Multiple sequence alignment - TraesCS5D01G381600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G381600 chr5D 100.000 7576 0 0 1 7576 451878438 451886013 0.000000e+00 13991.0
1 TraesCS5D01G381600 chr5D 81.492 1059 124 34 891 1921 451791502 451792516 0.000000e+00 804.0
2 TraesCS5D01G381600 chr5D 79.925 533 75 25 5380 5902 451883751 451884261 5.590000e-96 363.0
3 TraesCS5D01G381600 chr5D 79.925 533 75 25 5314 5824 451883817 451884339 5.590000e-96 363.0
4 TraesCS5D01G381600 chr5D 78.618 463 78 12 411 865 451722866 451723315 3.460000e-73 287.0
5 TraesCS5D01G381600 chr5D 92.233 206 11 5 5412 5617 451883816 451884016 3.460000e-73 287.0
6 TraesCS5D01G381600 chr5D 92.233 206 11 5 5379 5579 451883849 451884054 3.460000e-73 287.0
7 TraesCS5D01G381600 chr5D 95.652 69 2 1 2560 2628 451880933 451881000 8.040000e-20 110.0
8 TraesCS5D01G381600 chr5D 95.652 69 2 1 2496 2563 451880997 451881065 8.040000e-20 110.0
9 TraesCS5D01G381600 chr5D 83.333 114 18 1 6691 6804 6918876 6918988 3.740000e-18 104.0
10 TraesCS5D01G381600 chr5B 92.914 2512 114 19 3726 6199 551660770 551663255 0.000000e+00 3594.0
11 TraesCS5D01G381600 chr5B 90.521 2553 158 30 1 2497 551656946 551659470 0.000000e+00 3297.0
12 TraesCS5D01G381600 chr5B 91.696 843 42 15 2850 3677 551659944 551660773 0.000000e+00 1144.0
13 TraesCS5D01G381600 chr5B 89.607 433 22 5 6220 6634 551663319 551663746 5.210000e-146 529.0
14 TraesCS5D01G381600 chr5B 85.472 530 50 14 1422 1933 551520539 551521059 1.870000e-145 527.0
15 TraesCS5D01G381600 chr5B 79.688 512 71 21 5403 5902 551662357 551662847 9.420000e-89 339.0
16 TraesCS5D01G381600 chr5B 76.586 662 124 15 6915 7573 69543716 69544349 1.220000e-87 335.0
17 TraesCS5D01G381600 chr5B 87.031 293 16 5 2560 2852 551659607 551659877 2.050000e-80 311.0
18 TraesCS5D01G381600 chr5B 91.860 172 14 0 5412 5583 551662402 551662573 2.730000e-59 241.0
19 TraesCS5D01G381600 chr5B 84.404 109 13 4 6719 6824 571619808 571619915 3.740000e-18 104.0
20 TraesCS5D01G381600 chr5B 91.667 72 5 1 2493 2563 551659604 551659675 1.740000e-16 99.0
21 TraesCS5D01G381600 chr5B 94.915 59 1 2 3673 3729 280982914 280982856 2.910000e-14 91.6
22 TraesCS5D01G381600 chr5A 94.041 1913 76 15 3726 5625 570715540 570717427 0.000000e+00 2867.0
23 TraesCS5D01G381600 chr5A 89.370 1938 133 39 324 2229 570712287 570714183 0.000000e+00 2370.0
24 TraesCS5D01G381600 chr5A 93.662 1278 54 6 5379 6637 570717218 570718487 0.000000e+00 1886.0
25 TraesCS5D01G381600 chr5A 96.025 956 35 3 2263 3216 570714155 570715109 0.000000e+00 1552.0
26 TraesCS5D01G381600 chr5A 94.268 314 10 6 3367 3677 570715235 570715543 2.470000e-129 473.0
27 TraesCS5D01G381600 chr5A 79.051 506 67 28 5412 5902 570717185 570717666 2.050000e-80 311.0
28 TraesCS5D01G381600 chr5A 77.944 535 85 24 5314 5824 570717219 570717744 3.440000e-78 303.0
29 TraesCS5D01G381600 chr5A 75.680 662 128 14 6915 7576 657101454 657100826 4.440000e-77 300.0
30 TraesCS5D01G381600 chr5A 78.223 349 69 7 7020 7366 543962097 543961754 4.600000e-52 217.0
31 TraesCS5D01G381600 chr5A 92.857 70 4 1 2560 2628 570714388 570714457 4.840000e-17 100.0
32 TraesCS5D01G381600 chr5A 98.214 56 1 0 3673 3728 575688939 575688884 1.740000e-16 99.0
33 TraesCS5D01G381600 chr3D 77.661 667 110 15 6915 7576 312884810 312885442 3.340000e-98 370.0
34 TraesCS5D01G381600 chr3D 93.750 64 3 1 3667 3729 475441996 475441933 2.250000e-15 95.3
35 TraesCS5D01G381600 chr3D 95.000 60 1 2 3671 3729 591356934 591356876 8.090000e-15 93.5
36 TraesCS5D01G381600 chr3B 78.125 608 111 9 6971 7576 680729940 680730527 4.320000e-97 366.0
37 TraesCS5D01G381600 chr3B 91.045 67 4 1 3665 3729 814884444 814884378 1.050000e-13 89.8
38 TraesCS5D01G381600 chr1A 77.120 507 106 9 6915 7414 241378849 241378346 1.240000e-72 285.0
39 TraesCS5D01G381600 chr7A 75.298 672 113 24 6930 7576 186645195 186644552 9.690000e-69 272.0
40 TraesCS5D01G381600 chr7A 78.000 200 42 2 7103 7301 652876178 652875980 2.870000e-24 124.0
41 TraesCS5D01G381600 chr7A 85.859 99 14 0 6706 6804 632869639 632869737 1.040000e-18 106.0
42 TraesCS5D01G381600 chr6A 77.560 459 97 6 6915 7370 225402500 225402045 9.690000e-69 272.0
43 TraesCS5D01G381600 chr6D 76.681 476 103 7 6915 7388 426877869 426878338 2.710000e-64 257.0
44 TraesCS5D01G381600 chr2B 76.410 390 81 8 7009 7391 358066031 358065646 4.640000e-47 200.0
45 TraesCS5D01G381600 chr2B 85.294 102 15 0 6705 6806 257534863 257534762 1.040000e-18 106.0
46 TraesCS5D01G381600 chr7D 73.936 376 59 27 7205 7576 573005904 573006244 1.730000e-21 115.0
47 TraesCS5D01G381600 chr7D 86.735 98 11 2 6708 6804 140326027 140326123 2.890000e-19 108.0
48 TraesCS5D01G381600 chr4A 87.500 96 10 2 6710 6804 121501228 121501322 8.040000e-20 110.0
49 TraesCS5D01G381600 chr4A 83.486 109 14 4 6707 6814 665186505 665186400 1.740000e-16 99.0
50 TraesCS5D01G381600 chr6B 86.139 101 12 2 6705 6804 453266615 453266714 2.890000e-19 108.0
51 TraesCS5D01G381600 chr4D 86.000 100 14 0 6706 6805 31821998 31822097 2.890000e-19 108.0
52 TraesCS5D01G381600 chr4D 100.000 57 0 0 3671 3727 120832561 120832617 1.040000e-18 106.0
53 TraesCS5D01G381600 chr1B 98.182 55 1 0 3674 3728 661577955 661577901 6.260000e-16 97.1
54 TraesCS5D01G381600 chr1B 98.148 54 1 0 3674 3727 27084877 27084824 2.250000e-15 95.3
55 TraesCS5D01G381600 chr2D 90.909 66 2 3 3670 3734 631557413 631557351 1.350000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G381600 chr5D 451878438 451886013 7575 False 13991.000000 13991 100.00000 1 7576 1 chr5D.!!$F4 7575
1 TraesCS5D01G381600 chr5D 451791502 451792516 1014 False 804.000000 804 81.49200 891 1921 1 chr5D.!!$F3 1030
2 TraesCS5D01G381600 chr5D 451880933 451884339 3406 False 253.333333 363 89.27000 2496 5902 6 chr5D.!!$F5 3406
3 TraesCS5D01G381600 chr5B 551656946 551663746 6800 False 1194.250000 3594 89.37300 1 6634 8 chr5B.!!$F4 6633
4 TraesCS5D01G381600 chr5B 551520539 551521059 520 False 527.000000 527 85.47200 1422 1933 1 chr5B.!!$F2 511
5 TraesCS5D01G381600 chr5B 69543716 69544349 633 False 335.000000 335 76.58600 6915 7573 1 chr5B.!!$F1 658
6 TraesCS5D01G381600 chr5A 570712287 570718487 6200 False 1232.750000 2867 89.65225 324 6637 8 chr5A.!!$F1 6313
7 TraesCS5D01G381600 chr5A 657100826 657101454 628 True 300.000000 300 75.68000 6915 7576 1 chr5A.!!$R3 661
8 TraesCS5D01G381600 chr3D 312884810 312885442 632 False 370.000000 370 77.66100 6915 7576 1 chr3D.!!$F1 661
9 TraesCS5D01G381600 chr3B 680729940 680730527 587 False 366.000000 366 78.12500 6971 7576 1 chr3B.!!$F1 605
10 TraesCS5D01G381600 chr1A 241378346 241378849 503 True 285.000000 285 77.12000 6915 7414 1 chr1A.!!$R1 499
11 TraesCS5D01G381600 chr7A 186644552 186645195 643 True 272.000000 272 75.29800 6930 7576 1 chr7A.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 428 0.028770 TGCCAAATATTACGCGCTGC 59.971 50.000 5.73 0.0 0.00 5.25 F
