83 2.75
184 185 3.840078 TGTCTTCCAGGTGAATGAGATCA 59.160 43.478 0.00 0.00 31.06 2.92
185 186 4.286808 TGTCTTCCAGGTGAATGAGATCAA 59.713 41.667 0.00 0.00 31.06 2.57
186 187 5.221904 TGTCTTCCAGGTGAATGAGATCAAA 60.222 40.000 0.00 0.00 31.06 2.69
187 188 5.884792 GTCTTCCAGGTGAATGAGATCAAAT 59.115 40.000 0.00 0.00 31.06 2.32
188 189 7.050377 GTCTTCCAGGTGAATGAGATCAAATA 58.950 38.462 0.00 0.00 31.06 1.40
189 190 7.554118 GTCTTCCAGGTGAATGAGATCAAATAA 59.446 37.037 0.00 0.00 31.06 1.40
190 191 8.277197 TCTTCCAGGTGAATGAGATCAAATAAT 58.723 33.333 0.00 0.00 31.06 1.28
191 192 9.565090 CTTCCAGGTGAATGAGATCAAATAATA 57.435 33.333 0.00 0.00 31.06 0.98
221 222 6.738635 TCTAAATGAGTTCTAGGTACTCCCA 58.261 40.000 17.72 6.62 41.02 4.37
222 223 7.363031 TCTAAATGAGTTCTAGGTACTCCCAT 58.637 38.462 17.72 8.12 41.02 4.00
223 224 6.893020 AAATGAGTTCTAGGTACTCCCATT 57.107 37.500 17.72 12.01 41.02 3.16
224 225 6.893020 AATGAGTTCTAGGTACTCCCATTT 57.107 37.500 17.72 8.13 41.02 2.32
225 226 6.893020 ATGAGTTCTAGGTACTCCCATTTT 57.107 37.500 17.72 1.12 41.02 1.82
227 228 6.023603 TGAGTTCTAGGTACTCCCATTTTCT 58.976 40.000 17.72 0.00 41.02 2.52
228 229 6.500751 TGAGTTCTAGGTACTCCCATTTTCTT 59.499 38.462 17.72 0.00 41.02 2.52
229 230 7.017254 TGAGTTCTAGGTACTCCCATTTTCTTT 59.983 37.037 17.72 0.00 41.02 2.52
230 231 7.756614 AGTTCTAGGTACTCCCATTTTCTTTT 58.243 34.615 0.00 0.00 41.75 2.27
231 232 8.225416 AGTTCTAGGTACTCCCATTTTCTTTTT 58.775 33.333 0.00 0.00 41.75 1.94
232 233 9.511272 GTTCTAGGTACTCCCATTTTCTTTTTA 57.489 33.333 0.00 0.00 41.75 1.52
235 236 9.516546 CTAGGTACTCCCATTTTCTTTTTAGTT 57.483 33.333 0.00 0.00 41.75 2.24
236 237 8.777578 AGGTACTCCCATTTTCTTTTTAGTTT 57.222 30.769 0.00 0.00 34.66 2.66
237 238 9.209048 AGGTACTCCCATTTTCTTTTTAGTTTT 57.791 29.630 0.00 0.00 34.66 2.43
238 239 9.826574 GGTACTCCCATTTTCTTTTTAGTTTTT 57.173 29.630 0.00 0.00 0.00 1.94
301 302 6.925211 ACTTGATTAAGTCTCAATCGACTGA 58.075 36.000 0.00 0.00 43.53 3.41
303 304 7.094162 ACTTGATTAAGTCTCAATCGACTGAGA 60.094 37.037 21.83 21.83 43.53 3.27
309 310 2.946329 TCTCAATCGACTGAGACCTAGC 59.054 50.000 21.83 0.00 45.45 3.42
310 311 2.025155 TCAATCGACTGAGACCTAGCC 58.975 52.381 0.00 0.00 0.00 3.93
311 312 1.751351 CAATCGACTGAGACCTAGCCA 59.249 52.381 0.00 0.00 0.00 4.75
312 313 1.394618 ATCGACTGAGACCTAGCCAC 58.605 55.000 0.00 0.00 0.00 5.01
313 314 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
314 315 0.171455 CGACTGAGACCTAGCCACAC 59.829 60.000 0.00 0.00 0.00 3.82
315 316 0.533032 GACTGAGACCTAGCCACACC 59.467 60.000 0.00 0.00 0.00 4.16
317 318 1.228769 TGAGACCTAGCCACACCGT 60.229 57.895 0.00 0.00 0.00 4.83
318 319 0.038599 TGAGACCTAGCCACACCGTA 59.961 55.000 0.00 0.00 0.00 4.02
319 320 1.180029 GAGACCTAGCCACACCGTAA 58.820 55.000 0.00 0.00 0.00 3.18
320 321 1.755380 GAGACCTAGCCACACCGTAAT 59.245 52.381 0.00 0.00 0.00 1.89
321 322 1.755380 AGACCTAGCCACACCGTAATC 59.245 52.381 0.00 0.00 0.00 1.75
322 323 1.755380 GACCTAGCCACACCGTAATCT 59.245 52.381 0.00 0.00 0.00 2.40
323 324 2.167900 GACCTAGCCACACCGTAATCTT 59.832 50.000 0.00 0.00 0.00 2.40
325 326 3.965347 ACCTAGCCACACCGTAATCTTAT 59.035 43.478 0.00 0.00 0.00 1.73
326 327 5.142639 ACCTAGCCACACCGTAATCTTATA 58.857 41.667 0.00 0.00 0.00 0.98
327 328 5.243283 ACCTAGCCACACCGTAATCTTATAG 59.757 44.000 0.00 0.00 0.00 1.31
328 329 3.991367 AGCCACACCGTAATCTTATAGC 58.009 45.455 0.00 0.00 0.00 2.97
329 330 3.064931 GCCACACCGTAATCTTATAGCC 58.935 50.000 0.00 0.00 0.00 3.93
330 331 3.660865 CCACACCGTAATCTTATAGCCC 58.339 50.000 0.00 0.00 0.00 5.19
331 332 3.323979 CCACACCGTAATCTTATAGCCCT 59.676 47.826 0.00 0.00 0.00 5.19
332 333 4.202326 CCACACCGTAATCTTATAGCCCTT 60.202 45.833 0.00 0.00 0.00 3.95
333 334 5.365619 CACACCGTAATCTTATAGCCCTTT 58.634 41.667 0.00 0.00 0.00 3.11
334 335 5.465724 CACACCGTAATCTTATAGCCCTTTC 59.534 44.000 0.00 0.00 0.00 2.62
335 336 4.995487 CACCGTAATCTTATAGCCCTTTCC 59.005 45.833 0.00 0.00 0.00 3.13
337 338 4.262335 CCGTAATCTTATAGCCCTTTCCGT 60.262 45.833 0.00 0.00 0.00 4.69
338 339 4.922103 CGTAATCTTATAGCCCTTTCCGTC 59.078 45.833 0.00 0.00 0.00 4.79
339 340 5.278858 CGTAATCTTATAGCCCTTTCCGTCT 60.279 44.000 0.00 0.00 0.00 4.18
340 341 5.632034 AATCTTATAGCCCTTTCCGTCTT 57.368 39.130 0.00 0.00 0.00 3.01
341 342 5.632034 ATCTTATAGCCCTTTCCGTCTTT 57.368 39.130 0.00 0.00 0.00 2.52
345 346 2.186532 AGCCCTTTCCGTCTTTTCTC 57.813 50.000 0.00 0.00 0.00 2.87
346 347 1.700186 AGCCCTTTCCGTCTTTTCTCT 59.300 47.619 0.00 0.00 0.00 3.10
347 348 2.904434 AGCCCTTTCCGTCTTTTCTCTA 59.096 45.455 0.00 0.00 0.00 2.43
348 349 3.001414 GCCCTTTCCGTCTTTTCTCTAC 58.999 50.000 0.00 0.00 0.00 2.59
349 350 3.306849 GCCCTTTCCGTCTTTTCTCTACT 60.307 47.826 0.00 0.00 0.00 2.57
350 351 4.496360 CCCTTTCCGTCTTTTCTCTACTC 58.504 47.826 0.00 0.00 0.00 2.59
351 352 4.496360 CCTTTCCGTCTTTTCTCTACTCC 58.504 47.826 0.00 0.00 0.00 3.85
352 353 4.021368 CCTTTCCGTCTTTTCTCTACTCCA 60.021 45.833 0.00 0.00 0.00 3.86
353 354 5.337652 CCTTTCCGTCTTTTCTCTACTCCAT 60.338 44.000 0.00 0.00 0.00 3.41
354 355 4.720649 TCCGTCTTTTCTCTACTCCATG 57.279 45.455 0.00 0.00 0.00 3.66
355 356 4.341487 TCCGTCTTTTCTCTACTCCATGA 58.659 43.478 0.00 0.00 0.00 3.07
356 357 4.399618 TCCGTCTTTTCTCTACTCCATGAG 59.600 45.833 0.00 0.00 35.52 2.90
357 358 4.440802 CCGTCTTTTCTCTACTCCATGAGG 60.441 50.000 0.00 0.00 33.35 3.86
358 359 4.399618 CGTCTTTTCTCTACTCCATGAGGA 59.600 45.833 0.00 0.00 43.21 3.71
359 360 5.068460 CGTCTTTTCTCTACTCCATGAGGAT 59.932 44.000 0.00 0.00 44.70 3.24
360 361 6.406400 CGTCTTTTCTCTACTCCATGAGGATT 60.406 42.308 0.00 0.00 44.70 3.01
361 362 6.760770 GTCTTTTCTCTACTCCATGAGGATTG 59.239 42.308 0.00 0.00 44.70 2.67
362 363 6.669591 TCTTTTCTCTACTCCATGAGGATTGA 59.330 38.462 0.00 0.00 44.70 2.57
363 364 7.346698 TCTTTTCTCTACTCCATGAGGATTGAT 59.653 37.037 0.00 0.00 44.70 2.57
364 365 6.662865 TTCTCTACTCCATGAGGATTGATC 57.337 41.667 0.00 0.00 44.70 2.92
365 366 5.709594 TCTCTACTCCATGAGGATTGATCA 58.290 41.667 0.00 0.00 44.70 2.92
366 367 6.138967 TCTCTACTCCATGAGGATTGATCAA 58.861 40.000 11.26 11.26 44.70 2.57
367 368 6.786461 TCTCTACTCCATGAGGATTGATCAAT 59.214 38.462 20.85 20.85 44.70 2.57
368 369 7.291885 TCTCTACTCCATGAGGATTGATCAATT 59.708 37.037 21.57 7.36 44.70 2.32
369 370 7.809238 TCTACTCCATGAGGATTGATCAATTT 58.191 34.615 21.57 13.25 44.70 1.82
371 372 6.670617 ACTCCATGAGGATTGATCAATTTCT 58.329 36.000 21.57 20.03 44.70 2.52
372 373 7.809238 ACTCCATGAGGATTGATCAATTTCTA 58.191 34.615 21.57 9.95 44.70 2.10
373 374 8.446394 ACTCCATGAGGATTGATCAATTTCTAT 58.554 33.333 21.57 11.60 44.70 1.98
374 375 8.859236 TCCATGAGGATTGATCAATTTCTATC 57.141 34.615 21.57 14.62 39.61 2.08
375 376 7.886970 TCCATGAGGATTGATCAATTTCTATCC 59.113 37.037 21.57 17.09 43.89 2.59
376 377 7.668469 CCATGAGGATTGATCAATTTCTATCCA 59.332 37.037 21.57 15.19 45.12 3.41
377 378 9.074576 CATGAGGATTGATCAATTTCTATCCAA 57.925 33.333 21.57 10.82 45.12 3.53
378 379 9.824216 ATGAGGATTGATCAATTTCTATCCAAT 57.176 29.630 21.57 12.36 45.12 3.16
381 382 9.525826 AGGATTGATCAATTTCTATCCAATACC 57.474 33.333 21.57 12.83 45.12 2.73
