Multiple sequence alignment - TraesCS5D01G381300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G381300 chr5D 100.000 5315 0 0 1 5315 451671308 451676622 0.000000e+00 9816
1 TraesCS5D01G381300 chr5D 80.398 1056 185 18 3142 4189 34077476 34076435 0.000000e+00 784
2 TraesCS5D01G381300 chr5A 93.800 3355 127 34 1933 5239 570500781 570504102 0.000000e+00 4968
3 TraesCS5D01G381300 chr5A 89.238 1431 73 30 467 1847 570499352 570500751 0.000000e+00 1714
4 TraesCS5D01G381300 chr5A 80.188 1065 189 19 3136 4189 22718139 22719192 0.000000e+00 778
5 TraesCS5D01G381300 chr5A 90.909 275 19 5 2 271 570498995 570499268 1.090000e-96 364
6 TraesCS5D01G381300 chr5A 95.312 128 4 2 330 455 600480228 600480355 9.030000e-48 202
7 TraesCS5D01G381300 chr5A 100.000 55 0 0 5261 5315 570504099 570504153 9.420000e-18 102
8 TraesCS5D01G381300 chr5B 95.657 2671 95 9 1584 4243 551500321 551502981 0.000000e+00 4270
9 TraesCS5D01G381300 chr5B 85.349 1017 83 37 4274 5250 551503296 551504286 0.000000e+00 992
10 TraesCS5D01G381300 chr5B 86.311 957 53 24 631 1544 551499150 551500071 0.000000e+00 970
11 TraesCS5D01G381300 chr5B 79.905 1055 192 15 3142 4189 25268831 25267790 0.000000e+00 756
12 TraesCS5D01G381300 chrUn 96.063 127 3 2 330 455 30689381 30689256 6.980000e-49 206
13 TraesCS5D01G381300 chr3D 96.063 127 4 1 330 456 260996560 260996435 6.980000e-49 206
14 TraesCS5D01G381300 chr3A 94.776 134 4 3 330 462 445269050 445268919 6.980000e-49 206
15 TraesCS5D01G381300 chr3A 95.276 127 4 2 330 455 11715594 11715469 3.250000e-47 200
16 TraesCS5D01G381300 chr3A 94.488 127 5 2 330 455 11690259 11690134 1.510000e-45 195
17 TraesCS5D01G381300 chr6A 94.488 127 6 1 330 455 7988498 7988624 1.510000e-45 195
18 TraesCS5D01G381300 chr2B 94.488 127 6 1 330 455 6165556 6165430 1.510000e-45 195
19 TraesCS5D01G381300 chr1D 93.701 127 7 1 330 455 338694046 338694172 7.030000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G381300 chr5D 451671308 451676622 5314 False 9816.000000 9816 100.000000 1 5315 1 chr5D.!!$F1 5314
1 TraesCS5D01G381300 chr5D 34076435 34077476 1041 True 784.000000 784 80.398000 3142 4189 1 chr5D.!!$R1 1047
2 TraesCS5D01G381300 chr5A 570498995 570504153 5158 False 1787.000000 4968 93.486750 2 5315 4 chr5A.!!$F3 5313
3 TraesCS5D01G381300 chr5A 22718139 22719192 1053 False 778.000000 778 80.188000 3136 4189 1 chr5A.!!$F1 1053
4 TraesCS5D01G381300 chr5B 551499150 551504286 5136 False 2077.333333 4270 89.105667 631 5250 3 chr5B.!!$F1 4619
5 TraesCS5D01G381300 chr5B 25267790 25268831 1041 True 756.000000 756 79.905000 3142 4189 1 chr5B.!!$R1 1047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 490 0.107654 GGGCACATCTAGACACACCC 60.108 60.0 0.00 0.3 0.00 4.61 F