1430 1512 0.531200 AGGGTTTCGGAGCTTAGTCG 59.469 55.000 0.00 0.0 0.00 4.18 F
1860 1961 0.249120 TGGTACATGGTGAAGAGCGG 59.751 55.000 0.00 0.0 0.00 5.52 F
2222 2323 0.327924 TCGGAAACCTGCATCCATGT 59.672 50.000 4.99 0.0 35.34 3.21 F
3673 3951 2.037121 GGTGGCAGCCAGTTAAACAAAT 59.963 45.455 16.83 0.0 32.34 2.32 F
3674 3952 3.257127 GGTGGCAGCCAGTTAAACAAATA 59.743 43.478 16.83 0.0 32.34 1.40 F
3676 3954 4.022329 GTGGCAGCCAGTTAAACAAATACT 60.022 41.667 16.83 0.0 32.34 2.12 F
5905 6299 3.233355 CCGTGGAGGGTGAGAAAAG 57.767 57.895 0.00 0.0 35.97 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 1717 0.111253 AGAAACCACAGGCCAAGGAG 59.889 55.000 5.01 0.00 0.00 3.69 R
2413 2517 0.037734 CCTGACCCCAACCTTACCAC 59.962 60.000 0.00 0.00 0.00 4.16 R
3715 3993 0.702902 TTCTCCAGTACTCCCTCCGT 59.297 55.000 0.00 0.00 0.00 4.69 R
3717 3995 1.414550 GCATTCTCCAGTACTCCCTCC 59.585 57.143 0.00 0.00 0.00 4.30 R
4627 4985 8.213518 ACTGGTAATGCATATTCAAGTGTAAG 57.786 34.615 0.00 0.00 0.00 2.34 R
5905 6299 1.127951 CGACTGCCATACCGTTTTCAC 59.872 52.381 0.00 0.00 0.00 3.18 R
5915 6309 1.831106 ACTGTGGATTCGACTGCCATA 59.169 47.619 5.77 0.99 33.66 2.74 R
7178 7676 0.324460 GGAGAACGGGGAAGAGGAGA 60.324 60.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.782893 TTGTAGGTGTTGAAATTTCCAGG 57.217 39.130 15.48 0.00 0.00 4.45
82 83 2.034687 GAGCTTGGCAAGGGAGCA 59.965 61.111 27.25 0.00 38.85 4.26
84 85 1.664321 GAGCTTGGCAAGGGAGCATG 61.664 60.000 27.25 1.88 38.85 4.06
105 106 1.664873 CATGACGGCAAGCCCAAAA 59.335 52.632 0.00 0.00 0.00 2.44
109 110 0.532115 GACGGCAAGCCCAAAATCAT 59.468 50.000 5.34 0.00 0.00 2.45
136 137 5.560724 AGCAACCAAAGCTCAAGTCTATTA 58.439 37.500 0.00 0.00 38.01 0.98
140 141 7.814587 GCAACCAAAGCTCAAGTCTATTAATTT 59.185 33.333 0.00 0.00 0.00 1.82
143 144 7.669722 ACCAAAGCTCAAGTCTATTAATTTGGA 59.330 33.333 17.15 0.30 44.32 3.53
145 146 9.346725 CAAAGCTCAAGTCTATTAATTTGGAAC 57.653 33.333 0.00 0.00 0.00 3.62
146 147 8.870075 AAGCTCAAGTCTATTAATTTGGAACT 57.130 30.769 0.00 0.00 0.00 3.01
189 190 6.041979 AGACTATGATTGTTTTTGTTTGGGCT 59.958 34.615 0.00 0.00 0.00 5.19
200 201 2.582052 TGTTTGGGCTACAACTTCCAG 58.418 47.619 0.00 0.00 39.19 3.86
203 204 1.378646 GGGCTACAACTTCCAGGGC 60.379 63.158 0.00 0.00 0.00 5.19
207 208 0.036732 CTACAACTTCCAGGGCTGCA 59.963 55.000 0.50 0.00 0.00 4.41
209 210 0.825010 ACAACTTCCAGGGCTGCAAG 60.825 55.000 0.50 0.00 0.00 4.01
244 245 3.131396 ACTTGAAGGAGCAACTGTAACG 58.869 45.455 0.00 0.00 0.00 3.18
255 256 3.448686 CAACTGTAACGGCTAGAGATGG 58.551 50.000 0.00 0.00 0.00 3.51
274 275 1.542547 GGCTGGGAAGTTCGAACTCAA 60.543 52.381 29.82 12.13 38.57 3.02
281 282 2.604046 AGTTCGAACTCAAGTGCAGT 57.396 45.000 24.93 0.00 32.86 4.40
294 295 1.891919 TGCAGTCGTTTGGAGCACC 60.892 57.895 0.00 0.00 0.00 5.01
296 297 2.665185 AGTCGTTTGGAGCACCGC 60.665 61.111 0.00 0.00 39.42 5.68
298 299 2.970324 TCGTTTGGAGCACCGCAC 60.970 61.111 0.00 0.00 39.42 5.34
321 322 3.258123 ACCAGATTTGTAGCCGCAAAAAT 59.742 39.130 7.26 0.00 41.03 1.82
345 363 3.491267 GTCGAATATAACCAGCTCTGTGC 59.509 47.826 0.00 0.00 43.29 4.57
368 386 5.334879 GCATTATCCATTTTACCGGCTACTG 60.335 44.000 0.00 0.00 0.00 2.74
394 412 3.690139 TCTCTAACAAACACGTTTTGCCA 59.310 39.130 17.43 8.84 32.93 4.92
409 428 0.028770 TGCCAAATATTACGCGCTGC 59.971 50.000 5.73 0.00 0.00 5.25
431 450 3.551485 CCGTTGCTTGTTCCTTTGAAAAG 59.449 43.478 0.00 0.00 35.79 2.27
446 469 4.552166 TGAAAAGAAAAAGGCGAGTCTG 57.448 40.909 0.00 0.00 0.00 3.51
531 560 1.151899 CCCCATCCCCGGATAGGAA 60.152 63.158 0.73 0.00 45.00 3.36
606 645 3.499737 CAACGATGACGGGCAGGC 61.500 66.667 0.00 0.00 44.46 4.85
619 658 2.499205 CAGGCCCTTCATCGCGTA 59.501 61.111 5.77 0.00 0.00 4.42
646 685 4.070552 AGAAGCCTGACCCGACGC 62.071 66.667 0.00 0.00 0.00 5.19
662 701 2.939022 GCGACACAACCAGCAGAC 59.061 61.111 0.00 0.00 0.00 3.51
876 917 3.351416 GAACCCGGACGCACCAAC 61.351 66.667 0.73 0.00 38.90 3.77
877 918 4.941309 AACCCGGACGCACCAACC 62.941 66.667 0.73 0.00 38.90 3.77
880 921 4.715523 CCGGACGCACCAACCCAT 62.716 66.667 0.00 0.00 38.90 4.00
882 923 2.750237 GGACGCACCAACCCATCC 60.750 66.667 0.00 0.00 38.79 3.51
885 926 2.438434 CGCACCAACCCATCCTCC 60.438 66.667 0.00 0.00 0.00 4.30
1311 1389 3.230245 CCCGCTCCAGCTCCCTAG 61.230 72.222 0.00 0.00 39.32 3.02
1379 1461 4.467084 GCTTCGATGCGTGGGGGA 62.467 66.667 7.60 0.00 0.00 4.81
1425 1507 1.067071 CGTTCTAGGGTTTCGGAGCTT 60.067 52.381 0.00 0.00 0.00 3.74
1427 1509 3.734293 CGTTCTAGGGTTTCGGAGCTTAG 60.734 52.174 0.00 3.02 36.93 2.18
1430 1512 0.531200 AGGGTTTCGGAGCTTAGTCG 59.469 55.000 0.00 0.00 0.00 4.18
1461 1543 4.602259 CGCTGGTCGTGTGGGTGT 62.602 66.667 0.00 0.00 0.00 4.16
1472 1554 1.152963 GTGGGTGTGCCTGTTGACT 60.153 57.895 0.00 0.00 34.45 3.41
1617 1717 3.428413 TTCCAGGTTAGGGTTTGTAGC 57.572 47.619 0.00 0.00 0.00 3.58
1645 1745 3.586892 GCCTGTGGTTTCTAGTACTGTC 58.413 50.000 5.39 0.00 0.00 3.51
1655 1755 2.030091 TCTAGTACTGTCGCGATTCGTG 59.970 50.000 14.06 13.26 39.67 4.35
1668 1768 3.114065 CGATTCGTGTAGCTAGGGTTTC 58.886 50.000 0.00 0.00 0.00 2.78
1669 1769 3.181489 CGATTCGTGTAGCTAGGGTTTCT 60.181 47.826 0.00 0.00 0.00 2.52
1685 1785 4.236147 GGTTTCTAGTTCACGGTCTCTTC 58.764 47.826 0.00 0.00 0.00 2.87
1716 1816 1.670811 GGATGTACGGCTTTGATGTGG 59.329 52.381 0.00 0.00 0.00 4.17
1736 1836 1.108776 CCCTGGCAGGATTTGTGATG 58.891 55.000 34.84 10.69 37.67 3.07
1742 1842 0.379669 CAGGATTTGTGATGCCGAGC 59.620 55.000 0.00 0.00 0.00 5.03
1815 1916 6.781507 AGGGTTCCGAGTTTTACTATAGCTAT 59.218 38.462 11.77 11.77 0.00 2.97
1860 1961 0.249120 TGGTACATGGTGAAGAGCGG 59.751 55.000 0.00 0.00 0.00 5.52
1862 1963 1.066430 GGTACATGGTGAAGAGCGGAA 60.066 52.381 0.00 0.00 0.00 4.30
1915 2016 5.978919 GTGATGTTTGAGCTTTTGATTCACA 59.021 36.000 10.84 0.00 32.22 3.58
2104 2205 4.709886 GGTTTAACCTGCCATTTCTGGTAT 59.290 41.667 6.92 0.00 38.98 2.73
2195 2296 5.327732 CCACATAAGATGCCCTTAATCCAT 58.672 41.667 0.64 0.00 40.45 3.41
2198 2299 6.006449 ACATAAGATGCCCTTAATCCATGTC 58.994 40.000 0.00 0.00 40.45 3.06
2222 2323 0.327924 TCGGAAACCTGCATCCATGT 59.672 50.000 4.99 0.00 35.34 3.21
2235 2336 4.704540 TGCATCCATGTCCGAGTTAAATTT 59.295 37.500 0.00 0.00 0.00 1.82
2237 2338 5.163663 GCATCCATGTCCGAGTTAAATTTGA 60.164 40.000 0.00 0.00 0.00 2.69
2413 2517 6.479660 AGCTTCACCAAATTAATGTTTGTGTG 59.520 34.615 12.32 12.32 39.23 3.82
2414 2518 6.257630 GCTTCACCAAATTAATGTTTGTGTGT 59.742 34.615 15.27 2.13 39.10 3.72
2415 2519 7.531280 TTCACCAAATTAATGTTTGTGTGTG 57.469 32.000 15.27 10.31 39.10 3.82
3673 3951 2.037121 GGTGGCAGCCAGTTAAACAAAT 59.963 45.455 16.83 0.00 32.34 2.32
3674 3952 3.257127 GGTGGCAGCCAGTTAAACAAATA 59.743 43.478 16.83 0.00 32.34 1.40
3675 3953 4.234574 GTGGCAGCCAGTTAAACAAATAC 58.765 43.478 16.83 0.00 32.34 1.89
3676 3954 4.022329 GTGGCAGCCAGTTAAACAAATACT 60.022 41.667 16.83 0.00 32.34 2.12
3677 3955 4.217550 TGGCAGCCAGTTAAACAAATACTC 59.782 41.667 11.22 0.00 0.00 2.59
3678 3956 4.380550 GGCAGCCAGTTAAACAAATACTCC 60.381 45.833 6.55 0.00 0.00 3.85