382 383 9.300681 GGATTGATCAATTTCTATCCAATACCA 57.699 33.333 21.57 0.00 43.38 3.25
389 390 9.473007 TCAATTTCTATCCAATACCAATTCACA 57.527 29.630 0.00 0.00 0.00 3.58
390 391 9.520204 CAATTTCTATCCAATACCAATTCACAC 57.480 33.333 0.00 0.00 0.00 3.82
391 392 7.639113 TTTCTATCCAATACCAATTCACACC 57.361 36.000 0.00 0.00 0.00 4.16
392 393 5.690865 TCTATCCAATACCAATTCACACCC 58.309 41.667 0.00 0.00 0.00 4.61
394 395 5.725551 ATCCAATACCAATTCACACCCTA 57.274 39.130 0.00 0.00 0.00 3.53
395 396 5.522315 TCCAATACCAATTCACACCCTAA 57.478 39.130 0.00 0.00 0.00 2.69
396 397 6.086011 TCCAATACCAATTCACACCCTAAT 57.914 37.500 0.00 0.00 0.00 1.73
397 398 6.126409 TCCAATACCAATTCACACCCTAATC 58.874 40.000 0.00 0.00 0.00 1.75
398 399 6.069088 TCCAATACCAATTCACACCCTAATCT 60.069 38.462 0.00 0.00 0.00 2.40
399 400 6.607198 CCAATACCAATTCACACCCTAATCTT 59.393 38.462 0.00 0.00 0.00 2.40
400 401 7.777910 CCAATACCAATTCACACCCTAATCTTA 59.222 37.037 0.00 0.00 0.00 2.10
404 405 6.998673 ACCAATTCACACCCTAATCTTATAGC 59.001 38.462 0.00 0.00 0.00 2.97
405 406 6.431234 CCAATTCACACCCTAATCTTATAGCC 59.569 42.308 0.00 0.00 0.00 3.93
407 408 4.827789 TCACACCCTAATCTTATAGCCCT 58.172 43.478 0.00 0.00 0.00 5.19
408 409 4.593206 TCACACCCTAATCTTATAGCCCTG 59.407 45.833 0.00 0.00 0.00 4.45
409 410 3.910627 ACACCCTAATCTTATAGCCCTGG 59.089 47.826 0.00 0.00 0.00 4.45
410 411 4.168101 CACCCTAATCTTATAGCCCTGGA 58.832 47.826 0.00 0.00 0.00 3.86
411 412 4.020128 CACCCTAATCTTATAGCCCTGGAC 60.020 50.000 0.00 0.00 0.00 4.02
412 413 3.195825 CCCTAATCTTATAGCCCTGGACG 59.804 52.174 0.00 0.00 0.00 4.79
413 414 4.087182 CCTAATCTTATAGCCCTGGACGA 58.913 47.826 0.00 0.00 0.00 4.20
414 415 4.082136 CCTAATCTTATAGCCCTGGACGAC 60.082 50.000 0.00 0.00 0.00 4.34
415 416 2.750141 TCTTATAGCCCTGGACGACT 57.250 50.000 0.00 0.00 0.00 4.18
416 417 3.028094 TCTTATAGCCCTGGACGACTT 57.972 47.619 0.00 0.00 0.00 3.01
417 418 3.371965 TCTTATAGCCCTGGACGACTTT 58.628 45.455 0.00 0.00 0.00 2.66
418 419 3.773119 TCTTATAGCCCTGGACGACTTTT 59.227 43.478 0.00 0.00 0.00 2.27
419 420 4.224370 TCTTATAGCCCTGGACGACTTTTT 59.776 41.667 0.00 0.00 0.00 1.94
514 515 6.530019 AAACTTTGACTCAAGACAAATGGT 57.470 33.333 7.83 2.37 38.54 3.55
515 516 7.639113 AAACTTTGACTCAAGACAAATGGTA 57.361 32.000 7.83 0.00 38.54 3.25
516 517 6.619801 ACTTTGACTCAAGACAAATGGTAC 57.380 37.500 7.83 0.00 38.54 3.34
534 535 6.184580 TGGTACAAGTACAATTATTTGCGG 57.815 37.500 12.00 0.00 37.78 5.69
535 536 5.938710 TGGTACAAGTACAATTATTTGCGGA 59.061 36.000 12.00 0.00 37.78 5.54
537 538 4.965062 ACAAGTACAATTATTTGCGGACG 58.035 39.130 0.00 0.00 36.22 4.79
539 540 3.864243 AGTACAATTATTTGCGGACGGA 58.136 40.909 0.00 0.00 36.22 4.69
540 541 3.869246 AGTACAATTATTTGCGGACGGAG 59.131 43.478 0.00 0.00 36.22 4.63
541 542 2.980568 ACAATTATTTGCGGACGGAGA 58.019 42.857 0.00 0.00 36.22 3.71
542 543 2.936498 ACAATTATTTGCGGACGGAGAG 59.064 45.455 0.00 0.00 36.22 3.20
543 544 3.194861 CAATTATTTGCGGACGGAGAGA 58.805 45.455 0.00 0.00 0.00 3.10
545 546 1.471119 TATTTGCGGACGGAGAGAGT 58.529 50.000 0.00 0.00 0.00 3.24
549 550 1.101635 TGCGGACGGAGAGAGTATGG 61.102 60.000 0.00 0.00 0.00 2.74
553 554 2.376109 GGACGGAGAGAGTATGGTTGA 58.624 52.381 0.00 0.00 0.00 3.18
652 2650 1.070776 GGAAGACAGCGACGTTGTTTC 60.071 52.381 18.56 19.76 0.00 2.78
654 2652 1.935933 AGACAGCGACGTTGTTTCTT 58.064 45.000 18.56 2.99 0.00 2.52
655 2653 3.088194 AGACAGCGACGTTGTTTCTTA 57.912 42.857 18.56 0.00 0.00 2.10
657 2655 4.056050 AGACAGCGACGTTGTTTCTTATT 58.944 39.130 18.56 0.00 0.00 1.40
658 2656 4.150098 AGACAGCGACGTTGTTTCTTATTC 59.850 41.667 18.56 3.53 0.00 1.75
719 2727 5.848036 CGGTAATCGCATCTTGATTCATTTC 59.152 40.000 0.00 0.00 37.28 2.17
720 2728 6.511605 CGGTAATCGCATCTTGATTCATTTCA 60.512 38.462 0.00 0.00 37.28 2.69
733 2741 8.449251 TTGATTCATTTCAAAAGGGGAAAAAG 57.551 30.769 0.00 0.00 37.74 2.27
734 2742 6.997476 TGATTCATTTCAAAAGGGGAAAAAGG 59.003 34.615 0.00 0.00 37.74 3.11
735 2743 6.567602 TTCATTTCAAAAGGGGAAAAAGGA 57.432 33.333 0.00 0.00 37.74 3.36
736 2744 6.173427 TCATTTCAAAAGGGGAAAAAGGAG 57.827 37.500 0.00 0.00 37.74 3.69
737 2745 5.902431 TCATTTCAAAAGGGGAAAAAGGAGA 59.098 36.000 0.00 0.00 37.74 3.71
738 2746 5.869649 TTTCAAAAGGGGAAAAAGGAGAG 57.130 39.130 0.00 0.00 31.72 3.20
739 2747 4.806952 TCAAAAGGGGAAAAAGGAGAGA 57.193 40.909 0.00 0.00 0.00 3.10
740 2748 4.729868 TCAAAAGGGGAAAAAGGAGAGAG 58.270 43.478 0.00 0.00 0.00 3.20
741 2749 4.415512 TCAAAAGGGGAAAAAGGAGAGAGA 59.584 41.667 0.00 0.00 0.00 3.10
972 5513 1.449601 CGGTAGTTCGCCTGGCATT 60.450 57.895 20.29 3.01 0.00 3.56
973 5514 1.024579 CGGTAGTTCGCCTGGCATTT 61.025 55.000 20.29 3.37 0.00 2.32
1190 9893 0.731417 ACGCTTATGACGTACGAGCT 59.269 50.000 24.41 7.83 43.02 4.09
1195 9898 1.091197 TATGACGTACGAGCTGGCGA 61.091 55.000 24.41 0.00 34.83 5.54
1215 9918 0.107945 CCGCCAGGAAGAAGGAGAAG 60.108 60.000 0.00 0.00 41.02 2.85
1216 9919 0.107945 CGCCAGGAAGAAGGAGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
1217 9920 0.393673 GCCAGGAAGAAGGAGAAGGC 60.394 60.000 0.00 0.00 0.00 4.35
1218 9921 0.107945 CCAGGAAGAAGGAGAAGGCG 60.108 60.000 0.00 0.00 0.00 5.52
1219 9922 0.898320 CAGGAAGAAGGAGAAGGCGA 59.102 55.000 0.00 0.00 0.00 5.54
1220 9923 1.276421 CAGGAAGAAGGAGAAGGCGAA 59.724 52.381 0.00 0.00 0.00 4.70
1221 9924 1.552792 AGGAAGAAGGAGAAGGCGAAG 59.447 52.381 0.00 0.00 0.00 3.79
1222 9925 1.406205 GGAAGAAGGAGAAGGCGAAGG 60.406 57.143 0.00 0.00 0.00 3.46
1223 9926 1.550976 GAAGAAGGAGAAGGCGAAGGA 59.449 52.381 0.00 0.00 0.00 3.36
1224 9927 0.899019 AGAAGGAGAAGGCGAAGGAC 59.101 55.000 0.00 0.00 0.00 3.85
1225 9928 0.608640 GAAGGAGAAGGCGAAGGACA 59.391 55.000 0.00 0.00 0.00 4.02
1226 9929 1.002087 GAAGGAGAAGGCGAAGGACAA 59.998 52.381 0.00 0.00 0.00 3.18
1227 9930 0.610687 AGGAGAAGGCGAAGGACAAG 59.389 55.000 0.00 0.00 0.00 3.16
1228 9931 0.391793 GGAGAAGGCGAAGGACAAGG 60.392 60.000 0.00 0.00 0.00 3.61
1229 9932 1.003233 AGAAGGCGAAGGACAAGGC 60.003 57.895 0.00 0.00 0.00 4.35
1251 9963 0.933700 AGGAGAAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
1284 9996 2.729479 CGCCCTCTGCCTGTCTGAT 61.729 63.158 0.00 0.00 36.24 2.90
1290 10002 1.478510 CTCTGCCTGTCTGATTACGGT 59.521 52.381 0.00 0.00 0.00 4.83
1299 10011 0.527817 CTGATTACGGTGAGGGCGAC 60.528 60.000 0.00 0.00 0.00 5.19
1486 10214 0.179056 GCCGTCCCATTAGCTTAGCA 60.179 55.000 7.07 0.00 0.00 3.49
1488 10216 1.134521 CCGTCCCATTAGCTTAGCACA 60.135 52.381 7.07 0.00 0.00 4.57
1490 10218 2.545526 CGTCCCATTAGCTTAGCACATG 59.454 50.000 7.07 7.77 0.00 3.21
1493 10221 3.455910 TCCCATTAGCTTAGCACATGTCT 59.544 43.478 7.07 0.00 0.00 3.41
1495 10223 4.274459 CCCATTAGCTTAGCACATGTCTTC 59.726 45.833 7.07 0.00 0.00 2.87
1499 10227 7.362401 CCATTAGCTTAGCACATGTCTTCTTTT 60.362 37.037 7.07 0.00 0.00 2.27
1500 10228 7.510549 TTAGCTTAGCACATGTCTTCTTTTT 57.489 32.000 7.07 0.00 0.00 1.94
1501 10229 6.006759 AGCTTAGCACATGTCTTCTTTTTC 57.993 37.500 7.07 0.00 0.00 2.29
1502 10230 5.048434 AGCTTAGCACATGTCTTCTTTTTCC 60.048 40.000 7.07 0.00 0.00 3.13