463 492 0.246635 GCACATCTAGACACACCCGT 59.753 55.0 0.00 0.0 0.00 5.28 F
1007 1072 0.253327 AAGGCTTTCCTGACCGATCC 59.747 55.0 0.00 0.0 43.40 3.36 F
1041 1106 0.464036 TCAGTTCGTCTTGGTGTGCT 59.536 50.0 0.00 0.0 0.00 4.40 F
2802 3117 0.751277 TGTGGGAACTGTGTTGCCAG 60.751 55.0 20.88 0.0 40.63 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1942 0.180642 TTGACGGCCACCAACTACAA 59.819 50.000 2.24 0.0 0.00 2.41 R
2100 2407 0.249657 CTGCTAGGCTAAGGGAAGCG 60.250 60.000 0.00 0.0 43.74 4.68 R
2505 2820 0.032952 TGGAACGTCTTCTTGGACCG 59.967 55.000 0.00 0.0 33.07 4.79 R
2930 3245 1.597461 GGAAGAGGTTAGCAGCCGT 59.403 57.895 0.00 0.0 0.00 5.68 R
4550 5166 0.250901 AGCAAGAACGGGCAGTCATT 60.251 50.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.609208 AGGTCGCAGCTCAAACATTT 58.391 45.000 0.00 0.00 0.00 2.32
56 60 9.614792 CAGTTTACTAAATTATAGTCCTGCCTT 57.385 33.333 4.30 0.00 0.00 4.35
94 98 7.393796 GTCCTTTCGTCCAGATATATAAGAGGA 59.606 40.741 0.00 0.00 0.00 3.71
99 103 9.929180 TTCGTCCAGATATATAAGAGGAATTTG 57.071 33.333 8.85 0.00 0.00 2.32
100 104 9.309224 TCGTCCAGATATATAAGAGGAATTTGA 57.691 33.333 2.95 0.00 0.00 2.69
104 108 9.539825 CCAGATATATAAGAGGAATTTGATCCG 57.460 37.037 0.00 0.00 44.60 4.18
109 113 8.839310 ATATAAGAGGAATTTGATCCGTCAAG 57.161 34.615 0.00 0.00 44.62 3.02
110 114 4.826274 AGAGGAATTTGATCCGTCAAGA 57.174 40.909 0.00 0.00 44.62 3.02
111 115 4.508662 AGAGGAATTTGATCCGTCAAGAC 58.491 43.478 0.00 0.00 44.62 3.01
141 147 9.463443 GCTTTGATCAACACTTAATTTTACACT 57.537 29.630 7.89 0.00 0.00 3.55
277 306 1.348594 GATTAGCTTGTCGCGGTGC 59.651 57.895 6.13 5.83 45.59 5.01
291 320 2.558313 GTGCGACAGCTTTGCCTC 59.442 61.111 0.00 0.00 45.42 4.70
292 321 2.669569 TGCGACAGCTTTGCCTCC 60.670 61.111 0.00 0.00 45.42 4.30
295 324 2.361737 GACAGCTTTGCCTCCCCC 60.362 66.667 0.00 0.00 0.00 5.40
296 325 2.860971 ACAGCTTTGCCTCCCCCT 60.861 61.111 0.00 0.00 0.00 4.79
298 327 2.204213 AGCTTTGCCTCCCCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
299 328 1.854507 AGCTTTGCCTCCCCCTCTT 60.855 57.895 0.00 0.00 0.00 2.85
300 329 1.077445 GCTTTGCCTCCCCCTCTTT 59.923 57.895 0.00 0.00 0.00 2.52
301 330 0.967887 GCTTTGCCTCCCCCTCTTTC 60.968 60.000 0.00 0.00 0.00 2.62
302 331 0.405585 CTTTGCCTCCCCCTCTTTCA 59.594 55.000 0.00 0.00 0.00 2.69
303 332 0.112412 TTTGCCTCCCCCTCTTTCAC 59.888 55.000 0.00 0.00 0.00 3.18
304 333 1.789576 TTGCCTCCCCCTCTTTCACC 61.790 60.000 0.00 0.00 0.00 4.02
305 334 1.925972 GCCTCCCCCTCTTTCACCT 60.926 63.158 0.00 0.00 0.00 4.00