3679 3957 4.380550 GCAGCCAGTTAAACAAATACTCCC 60.381 45.833 0.00 0.00 0.00 4.30
3680 3958 5.010282 CAGCCAGTTAAACAAATACTCCCT 58.990 41.667 0.00 0.00 0.00 4.20
3681 3959 5.123979 CAGCCAGTTAAACAAATACTCCCTC 59.876 44.000 0.00 0.00 0.00 4.30
3682 3960 5.014228 AGCCAGTTAAACAAATACTCCCTCT 59.986 40.000 0.00 0.00 0.00 3.69
3683 3961 5.123979 GCCAGTTAAACAAATACTCCCTCTG 59.876 44.000 0.00 0.00 0.00 3.35
3684 3962 6.238648 CCAGTTAAACAAATACTCCCTCTGT 58.761 40.000 0.00 0.00 0.00 3.41
3685 3963 7.391620 CCAGTTAAACAAATACTCCCTCTGTA 58.608 38.462 0.00 0.00 0.00 2.74
3686 3964 7.881232 CCAGTTAAACAAATACTCCCTCTGTAA 59.119 37.037 0.00 0.00 0.00 2.41
3687 3965 9.280174 CAGTTAAACAAATACTCCCTCTGTAAA 57.720 33.333 0.00 0.00 0.00 2.01
3688 3966 9.503399 AGTTAAACAAATACTCCCTCTGTAAAG 57.497 33.333 0.00 0.00 0.00 1.85
3689 3967 9.498176 GTTAAACAAATACTCCCTCTGTAAAGA 57.502 33.333 0.00 0.00 0.00 2.52
3691 3969 8.990163 AAACAAATACTCCCTCTGTAAAGAAA 57.010 30.769 0.00 0.00 0.00 2.52
3692 3970 9.588096 AAACAAATACTCCCTCTGTAAAGAAAT 57.412 29.630 0.00 0.00 0.00 2.17
3700 3978 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3701 3979 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
3702 3980 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
3703 3981 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
3704 3982 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
3719 3997 9.754382 ATAAGAGCGTTTATATTTCTTTACGGA 57.246 29.630 0.00 0.00 31.19 4.69
3720 3998 7.695869 AGAGCGTTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3721 3999 6.700520 AGAGCGTTTATATTTCTTTACGGAGG 59.299 38.462 0.00 0.00 0.00 4.30
3722 4000 5.756833 AGCGTTTATATTTCTTTACGGAGGG 59.243 40.000 0.00 0.00 0.00 4.30
3723 4001 5.754890 GCGTTTATATTTCTTTACGGAGGGA 59.245 40.000 0.00 0.00 0.00 4.20
3724 4002 6.073927 GCGTTTATATTTCTTTACGGAGGGAG 60.074 42.308 0.00 0.00 0.00 4.30
5905 6299 3.233355 CCGTGGAGGGTGAGAAAAG 57.767 57.895 0.00 0.00 35.97 2.27
5915 6309 2.686405 GGGTGAGAAAAGTGAAAACGGT 59.314 45.455 0.00 0.00 0.00 4.83
5916 6310 3.878699 GGGTGAGAAAAGTGAAAACGGTA 59.121 43.478 0.00 0.00 0.00 4.02
6100 6524 1.740296 CCGAAGAACAATCCGCCGT 60.740 57.895 0.00 0.00 0.00 5.68
6141 6565 4.583871 ACAGATTCATCCAGGTGTTTCTC 58.416 43.478 0.00 0.00 0.00 2.87
6220 6667 2.422945 GGGAACAAACCTGGTCTCTGTT 60.423 50.000 17.03 17.03 36.74 3.16
6506 6976 2.871633 GCTTGAACATGTTTTGGGTTGG 59.128 45.455 13.36 0.00 0.00 3.77
6538 7009 6.154706 GGTAGGGTTCAGTTAATCTCTTCTGA 59.845 42.308 0.00 0.00 35.54 3.27
6586 7073 5.179045 AGTTTGTTCTCAGATGTTTGCAG 57.821 39.130 0.00 0.00 0.00 4.41
6599 7086 3.462982 TGTTTGCAGTACATCGTGAGTT 58.537 40.909 0.00 0.00 0.00 3.01
6642 7132 3.720818 GCAACCGCAACCATTTTATTG 57.279 42.857 0.00 0.00 38.36 1.90
6643 7133 3.321497 GCAACCGCAACCATTTTATTGA 58.679 40.909 0.00 0.00 38.36 2.57
6644 7134 3.122780 GCAACCGCAACCATTTTATTGAC 59.877 43.478 0.00 0.00 38.36 3.18
6645 7135 4.302455 CAACCGCAACCATTTTATTGACA 58.698 39.130 0.00 0.00 0.00 3.58
6646 7136 4.592485 ACCGCAACCATTTTATTGACAA 57.408 36.364 0.00 0.00 0.00 3.18
6647 7137 5.146010 ACCGCAACCATTTTATTGACAAT 57.854 34.783 5.87 5.87 0.00 2.71
6648 7138 6.274157 ACCGCAACCATTTTATTGACAATA 57.726 33.333 3.68 3.68 0.00 1.90
6649 7139 6.872920 ACCGCAACCATTTTATTGACAATAT 58.127 32.000 8.69 0.00 0.00 1.28
6650 7140 7.327214 ACCGCAACCATTTTATTGACAATATT 58.673 30.769 8.69 0.00 0.00 1.28
6651 7141 7.821846 ACCGCAACCATTTTATTGACAATATTT 59.178 29.630 8.69 0.00 0.00 1.40
6652 7142 8.663911 CCGCAACCATTTTATTGACAATATTTT 58.336 29.630 8.69 0.00 0.00 1.82
6653 7143 9.475505 CGCAACCATTTTATTGACAATATTTTG 57.524 29.630 8.69 6.72 38.86 2.44
6663 7153 9.554395 TTATTGACAATATTTTGATCCTAGCGA 57.446 29.630 8.69 0.00 36.64 4.93
6664 7154 7.482654 TTGACAATATTTTGATCCTAGCGAG 57.517 36.000 2.69 0.00 36.64 5.03
6665 7155 6.816136 TGACAATATTTTGATCCTAGCGAGA 58.184 36.000 2.69 0.00 36.64 4.04
6666 7156 7.272244 TGACAATATTTTGATCCTAGCGAGAA 58.728 34.615 2.69 0.00 36.64 2.87
6667 7157 7.439356 TGACAATATTTTGATCCTAGCGAGAAG 59.561 37.037 2.69 0.00 36.64 2.85
6668 7158 7.500992 ACAATATTTTGATCCTAGCGAGAAGA 58.499 34.615 2.69 0.00 36.64 2.87
6669 7159 8.153550 ACAATATTTTGATCCTAGCGAGAAGAT 58.846 33.333 2.69 0.00 36.64 2.40
6670 7160 9.645059 CAATATTTTGATCCTAGCGAGAAGATA 57.355 33.333 0.00 0.00 34.60 1.98
6671 7161 9.646427 AATATTTTGATCCTAGCGAGAAGATAC 57.354 33.333 0.00 0.00 0.00 2.24
6672 7162 6.465439 TTTTGATCCTAGCGAGAAGATACA 57.535 37.500 0.00 0.00 0.00 2.29
6673 7163 6.656632 TTTGATCCTAGCGAGAAGATACAT 57.343 37.500 0.00 0.00 0.00 2.29
6674 7164 5.635417 TGATCCTAGCGAGAAGATACATG 57.365 43.478 0.00 0.00 0.00 3.21
6675 7165 5.316987 TGATCCTAGCGAGAAGATACATGA 58.683 41.667 0.00 0.00 0.00 3.07
6676 7166 5.948758 TGATCCTAGCGAGAAGATACATGAT 59.051 40.000 0.00 0.00 0.00 2.45
6677 7167 7.112779 TGATCCTAGCGAGAAGATACATGATA 58.887 38.462 0.00 0.00 0.00 2.15
6678 7168 7.777440 TGATCCTAGCGAGAAGATACATGATAT 59.223 37.037 0.00 0.00 0.00 1.63
6679 7169 7.946381 TCCTAGCGAGAAGATACATGATATT 57.054 36.000 0.00 0.00 0.00 1.28
6680 7170 8.354711 TCCTAGCGAGAAGATACATGATATTT 57.645 34.615 0.00 0.00 0.00 1.40
6681 7171 9.462606 TCCTAGCGAGAAGATACATGATATTTA 57.537 33.333 0.00 0.00 0.00 1.40
6682 7172 9.509855 CCTAGCGAGAAGATACATGATATTTAC 57.490 37.037 0.00 0.00 0.00 2.01
6696 7186 9.450807 ACATGATATTTACTAAAAATTGCGCTC 57.549 29.630 9.73 0.00 0.00 5.03
6697 7187 8.621487 CATGATATTTACTAAAAATTGCGCTCG 58.379 33.333 9.73 0.00 0.00 5.03
6698 7188 6.631238 TGATATTTACTAAAAATTGCGCTCGC 59.369 34.615 9.73 7.38 42.35 5.03
6699 7189 4.413495 TTTACTAAAAATTGCGCTCGCT 57.587 36.364 9.73 0.00 42.51 4.93
6700 7190 5.533533 TTTACTAAAAATTGCGCTCGCTA 57.466 34.783 9.73 8.35 42.51 4.26
6701 7191 5.728351 TTACTAAAAATTGCGCTCGCTAT 57.272 34.783 9.73 10.41 42.51 2.97
6702 7192 6.831727 TTACTAAAAATTGCGCTCGCTATA 57.168 33.333 9.73 1.71 42.51 1.31
6703 7193 5.728351 ACTAAAAATTGCGCTCGCTATAA 57.272 34.783 9.73 2.03 42.51 0.98
6704 7194 6.114221 ACTAAAAATTGCGCTCGCTATAAA 57.886 33.333 9.73 1.67 42.51 1.40
6705 7195 6.548171 ACTAAAAATTGCGCTCGCTATAAAA 58.452 32.000 9.73 1.30 42.51 1.52
6706 7196 7.024768 ACTAAAAATTGCGCTCGCTATAAAAA 58.975 30.769 9.73 0.58 42.51 1.94
6707 7197 6.885735 AAAAATTGCGCTCGCTATAAAAAT 57.114 29.167 9.73 2.96 42.51 1.82
6708 7198 7.979115 AAAAATTGCGCTCGCTATAAAAATA 57.021 28.000 9.73 0.00 42.51 1.40
6709 7199 6.969669 AAATTGCGCTCGCTATAAAAATAC 57.030 33.333 9.73 0.00 42.51 1.89
6710 7200 5.924475 ATTGCGCTCGCTATAAAAATACT 57.076 34.783 9.73 0.00 42.51 2.12
6711 7201 4.966850 TGCGCTCGCTATAAAAATACTC 57.033 40.909 9.73 0.00 42.51 2.59
6712 7202 3.739300 TGCGCTCGCTATAAAAATACTCC 59.261 43.478 9.73 0.00 42.51 3.85
6713 7203 3.988517 GCGCTCGCTATAAAAATACTCCT 59.011 43.478 0.00 0.00 38.26 3.69
6714 7204 4.448060 GCGCTCGCTATAAAAATACTCCTT 59.552 41.667 0.00 0.00 38.26 3.36
6715 7205 5.050295 GCGCTCGCTATAAAAATACTCCTTT 60.050 40.000 0.00 0.00 38.26 3.11