1503 10231 5.278463 GCTTAGCACATGTCTTCTTTTTCCA 60.278 40.000 0.00 0.00 0.00 3.53
1504 10232 4.574599 AGCACATGTCTTCTTTTTCCAC 57.425 40.909 0.00 0.00 0.00 4.02
1505 10233 3.003689 AGCACATGTCTTCTTTTTCCACG 59.996 43.478 0.00 0.00 0.00 4.94
1506 10234 3.003275 GCACATGTCTTCTTTTTCCACGA 59.997 43.478 0.00 0.00 0.00 4.35
1508 10236 3.564225 ACATGTCTTCTTTTTCCACGACC 59.436 43.478 0.00 0.00 0.00 4.79
1512 10240 2.159071 TCTTCTTTTTCCACGACCACGA 60.159 45.455 0.00 0.00 42.66 4.35
1513 10241 2.536761 TCTTTTTCCACGACCACGAT 57.463 45.000 0.00 0.00 42.66 3.73
1521 10249 0.163788 CACGACCACGATTGCTTGTC 59.836 55.000 0.00 0.00 42.66 3.18
1525 10253 0.606401 ACCACGATTGCTTGTCAGGG 60.606 55.000 0.00 0.00 0.00 4.45
1529 10257 1.608590 ACGATTGCTTGTCAGGGTTTG 59.391 47.619 0.00 0.00 0.00 2.93
1530 10258 1.666888 CGATTGCTTGTCAGGGTTTGC 60.667 52.381 0.00 0.00 0.00 3.68
1531 10259 1.340889 GATTGCTTGTCAGGGTTTGCA 59.659 47.619 0.00 0.00 0.00 4.08
1537 10265 3.248363 GCTTGTCAGGGTTTGCATTTTTC 59.752 43.478 0.00 0.00 0.00 2.29
1538 10266 4.696455 CTTGTCAGGGTTTGCATTTTTCT 58.304 39.130 0.00 0.00 0.00 2.52
1540 10276 2.802247 GTCAGGGTTTGCATTTTTCTGC 59.198 45.455 0.00 0.00 42.62 4.26
1546 10282 3.778969 TGCATTTTTCTGCAGAGCG 57.221 47.368 17.43 6.08 46.76 5.03
1547 10283 0.387622 TGCATTTTTCTGCAGAGCGC 60.388 50.000 17.43 15.53 46.76 5.92
1567 10363 0.459489 AGAGACGCTCCAGCATTCTC 59.541 55.000 15.16 15.16 44.23 2.87
1569 10366 0.175302 AGACGCTCCAGCATTCTCTG 59.825 55.000 0.00 0.00 42.21 3.35
1570 10367 0.108424 GACGCTCCAGCATTCTCTGT 60.108 55.000 0.00 0.00 42.21 3.41
1578 10375 2.160417 CCAGCATTCTCTGTTTTCCGTC 59.840 50.000 0.00 0.00 32.32 4.79
1581 10378 1.128692 CATTCTCTGTTTTCCGTCGCC 59.871 52.381 0.00 0.00 0.00 5.54
1593 10391 1.369091 CCGTCGCCTCCAAGGAAATG 61.369 60.000 0.00 0.00 37.67 2.32
1605 10403 6.153340 CCTCCAAGGAAATGTTGTATTGTCAT 59.847 38.462 0.00 0.00 37.67 3.06
1606 10404 7.309990 CCTCCAAGGAAATGTTGTATTGTCATT 60.310 37.037 0.00 0.00 37.67 2.57
1608 10406 7.871973 TCCAAGGAAATGTTGTATTGTCATTTG 59.128 33.333 7.01 0.00 40.38 2.32
1609 10407 7.656948 CCAAGGAAATGTTGTATTGTCATTTGT 59.343 33.333 7.01 0.00 40.38 2.83
1610 10408 8.702438 CAAGGAAATGTTGTATTGTCATTTGTC 58.298 33.333 7.01 1.33 40.38 3.18
1611 10409 7.950512 AGGAAATGTTGTATTGTCATTTGTCA 58.049 30.769 7.01 0.00 40.38 3.58
1612 10410 7.867403 AGGAAATGTTGTATTGTCATTTGTCAC 59.133 33.333 7.01 0.00 40.38 3.67
1613 10411 7.148983 GGAAATGTTGTATTGTCATTTGTCACG 60.149 37.037 7.01 0.00 40.38 4.35
1614 10412 5.743026 TGTTGTATTGTCATTTGTCACGT 57.257 34.783 0.00 0.00 0.00 4.49
1615 10413 6.125327 TGTTGTATTGTCATTTGTCACGTT 57.875 33.333 0.00 0.00 0.00 3.99
1616 10414 7.247929 TGTTGTATTGTCATTTGTCACGTTA 57.752 32.000 0.00 0.00 0.00 3.18
1617 10415 7.348956 TGTTGTATTGTCATTTGTCACGTTAG 58.651 34.615 0.00 0.00 0.00 2.34
1632 10430 8.659925 TGTCACGTTAGTTACCAAGAAAATTA 57.340 30.769 0.00 0.00 0.00 1.40
1662 10460 1.515020 GTTATGCAAATGGGCGCCA 59.485 52.632 30.85 15.30 38.19 5.69
1663 10461 0.805711 GTTATGCAAATGGGCGCCAC 60.806 55.000 30.85 18.39 35.80 5.01
1665 10463 1.042003 TATGCAAATGGGCGCCACAT 61.042 50.000 30.85 24.87 35.80 3.21
1666 10464 1.901654 ATGCAAATGGGCGCCACATT 61.902 50.000 30.85 28.72 40.07 2.71
1667 10465 2.101835 GCAAATGGGCGCCACATTG 61.102 57.895 31.04 27.88 38.47 2.82
1668 10466 1.590665 CAAATGGGCGCCACATTGA 59.409 52.632 31.04 10.89 38.47 2.57
1669 10467 0.458889 CAAATGGGCGCCACATTGAG 60.459 55.000 31.04 24.67 38.47 3.02
1672 10470 2.825836 GGGCGCCACATTGAGGAG 60.826 66.667 30.85 1.74 0.00 3.69
1674 10472 2.401766 GGCGCCACATTGAGGAGTG 61.402 63.158 24.80 0.00 35.56 3.51
1675 10473 1.375908 GCGCCACATTGAGGAGTGA 60.376 57.895 4.11 0.00 37.97 3.41
1677 10475 1.293924 CGCCACATTGAGGAGTGATC 58.706 55.000 4.11 0.00 37.97 2.92
1678 10476 1.134580 CGCCACATTGAGGAGTGATCT 60.135 52.381 4.11 0.00 37.97 2.75
1679 10477 2.286872 GCCACATTGAGGAGTGATCTG 58.713 52.381 4.11 0.00 37.97 2.90
1682 10480 4.778579 CCACATTGAGGAGTGATCTGATT 58.221 43.478 0.00 0.00 37.97 2.57
1683 10481 4.575236 CCACATTGAGGAGTGATCTGATTG 59.425 45.833 0.00 0.00 37.97 2.67
1684 10482 4.575236 CACATTGAGGAGTGATCTGATTGG 59.425 45.833 0.00 0.00 37.97 3.16
1685 10483 4.226846 ACATTGAGGAGTGATCTGATTGGT 59.773 41.667 0.00 0.00 0.00 3.67
1686 10484 3.900966 TGAGGAGTGATCTGATTGGTG 57.099 47.619 0.00 0.00 0.00 4.17
1688 10486 1.211457 AGGAGTGATCTGATTGGTGCC 59.789 52.381 0.00 0.00 0.00 5.01
1689 10487 1.065199 GGAGTGATCTGATTGGTGCCA 60.065 52.381 0.00 0.00 0.00 4.92
1691 10489 2.681848 GAGTGATCTGATTGGTGCCAAG 59.318 50.000 9.65 0.00 39.47 3.61
1693 10532 3.053842 AGTGATCTGATTGGTGCCAAGAT 60.054 43.478 9.65 6.69 39.47 2.40
1700 10539 5.716228 TCTGATTGGTGCCAAGATTTACAAT 59.284 36.000 9.65 0.00 39.47 2.71
1701 10540 5.722263 TGATTGGTGCCAAGATTTACAATG 58.278 37.500 9.65 0.00 39.47 2.82
1704 10543 5.798125 TGGTGCCAAGATTTACAATGAAA 57.202 34.783 0.00 0.00 0.00 2.69
1705 10544 6.166984 TGGTGCCAAGATTTACAATGAAAA 57.833 33.333 0.00 0.00 0.00 2.29
1709 10548 9.382275 GGTGCCAAGATTTACAATGAAAATTAT 57.618 29.630 0.00 0.00 0.00 1.28
1783 10626 5.656859 AGTTTTTCTTGGGTAAGCAAAGACT 59.343 36.000 0.00 0.00 32.18 3.24
1795 10638 1.121967 GCAAAGACTAACACGTCGACG 59.878 52.381 34.58 34.58 46.33 5.12
1796 10639 2.642995 CAAAGACTAACACGTCGACGA 58.357 47.619 41.52 20.21 43.02 4.20
1814 10657 3.660865 ACGACCATCACTAACCAGAAAC 58.339 45.455 0.00 0.00 0.00 2.78
1819 10662 3.502211 CCATCACTAACCAGAAACCACAC 59.498 47.826 0.00 0.00 0.00 3.82
1827 10670 4.222124 ACCAGAAACCACACCTATCATC 57.778 45.455 0.00 0.00 0.00 2.92
1840 10683 6.645827 CACACCTATCATCAATCAGCTTCTAG 59.354 42.308 0.00 0.00 0.00 2.43
1858 10705 1.968540 GGCTGAGAAGTGTGGGCAC 60.969 63.158 0.00 0.00 45.57 5.01
1887 10734 1.668751 TCTTTGCGTGGACTTTGACAC 59.331 47.619 0.00 0.00 0.00 3.67
1899 10746 2.159014 ACTTTGACACGTTCTAGCCACA 60.159 45.455 0.00 0.00 0.00 4.17
1900 10747 2.148916 TTGACACGTTCTAGCCACAG 57.851 50.000 0.00 0.00 0.00 3.66
1901 10748 0.319555 TGACACGTTCTAGCCACAGC 60.320 55.000 0.00 0.00 40.32 4.40
1902 10749 0.319555 GACACGTTCTAGCCACAGCA 60.320 55.000 0.00 0.00 43.56 4.41
1905 10752 1.806542 CACGTTCTAGCCACAGCATTT 59.193 47.619 0.00 0.00 43.56 2.32
1906 10753 2.076863 ACGTTCTAGCCACAGCATTTC 58.923 47.619 0.00 0.00 43.56 2.17
1910 10757 4.508662 GTTCTAGCCACAGCATTTCTAGT 58.491 43.478 0.00 0.00 43.56 2.57
1911 10758 4.392921 TCTAGCCACAGCATTTCTAGTC 57.607 45.455 0.00 0.00 43.56 2.59
1913 10760 1.009829 GCCACAGCATTTCTAGTCCG 58.990 55.000 0.00 0.00 39.53 4.79
1930 10778 4.582869 AGTCCGTCCCTTGTATTTTAACC 58.417 43.478 0.00 0.00 0.00 2.85
1931 10779 3.691118 GTCCGTCCCTTGTATTTTAACCC 59.309 47.826 0.00 0.00 0.00 4.11
1932 10780 3.588396 TCCGTCCCTTGTATTTTAACCCT 59.412 43.478 0.00 0.00 0.00 4.34
1933 10781 4.043184 TCCGTCCCTTGTATTTTAACCCTT 59.957 41.667 0.00 0.00 0.00 3.95
1934 10782 4.397103 CCGTCCCTTGTATTTTAACCCTTC 59.603 45.833 0.00 0.00 0.00 3.46
1935 10783 5.005094 CGTCCCTTGTATTTTAACCCTTCA 58.995 41.667 0.00 0.00 0.00 3.02