306 335 0.620700 GCCTCCCCCTCTTTCACCTA 60.621 60.000 0.00 0.00 0.00 3.08
307 336 1.977202 GCCTCCCCCTCTTTCACCTAT 60.977 57.143 0.00 0.00 0.00 2.57
308 337 1.771255 CCTCCCCCTCTTTCACCTATG 59.229 57.143 0.00 0.00 0.00 2.23
309 338 2.629639 CCTCCCCCTCTTTCACCTATGA 60.630 54.545 0.00 0.00 0.00 2.15
310 339 3.321950 CTCCCCCTCTTTCACCTATGAT 58.678 50.000 0.00 0.00 33.85 2.45
311 340 3.718956 CTCCCCCTCTTTCACCTATGATT 59.281 47.826 0.00 0.00 33.85 2.57
348 377 7.617041 AAAAAGCACATCTAAGTCCTATGTC 57.383 36.000 0.00 0.00 31.60 3.06
349 378 5.939764 AAGCACATCTAAGTCCTATGTCA 57.060 39.130 0.00 0.00 31.60 3.58
350 379 6.491714 AAGCACATCTAAGTCCTATGTCAT 57.508 37.500 0.00 0.00 31.60 3.06
351 380 6.491714 AGCACATCTAAGTCCTATGTCATT 57.508 37.500 0.00 0.00 31.60 2.57
352 381 6.286758 AGCACATCTAAGTCCTATGTCATTG 58.713 40.000 0.00 0.00 31.60 2.82
353 382 6.098838 AGCACATCTAAGTCCTATGTCATTGA 59.901 38.462 0.00 0.00 31.60 2.57
354 383 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
355 384 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
356 385 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
357 386 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
360 389 9.647918 TCTAAGTCCTATGTCATTGATCTTAGT 57.352 33.333 21.49 4.29 35.68 2.24
361 390 9.906660 CTAAGTCCTATGTCATTGATCTTAGTC 57.093 37.037 18.22 0.00 32.09 2.59
362 391 6.976088 AGTCCTATGTCATTGATCTTAGTCG 58.024 40.000 0.00 0.00 0.00 4.18
363 392 6.773200 AGTCCTATGTCATTGATCTTAGTCGA 59.227 38.462 0.00 0.00 0.00 4.20
364 393 7.040755 AGTCCTATGTCATTGATCTTAGTCGAG 60.041 40.741 0.00 0.00 0.00 4.04
365 394 6.998673 TCCTATGTCATTGATCTTAGTCGAGA 59.001 38.462 0.00 0.00 0.00 4.04
366 395 7.667635 TCCTATGTCATTGATCTTAGTCGAGAT 59.332 37.037 0.00 0.00 39.04 2.75
367 396 8.303156 CCTATGTCATTGATCTTAGTCGAGATT 58.697 37.037 0.00 0.00 36.54 2.40
368 397 9.340695 CTATGTCATTGATCTTAGTCGAGATTC 57.659 37.037 0.00 0.00 36.54 2.52
369 398 6.202226 TGTCATTGATCTTAGTCGAGATTCG 58.798 40.000 0.00 0.00 42.10 3.34
370 399 6.183360 TGTCATTGATCTTAGTCGAGATTCGT 60.183 38.462 0.00 0.00 41.35 3.85
371 400 6.141527 GTCATTGATCTTAGTCGAGATTCGTG 59.858 42.308 0.00 0.00 41.35 4.35
372 401 5.562506 TTGATCTTAGTCGAGATTCGTGT 57.437 39.130 0.00 0.00 41.35 4.49
373 402 4.909894 TGATCTTAGTCGAGATTCGTGTG 58.090 43.478 0.00 0.00 41.35 3.82
374 403 3.759527 TCTTAGTCGAGATTCGTGTGG 57.240 47.619 0.00 0.00 41.35 4.17
375 404 3.340928 TCTTAGTCGAGATTCGTGTGGA 58.659 45.455 0.00 0.00 41.35 4.02
376 405 3.945921 TCTTAGTCGAGATTCGTGTGGAT 59.054 43.478 0.00 0.00 41.35 3.41
377 406 5.121105 TCTTAGTCGAGATTCGTGTGGATA 58.879 41.667 0.00 0.00 41.35 2.59