6716 7206 6.582264 CGCTCGCTATAAAAATACTCCTTTC 58.418 40.000 0.00 0.00 0.00 2.62
6717 7207 6.582264 GCTCGCTATAAAAATACTCCTTTCG 58.418 40.000 0.00 0.00 0.00 3.46
6718 7208 6.200475 GCTCGCTATAAAAATACTCCTTTCGT 59.800 38.462 0.00 0.00 0.00 3.85
6719 7209 7.567229 GCTCGCTATAAAAATACTCCTTTCGTC 60.567 40.741 0.00 0.00 0.00 4.20
6720 7210 7.486647 TCGCTATAAAAATACTCCTTTCGTCT 58.513 34.615 0.00 0.00 0.00 4.18
6721 7211 7.646922 TCGCTATAAAAATACTCCTTTCGTCTC 59.353 37.037 0.00 0.00 0.00 3.36
6722 7212 7.434307 CGCTATAAAAATACTCCTTTCGTCTCA 59.566 37.037 0.00 0.00 0.00 3.27
6723 7213 9.095065 GCTATAAAAATACTCCTTTCGTCTCAA 57.905 33.333 0.00 0.00 0.00 3.02
6730 7220 9.503399 AAATACTCCTTTCGTCTCAAAATAAGT 57.497 29.630 0.00 0.00 0.00 2.24
6731 7221 6.787085 ACTCCTTTCGTCTCAAAATAAGTG 57.213 37.500 0.00 0.00 0.00 3.16
6732 7222 5.179555 ACTCCTTTCGTCTCAAAATAAGTGC 59.820 40.000 0.00 0.00 0.00 4.40
6733 7223 5.305585 TCCTTTCGTCTCAAAATAAGTGCT 58.694 37.500 0.00 0.00 0.00 4.40
6734 7224 5.763204 TCCTTTCGTCTCAAAATAAGTGCTT 59.237 36.000 0.00 0.00 0.00 3.91
6735 7225 6.932400 TCCTTTCGTCTCAAAATAAGTGCTTA 59.068 34.615 0.00 0.00 0.00 3.09
6736 7226 7.442969 TCCTTTCGTCTCAAAATAAGTGCTTAA 59.557 33.333 0.00 0.00 0.00 1.85
6737 7227 8.073768 CCTTTCGTCTCAAAATAAGTGCTTAAA 58.926 33.333 0.00 0.00 0.00 1.52
6738 7228 9.107367 CTTTCGTCTCAAAATAAGTGCTTAAAG 57.893 33.333 0.00 0.00 0.00 1.85
6739 7229 7.724305 TCGTCTCAAAATAAGTGCTTAAAGT 57.276 32.000 0.00 0.00 0.00 2.66
6740 7230 8.149973 TCGTCTCAAAATAAGTGCTTAAAGTT 57.850 30.769 0.00 0.00 0.00 2.66
6741 7231 8.617809 TCGTCTCAAAATAAGTGCTTAAAGTTT 58.382 29.630 0.00 0.00 0.00 2.66
6742 7232 9.872757 CGTCTCAAAATAAGTGCTTAAAGTTTA 57.127 29.630 0.00 0.00 0.00 2.01
6795 7285 6.539649 TTTGAGACACTTATTTTGAGACGG 57.460 37.500 0.00 0.00 0.00 4.79
6796 7286 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
6797 7287 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
6798 7288 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
6799 7289 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6800 7290 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6801 7291 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
6802 7292 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
6803 7293 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
6804 7294 5.127356 ACTTATTTTGAGACGGAGGGAGTAG 59.873 44.000 0.00 0.00 0.00 2.57
6805 7295 2.893215 TTTGAGACGGAGGGAGTAGA 57.107 50.000 0.00 0.00 0.00 2.59
6806 7296 2.893215 TTGAGACGGAGGGAGTAGAA 57.107 50.000 0.00 0.00 0.00 2.10
6807 7297 2.421751 TGAGACGGAGGGAGTAGAAG 57.578 55.000 0.00 0.00 0.00 2.85
6808 7298 1.634459 TGAGACGGAGGGAGTAGAAGT 59.366 52.381 0.00 0.00 0.00 3.01
6809 7299 2.041350 TGAGACGGAGGGAGTAGAAGTT 59.959 50.000 0.00 0.00 0.00 2.66
6810 7300 3.090790 GAGACGGAGGGAGTAGAAGTTT 58.909 50.000 0.00 0.00 0.00 2.66
6811 7301 3.508426 AGACGGAGGGAGTAGAAGTTTT 58.492 45.455 0.00 0.00 0.00 2.43
6812 7302 3.902467 AGACGGAGGGAGTAGAAGTTTTT 59.098 43.478 0.00 0.00 0.00 1.94
6813 7303 5.082425 AGACGGAGGGAGTAGAAGTTTTTA 58.918 41.667 0.00 0.00 0.00 1.52
6814 7304 5.720520 AGACGGAGGGAGTAGAAGTTTTTAT 59.279 40.000 0.00 0.00 0.00 1.40
6815 7305 6.212993 AGACGGAGGGAGTAGAAGTTTTTATT 59.787 38.462 0.00 0.00 0.00 1.40
6816 7306 6.776744 ACGGAGGGAGTAGAAGTTTTTATTT 58.223 36.000 0.00 0.00 0.00 1.40
6817 7307 7.229308 ACGGAGGGAGTAGAAGTTTTTATTTT 58.771 34.615 0.00 0.00 0.00 1.82
6818 7308 7.174426 ACGGAGGGAGTAGAAGTTTTTATTTTG 59.826 37.037 0.00 0.00 0.00 2.44
6819 7309 7.389607 CGGAGGGAGTAGAAGTTTTTATTTTGA 59.610 37.037 0.00 0.00 0.00 2.69
6820 7310 9.244292 GGAGGGAGTAGAAGTTTTTATTTTGAT 57.756 33.333 0.00 0.00 0.00 2.57
6831 7321 9.720667 AAGTTTTTATTTTGATTTTTCTGCAGC 57.279 25.926 9.47 0.00 0.00 5.25
6832 7322 8.344831 AGTTTTTATTTTGATTTTTCTGCAGCC 58.655 29.630 9.47 0.00 0.00 4.85
6833 7323 7.798596 TTTTATTTTGATTTTTCTGCAGCCA 57.201 28.000 9.47 0.00 0.00 4.75
6834 7324 7.982761 TTTATTTTGATTTTTCTGCAGCCAT 57.017 28.000 9.47 0.00 0.00 4.40
6835 7325 7.982761 TTATTTTGATTTTTCTGCAGCCATT 57.017 28.000 9.47 0.00 0.00 3.16
6836 7326 9.499479 TTTATTTTGATTTTTCTGCAGCCATTA 57.501 25.926 9.47 0.00 0.00 1.90
6837 7327 9.669887 TTATTTTGATTTTTCTGCAGCCATTAT 57.330 25.926 9.47 0.00 0.00 1.28
6839 7329 9.669887 ATTTTGATTTTTCTGCAGCCATTATAA 57.330 25.926 9.47 0.00 0.00 0.98
6840 7330 8.706492 TTTGATTTTTCTGCAGCCATTATAAG 57.294 30.769 9.47 0.00 0.00 1.73
6841 7331 7.408756 TGATTTTTCTGCAGCCATTATAAGT 57.591 32.000 9.47 0.00 0.00 2.24
6842 7332 7.839907 TGATTTTTCTGCAGCCATTATAAGTT 58.160 30.769 9.47 0.00 0.00 2.66
6843 7333 8.313292 TGATTTTTCTGCAGCCATTATAAGTTT 58.687 29.630 9.47 0.00 0.00 2.66
6844 7334 9.154847 GATTTTTCTGCAGCCATTATAAGTTTT 57.845 29.630 9.47 0.00 0.00 2.43
6845 7335 8.900983 TTTTTCTGCAGCCATTATAAGTTTTT 57.099 26.923 9.47 0.00 0.00 1.94
6863 7353 3.648339 TTTTCTCAAAGCATCTGCACC 57.352 42.857 4.79 0.00 45.16 5.01
6864 7354 2.574006 TTCTCAAAGCATCTGCACCT 57.426 45.000 4.79 0.00 45.16 4.00
6865 7355 1.817357 TCTCAAAGCATCTGCACCTG 58.183 50.000 4.79 0.00 45.16 4.00
6866 7356 1.072806 TCTCAAAGCATCTGCACCTGT 59.927 47.619 4.79 0.00 45.16 4.00
6867 7357 1.467734 CTCAAAGCATCTGCACCTGTC 59.532 52.381 4.79 0.00 45.16 3.51
6868 7358 1.202794 TCAAAGCATCTGCACCTGTCA 60.203 47.619 4.79 0.00 45.16 3.58
6869 7359 1.816835 CAAAGCATCTGCACCTGTCAT 59.183 47.619 4.79 0.00 45.16 3.06
6870 7360 1.460504 AAGCATCTGCACCTGTCATG 58.539 50.000 4.79 0.00 45.16 3.07
6871 7361 0.616891 AGCATCTGCACCTGTCATGA 59.383 50.000 4.79 0.00 45.16 3.07
6872 7362 1.003928 AGCATCTGCACCTGTCATGAA 59.996 47.619 0.00 0.00 45.16 2.57
6873 7363 1.814394 GCATCTGCACCTGTCATGAAA 59.186 47.619 0.00 0.00 41.59 2.69
6874 7364 2.229543 GCATCTGCACCTGTCATGAAAA 59.770 45.455 0.00 0.00 41.59 2.29
6875 7365 3.119245 GCATCTGCACCTGTCATGAAAAT 60.119 43.478 0.00 0.00 41.59 1.82
6876 7366 4.669318 CATCTGCACCTGTCATGAAAATC 58.331 43.478 0.00 0.00 0.00 2.17
6877 7367 3.084039 TCTGCACCTGTCATGAAAATCC 58.916 45.455 0.00 0.00 0.00 3.01
6878 7368 1.811965 TGCACCTGTCATGAAAATCCG 59.188 47.619 0.00 0.00 0.00 4.18
6879 7369 2.083774 GCACCTGTCATGAAAATCCGA 58.916 47.619 0.00 0.00 0.00 4.55
6880 7370 2.159517 GCACCTGTCATGAAAATCCGAC 60.160 50.000 0.00 0.00 0.00 4.79
6881 7371 2.420022 CACCTGTCATGAAAATCCGACC 59.580 50.000 0.00 0.00 0.00 4.79
6882 7372 2.017049 CCTGTCATGAAAATCCGACCC 58.983 52.381 0.00 0.00 0.00 4.46
6883 7373 2.617788 CCTGTCATGAAAATCCGACCCA 60.618 50.000 0.00 0.00 0.00 4.51
6884 7374 2.679837 CTGTCATGAAAATCCGACCCAG 59.320 50.000 0.00 0.00 0.00 4.45
6885 7375 2.304470 TGTCATGAAAATCCGACCCAGA 59.696 45.455 0.00 0.00 0.00 3.86
6886 7376 2.678336 GTCATGAAAATCCGACCCAGAC 59.322 50.000 0.00 0.00 0.00 3.51
6887 7377 1.665679 CATGAAAATCCGACCCAGACG 59.334 52.381 0.00 0.00 0.00 4.18
6898 7388 2.742372 CCAGACGGGCCTCAAACG 60.742 66.667 0.84 0.00 0.00 3.60
6899 7389 3.423154 CAGACGGGCCTCAAACGC 61.423 66.667 0.84 0.00 0.00 4.84