1936 10784 5.474189 CGTCCCTTGTATTTTAACCCTTCAA 59.526 40.000 0.00 0.00 0.00 2.69
1937 10785 6.016108 CGTCCCTTGTATTTTAACCCTTCAAA 60.016 38.462 0.00 0.00 0.00 2.69
1938 10786 7.309560 CGTCCCTTGTATTTTAACCCTTCAAAT 60.310 37.037 0.00 0.00 0.00 2.32
1939 10787 8.033038 GTCCCTTGTATTTTAACCCTTCAAATC 58.967 37.037 0.00 0.00 0.00 2.17
1963 10811 4.480166 AGGAGAGAATTCCTTATTTGGCCT 59.520 41.667 3.32 0.00 45.35 5.19
1983 10831 6.825721 TGGCCTTTTCTTAAAATTTGCTTTCA 59.174 30.769 3.32 0.00 0.00 2.69
1993 10841 8.860780 TTAAAATTTGCTTTCATATTTGGCCT 57.139 26.923 3.32 0.00 35.19 5.19
2164 11023 2.616960 TGATTCTTGTACGCGCTTGAT 58.383 42.857 5.73 0.00 0.00 2.57
2165 11024 3.000041 TGATTCTTGTACGCGCTTGATT 59.000 40.909 5.73 0.00 0.00 2.57
2167 11026 4.267690 TGATTCTTGTACGCGCTTGATTAG 59.732 41.667 5.73 0.00 0.00 1.73
2218 11077 0.391793 GAACGCCTTGGCTAGCTTCT 60.392 55.000 15.72 0.00 0.00 2.85
2270 11160 0.647925 GAATCGCACGGCTTTCTCTC 59.352 55.000 0.00 0.00 0.00 3.20
2278 11170 1.688211 GGCTTTCTCTCCCTGCCTT 59.312 57.895 0.00 0.00 40.36 4.35
2280 11172 1.282157 GGCTTTCTCTCCCTGCCTTTA 59.718 52.381 0.00 0.00 40.36 1.85
2298 11197 0.752009 TAGCGAGCATCCGTTCTCCT 60.752 55.000 0.00 0.00 0.00 3.69
2333 11234 2.298158 CTGCCGTCGCTCCCAACTAT 62.298 60.000 0.00 0.00 35.36 2.12
2392 11301 1.749063 AGTATGCGTTCTCGTCATCCA 59.251 47.619 0.00 0.00 39.49 3.41
2393 11302 2.362397 AGTATGCGTTCTCGTCATCCAT 59.638 45.455 0.00 0.00 39.49 3.41
2395 11304 0.246360 TGCGTTCTCGTCATCCATGT 59.754 50.000 0.00 0.00 39.49 3.21
2396 11305 0.924090 GCGTTCTCGTCATCCATGTC 59.076 55.000 0.00 0.00 39.49 3.06
2398 11307 2.455032 CGTTCTCGTCATCCATGTCTC 58.545 52.381 0.00 0.00 0.00 3.36
2399 11308 2.455032 GTTCTCGTCATCCATGTCTCG 58.545 52.381 0.00 0.00 0.00 4.04
2408 11323 2.382746 CCATGTCTCGTGTGCGTGG 61.383 63.158 0.00 8.01 39.49 4.94
2414 11329 1.135603 GTCTCGTGTGCGTGGTGTATA 60.136 52.381 0.00 0.00 39.49 1.47
2431 11346 2.749110 ATAGCTGCCGGTATGCGTCG 62.749 60.000 1.90 0.00 32.87 5.12
2442 11357 3.001228 CGGTATGCGTCGTGTACTACTTA 59.999 47.826 0.00 0.00 0.00 2.24
2443 11358 4.319046 CGGTATGCGTCGTGTACTACTTAT 60.319 45.833 0.00 0.00 0.00 1.73
2444 11359 5.514279 GGTATGCGTCGTGTACTACTTATT 58.486 41.667 0.00 0.00 0.00 1.40
2445 11360 5.973565 GGTATGCGTCGTGTACTACTTATTT 59.026 40.000 0.00 0.00 0.00 1.40
2446 11361 6.141369 GGTATGCGTCGTGTACTACTTATTTC 59.859 42.308 0.00 0.00 0.00 2.17
2447 11362 4.090729 TGCGTCGTGTACTACTTATTTCG 58.909 43.478 0.00 0.00 0.00 3.46
2448 11363 4.142924 TGCGTCGTGTACTACTTATTTCGA 60.143 41.667 0.00 0.00 0.00 3.71
2449 11364 4.432664 GCGTCGTGTACTACTTATTTCGAG 59.567 45.833 0.00 0.00 0.00 4.04
2450 11365 4.960354 CGTCGTGTACTACTTATTTCGAGG 59.040 45.833 0.00 0.00 0.00 4.63
2451 11366 5.220472 CGTCGTGTACTACTTATTTCGAGGA 60.220 44.000 0.00 0.00 35.16 3.71
2452 11367 6.510799 CGTCGTGTACTACTTATTTCGAGGAT 60.511 42.308 0.00 0.00 35.16 3.24
2453 11368 7.192232 GTCGTGTACTACTTATTTCGAGGATT 58.808 38.462 0.00 0.00 0.00 3.01
2454 11369 7.699812 GTCGTGTACTACTTATTTCGAGGATTT 59.300 37.037 0.00 0.00 0.00 2.17
2455 11370 8.892723 TCGTGTACTACTTATTTCGAGGATTTA 58.107 33.333 0.00 0.00 0.00 1.40
2456 11371 9.674824 CGTGTACTACTTATTTCGAGGATTTAT 57.325 33.333 0.00 0.00 0.00 1.40
2461 11376 9.209175 ACTACTTATTTCGAGGATTTATCATGC 57.791 33.333 0.00 0.00 0.00 4.06
2462 11377 7.121974 ACTTATTTCGAGGATTTATCATGCG 57.878 36.000 0.00 0.00 0.00 4.73
2463 11378 6.706270 ACTTATTTCGAGGATTTATCATGCGT 59.294 34.615 0.00 0.00 0.00 5.24
2464 11379 7.870954 ACTTATTTCGAGGATTTATCATGCGTA 59.129 33.333 0.00 0.00 0.00 4.42
2465 11380 8.771920 TTATTTCGAGGATTTATCATGCGTAT 57.228 30.769 0.00 0.00 0.00 3.06
2466 11381 7.672983 ATTTCGAGGATTTATCATGCGTATT 57.327 32.000 0.00 0.00 0.00 1.89
2467 11382 6.466308 TTCGAGGATTTATCATGCGTATTG 57.534 37.500 0.00 0.00 0.00 1.90
2468 11383 5.538118 TCGAGGATTTATCATGCGTATTGT 58.462 37.500 0.00 0.00 0.00 2.71
2469 11384 6.683715 TCGAGGATTTATCATGCGTATTGTA 58.316 36.000 0.00 0.00 0.00 2.41
2470 11385 6.584942 TCGAGGATTTATCATGCGTATTGTAC 59.415 38.462 0.00 0.00 0.00 2.90
2471 11386 6.586463 CGAGGATTTATCATGCGTATTGTACT 59.414 38.462 0.00 0.00 0.00 2.73
2472 11387 7.753580 CGAGGATTTATCATGCGTATTGTACTA 59.246 37.037 0.00 0.00 0.00 1.82
2473 11388 8.758633 AGGATTTATCATGCGTATTGTACTAC 57.241 34.615 0.00 0.00 0.00 2.73
2474 11389 8.585881 AGGATTTATCATGCGTATTGTACTACT 58.414 33.333 0.00 0.00 0.00 2.57
2475 11390 9.850628 GGATTTATCATGCGTATTGTACTACTA 57.149 33.333 0.00 0.00 0.00 1.82
2479 11394 9.888878 TTATCATGCGTATTGTACTACTAGTTC 57.111 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.753438 GTGTACGAATCTCCATGCAAGATTA 59.247 40.000 16.94 4.57 42.17 1.75
4 5 4.122776 GTGTACGAATCTCCATGCAAGAT 58.877 43.478 0.00 0.00 34.96 2.40
6 7 3.261580 TGTGTACGAATCTCCATGCAAG 58.738 45.455 0.00 0.00 0.00 4.01
7 8 3.326836 TGTGTACGAATCTCCATGCAA 57.673 42.857 0.00 0.00 0.00 4.08
8 9 3.326836 TTGTGTACGAATCTCCATGCA 57.673 42.857 0.00 0.00 0.00 3.96
9 10 4.882671 ATTTGTGTACGAATCTCCATGC 57.117 40.909 0.00 0.00 0.00 4.06
11 12 7.687941 AGAAAATTTGTGTACGAATCTCCAT 57.312 32.000 0.00 0.00 0.00 3.41
12 13 7.504924 AAGAAAATTTGTGTACGAATCTCCA 57.495 32.000 0.00 0.00 0.00 3.86
14 15 9.107367 CTGAAAGAAAATTTGTGTACGAATCTC 57.893 33.333 0.00 0.19 34.07 2.75
17 18 9.581099 AAACTGAAAGAAAATTTGTGTACGAAT 57.419 25.926 0.00 0.00 37.43 3.34
18 19 8.973835 AAACTGAAAGAAAATTTGTGTACGAA 57.026 26.923 0.00 0.00 37.43 3.85
32 33 9.396022 AGATGAGTTCTAACAAAACTGAAAGAA 57.604 29.630 0.00 0.00 37.10 2.52
33 34 8.964476 AGATGAGTTCTAACAAAACTGAAAGA 57.036 30.769 0.00 0.00 37.10 2.52
35 36 8.774586 GCTAGATGAGTTCTAACAAAACTGAAA 58.225 33.333 0.00 0.00 37.10 2.69
36 37 8.150945 AGCTAGATGAGTTCTAACAAAACTGAA 58.849 33.333 0.00 0.00 37.10 3.02
39 40 7.671302 TCAGCTAGATGAGTTCTAACAAAACT 58.329 34.615 6.59 0.00 39.61 2.66
40 41 7.891183 TCAGCTAGATGAGTTCTAACAAAAC 57.109 36.000 6.59 0.00 36.50 2.43
53 54 8.972127 AGACATAACTAAAACTCAGCTAGATGA 58.028 33.333 10.81 10.81 0.00 2.92
54 55 9.243637 GAGACATAACTAAAACTCAGCTAGATG 57.756 37.037 0.24 0.24 0.00 2.90
55 56 8.972127 TGAGACATAACTAAAACTCAGCTAGAT 58.028 33.333 0.00 0.00 32.04 1.98
56 57 8.349568 TGAGACATAACTAAAACTCAGCTAGA 57.650 34.615 0.00 0.00 32.04 2.43
59 60 8.097038 TGAATGAGACATAACTAAAACTCAGCT 58.903 33.333 0.00 0.00 37.70 4.24
61 62 9.429359 AGTGAATGAGACATAACTAAAACTCAG 57.571 33.333 0.00 0.00 37.70 3.35
62 63 9.778741 AAGTGAATGAGACATAACTAAAACTCA 57.221 29.630 0.00 0.00 38.44 3.41
70 71 9.331282 GGCTATAAAAGTGAATGAGACATAACT 57.669 33.333 0.00 0.00 0.00 2.24
71 72 9.109393 TGGCTATAAAAGTGAATGAGACATAAC 57.891 33.333 0.00 0.00 0.00 1.89
72 73 9.851686 ATGGCTATAAAAGTGAATGAGACATAA 57.148 29.630 0.00 0.00 29.38 1.90
73 74 9.851686 AATGGCTATAAAAGTGAATGAGACATA 57.148 29.630 0.00 0.00 30.97 2.29
74 75 8.627403 CAATGGCTATAAAAGTGAATGAGACAT 58.373 33.333 0.00 0.00 32.53 3.06
76 77 7.283127 TCCAATGGCTATAAAAGTGAATGAGAC 59.717 37.037 0.00 0.00 0.00 3.36
77 78 7.345691 TCCAATGGCTATAAAAGTGAATGAGA 58.654 34.615 0.00 0.00 0.00 3.27