6900 7390 3.626924 AGACGGGCCTCAAACGCT 61.627 61.111 0.84 0.00 0.00 5.07
6901 7391 3.423154 GACGGGCCTCAAACGCTG 61.423 66.667 0.84 0.00 0.00 5.18
6902 7392 3.876589 GACGGGCCTCAAACGCTGA 62.877 63.158 0.84 0.00 0.00 4.26
6903 7393 2.668212 CGGGCCTCAAACGCTGAA 60.668 61.111 0.84 0.00 32.17 3.02
6904 7394 2.954611 GGGCCTCAAACGCTGAAC 59.045 61.111 0.84 0.00 32.17 3.18
6923 7413 1.247419 CGCTCGGGCTCCTCATATCT 61.247 60.000 5.36 0.00 36.09 1.98
6927 7417 1.356059 TCGGGCTCCTCATATCTAGCT 59.644 52.381 0.00 0.00 35.30 3.32
6928 7418 2.175202 CGGGCTCCTCATATCTAGCTT 58.825 52.381 0.00 0.00 35.30 3.74
6940 7431 7.147408 CCTCATATCTAGCTTAAATATGGGGCT 60.147 40.741 20.16 0.35 43.52 5.19
6947 7442 4.952335 AGCTTAAATATGGGGCTGATATGC 59.048 41.667 0.00 0.00 31.68 3.14
6986 7483 4.274978 TGTAATGTAGGACTGACGATGGA 58.725 43.478 0.00 0.00 0.00 3.41
7059 7557 3.047093 CGTCGTTGTAGTGTGAACATCA 58.953 45.455 0.00 0.00 0.00 3.07
7127 7625 4.201679 CGGCCGGCGTGTCTCATA 62.202 66.667 22.54 0.00 0.00 2.15
7144 7642 4.108124 TCTCATACCTAGCCTATCCACCTT 59.892 45.833 0.00 0.00 0.00 3.50
7156 7654 0.787084 TCCACCTTCTCCCTCTCTGT 59.213 55.000 0.00 0.00 0.00 3.41
7164 7662 1.229625 TCCCTCTCTGTGCCACCAT 60.230 57.895 0.00 0.00 0.00 3.55
7175 7673 2.275380 GCCACCATTCAAGCCCGTT 61.275 57.895 0.00 0.00 0.00 4.44
7178 7676 1.072505 ACCATTCAAGCCCGTTCGT 59.927 52.632 0.00 0.00 0.00 3.85
7186 7684 1.186267 AAGCCCGTTCGTCTCCTCTT 61.186 55.000 0.00 0.00 0.00 2.85
7192 7690 1.076192 TTCGTCTCCTCTTCCCCGT 59.924 57.895 0.00 0.00 0.00 5.28
7239 7737 2.505407 TGGTCCGATGAAAGATCACCAT 59.495 45.455 0.00 0.00 38.69 3.55
7245 7743 4.359706 CGATGAAAGATCACCATGTACGA 58.640 43.478 0.00 0.00 38.69 3.43
7291 7790 1.067669 CAGATCGCGAAGGAGATCCAA 59.932 52.381 15.24 0.00 46.83 3.53
7292 7791 1.967066 AGATCGCGAAGGAGATCCAAT 59.033 47.619 15.24 0.00 46.83 3.16
7336 7835 1.079405 CGGGCTGCCTTCGAACTTA 60.079 57.895 19.68 0.00 0.00 2.24
7385 7884 4.548513 CGGAGGAGGAGGAGGGGG 62.549 77.778 0.00 0.00 0.00 5.40
7386 7885 3.036959 GGAGGAGGAGGAGGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
7414 7913 2.133641 GGAGGAGGGAGAGCAGCTC 61.134 68.421 15.25 15.25 43.17 4.09
7479 8001 2.044946 GCCTGCTTCGGGGTTCAT 60.045 61.111 0.00 0.00 0.00 2.57
7486 8008 0.394216 CTTCGGGGTTCATCATGGCA 60.394 55.000 0.00 0.00 0.00 4.92
7520 8042 3.158537 TTCGCAGTCGTCCAAGCCA 62.159 57.895 0.00 0.00 36.96 4.75
7524 8046 3.231736 AGTCGTCCAAGCCACGGT 61.232 61.111 0.00 0.00 37.85 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.790319 ACTGTATAGTTGGACCTGGAAATTT 58.210 36.000 0.00 0.00 31.66 1.82
29 30 4.020485 ACCAAGTGGACTGTATAGTTGGAC 60.020 45.833 25.22 2.47 44.11 4.02
82 83 1.750399 GGCTTGCCGTCATGGACAT 60.750 57.895 0.00 0.00 42.00 3.06
84 85 3.134127 GGGCTTGCCGTCATGGAC 61.134 66.667 5.49 0.00 42.00 4.02
90 91 0.532115 ATGATTTTGGGCTTGCCGTC 59.468 50.000 5.49 0.17 0.00 4.79
93 94 0.903942 TCCATGATTTTGGGCTTGCC 59.096 50.000 2.49 2.49 37.37 4.52
105 106 2.494870 GAGCTTTGGTTGCTTCCATGAT 59.505 45.455 0.00 0.00 41.30 2.45
109 110 1.682854 CTTGAGCTTTGGTTGCTTCCA 59.317 47.619 0.00 0.00 41.30 3.53
140 141 9.524496 TCTAACAACTATACTCAGTTAGTTCCA 57.476 33.333 0.00 0.47 41.29 3.53
169 170 5.923204 TGTAGCCCAAACAAAAACAATCAT 58.077 33.333 0.00 0.00 0.00 2.45
176 177 4.223032 TGGAAGTTGTAGCCCAAACAAAAA 59.777 37.500 0.00 0.00 38.50 1.94
189 190 0.476338 TTGCAGCCCTGGAAGTTGTA 59.524 50.000 0.00 0.00 35.98 2.41
203 204 0.731514 CAAAGATGGCGCACTTGCAG 60.732 55.000 10.83 2.53 42.21 4.41
207 208 1.267806 CAAGTCAAAGATGGCGCACTT 59.732 47.619 10.83 8.87 35.88 3.16
209 210 0.874390 TCAAGTCAAAGATGGCGCAC 59.126 50.000 10.83 0.00 35.88 5.34
214 215 3.415212 TGCTCCTTCAAGTCAAAGATGG 58.585 45.455 0.00 0.00 0.00 3.51
244 245 0.396060 CTTCCCAGCCATCTCTAGCC 59.604 60.000 0.00 0.00 0.00 3.93
255 256 1.801178 CTTGAGTTCGAACTTCCCAGC 59.199 52.381 30.22 17.23 39.88 4.85
274 275 1.146041 TGCTCCAAACGACTGCACT 59.854 52.632 0.00 0.00 0.00 4.40
281 282 2.970324 GTGCGGTGCTCCAAACGA 60.970 61.111 5.52 0.00 0.00 3.85
294 295 0.447801 GGCTACAAATCTGGTGTGCG 59.552 55.000 0.00 0.00 0.00 5.34
296 297 0.447801 GCGGCTACAAATCTGGTGTG 59.552 55.000 0.00 0.00 0.00 3.82
298 299 1.164411 TTGCGGCTACAAATCTGGTG 58.836 50.000 0.00 0.00 0.00 4.17
321 322 3.704566 ACAGAGCTGGTTATATTCGACCA 59.295 43.478 0.00 5.51 43.37 4.02
345 363 5.181245 CCAGTAGCCGGTAAAATGGATAATG 59.819 44.000 12.17 0.00 40.71 1.90
368 386 5.449304 CAAAACGTGTTTGTTAGAGATCCC 58.551 41.667 12.27 0.00 32.36 3.85
394 412 1.011333 AACGGCAGCGCGTAATATTT 58.989 45.000 8.43 0.00 0.00 1.40
409 428 2.861462 TTCAAAGGAACAAGCAACGG 57.139 45.000 0.00 0.00 0.00 4.44
431 450 1.876664 GGCCAGACTCGCCTTTTTC 59.123 57.895 3.50 0.00 43.48 2.29
440 463 1.781786 TGGATACAGAGGCCAGACTC 58.218 55.000 5.01 0.00 46.17 3.36
531 560 2.355920 CGGAGGTAGTAGGTGTGAGAGT 60.356 54.545 0.00 0.00 0.00 3.24
646 685 1.961277 GGGTCTGCTGGTTGTGTCG 60.961 63.158 0.00 0.00 0.00 4.35
866 907 1.745489 GAGGATGGGTTGGTGCGTC 60.745 63.158 0.00 0.00 0.00 5.19
867 908 2.351276 GAGGATGGGTTGGTGCGT 59.649 61.111 0.00 0.00 0.00 5.24
868 909 2.438434 GGAGGATGGGTTGGTGCG 60.438 66.667 0.00 0.00 0.00 5.34
1015 1063 0.184933 TTTGGGATTATGGGGAGCGG 59.815 55.000 0.00 0.00 0.00 5.52
1160 1226 3.694058 CTTCGCTGGCCATGCTCCT 62.694 63.158 20.29 0.00 0.00 3.69
1161 1227 3.207669 CTTCGCTGGCCATGCTCC 61.208 66.667 20.29 2.45 0.00 4.70
1162 1228 3.207669 CCTTCGCTGGCCATGCTC 61.208 66.667 20.29 5.29 0.00 4.26
1323 1401 1.066303 AGCTCGGACGCATCTAAGAAG 59.934 52.381 3.04 0.00 0.00 2.85
1379 1461 1.745489 GAACGCTCGGGCCAGATTT 60.745 57.895 5.89 0.00 34.44 2.17
1425 1507 1.152525 GGGGATCCCAGCTCGACTA 60.153 63.158 32.07 0.00 44.65 2.59
1584 1684 1.078759 CCTGGAAACGTCGCTAGCTG 61.079 60.000 13.93 6.69 0.00 4.24
1617 1717 0.111253 AGAAACCACAGGCCAAGGAG 59.889 55.000 5.01 0.00 0.00 3.69
1655 1755 4.439837 CCGTGAACTAGAAACCCTAGCTAC 60.440 50.000 0.00 0.00 46.98 3.58
1668 1768 2.490115 AGCTGAAGAGACCGTGAACTAG 59.510 50.000 0.00 0.00 0.00 2.57
1669 1769 2.515854 AGCTGAAGAGACCGTGAACTA 58.484 47.619 0.00 0.00 0.00 2.24
1685 1785 2.138320 CCGTACATCCATTGCTAGCTG 58.862 52.381 17.23 6.64 0.00 4.24
1716 1816 0.685458 ATCACAAATCCTGCCAGGGC 60.685 55.000 11.68 2.62 42.35 5.19
1736 1836 0.179084 TAACTGCACATAGGCTCGGC 60.179 55.000 0.00 0.00 34.04 5.54
1742 1842 5.099042 ACCCTAAACTAACTGCACATAGG 57.901 43.478 6.10 0.00 0.00 2.57
1783 1884 4.980339 AAAACTCGGAACCCTAAACCTA 57.020 40.909 0.00 0.00 0.00 3.08
1822 1923 8.354711 TGTACCAAAAGAATGCAATATAACCA 57.645 30.769 0.00 0.00 0.00 3.67
1915 2016 7.778185 AACAAAGGTACTAGTAGACATGACT 57.222 36.000 1.87 0.00 38.49 3.41
2010 2111 4.176271 CAAGACTCATTCACTCGCATGTA 58.824 43.478 0.00 0.00 0.00 2.29
2164 2265 4.141181 AGGGCATCTTATGTGGCATAAGAA 60.141 41.667 25.66 14.84 42.00 2.52
2195 2296 0.672401 GCAGGTTTCCGAATCCGACA 60.672 55.000 3.09 0.00 38.22 4.35
2198 2299 0.657840 GATGCAGGTTTCCGAATCCG 59.342 55.000 0.00 0.82 0.00 4.18
2222 2323 5.556915 AGGACATGTCAAATTTAACTCGGA 58.443 37.500 26.47 0.00 0.00 4.55
2235 2336 0.899720 GGTTCGGGTAGGACATGTCA 59.100 55.000 26.47 4.90 0.00 3.58
2237 2338 1.610554 CGGGTTCGGGTAGGACATGT 61.611 60.000 0.00 0.00 0.00 3.21
2271 2372 2.415090 GCACTTGGACACGTATACGAGT 60.415 50.000 30.77 27.82 45.20 4.18
2388 2490 6.479660 CACACAAACATTAATTTGGTGAAGCT 59.520 34.615 17.54 0.00 42.74 3.74
2413 2517 0.037734 CCTGACCCCAACCTTACCAC 59.962 60.000 0.00 0.00 0.00 4.16
2414 2518 1.137594 CCCTGACCCCAACCTTACCA 61.138 60.000 0.00 0.00 0.00 3.25
2415 2519 0.843343 TCCCTGACCCCAACCTTACC 60.843 60.000 0.00 0.00 0.00 2.85
3674 3952 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
3675 3953 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
3676 3954 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
3677 3955 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
3678 3956 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
3693 3971 9.754382 TCCGTAAAGAAATATAAACGCTCTTAT 57.246 29.630 0.00 0.00 0.00 1.73
3694 3972 9.241317 CTCCGTAAAGAAATATAAACGCTCTTA 57.759 33.333 0.00 0.00 0.00 2.10
3695 3973 7.224167 CCTCCGTAAAGAAATATAAACGCTCTT 59.776 37.037 0.00 0.00 0.00 2.85
3696 3974 6.700520 CCTCCGTAAAGAAATATAAACGCTCT 59.299 38.462 0.00 0.00 0.00 4.09
3697 3975 6.073927 CCCTCCGTAAAGAAATATAAACGCTC 60.074 42.308 0.00 0.00 0.00 5.03
3698 3976 5.756833 CCCTCCGTAAAGAAATATAAACGCT 59.243 40.000 0.00 0.00 0.00 5.07
3699 3977 5.754890 TCCCTCCGTAAAGAAATATAAACGC 59.245 40.000 0.00 0.00 0.00 4.84
3700 3978 6.982724 ACTCCCTCCGTAAAGAAATATAAACG 59.017 38.462 0.00 0.00 0.00 3.60
3701 3979 9.254133 GTACTCCCTCCGTAAAGAAATATAAAC 57.746 37.037 0.00 0.00 0.00 2.01
3702 3980 9.205513 AGTACTCCCTCCGTAAAGAAATATAAA 57.794 33.333 0.00 0.00 0.00 1.40
3703 3981 8.636213 CAGTACTCCCTCCGTAAAGAAATATAA 58.364 37.037 0.00 0.00 0.00 0.98
3704 3982 7.232127 CCAGTACTCCCTCCGTAAAGAAATATA 59.768 40.741 0.00 0.00 0.00 0.86
3705 3983 6.041751 CCAGTACTCCCTCCGTAAAGAAATAT 59.958 42.308 0.00 0.00 0.00 1.28
3706 3984 5.361857 CCAGTACTCCCTCCGTAAAGAAATA 59.638 44.000 0.00 0.00 0.00 1.40
3707 3985 4.161754 CCAGTACTCCCTCCGTAAAGAAAT 59.838 45.833 0.00 0.00 0.00 2.17
3708 3986 3.512724 CCAGTACTCCCTCCGTAAAGAAA 59.487 47.826 0.00 0.00 0.00 2.52
3709 3987 3.094572 CCAGTACTCCCTCCGTAAAGAA 58.905 50.000 0.00 0.00 0.00 2.52
3710 3988 2.309755 TCCAGTACTCCCTCCGTAAAGA 59.690 50.000 0.00 0.00 0.00 2.52
3711 3989 2.688958 CTCCAGTACTCCCTCCGTAAAG 59.311 54.545 0.00 0.00 0.00 1.85
3712 3990 2.309755 TCTCCAGTACTCCCTCCGTAAA 59.690 50.000 0.00 0.00 0.00 2.01
3713 3991 1.918262 TCTCCAGTACTCCCTCCGTAA 59.082 52.381 0.00 0.00 0.00 3.18
3714 3992 1.588239 TCTCCAGTACTCCCTCCGTA 58.412 55.000 0.00 0.00 0.00 4.02
3715 3993 0.702902 TTCTCCAGTACTCCCTCCGT 59.297 55.000 0.00 0.00 0.00 4.69
3716 3994 1.683917 CATTCTCCAGTACTCCCTCCG 59.316 57.143 0.00 0.00 0.00 4.63
3717 3995 1.414550 GCATTCTCCAGTACTCCCTCC 59.585 57.143 0.00 0.00 0.00 4.30
3718 3996 2.393646 AGCATTCTCCAGTACTCCCTC 58.606 52.381 0.00 0.00 0.00 4.30
3719 3997 2.503356 CAAGCATTCTCCAGTACTCCCT 59.497 50.000 0.00 0.00 0.00 4.20
3720 3998 2.501723 TCAAGCATTCTCCAGTACTCCC 59.498 50.000 0.00 0.00 0.00 4.30
3721 3999 3.431486 CCTCAAGCATTCTCCAGTACTCC 60.431 52.174 0.00 0.00 0.00 3.85
3722 4000 3.431486 CCCTCAAGCATTCTCCAGTACTC 60.431 52.174 0.00 0.00 0.00 2.59
3723 4001 2.503356 CCCTCAAGCATTCTCCAGTACT 59.497 50.000 0.00 0.00 0.00 2.73
3724 4002 2.501723 TCCCTCAAGCATTCTCCAGTAC 59.498 50.000 0.00 0.00 0.00 2.73
4627 4985 8.213518 ACTGGTAATGCATATTCAAGTGTAAG 57.786 34.615 0.00 0.00 0.00 2.34
5905 6299 1.127951 CGACTGCCATACCGTTTTCAC 59.872 52.381 0.00 0.00 0.00 3.18
5915 6309 1.831106 ACTGTGGATTCGACTGCCATA 59.169 47.619 5.77 0.99 33.66 2.74
5916 6310 0.615331 ACTGTGGATTCGACTGCCAT 59.385 50.000 5.77 0.00 33.66 4.40
6010 6404 1.203441 AGCATCTGCCTTCACCTCCA 61.203 55.000 0.00 0.00 43.38 3.86
6100 6524 1.862201 GTCCATTGTTGTCGACGTTCA 59.138 47.619 11.62 7.04 0.00 3.18
6141 6565 0.742281 CTTCAGATGCACCTCACGGG 60.742 60.000 0.00 0.00 41.89 5.28
6220 6667 3.002246 CACGCTTACAGTTCTCAAAGCAA 59.998 43.478 5.95 0.00 43.53 3.91
6506 6976 1.569653 ACTGAACCCTACCCAGCTAC 58.430 55.000 0.00 0.00 0.00 3.58
6586 7073 6.308282 CAGGAGTAAGAAAACTCACGATGTAC 59.692 42.308 6.37 0.00 46.40 2.90
6595 7082 5.539048 TGTACTGCAGGAGTAAGAAAACTC 58.461 41.667 19.93 0.00 44.31 3.01
6596 7083 5.542779 CTGTACTGCAGGAGTAAGAAAACT 58.457 41.667 19.93 0.00 38.96 2.66
6637 7127 9.554395 TCGCTAGGATCAAAATATTGTCAATAA 57.446 29.630 9.31 0.00 37.79 1.40
6638 7128 9.208022 CTCGCTAGGATCAAAATATTGTCAATA 57.792 33.333 7.72 7.72 37.79 1.90
6639 7129 7.933577 TCTCGCTAGGATCAAAATATTGTCAAT 59.066 33.333 3.06 3.06 37.79 2.57
6640 7130 7.272244 TCTCGCTAGGATCAAAATATTGTCAA 58.728 34.615 0.00 0.00 37.79 3.18
6641 7131 6.816136 TCTCGCTAGGATCAAAATATTGTCA 58.184 36.000 0.00 0.00 37.79 3.58
6642 7132 7.653713 TCTTCTCGCTAGGATCAAAATATTGTC 59.346 37.037 0.00 0.00 37.79 3.18
6643 7133 7.500992 TCTTCTCGCTAGGATCAAAATATTGT 58.499 34.615 0.00 0.00 37.79 2.71
6644 7134 7.953158 TCTTCTCGCTAGGATCAAAATATTG 57.047 36.000 0.00 0.00 37.92 1.90
6645 7135 9.646427 GTATCTTCTCGCTAGGATCAAAATATT 57.354 33.333 0.00 0.00 0.00 1.28
6646 7136 8.807118 TGTATCTTCTCGCTAGGATCAAAATAT 58.193 33.333 0.00 0.00 0.00 1.28
6647 7137 8.178313 TGTATCTTCTCGCTAGGATCAAAATA 57.822 34.615 0.00 0.00 0.00 1.40
6648 7138 7.055667 TGTATCTTCTCGCTAGGATCAAAAT 57.944 36.000 0.00 0.00 0.00 1.82
6649 7139 6.465439 TGTATCTTCTCGCTAGGATCAAAA 57.535 37.500 0.00 0.00 0.00 2.44
6650 7140 6.265422 TCATGTATCTTCTCGCTAGGATCAAA 59.735 38.462 0.00 0.00 0.00 2.69
6651 7141 5.770162 TCATGTATCTTCTCGCTAGGATCAA 59.230 40.000 0.00 0.00 0.00 2.57
6652 7142 5.316987 TCATGTATCTTCTCGCTAGGATCA 58.683 41.667 0.00 0.00 0.00 2.92
6653 7143 5.888691 TCATGTATCTTCTCGCTAGGATC 57.111 43.478 0.00 0.00 0.00 3.36
6654 7144 8.532186 AATATCATGTATCTTCTCGCTAGGAT 57.468 34.615 0.00 0.00 0.00 3.24
6655 7145 7.946381 AATATCATGTATCTTCTCGCTAGGA 57.054 36.000 0.00 0.00 0.00 2.94
6656 7146 9.509855 GTAAATATCATGTATCTTCTCGCTAGG 57.490 37.037 0.00 0.00 0.00 3.02
6670 7160 9.450807 GAGCGCAATTTTTAGTAAATATCATGT 57.549 29.630 11.47 0.00 0.00 3.21
6671 7161 8.621487 CGAGCGCAATTTTTAGTAAATATCATG 58.379 33.333 11.47 0.00 0.00 3.07
6672 7162 7.323656 GCGAGCGCAATTTTTAGTAAATATCAT 59.676 33.333 11.47 0.00 41.49 2.45
6673 7163 6.631238 GCGAGCGCAATTTTTAGTAAATATCA 59.369 34.615 11.47 0.00 41.49 2.15
6674 7164 6.851330 AGCGAGCGCAATTTTTAGTAAATATC 59.149 34.615 17.68 0.00 44.88 1.63
6675 7165 6.725246 AGCGAGCGCAATTTTTAGTAAATAT 58.275 32.000 17.68 0.00 44.88 1.28
6676 7166 6.114221 AGCGAGCGCAATTTTTAGTAAATA 57.886 33.333 17.68 0.00 44.88 1.40
6677 7167 4.981794 AGCGAGCGCAATTTTTAGTAAAT 58.018 34.783 17.68 0.00 44.88 1.40
6678 7168 4.413495 AGCGAGCGCAATTTTTAGTAAA 57.587 36.364 17.68 0.00 44.88 2.01