80 81 7.650504 CACATCCAATGGCTATAAAAGTGAATG 59.349 37.037 0.00 0.00 33.60 2.67
81 82 7.560991 TCACATCCAATGGCTATAAAAGTGAAT 59.439 33.333 0.00 0.00 33.60 2.57
82 83 6.889177 TCACATCCAATGGCTATAAAAGTGAA 59.111 34.615 0.00 0.00 33.60 3.18
83 84 6.422333 TCACATCCAATGGCTATAAAAGTGA 58.578 36.000 0.00 0.00 33.60 3.41
84 85 6.698008 TCACATCCAATGGCTATAAAAGTG 57.302 37.500 0.00 0.00 33.60 3.16
85 86 6.239120 GCATCACATCCAATGGCTATAAAAGT 60.239 38.462 0.00 0.00 33.60 2.66
86 87 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
87 88 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
88 89 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
89 90 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
91 92 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
92 93 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
93 94 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
94 95 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
96 97 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
98 99 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
99 100 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
100 101 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
102 103 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
103 104 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
104 105 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
108 109 3.245518 ACACACACGCATCTTATAGCA 57.754 42.857 0.00 0.00 0.00 3.49
109 110 3.616821 TCAACACACACGCATCTTATAGC 59.383 43.478 0.00 0.00 0.00 2.97
110 111 5.973651 ATCAACACACACGCATCTTATAG 57.026 39.130 0.00 0.00 0.00 1.31
112 113 6.646653 CCTATATCAACACACACGCATCTTAT 59.353 38.462 0.00 0.00 0.00 1.73
113 114 5.983118 CCTATATCAACACACACGCATCTTA 59.017 40.000 0.00 0.00 0.00 2.10
115 116 4.141937 ACCTATATCAACACACACGCATCT 60.142 41.667 0.00 0.00 0.00 2.90
116 117 4.119862 ACCTATATCAACACACACGCATC 58.880 43.478 0.00 0.00 0.00 3.91
117 118 4.137116 ACCTATATCAACACACACGCAT 57.863 40.909 0.00 0.00 0.00 4.73
118 119 3.603158 ACCTATATCAACACACACGCA 57.397 42.857 0.00 0.00 0.00 5.24
120 121 4.250464 ACCAACCTATATCAACACACACG 58.750 43.478 0.00 0.00 0.00 4.49
121 122 6.403878 AGTACCAACCTATATCAACACACAC 58.596 40.000 0.00 0.00 0.00 3.82
122 123 6.351541 GGAGTACCAACCTATATCAACACACA 60.352 42.308 0.00 0.00 35.97 3.72
123 124 6.047231 GGAGTACCAACCTATATCAACACAC 58.953 44.000 0.00 0.00 35.97 3.82
124 125 5.962031 AGGAGTACCAACCTATATCAACACA 59.038 40.000 2.61 0.00 38.94 3.72
126 127 7.504926 AAAGGAGTACCAACCTATATCAACA 57.495 36.000 4.65 0.00 38.94 3.33
128 129 8.607713 TGAAAAAGGAGTACCAACCTATATCAA 58.392 33.333 4.65 0.00 38.94 2.57
130 131 9.274206 GATGAAAAAGGAGTACCAACCTATATC 57.726 37.037 4.65 4.67 38.94 1.63
131 132 9.004231 AGATGAAAAAGGAGTACCAACCTATAT 57.996 33.333 4.65 0.00 38.94 0.86
132 133 8.265055 CAGATGAAAAAGGAGTACCAACCTATA 58.735 37.037 4.65 0.00 38.94 1.31
133 134 7.112779 CAGATGAAAAAGGAGTACCAACCTAT 58.887 38.462 4.65 0.00 38.94 2.57
134 135 6.043938 ACAGATGAAAAAGGAGTACCAACCTA 59.956 38.462 4.65 0.00 38.94 3.08
135 136 5.163088 ACAGATGAAAAAGGAGTACCAACCT 60.163 40.000 0.00 0.00 38.94 3.50
136 137 5.070685 ACAGATGAAAAAGGAGTACCAACC 58.929 41.667 0.00 0.00 38.94 3.77
138 139 6.486657 CAGAACAGATGAAAAAGGAGTACCAA 59.513 38.462 0.00 0.00 38.94 3.67
139 140 5.997746 CAGAACAGATGAAAAAGGAGTACCA 59.002 40.000 0.00 0.00 38.94 3.25
140 141 5.998363 ACAGAACAGATGAAAAAGGAGTACC 59.002 40.000 0.00 0.00 0.00 3.34
141 142 6.931840 AGACAGAACAGATGAAAAAGGAGTAC 59.068 38.462 0.00 0.00 0.00 2.73
142 143 7.067496 AGACAGAACAGATGAAAAAGGAGTA 57.933 36.000 0.00 0.00 0.00 2.59
143 144 5.934781 AGACAGAACAGATGAAAAAGGAGT 58.065 37.500 0.00 0.00 0.00 3.85
145 146 5.765182 GGAAGACAGAACAGATGAAAAAGGA 59.235 40.000 0.00 0.00 0.00 3.36
146 147 5.532406 TGGAAGACAGAACAGATGAAAAAGG 59.468 40.000 0.00 0.00 0.00 3.11
162 163 3.840078 TGATCTCATTCACCTGGAAGACA 59.160 43.478 0.00 0.00 39.30 3.41
164 165 5.503634 TTTGATCTCATTCACCTGGAAGA 57.496 39.130 0.00 0.00 39.30 2.87
165 166 7.870509 TTATTTGATCTCATTCACCTGGAAG 57.129 36.000 0.00 0.00 39.30 3.46
167 168 9.730705 GATATTATTTGATCTCATTCACCTGGA 57.269 33.333 0.00 0.00 0.00 3.86
168 169 9.736414 AGATATTATTTGATCTCATTCACCTGG 57.264 33.333 0.00 0.00 0.00 4.45
196 197 7.363031 TGGGAGTACCTAGAACTCATTTAGAT 58.637 38.462 20.28 0.00 44.25 1.98
197 198 6.738635 TGGGAGTACCTAGAACTCATTTAGA 58.261 40.000 20.28 2.43 44.25 2.10
198 199 7.604657 ATGGGAGTACCTAGAACTCATTTAG 57.395 40.000 20.28 0.00 44.25 1.85
199 200 7.989947 AATGGGAGTACCTAGAACTCATTTA 57.010 36.000 20.28 8.74 44.25 1.40
200 201 6.893020 AATGGGAGTACCTAGAACTCATTT 57.107 37.500 20.28 11.27 44.25 2.32
201 202 6.893020 AAATGGGAGTACCTAGAACTCATT 57.107 37.500 20.28 13.11 44.25 2.57
203 204 6.023603 AGAAAATGGGAGTACCTAGAACTCA 58.976 40.000 20.28 7.79 44.25 3.41
204 205 6.547930 AGAAAATGGGAGTACCTAGAACTC 57.452 41.667 13.84 13.84 42.19 3.01
205 206 6.954352 AAGAAAATGGGAGTACCTAGAACT 57.046 37.500 0.00 0.00 41.11 3.01
206 207 7.997773 AAAAGAAAATGGGAGTACCTAGAAC 57.002 36.000 0.00 0.00 41.11 3.01
207 208 9.734984 CTAAAAAGAAAATGGGAGTACCTAGAA 57.265 33.333 0.00 0.00 41.11 2.10
208 209 8.887393 ACTAAAAAGAAAATGGGAGTACCTAGA 58.113 33.333 0.00 0.00 41.11 2.43
209 210 9.516546 AACTAAAAAGAAAATGGGAGTACCTAG 57.483 33.333 0.00 0.00 41.11 3.02
210 211 9.871175 AAACTAAAAAGAAAATGGGAGTACCTA 57.129 29.630 0.00 0.00 41.11 3.08
211 212 8.777578 AAACTAAAAAGAAAATGGGAGTACCT 57.222 30.769 0.00 0.00 41.11 3.08
289 290 2.034053 GGCTAGGTCTCAGTCGATTGAG 59.966 54.545 27.00 27.00 44.74 3.02
290 291 2.025155 GGCTAGGTCTCAGTCGATTGA 58.975 52.381 10.44 10.44 0.00 2.57
291 292 1.751351 TGGCTAGGTCTCAGTCGATTG 59.249 52.381 0.68 0.68 0.00 2.67
292 293 1.751924 GTGGCTAGGTCTCAGTCGATT 59.248 52.381 0.00 0.00 0.00 3.34
293 294 1.341089 TGTGGCTAGGTCTCAGTCGAT 60.341 52.381 0.00 0.00 0.00 3.59
294 295 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
295 296 0.171455 GTGTGGCTAGGTCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
296 297 0.533032 GGTGTGGCTAGGTCTCAGTC 59.467 60.000 0.00 0.00 0.00 3.51
297 298 1.251527 CGGTGTGGCTAGGTCTCAGT 61.252 60.000 0.00 0.00 0.00 3.41
299 300 0.038599 TACGGTGTGGCTAGGTCTCA 59.961 55.000 0.00 0.00 0.00 3.27
300 301 1.180029 TTACGGTGTGGCTAGGTCTC 58.820 55.000 0.00 0.00 0.00 3.36
301 302 1.755380 GATTACGGTGTGGCTAGGTCT 59.245 52.381 0.00 0.00 0.00 3.85
303 304 1.861982 AGATTACGGTGTGGCTAGGT 58.138 50.000 0.00 0.00 0.00 3.08
304 305 2.981859 AAGATTACGGTGTGGCTAGG 57.018 50.000 0.00 0.00 0.00 3.02
305 306 5.162075 GCTATAAGATTACGGTGTGGCTAG 58.838 45.833 0.00 0.00 0.00 3.42
306 307 4.021719 GGCTATAAGATTACGGTGTGGCTA 60.022 45.833 0.00 0.00 0.00 3.93
307 308 3.244112 GGCTATAAGATTACGGTGTGGCT 60.244 47.826 0.00 0.00 0.00 4.75
308 309 3.064931 GGCTATAAGATTACGGTGTGGC 58.935 50.000 0.00 0.00 0.00 5.01
309 310 3.323979 AGGGCTATAAGATTACGGTGTGG 59.676 47.826 0.00 0.00 0.00 4.17
310 311 4.602340 AGGGCTATAAGATTACGGTGTG 57.398 45.455 0.00 0.00 0.00 3.82