6679 7169 5.728351 ATAGCGAGCGCAATTTTTAGTAA 57.272 34.783 17.68 0.00 44.88 2.24
6680 7170 6.831727 TTATAGCGAGCGCAATTTTTAGTA 57.168 33.333 17.68 0.00 44.88 1.82
6681 7171 5.728351 TTATAGCGAGCGCAATTTTTAGT 57.272 34.783 17.68 0.00 44.88 2.24
6682 7172 7.431215 TTTTTATAGCGAGCGCAATTTTTAG 57.569 32.000 17.68 0.00 44.88 1.85
6683 7173 7.979115 ATTTTTATAGCGAGCGCAATTTTTA 57.021 28.000 17.68 0.00 44.88 1.52
6684 7174 6.885735 ATTTTTATAGCGAGCGCAATTTTT 57.114 29.167 17.68 0.00 44.88 1.94
6685 7175 7.193595 AGTATTTTTATAGCGAGCGCAATTTT 58.806 30.769 17.68 0.00 44.88 1.82
6686 7176 6.725246 AGTATTTTTATAGCGAGCGCAATTT 58.275 32.000 17.68 0.00 44.88 1.82
6687 7177 6.300354 AGTATTTTTATAGCGAGCGCAATT 57.700 33.333 17.68 3.76 44.88 2.32
6688 7178 5.107065 GGAGTATTTTTATAGCGAGCGCAAT 60.107 40.000 17.68 9.01 44.88 3.56
6689 7179 4.210537 GGAGTATTTTTATAGCGAGCGCAA 59.789 41.667 17.68 1.61 44.88 4.85
6690 7180 3.739300 GGAGTATTTTTATAGCGAGCGCA 59.261 43.478 17.68 3.67 44.88 6.09
6691 7181 3.988517 AGGAGTATTTTTATAGCGAGCGC 59.011 43.478 6.78 6.78 42.33 5.92
6692 7182 6.526566 AAAGGAGTATTTTTATAGCGAGCG 57.473 37.500 0.00 0.00 0.00 5.03
6693 7183 6.200475 ACGAAAGGAGTATTTTTATAGCGAGC 59.800 38.462 0.00 0.00 0.00 5.03
6694 7184 7.648510 AGACGAAAGGAGTATTTTTATAGCGAG 59.351 37.037 0.00 0.00 0.00 5.03
6695 7185 7.486647 AGACGAAAGGAGTATTTTTATAGCGA 58.513 34.615 0.00 0.00 0.00 4.93
6696 7186 7.434307 TGAGACGAAAGGAGTATTTTTATAGCG 59.566 37.037 0.00 0.00 0.00 4.26
6697 7187 8.644318 TGAGACGAAAGGAGTATTTTTATAGC 57.356 34.615 0.00 0.00 0.00 2.97
6704 7194 9.503399 ACTTATTTTGAGACGAAAGGAGTATTT 57.497 29.630 0.00 0.00 0.00 1.40
6705 7195 8.936864 CACTTATTTTGAGACGAAAGGAGTATT 58.063 33.333 0.00 0.00 0.00 1.89
6706 7196 7.064728 GCACTTATTTTGAGACGAAAGGAGTAT 59.935 37.037 0.00 0.00 0.00 2.12
6707 7197 6.367969 GCACTTATTTTGAGACGAAAGGAGTA 59.632 38.462 0.00 0.00 0.00 2.59
6708 7198 5.179555 GCACTTATTTTGAGACGAAAGGAGT 59.820 40.000 0.00 0.00 0.00 3.85
6709 7199 5.409826 AGCACTTATTTTGAGACGAAAGGAG 59.590 40.000 0.00 0.00 0.00 3.69
6710 7200 5.305585 AGCACTTATTTTGAGACGAAAGGA 58.694 37.500 0.00 0.00 0.00 3.36
6711 7201 5.613358 AGCACTTATTTTGAGACGAAAGG 57.387 39.130 0.00 0.00 0.00 3.11
6712 7202 9.107367 CTTTAAGCACTTATTTTGAGACGAAAG 57.893 33.333 0.00 0.00 0.00 2.62
6713 7203 8.617809 ACTTTAAGCACTTATTTTGAGACGAAA 58.382 29.630 0.00 0.00 0.00 3.46
6714 7204 8.149973 ACTTTAAGCACTTATTTTGAGACGAA 57.850 30.769 0.00 0.00 0.00 3.85
6715 7205 7.724305 ACTTTAAGCACTTATTTTGAGACGA 57.276 32.000 0.00 0.00 0.00 4.20
6716 7206 8.782533 AAACTTTAAGCACTTATTTTGAGACG 57.217 30.769 0.00 0.00 0.00 4.18
6769 7259 8.076178 CCGTCTCAAAATAAGTGTCTCAAATTT 58.924 33.333 0.00 0.00 0.00 1.82
6770 7260 7.444183 TCCGTCTCAAAATAAGTGTCTCAAATT 59.556 33.333 0.00 0.00 0.00 1.82
6771 7261 6.934645 TCCGTCTCAAAATAAGTGTCTCAAAT 59.065 34.615 0.00 0.00 0.00 2.32
6772 7262 6.285224 TCCGTCTCAAAATAAGTGTCTCAAA 58.715 36.000 0.00 0.00 0.00 2.69
6773 7263 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
6774 7264 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
6775 7265 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
6776 7266 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
6777 7267 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
6778 7268 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
6779 7269 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
6780 7270 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
6781 7271 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
6782 7272 5.266788 TCTACTCCCTCCGTCTCAAAATAA 58.733 41.667 0.00 0.00 0.00 1.40
6783 7273 4.863548 TCTACTCCCTCCGTCTCAAAATA 58.136 43.478 0.00 0.00 0.00 1.40
6784 7274 3.709587 TCTACTCCCTCCGTCTCAAAAT 58.290 45.455 0.00 0.00 0.00 1.82
6785 7275 3.165087 TCTACTCCCTCCGTCTCAAAA 57.835 47.619 0.00 0.00 0.00 2.44
6786 7276 2.893215 TCTACTCCCTCCGTCTCAAA 57.107 50.000 0.00 0.00 0.00 2.69
6787 7277 2.041350 ACTTCTACTCCCTCCGTCTCAA 59.959 50.000 0.00 0.00 0.00 3.02
6788 7278 1.634459 ACTTCTACTCCCTCCGTCTCA 59.366 52.381 0.00 0.00 0.00 3.27
6789 7279 2.423446 ACTTCTACTCCCTCCGTCTC 57.577 55.000 0.00 0.00 0.00 3.36
6790 7280 2.903375 AACTTCTACTCCCTCCGTCT 57.097 50.000 0.00 0.00 0.00 4.18
6791 7281 3.957591 AAAACTTCTACTCCCTCCGTC 57.042 47.619 0.00 0.00 0.00 4.79
6792 7282 6.370186 AATAAAAACTTCTACTCCCTCCGT 57.630 37.500 0.00 0.00 0.00 4.69
6793 7283 7.389607 TCAAAATAAAAACTTCTACTCCCTCCG 59.610 37.037 0.00 0.00 0.00 4.63
6794 7284 8.631480 TCAAAATAAAAACTTCTACTCCCTCC 57.369 34.615 0.00 0.00 0.00 4.30
6805 7295 9.720667 GCTGCAGAAAAATCAAAATAAAAACTT 57.279 25.926 20.43 0.00 0.00 2.66
6806 7296 8.344831 GGCTGCAGAAAAATCAAAATAAAAACT 58.655 29.630 20.43 0.00 0.00 2.66
6807 7297 8.127954 TGGCTGCAGAAAAATCAAAATAAAAAC 58.872 29.630 20.43 0.00 0.00 2.43
6808 7298 8.218338 TGGCTGCAGAAAAATCAAAATAAAAA 57.782 26.923 20.43 0.00 0.00 1.94
6809 7299 7.798596 TGGCTGCAGAAAAATCAAAATAAAA 57.201 28.000 20.43 0.00 0.00 1.52
6810 7300 7.982761 ATGGCTGCAGAAAAATCAAAATAAA 57.017 28.000 20.43 0.00 0.00 1.40
6811 7301 7.982761 AATGGCTGCAGAAAAATCAAAATAA 57.017 28.000 20.43 0.00 0.00 1.40
6813 7303 9.669887 TTATAATGGCTGCAGAAAAATCAAAAT 57.330 25.926 20.43 5.83 0.00 1.82
6814 7304 9.153721 CTTATAATGGCTGCAGAAAAATCAAAA 57.846 29.630 20.43 0.00 0.00 2.44
6815 7305 8.313292 ACTTATAATGGCTGCAGAAAAATCAAA 58.687 29.630 20.43 1.13 0.00 2.69
6816 7306 7.839907 ACTTATAATGGCTGCAGAAAAATCAA 58.160 30.769 20.43 2.24 0.00 2.57
6817 7307 7.408756 ACTTATAATGGCTGCAGAAAAATCA 57.591 32.000 20.43 5.39 0.00 2.57
6818 7308 8.707938 AAACTTATAATGGCTGCAGAAAAATC 57.292 30.769 20.43 0.00 0.00 2.17
6819 7309 9.506018 AAAAACTTATAATGGCTGCAGAAAAAT 57.494 25.926 20.43 6.09 0.00 1.82
6820 7310 8.900983 AAAAACTTATAATGGCTGCAGAAAAA 57.099 26.923 20.43 0.00 0.00 1.94
6842 7332 3.638160 AGGTGCAGATGCTTTGAGAAAAA 59.362 39.130 6.35 0.00 42.66 1.94
6843 7333 3.005050 CAGGTGCAGATGCTTTGAGAAAA 59.995 43.478 6.35 0.00 42.66 2.29
6844 7334 2.555325 CAGGTGCAGATGCTTTGAGAAA 59.445 45.455 6.35 0.00 42.66 2.52
6845 7335 2.156917 CAGGTGCAGATGCTTTGAGAA 58.843 47.619 6.35 0.00 42.66 2.87
6846 7336 1.072806 ACAGGTGCAGATGCTTTGAGA 59.927 47.619 6.35 0.00 42.66 3.27
6847 7337 1.467734 GACAGGTGCAGATGCTTTGAG 59.532 52.381 6.35 0.00 42.66 3.02
6848 7338 1.202794 TGACAGGTGCAGATGCTTTGA 60.203 47.619 6.35 0.00 42.66 2.69
6849 7339 1.241165 TGACAGGTGCAGATGCTTTG 58.759 50.000 6.35 4.61 42.66 2.77
6850 7340 1.816835 CATGACAGGTGCAGATGCTTT 59.183 47.619 6.35 0.00 42.66 3.51
6851 7341 1.003928 TCATGACAGGTGCAGATGCTT 59.996 47.619 6.35 0.00 42.66 3.91
6852 7342 0.616891 TCATGACAGGTGCAGATGCT 59.383 50.000 6.35 0.00 42.66 3.79
6853 7343 1.456296 TTCATGACAGGTGCAGATGC 58.544 50.000 0.00 0.00 42.50 3.91
6854 7344 4.439700 GGATTTTCATGACAGGTGCAGATG 60.440 45.833 0.00 0.00 0.00 2.90
6855 7345 3.698040 GGATTTTCATGACAGGTGCAGAT 59.302 43.478 0.00 0.00 0.00 2.90