311 312 5.454329 GGAAAGGGCTATAAGATTACGGTGT 60.454 44.000 0.00 0.00 0.00 4.16
312 313 4.995487 GGAAAGGGCTATAAGATTACGGTG 59.005 45.833 0.00 0.00 0.00 4.94
313 314 4.262335 CGGAAAGGGCTATAAGATTACGGT 60.262 45.833 0.00 0.00 0.00 4.83
314 315 4.243270 CGGAAAGGGCTATAAGATTACGG 58.757 47.826 0.00 0.00 0.00 4.02
315 316 4.879598 ACGGAAAGGGCTATAAGATTACG 58.120 43.478 0.00 0.00 0.00 3.18
317 318 6.742559 AAGACGGAAAGGGCTATAAGATTA 57.257 37.500 0.00 0.00 0.00 1.75
318 319 5.632034 AAGACGGAAAGGGCTATAAGATT 57.368 39.130 0.00 0.00 0.00 2.40
319 320 5.632034 AAAGACGGAAAGGGCTATAAGAT 57.368 39.130 0.00 0.00 0.00 2.40
320 321 5.189145 AGAAAAGACGGAAAGGGCTATAAGA 59.811 40.000 0.00 0.00 0.00 2.10
321 322 5.429130 AGAAAAGACGGAAAGGGCTATAAG 58.571 41.667 0.00 0.00 0.00 1.73
322 323 5.189145 AGAGAAAAGACGGAAAGGGCTATAA 59.811 40.000 0.00 0.00 0.00 0.98
323 324 4.715297 AGAGAAAAGACGGAAAGGGCTATA 59.285 41.667 0.00 0.00 0.00 1.31
325 326 2.904434 AGAGAAAAGACGGAAAGGGCTA 59.096 45.455 0.00 0.00 0.00 3.93
326 327 1.700186 AGAGAAAAGACGGAAAGGGCT 59.300 47.619 0.00 0.00 0.00 5.19
327 328 2.186532 AGAGAAAAGACGGAAAGGGC 57.813 50.000 0.00 0.00 0.00 5.19
328 329 4.496360 GAGTAGAGAAAAGACGGAAAGGG 58.504 47.826 0.00 0.00 0.00 3.95
329 330 4.021368 TGGAGTAGAGAAAAGACGGAAAGG 60.021 45.833 0.00 0.00 0.00 3.11
330 331 5.135508 TGGAGTAGAGAAAAGACGGAAAG 57.864 43.478 0.00 0.00 0.00 2.62
331 332 5.245301 TCATGGAGTAGAGAAAAGACGGAAA 59.755 40.000 0.00 0.00 0.00 3.13
332 333 4.770531 TCATGGAGTAGAGAAAAGACGGAA 59.229 41.667 0.00 0.00 0.00 4.30
333 334 4.341487 TCATGGAGTAGAGAAAAGACGGA 58.659 43.478 0.00 0.00 0.00 4.69
334 335 4.440802 CCTCATGGAGTAGAGAAAAGACGG 60.441 50.000 0.00 0.00 33.74 4.79
335 336 4.399618 TCCTCATGGAGTAGAGAAAAGACG 59.600 45.833 0.00 0.00 37.46 4.18
337 338 6.669591 TCAATCCTCATGGAGTAGAGAAAAGA 59.330 38.462 0.00 0.00 46.91 2.52
338 339 6.882656 TCAATCCTCATGGAGTAGAGAAAAG 58.117 40.000 0.00 0.00 46.91 2.27
339 340 6.874278 TCAATCCTCATGGAGTAGAGAAAA 57.126 37.500 0.00 0.00 46.91 2.29
340 341 6.612863 TGATCAATCCTCATGGAGTAGAGAAA 59.387 38.462 0.00 0.00 46.91 2.52
341 342 6.138967 TGATCAATCCTCATGGAGTAGAGAA 58.861 40.000 0.00 0.00 46.91 2.87
345 346 7.937942 AGAAATTGATCAATCCTCATGGAGTAG 59.062 37.037 20.95 0.00 46.91 2.57
346 347 7.809238 AGAAATTGATCAATCCTCATGGAGTA 58.191 34.615 20.95 0.00 46.91 2.59
347 348 6.670617 AGAAATTGATCAATCCTCATGGAGT 58.329 36.000 20.95 0.00 46.91 3.85
348 349 8.865420 ATAGAAATTGATCAATCCTCATGGAG 57.135 34.615 20.95 0.00 46.91 3.86
350 351 7.668469 TGGATAGAAATTGATCAATCCTCATGG 59.332 37.037 20.95 0.00 35.08 3.66
351 352 8.631480 TGGATAGAAATTGATCAATCCTCATG 57.369 34.615 20.95 0.00 35.08 3.07
352 353 9.824216 ATTGGATAGAAATTGATCAATCCTCAT 57.176 29.630 20.95 12.11 35.08 2.90
355 356 9.525826 GGTATTGGATAGAAATTGATCAATCCT 57.474 33.333 20.95 20.55 35.08 3.24
356 357 9.300681 TGGTATTGGATAGAAATTGATCAATCC 57.699 33.333 20.95 17.13 34.69 3.01
363 364 9.473007 TGTGAATTGGTATTGGATAGAAATTGA 57.527 29.630 0.00 0.00 0.00 2.57
364 365 9.520204 GTGTGAATTGGTATTGGATAGAAATTG 57.480 33.333 0.00 0.00 0.00 2.32
365 366 8.695456 GGTGTGAATTGGTATTGGATAGAAATT 58.305 33.333 0.00 0.00 0.00 1.82
366 367 7.287696 GGGTGTGAATTGGTATTGGATAGAAAT 59.712 37.037 0.00 0.00 0.00 2.17
367 368 6.605594 GGGTGTGAATTGGTATTGGATAGAAA 59.394 38.462 0.00 0.00 0.00 2.52
368 369 6.069088 AGGGTGTGAATTGGTATTGGATAGAA 60.069 38.462 0.00 0.00 0.00 2.10
369 370 5.431731 AGGGTGTGAATTGGTATTGGATAGA 59.568 40.000 0.00 0.00 0.00 1.98
371 372 5.725551 AGGGTGTGAATTGGTATTGGATA 57.274 39.130 0.00 0.00 0.00 2.59
372 373 4.608170 AGGGTGTGAATTGGTATTGGAT 57.392 40.909 0.00 0.00 0.00 3.41
373 374 5.522315 TTAGGGTGTGAATTGGTATTGGA 57.478 39.130 0.00 0.00 0.00 3.53
374 375 6.129179 AGATTAGGGTGTGAATTGGTATTGG 58.871 40.000 0.00 0.00 0.00 3.16
375 376 7.645058 AAGATTAGGGTGTGAATTGGTATTG 57.355 36.000 0.00 0.00 0.00 1.90
378 379 8.154856 GCTATAAGATTAGGGTGTGAATTGGTA 58.845 37.037 0.00 0.00 0.00 3.25
379 380 6.998673 GCTATAAGATTAGGGTGTGAATTGGT 59.001 38.462 0.00 0.00 0.00 3.67
381 382 6.431234 GGGCTATAAGATTAGGGTGTGAATTG 59.569 42.308 0.00 0.00 0.00 2.32
382 383 6.332901 AGGGCTATAAGATTAGGGTGTGAATT 59.667 38.462 0.00 0.00 0.00 2.17
383 384 5.852250 AGGGCTATAAGATTAGGGTGTGAAT 59.148 40.000 0.00 0.00 0.00 2.57
385 386 4.593206 CAGGGCTATAAGATTAGGGTGTGA 59.407 45.833 0.00 0.00 0.00 3.58
387 388 3.910627 CCAGGGCTATAAGATTAGGGTGT 59.089 47.826 0.00 0.00 0.00 4.16
388 389 4.020128 GTCCAGGGCTATAAGATTAGGGTG 60.020 50.000 0.00 0.00 0.00 4.61
389 390 4.168883 GTCCAGGGCTATAAGATTAGGGT 58.831 47.826 0.00 0.00 0.00 4.34
390 391 3.195825 CGTCCAGGGCTATAAGATTAGGG 59.804 52.174 0.00 0.00 0.00 3.53
391 392 4.082136 GTCGTCCAGGGCTATAAGATTAGG 60.082 50.000 0.00 0.00 0.00 2.69
392 393 4.767928 AGTCGTCCAGGGCTATAAGATTAG 59.232 45.833 0.00 0.00 0.00 1.73
394 395 3.577919 AGTCGTCCAGGGCTATAAGATT 58.422 45.455 0.00 0.00 0.00 2.40
395 396 3.246416 AGTCGTCCAGGGCTATAAGAT 57.754 47.619 0.00 0.00 0.00 2.40
396 397 2.750141 AGTCGTCCAGGGCTATAAGA 57.250 50.000 0.00 0.00 0.00 2.10
397 398 3.821421 AAAGTCGTCCAGGGCTATAAG 57.179 47.619 0.00 0.00 0.00 1.73
398 399 4.563140 AAAAAGTCGTCCAGGGCTATAA 57.437 40.909 0.00 0.00 0.00 0.98
488 489 8.695456 ACCATTTGTCTTGAGTCAAAGTTTTAT 58.305 29.630 7.06 0.00 36.74 1.40
489 490 8.062065 ACCATTTGTCTTGAGTCAAAGTTTTA 57.938 30.769 7.06 0.00 36.74 1.52
490 491 6.935167 ACCATTTGTCTTGAGTCAAAGTTTT 58.065 32.000 7.06 0.00 36.74 2.43
491 492 6.530019 ACCATTTGTCTTGAGTCAAAGTTT 57.470 33.333 7.06 0.00 36.74 2.66
492 493 6.601613 TGTACCATTTGTCTTGAGTCAAAGTT 59.398 34.615 7.06 0.72 36.74 2.66
493 494 6.119536 TGTACCATTTGTCTTGAGTCAAAGT 58.880 36.000 7.06 5.64 36.74 2.66
496 497 6.119536 ACTTGTACCATTTGTCTTGAGTCAA 58.880 36.000 5.25 5.25 0.00 3.18
497 498 5.680619 ACTTGTACCATTTGTCTTGAGTCA 58.319 37.500 0.00 0.00 0.00 3.41
498 499 6.704493 TGTACTTGTACCATTTGTCTTGAGTC 59.296 38.462 8.25 0.00 0.00 3.36
499 500 6.588204 TGTACTTGTACCATTTGTCTTGAGT 58.412 36.000 8.25 0.00 0.00 3.41
506 507 9.418045 GCAAATAATTGTACTTGTACCATTTGT 57.582 29.630 21.44 10.74 38.85 2.83
508 509 7.757624 CCGCAAATAATTGTACTTGTACCATTT 59.242 33.333 13.08 8.68 38.85 2.32
509 510 7.121463 TCCGCAAATAATTGTACTTGTACCATT 59.879 33.333 12.63 12.63 38.85 3.16
510 511 6.600032 TCCGCAAATAATTGTACTTGTACCAT 59.400 34.615 8.25 0.76 38.85 3.55
511 512 5.938710 TCCGCAAATAATTGTACTTGTACCA 59.061 36.000 8.25 0.00 38.85 3.25
512 513 6.253013 GTCCGCAAATAATTGTACTTGTACC 58.747 40.000 8.25 0.00 38.85 3.34
513 514 5.955496 CGTCCGCAAATAATTGTACTTGTAC 59.045 40.000 4.14 4.14 38.85 2.90
514 515 5.063691 CCGTCCGCAAATAATTGTACTTGTA 59.936 40.000 0.00 0.00 38.85 2.41
515 516 4.142773 CCGTCCGCAAATAATTGTACTTGT 60.143 41.667 0.00 0.00 38.85 3.16
516 517 4.093703 TCCGTCCGCAAATAATTGTACTTG 59.906 41.667 0.00 0.00 38.85 3.16
517 518 4.255301 TCCGTCCGCAAATAATTGTACTT 58.745 39.130 0.00 0.00 38.85 2.24
518 519 3.864243 TCCGTCCGCAAATAATTGTACT 58.136 40.909 0.00 0.00 38.85 2.73
519 520 3.866910 TCTCCGTCCGCAAATAATTGTAC 59.133 43.478 0.00 0.00 38.85 2.90