6856 7346 3.084039 GGATTTTCATGACAGGTGCAGA 58.916 45.455 0.00 0.00 0.00 4.26
6857 7347 2.159476 CGGATTTTCATGACAGGTGCAG 60.159 50.000 0.00 0.00 0.00 4.41
6858 7348 1.811965 CGGATTTTCATGACAGGTGCA 59.188 47.619 0.00 0.00 0.00 4.57
6859 7349 2.083774 TCGGATTTTCATGACAGGTGC 58.916 47.619 0.00 0.00 0.00 5.01
6860 7350 2.420022 GGTCGGATTTTCATGACAGGTG 59.580 50.000 0.00 0.00 33.04 4.00
6861 7351 2.618045 GGGTCGGATTTTCATGACAGGT 60.618 50.000 0.00 0.00 33.04 4.00
6862 7352 2.017049 GGGTCGGATTTTCATGACAGG 58.983 52.381 0.00 0.00 33.04 4.00
6863 7353 2.679837 CTGGGTCGGATTTTCATGACAG 59.320 50.000 0.00 0.00 33.04 3.51
6864 7354 2.304470 TCTGGGTCGGATTTTCATGACA 59.696 45.455 0.00 0.00 33.04 3.58
6865 7355 2.678336 GTCTGGGTCGGATTTTCATGAC 59.322 50.000 0.00 0.00 0.00 3.06
6866 7356 2.676750 CGTCTGGGTCGGATTTTCATGA 60.677 50.000 0.00 0.00 0.00 3.07
6867 7357 1.665679 CGTCTGGGTCGGATTTTCATG 59.334 52.381 0.00 0.00 0.00 3.07
6868 7358 2.024176 CGTCTGGGTCGGATTTTCAT 57.976 50.000 0.00 0.00 0.00 2.57
6869 7359 3.525619 CGTCTGGGTCGGATTTTCA 57.474 52.632 0.00 0.00 0.00 2.69
6881 7371 2.742372 CGTTTGAGGCCCGTCTGG 60.742 66.667 0.00 0.00 37.09 3.86
6882 7372 3.423154 GCGTTTGAGGCCCGTCTG 61.423 66.667 0.00 0.00 0.00 3.51
6883 7373 3.626924 AGCGTTTGAGGCCCGTCT 61.627 61.111 0.00 0.00 0.00 4.18
6884 7374 3.423154 CAGCGTTTGAGGCCCGTC 61.423 66.667 0.00 0.00 0.00 4.79
6885 7375 3.469863 TTCAGCGTTTGAGGCCCGT 62.470 57.895 0.00 0.00 37.07 5.28
6886 7376 2.668212 TTCAGCGTTTGAGGCCCG 60.668 61.111 0.00 0.00 37.07 6.13
6887 7377 2.954611 GTTCAGCGTTTGAGGCCC 59.045 61.111 0.00 0.00 37.07 5.80
6888 7378 2.556287 CGTTCAGCGTTTGAGGCC 59.444 61.111 0.00 0.00 37.07 5.19
6889 7379 2.127232 GCGTTCAGCGTTTGAGGC 60.127 61.111 0.00 0.00 43.66 4.70
6899 7389 3.708220 GAGGAGCCCGAGCGTTCAG 62.708 68.421 0.00 0.00 46.67 3.02
6900 7390 3.760035 GAGGAGCCCGAGCGTTCA 61.760 66.667 0.00 0.00 46.67 3.18
6901 7391 1.735376 TATGAGGAGCCCGAGCGTTC 61.735 60.000 0.00 0.00 46.67 3.95
6902 7392 1.115930 ATATGAGGAGCCCGAGCGTT 61.116 55.000 0.00 0.00 46.67 4.84
6903 7393 1.528292 GATATGAGGAGCCCGAGCGT 61.528 60.000 0.00 0.00 46.67 5.07
6904 7394 1.214062 GATATGAGGAGCCCGAGCG 59.786 63.158 0.00 0.00 46.67 5.03
6905 7395 1.748493 CTAGATATGAGGAGCCCGAGC 59.252 57.143 0.00 0.00 40.32 5.03
6906 7396 1.748493 GCTAGATATGAGGAGCCCGAG 59.252 57.143 0.00 0.00 0.00 4.63
6907 7397 1.356059 AGCTAGATATGAGGAGCCCGA 59.644 52.381 0.00 0.00 35.45 5.14
6908 7398 1.846007 AGCTAGATATGAGGAGCCCG 58.154 55.000 0.00 0.00 35.45 6.13
6909 7399 5.746990 TTTAAGCTAGATATGAGGAGCCC 57.253 43.478 0.00 0.00 35.45 5.19
6910 7400 7.930865 CCATATTTAAGCTAGATATGAGGAGCC 59.069 40.741 18.34 0.00 36.37 4.70
6911 7401 7.930865 CCCATATTTAAGCTAGATATGAGGAGC 59.069 40.741 18.34 0.00 36.37 4.70
6912 7402 8.428063 CCCCATATTTAAGCTAGATATGAGGAG 58.572 40.741 18.34 11.26 35.06 3.69
6913 7403 7.147479 GCCCCATATTTAAGCTAGATATGAGGA 60.147 40.741 19.69 0.00 35.06 3.71
6923 7413 6.122277 GCATATCAGCCCCATATTTAAGCTA 58.878 40.000 0.00 0.00 31.23 3.32
6927 7417 4.269183 CCGCATATCAGCCCCATATTTAA 58.731 43.478 0.00 0.00 0.00 1.52
6928 7418 3.884895 CCGCATATCAGCCCCATATTTA 58.115 45.455 0.00 0.00 0.00 1.40
6940 7431 4.624364 CCAGGGCGCCGCATATCA 62.624 66.667 22.54 0.00 0.00 2.15
6963 7460 4.707934 TCCATCGTCAGTCCTACATTACAA 59.292 41.667 0.00 0.00 0.00 2.41
6966 7463 4.533815 ACTCCATCGTCAGTCCTACATTA 58.466 43.478 0.00 0.00 0.00 1.90
6967 7464 3.366396 ACTCCATCGTCAGTCCTACATT 58.634 45.455 0.00 0.00 0.00 2.71
7004 7501 1.214175 TCAGACTGCCCTGGTTTTTGA 59.786 47.619 0.00 0.00 34.99 2.69
7013 7510 3.374402 CGTCCGTCAGACTGCCCT 61.374 66.667 0.00 0.00 43.91 5.19
7080 7578 2.562298 AGCCAAATTTTGCCTCAATCGA 59.438 40.909 10.43 0.00 0.00 3.59
7083 7581 7.066163 GCTTAAATAGCCAAATTTTGCCTCAAT 59.934 33.333 10.43 0.00 44.48 2.57
7120 7618 3.764972 GGTGGATAGGCTAGGTATGAGAC 59.235 52.174 0.00 0.00 0.00 3.36
7121 7619 3.663136 AGGTGGATAGGCTAGGTATGAGA 59.337 47.826 0.00 0.00 0.00 3.27
7123 7621 4.108124 AGAAGGTGGATAGGCTAGGTATGA 59.892 45.833 0.00 0.00 0.00 2.15
7126 7624 3.181420 GGAGAAGGTGGATAGGCTAGGTA 60.181 52.174 0.00 0.00 0.00 3.08
7127 7625 2.426561 GGAGAAGGTGGATAGGCTAGGT 60.427 54.545 0.00 0.00 0.00 3.08
7144 7642 1.610673 GGTGGCACAGAGAGGGAGA 60.611 63.158 20.82 0.00 41.80 3.71
7156 7654 2.676121 CGGGCTTGAATGGTGGCA 60.676 61.111 0.00 0.00 0.00 4.92
7164 7662 1.005394 GGAGACGAACGGGCTTGAA 60.005 57.895 0.00 0.00 0.00 2.69
7175 7673 0.964358 GAACGGGGAAGAGGAGACGA 60.964 60.000 0.00 0.00 0.00 4.20
7178 7676 0.324460 GGAGAACGGGGAAGAGGAGA 60.324 60.000 0.00 0.00 0.00 3.71
7186 7684 2.285368 AGCATGGGAGAACGGGGA 60.285 61.111 0.00 0.00 0.00 4.81
7192 7690 2.735772 GCCGGAGAGCATGGGAGAA 61.736 63.158 5.05 0.00 0.00 2.87
7280 7779 1.748591 GCGCCTTGATTGGATCTCCTT 60.749 52.381 0.00 0.00 36.82 3.36
7312 7811 2.665603 GAAGGCAGCCCGAGAACT 59.334 61.111 8.22 0.00 35.76 3.01
7314 7813 2.579657 TTCGAAGGCAGCCCGAGAA 61.580 57.895 8.22 8.41 35.76 2.87
7316 7815 2.788191 AAGTTCGAAGGCAGCCCGAG 62.788 60.000 8.22 0.00 35.76 4.63
7370 7869 2.612251 CTCCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
7371 7870 3.039526 CCTCCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
7372 7871 3.036959 TCCTCCCCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
7373 7872 2.612251 CTCCTCCCCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
7374 7873 3.039526 CCTCCTCCCCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
7375 7874 3.036959 TCCTCCTCCCCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
7376 7875 2.612251 CTCCTCCTCCCCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
7377 7876 3.039526 CCTCCTCCTCCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
7378 7877 3.036959 TCCTCCTCCTCCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
7379 7878 2.612251 CTCCTCCTCCTCCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
7380 7879 3.039526 CCTCCTCCTCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
7381 7880 3.036959 TCCTCCTCCTCCTCCCCC 61.037 72.222 0.00 0.00 0.00 5.40
7382 7881 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
7383 7882 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
7384 7883 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
7385 7884 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
7386 7885 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
7414 7913 3.470888 ACCTTCATCGGCTCCGGG 61.471 66.667 0.00 3.89 40.25 5.73
7469 7989 1.224315 CTGCCATGATGAACCCCGA 59.776 57.895 0.00 0.00 0.00 5.14
7470 7992 0.816825 CTCTGCCATGATGAACCCCG 60.817 60.000 0.00 0.00 0.00 5.73
7479 8001 3.473647 CCTCCGCCTCTGCCATGA 61.474 66.667 0.00 0.00 0.00 3.07
7512 8034 2.350895 CCATCACCGTGGCTTGGA 59.649 61.111 9.29 0.00 31.43 3.53
7520 8042 2.267006 CTGCTCTGCCATCACCGT 59.733 61.111 0.00 0.00 0.00 4.83
7524 8046 2.119029 GCATGCTGCTCTGCCATCA 61.119 57.895 11.37 0.00 40.96 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.