520 521 4.116961 CTCTCCGTCCGCAAATAATTGTA 58.883 43.478 0.00 0.00 38.85 2.41
521 522 2.936498 CTCTCCGTCCGCAAATAATTGT 59.064 45.455 0.00 0.00 38.85 2.71
522 523 3.194861 TCTCTCCGTCCGCAAATAATTG 58.805 45.455 0.00 0.00 39.65 2.32
523 524 3.118738 ACTCTCTCCGTCCGCAAATAATT 60.119 43.478 0.00 0.00 0.00 1.40
524 525 2.431057 ACTCTCTCCGTCCGCAAATAAT 59.569 45.455 0.00 0.00 0.00 1.28
525 526 1.822990 ACTCTCTCCGTCCGCAAATAA 59.177 47.619 0.00 0.00 0.00 1.40
526 527 1.471119 ACTCTCTCCGTCCGCAAATA 58.529 50.000 0.00 0.00 0.00 1.40
527 528 1.471119 TACTCTCTCCGTCCGCAAAT 58.529 50.000 0.00 0.00 0.00 2.32
528 529 1.134367 CATACTCTCTCCGTCCGCAAA 59.866 52.381 0.00 0.00 0.00 3.68
529 530 0.738975 CATACTCTCTCCGTCCGCAA 59.261 55.000 0.00 0.00 0.00 4.85
530 531 1.101635 CCATACTCTCTCCGTCCGCA 61.102 60.000 0.00 0.00 0.00 5.69
531 532 1.102222 ACCATACTCTCTCCGTCCGC 61.102 60.000 0.00 0.00 0.00 5.54
532 533 1.065701 CAACCATACTCTCTCCGTCCG 59.934 57.143 0.00 0.00 0.00 4.79
533 534 2.376109 TCAACCATACTCTCTCCGTCC 58.624 52.381 0.00 0.00 0.00 4.79
534 535 4.657436 ATTCAACCATACTCTCTCCGTC 57.343 45.455 0.00 0.00 0.00 4.79
535 536 5.422214 AAATTCAACCATACTCTCTCCGT 57.578 39.130 0.00 0.00 0.00 4.69
537 538 9.449719 TTCTTAAAATTCAACCATACTCTCTCC 57.550 33.333 0.00 0.00 0.00 3.71
569 570 6.555315 ACTGTTTGTTCATCAGTTGAGTTTC 58.445 36.000 0.00 0.00 39.00 2.78
573 574 7.166473 GCTAAAACTGTTTGTTCATCAGTTGAG 59.834 37.037 6.53 17.00 46.95 3.02
655 2653 8.695456 CCTTTGCCACTACTAATAAAATGGAAT 58.305 33.333 0.00 0.00 0.00 3.01
657 2655 6.605594 CCCTTTGCCACTACTAATAAAATGGA 59.394 38.462 0.00 0.00 0.00 3.41
658 2656 6.605594 TCCCTTTGCCACTACTAATAAAATGG 59.394 38.462 0.00 0.00 0.00 3.16
670 2671 4.650972 AACTTGTATCCCTTTGCCACTA 57.349 40.909 0.00 0.00 0.00 2.74
719 2727 4.729868 TCTCTCTCCTTTTTCCCCTTTTG 58.270 43.478 0.00 0.00 0.00 2.44
720 2728 5.134509 TCTTCTCTCTCCTTTTTCCCCTTTT 59.865 40.000 0.00 0.00 0.00 2.27
733 2741 5.975693 TGTCTTCTTCTTCTTCTCTCTCC 57.024 43.478 0.00 0.00 0.00 3.71
734 2742 8.087750 TCAATTGTCTTCTTCTTCTTCTCTCTC 58.912 37.037 5.13 0.00 0.00 3.20
735 2743 7.961351 TCAATTGTCTTCTTCTTCTTCTCTCT 58.039 34.615 5.13 0.00 0.00 3.10
736 2744 8.600449 TTCAATTGTCTTCTTCTTCTTCTCTC 57.400 34.615 5.13 0.00 0.00 3.20
737 2745 9.571816 AATTCAATTGTCTTCTTCTTCTTCTCT 57.428 29.630 5.13 0.00 0.00 3.10
965 5506 0.806241 GCCAATGCCAAAAATGCCAG 59.194 50.000 0.00 0.00 0.00 4.85
966 5507 2.944075 GCCAATGCCAAAAATGCCA 58.056 47.368 0.00 0.00 0.00 4.92
1176 9879 1.091197 TCGCCAGCTCGTACGTCATA 61.091 55.000 16.05 0.00 0.00 2.15
1195 9898 0.836400 TTCTCCTTCTTCCTGGCGGT 60.836 55.000 0.00 0.00 0.00 5.68
1215 9918 2.358247 TTCGCCTTGTCCTTCGCC 60.358 61.111 0.00 0.00 0.00 5.54
1216 9919 2.391389 CCTTCGCCTTGTCCTTCGC 61.391 63.158 0.00 0.00 0.00 4.70
1217 9920 0.737715 CTCCTTCGCCTTGTCCTTCG 60.738 60.000 0.00 0.00 0.00 3.79
1218 9921 0.608640 TCTCCTTCGCCTTGTCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
1219 9922 1.002544 CTTCTCCTTCGCCTTGTCCTT 59.997 52.381 0.00 0.00 0.00 3.36
1220 9923 0.610687 CTTCTCCTTCGCCTTGTCCT 59.389 55.000 0.00 0.00 0.00 3.85
1221 9924 0.391793 CCTTCTCCTTCGCCTTGTCC 60.392 60.000 0.00 0.00 0.00 4.02
1222 9925 0.608640 TCCTTCTCCTTCGCCTTGTC 59.391 55.000 0.00 0.00 0.00 3.18
1223 9926 0.610687 CTCCTTCTCCTTCGCCTTGT 59.389 55.000 0.00 0.00 0.00 3.16
1224 9927 0.107945 CCTCCTTCTCCTTCGCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
1225 9928 0.252284 TCCTCCTTCTCCTTCGCCTT 60.252 55.000 0.00 0.00 0.00 4.35
1226 9929 0.686112 CTCCTCCTTCTCCTTCGCCT 60.686 60.000 0.00 0.00 0.00 5.52
1227 9930 1.681486 CCTCCTCCTTCTCCTTCGCC 61.681 65.000 0.00 0.00 0.00 5.54
1228 9931 0.684805 TCCTCCTCCTTCTCCTTCGC 60.685 60.000 0.00 0.00 0.00 4.70
1229 9932 1.398692 CTCCTCCTCCTTCTCCTTCG 58.601 60.000 0.00 0.00 0.00 3.79
1270 9982 1.478510 ACCGTAATCAGACAGGCAGAG 59.521 52.381 0.00 0.00 0.00 3.35
1281 9993 1.514087 GTCGCCCTCACCGTAATCA 59.486 57.895 0.00 0.00 0.00 2.57
1284 9996 4.424566 GCGTCGCCCTCACCGTAA 62.425 66.667 5.75 0.00 0.00 3.18
1358 10070 3.112709 GGAGCCACTTGTCGACGC 61.113 66.667 11.62 7.69 0.00 5.19
1486 10214 3.564225 GGTCGTGGAAAAAGAAGACATGT 59.436 43.478 0.00 0.00 0.00 3.21
1488 10216 3.564225 GTGGTCGTGGAAAAAGAAGACAT 59.436 43.478 0.00 0.00 0.00 3.06
1490 10218 2.033151 CGTGGTCGTGGAAAAAGAAGAC 60.033 50.000 0.00 0.00 0.00 3.01
1493 10221 2.312722 TCGTGGTCGTGGAAAAAGAA 57.687 45.000 0.00 0.00 38.33 2.52
1495 10223 2.916111 CAATCGTGGTCGTGGAAAAAG 58.084 47.619 0.00 0.00 38.33 2.27
1499 10227 0.250124 AAGCAATCGTGGTCGTGGAA 60.250 50.000 0.00 0.00 38.33 3.53
1500 10228 0.948623 CAAGCAATCGTGGTCGTGGA 60.949 55.000 0.00 0.00 38.33 4.02
1501 10229 1.227999 ACAAGCAATCGTGGTCGTGG 61.228 55.000 0.00 0.00 38.33 4.94
1502 10230 0.163788 GACAAGCAATCGTGGTCGTG 59.836 55.000 0.00 0.00 38.33 4.35
1503 10231 0.249699 TGACAAGCAATCGTGGTCGT 60.250 50.000 0.00 0.00 38.33 4.34
1504 10232 0.439985 CTGACAAGCAATCGTGGTCG 59.560 55.000 0.00 0.00 33.24 4.79
1505 10233 0.798776 CCTGACAAGCAATCGTGGTC 59.201 55.000 0.00 0.00 33.24 4.02
1506 10234 0.606401 CCCTGACAAGCAATCGTGGT 60.606 55.000 0.00 0.00 36.94 4.16
1508 10236 1.238439 AACCCTGACAAGCAATCGTG 58.762 50.000 0.00 0.00 0.00 4.35
1512 10240 1.412079 TGCAAACCCTGACAAGCAAT 58.588 45.000 0.00 0.00 0.00 3.56
1513 10241 1.412079 ATGCAAACCCTGACAAGCAA 58.588 45.000 0.00 0.00 35.45 3.91
1529 10257 2.356794 GCGCTCTGCAGAAAAATGC 58.643 52.632 18.85 15.76 46.68 3.56
1546 10282 1.427592 GAATGCTGGAGCGTCTCTGC 61.428 60.000 6.78 10.70 45.83 4.26
1547 10283 0.175302 AGAATGCTGGAGCGTCTCTG 59.825 55.000 6.78 2.81 45.83 3.35
1550 10286 0.175302 CAGAGAATGCTGGAGCGTCT 59.825 55.000 4.73 4.73 45.83 4.18
1551 10287 0.108424 ACAGAGAATGCTGGAGCGTC 60.108 55.000 0.00 0.00 45.83 5.19
1552 10288 0.322975 AACAGAGAATGCTGGAGCGT 59.677 50.000 0.00 0.00 45.83 5.07
1553 10289 1.446907 AAACAGAGAATGCTGGAGCG 58.553 50.000 0.00 0.00 45.83 5.03
1554 10290 2.163211 GGAAAACAGAGAATGCTGGAGC 59.837 50.000 0.00 0.00 40.20 4.70
1555 10291 2.417933 CGGAAAACAGAGAATGCTGGAG 59.582 50.000 0.00 0.00 40.20 3.86
1556 10292 2.224523 ACGGAAAACAGAGAATGCTGGA 60.225 45.455 0.00 0.00 40.20 3.86
1558 10294 2.159787 CGACGGAAAACAGAGAATGCTG 60.160 50.000 0.00 0.00 41.63 4.41
1559 10295 2.069273 CGACGGAAAACAGAGAATGCT 58.931 47.619 0.00 0.00 0.00 3.79
1560 10296 1.464189 GCGACGGAAAACAGAGAATGC 60.464 52.381 0.00 0.00 0.00 3.56
1561 10297 1.128692 GGCGACGGAAAACAGAGAATG 59.871 52.381 0.00 0.00 0.00 2.67
1567 10363 0.882927 TTGGAGGCGACGGAAAACAG 60.883 55.000 0.00 0.00 0.00 3.16
1569 10366 1.574702 CCTTGGAGGCGACGGAAAAC 61.575 60.000 0.00 0.00 0.00 2.43
1570 10367 1.302192 CCTTGGAGGCGACGGAAAA 60.302 57.895 0.00 0.00 0.00 2.29
1578 10375 1.247567 ACAACATTTCCTTGGAGGCG 58.752 50.000 0.00 0.00 34.61 5.52
1581 10378 6.573664 TGACAATACAACATTTCCTTGGAG 57.426 37.500 0.00 0.00 0.00 3.86
1593 10391 7.349711 ACTAACGTGACAAATGACAATACAAC 58.650 34.615 0.00 0.00 0.00 3.32
1605 10403 6.981762 TTTCTTGGTAACTAACGTGACAAA 57.018 33.333 0.00 0.00 37.61 2.83
1606 10404 6.981762 TTTTCTTGGTAACTAACGTGACAA 57.018 33.333 0.00 0.00 37.61 3.18
1608 10406 9.537848 CATAATTTTCTTGGTAACTAACGTGAC 57.462 33.333 0.00 0.00 37.61 3.67
1609 10407 9.275398 ACATAATTTTCTTGGTAACTAACGTGA 57.725 29.630 0.00 0.00 37.61 4.35
1612 10410 9.698617 GCTACATAATTTTCTTGGTAACTAACG 57.301 33.333 0.00 0.00 37.61 3.18
1616 10414 8.234546 CGTTGCTACATAATTTTCTTGGTAACT 58.765 33.333 0.00 0.00 37.61 2.24
1617 10415 7.007995 GCGTTGCTACATAATTTTCTTGGTAAC 59.992 37.037 0.00 0.00 0.00 2.50
1632 10430 1.364721 TGCATAACGCGTTGCTACAT 58.635 45.000 33.40 16.28 46.97 2.29
1636 10434 1.616620 CATTTGCATAACGCGTTGCT 58.383 45.000 33.40 18.08 46.97 3.91
1641 10439 1.938814 CGCCCATTTGCATAACGCG 60.939 57.895 3.53 3.53 46.97 6.01
1662 10460 4.226846 ACCAATCAGATCACTCCTCAATGT 59.773 41.667 0.00 0.00 0.00 2.71
1663 10461 4.575236 CACCAATCAGATCACTCCTCAATG 59.425 45.833 0.00 0.00 0.00 2.82
1665 10463 3.620719 GCACCAATCAGATCACTCCTCAA 60.621 47.826 0.00 0.00 0.00 3.02
1666 10464 2.093288 GCACCAATCAGATCACTCCTCA 60.093 50.000 0.00 0.00 0.00 3.86
1667 10465 2.559440 GCACCAATCAGATCACTCCTC 58.441 52.381 0.00 0.00 0.00 3.71
1668 10466 1.211457 GGCACCAATCAGATCACTCCT 59.789 52.381 0.00 0.00 0.00 3.69
1669 10467 1.065199 TGGCACCAATCAGATCACTCC 60.065 52.381 0.00 0.00 0.00 3.85
1672 10470 2.715046 TCTTGGCACCAATCAGATCAC 58.285 47.619 1.86 0.00 35.20 3.06
1674 10472 4.996788 AAATCTTGGCACCAATCAGATC 57.003 40.909 1.86 0.00 35.20 2.75
1675 10473 5.263599 TGTAAATCTTGGCACCAATCAGAT 58.736 37.500 1.86 0.00 35.20 2.90
1677 10475 5.389859 TTGTAAATCTTGGCACCAATCAG 57.610 39.130 1.86 0.00 35.20 2.90
1678 10476 5.479724 TCATTGTAAATCTTGGCACCAATCA 59.520 36.000 1.86 0.00 35.20 2.57
1679 10477 5.964758 TCATTGTAAATCTTGGCACCAATC 58.035 37.500 1.86 0.00 35.20 2.67
1682 10480 5.798125 TTTCATTGTAAATCTTGGCACCA 57.202 34.783 0.00 0.00 0.00 4.17
1683 10481 7.671495 AATTTTCATTGTAAATCTTGGCACC 57.329 32.000 2.26 0.00 0.00 5.01
1705 10544 9.918630 CTTCTTTTCTGGAACACATCAAATAAT 57.081 29.630 0.00 0.00 0.00 1.28
1709 10548 6.773976 ACTTCTTTTCTGGAACACATCAAA 57.226 33.333 0.00 0.00 0.00 2.69
1714 10553 5.450412 GCATCAACTTCTTTTCTGGAACACA 60.450 40.000 0.00 0.00 0.00 3.72
1718 10557 4.214310 TGGCATCAACTTCTTTTCTGGAA 58.786 39.130 0.00 0.00 0.00 3.53
1721 10560 5.443185 TCTTGGCATCAACTTCTTTTCTG 57.557 39.130 0.00 0.00 0.00 3.02
1728 10571 1.442769 TCGCTCTTGGCATCAACTTC 58.557 50.000 0.00 0.00 41.91 3.01
1748 10591 0.321653 AGAAAAACTCGATGCCGGCT 60.322 50.000 29.70 13.55 36.24 5.52
1749 10592 0.521735 AAGAAAAACTCGATGCCGGC 59.478 50.000 22.73 22.73 36.24 6.13
1751 10594 1.135689 CCCAAGAAAAACTCGATGCCG 60.136 52.381 0.00 0.00 37.07 5.69
1752 10595 1.886542 ACCCAAGAAAAACTCGATGCC 59.113 47.619 0.00 0.00 0.00 4.40
1753 10596 4.723248 CTTACCCAAGAAAAACTCGATGC 58.277 43.478 0.00 0.00 33.20 3.91
1783 10626 0.873721 TGATGGTCGTCGACGTGTTA 59.126 50.000 34.40 20.46 40.80 2.41
1795 10638 3.751698 GTGGTTTCTGGTTAGTGATGGTC 59.248 47.826 0.00 0.00 0.00 4.02
1796 10639 3.137544 TGTGGTTTCTGGTTAGTGATGGT 59.862 43.478 0.00 0.00 0.00 3.55
1814 10657 4.082665 AGCTGATTGATGATAGGTGTGG 57.917 45.455 0.00 0.00 0.00 4.17
1819 10662 5.046448 AGCCTAGAAGCTGATTGATGATAGG 60.046 44.000 0.00 0.00 42.95 2.57
1840 10683 1.968540 GTGCCCACACTTCTCAGCC 60.969 63.158 0.00 0.00 43.85 4.85
1858 10705 1.272490 TCCACGCAAAGACTAGGACTG 59.728 52.381 0.00 0.00 0.00 3.51
1887 10734 2.350522 AGAAATGCTGTGGCTAGAACG 58.649 47.619 0.00 0.00 39.59 3.95
1899 10746 1.867363 AGGGACGGACTAGAAATGCT 58.133 50.000 0.00 0.00 0.00 3.79
1900 10747 2.280628 CAAGGGACGGACTAGAAATGC 58.719 52.381 0.00 0.00 0.00 3.56
1901 10748 3.611766 ACAAGGGACGGACTAGAAATG 57.388 47.619 0.00 0.00 0.00 2.32
1902 10749 5.952347 AATACAAGGGACGGACTAGAAAT 57.048 39.130 0.00 0.00 0.00 2.17
1905 10752 6.351286 GGTTAAAATACAAGGGACGGACTAGA 60.351 42.308 0.00 0.00 0.00 2.43
1906 10753 5.814188 GGTTAAAATACAAGGGACGGACTAG 59.186 44.000 0.00 0.00 0.00 2.57
1910 10757 3.588396 AGGGTTAAAATACAAGGGACGGA 59.412 43.478 0.00 0.00 0.00 4.69
1911 10758 3.959293 AGGGTTAAAATACAAGGGACGG 58.041 45.455 0.00 0.00 0.00 4.79
1913 10760 6.904463 TTGAAGGGTTAAAATACAAGGGAC 57.096 37.500 0.00 0.00 0.00 4.46
1930 10778 5.753716 AGGAATTCTCTCCTGATTTGAAGG 58.246 41.667 5.23 0.00 44.56 3.46
1931 10779 8.977267 ATAAGGAATTCTCTCCTGATTTGAAG 57.023 34.615 5.23 0.00 45.59 3.02
1936 10784 6.548993 GCCAAATAAGGAATTCTCTCCTGATT 59.451 38.462 5.23 0.00 45.40 2.57
1937 10785 6.067350 GCCAAATAAGGAATTCTCTCCTGAT 58.933 40.000 5.23 0.00 45.59 2.90
1938 10786 5.440610 GCCAAATAAGGAATTCTCTCCTGA 58.559 41.667 5.23 0.00 45.59 3.86
1939 10787 4.582240 GGCCAAATAAGGAATTCTCTCCTG 59.418 45.833 5.23 0.00 45.59 3.86
2035 10894 6.873076 GTGCCTAAAATGGATGAAAATGTCAA 59.127 34.615 0.00 0.00 40.50 3.18
2071 10930 2.917933 TGGTCTTTTCACCTCACACTG 58.082 47.619 0.00 0.00 37.34 3.66
2108 10967 2.095516 GTGCTTGTTTGAGGCTAGCTTC 60.096 50.000 19.35 19.35 36.10 3.86
2113 10972 2.158827 TCTGTGTGCTTGTTTGAGGCTA 60.159 45.455 0.00 0.00 0.00 3.93
2164 11023 5.224888 CGTGTGCCACTACTAGAAAACTAA 58.775 41.667 0.00 0.00 31.34 2.24
2165 11024 4.801891 CGTGTGCCACTACTAGAAAACTA 58.198 43.478 0.00 0.00 31.34 2.24
2167 11026 2.157085 GCGTGTGCCACTACTAGAAAAC 59.843 50.000 0.00 0.00 33.98 2.43
2189 11048 0.442310 CAAGGCGTTCACGTGTATGG 59.558 55.000 16.51 3.71 42.22 2.74
2191 11050 1.296056 GCCAAGGCGTTCACGTGTAT 61.296 55.000 16.51 0.00 42.22 2.29
2270 11160 1.153086 ATGCTCGCTAAAGGCAGGG 60.153 57.895 0.00 0.00 41.91 4.45
2278 11170 0.102481 GGAGAACGGATGCTCGCTAA 59.898 55.000 0.00 0.00 31.95 3.09
2280 11172 2.055042 AGGAGAACGGATGCTCGCT 61.055 57.895 0.00 0.00 31.95 4.93
2329 11230 4.508128 CGCACACGGCCCGATAGT 62.508 66.667 11.71 1.88 40.31 2.12
2392 11301 1.664649 CACCACGCACACGAGACAT 60.665 57.895 0.00 0.00 43.93 3.06
2393 11302 1.726533 TACACCACGCACACGAGACA 61.727 55.000 0.00 0.00 43.93 3.41
2395 11304 1.131693 CTATACACCACGCACACGAGA 59.868 52.381 0.00 0.00 43.93 4.04
2396 11305 1.545759 CTATACACCACGCACACGAG 58.454 55.000 0.00 0.00 43.93 4.18
2399 11308 0.999406 CAGCTATACACCACGCACAC 59.001 55.000 0.00 0.00 0.00 3.82
2408 11323 1.429463 GCATACCGGCAGCTATACAC 58.571 55.000 0.00 0.00 0.00 2.90
2442 11357 7.173218 ACAATACGCATGATAAATCCTCGAAAT 59.827 33.333 0.00 0.00 0.00 2.17
2443 11358 6.481976 ACAATACGCATGATAAATCCTCGAAA 59.518 34.615 0.00 0.00 0.00 3.46
2444 11359 5.989168 ACAATACGCATGATAAATCCTCGAA 59.011 36.000 0.00 0.00 0.00 3.71
2445 11360 5.538118 ACAATACGCATGATAAATCCTCGA 58.462 37.500 0.00 0.00 0.00 4.04
2446 11361 5.845985 ACAATACGCATGATAAATCCTCG 57.154 39.130 0.00 0.00 0.00 4.63
2447 11362 7.891183 AGTACAATACGCATGATAAATCCTC 57.109 36.000 0.00 0.00 0.00 3.71
2448 11363 8.585881 AGTAGTACAATACGCATGATAAATCCT 58.414 33.333 2.52 0.00 0.00 3.24
2449 11364 8.758633 AGTAGTACAATACGCATGATAAATCC 57.241 34.615 2.52 0.00 0.00 3.01
2453 11368 9.888878 GAACTAGTAGTACAATACGCATGATAA 57.111 33.333 2.50 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.