378 407 5.763698 TCTTAGTCGAGATTCGTGTGGATAT 59.236 40.000 0.00 0.00 41.35 1.63
379 408 4.920640 AGTCGAGATTCGTGTGGATATT 57.079 40.909 0.00 0.00 41.35 1.28
380 409 5.263968 AGTCGAGATTCGTGTGGATATTT 57.736 39.130 0.00 0.00 41.35 1.40
381 410 5.661458 AGTCGAGATTCGTGTGGATATTTT 58.339 37.500 0.00 0.00 41.35 1.82
382 411 5.749109 AGTCGAGATTCGTGTGGATATTTTC 59.251 40.000 0.00 0.00 41.35 2.29
383 412 5.749109 GTCGAGATTCGTGTGGATATTTTCT 59.251 40.000 0.00 0.00 41.35 2.52
384 413 6.255887 GTCGAGATTCGTGTGGATATTTTCTT 59.744 38.462 0.00 0.00 41.35 2.52
385 414 6.816640 TCGAGATTCGTGTGGATATTTTCTTT 59.183 34.615 0.00 0.00 41.35 2.52
386 415 7.333423 TCGAGATTCGTGTGGATATTTTCTTTT 59.667 33.333 0.00 0.00 41.35 2.27
387 416 7.962918 CGAGATTCGTGTGGATATTTTCTTTTT 59.037 33.333 0.00 0.00 34.72 1.94
388 417 9.278734 GAGATTCGTGTGGATATTTTCTTTTTC 57.721 33.333 0.00 0.00 0.00 2.29
389 418 9.014297 AGATTCGTGTGGATATTTTCTTTTTCT 57.986 29.630 0.00 0.00 0.00 2.52
390 419 9.626045 GATTCGTGTGGATATTTTCTTTTTCTT 57.374 29.630 0.00 0.00 0.00 2.52
391 420 9.981114 ATTCGTGTGGATATTTTCTTTTTCTTT 57.019 25.926 0.00 0.00 0.00 2.52
392 421 9.458374 TTCGTGTGGATATTTTCTTTTTCTTTC 57.542 29.630 0.00 0.00 0.00 2.62
393 422 8.846211 TCGTGTGGATATTTTCTTTTTCTTTCT 58.154 29.630 0.00 0.00 0.00 2.52
394 423 9.463443 CGTGTGGATATTTTCTTTTTCTTTCTT 57.537 29.630 0.00 0.00 0.00 2.52
410 439 8.466086 TTTCTTTCTTCTTTTTCTCTTTGTGC 57.534 30.769 0.00 0.00 0.00 4.57
411 440 7.396540 TCTTTCTTCTTTTTCTCTTTGTGCT 57.603 32.000 0.00 0.00 0.00 4.40
412 441 7.830739 TCTTTCTTCTTTTTCTCTTTGTGCTT 58.169 30.769 0.00 0.00 0.00 3.91
413 442 7.756722 TCTTTCTTCTTTTTCTCTTTGTGCTTG 59.243 33.333 0.00 0.00 0.00 4.01
414 443 6.757897 TCTTCTTTTTCTCTTTGTGCTTGA 57.242 33.333 0.00 0.00 0.00 3.02
415 444 7.338800 TCTTCTTTTTCTCTTTGTGCTTGAT 57.661 32.000 0.00 0.00 0.00 2.57
416 445 7.775120 TCTTCTTTTTCTCTTTGTGCTTGATT 58.225 30.769 0.00 0.00 0.00 2.57
417 446 7.917505 TCTTCTTTTTCTCTTTGTGCTTGATTC 59.082 33.333 0.00 0.00 0.00 2.52
418 447 7.099266 TCTTTTTCTCTTTGTGCTTGATTCA 57.901 32.000 0.00 0.00 0.00 2.57
419 448 6.974622 TCTTTTTCTCTTTGTGCTTGATTCAC 59.025 34.615 0.00 0.00 35.14 3.18
420 449 6.455360 TTTTCTCTTTGTGCTTGATTCACT 57.545 33.333 0.00 0.00 35.58 3.41
421 450 5.679734 TTCTCTTTGTGCTTGATTCACTC 57.320 39.130 0.00 0.00 35.58 3.51
422 451 4.707105 TCTCTTTGTGCTTGATTCACTCA 58.293 39.130 0.00 0.00 35.58 3.41
423 452 4.512944 TCTCTTTGTGCTTGATTCACTCAC 59.487 41.667 9.39 9.39 35.58 3.51
424 453 4.454678 TCTTTGTGCTTGATTCACTCACT 58.545 39.130 14.71 0.00 35.58 3.41
425 454 4.883585 TCTTTGTGCTTGATTCACTCACTT 59.116 37.500 14.71 0.00 35.58 3.16
426 455 6.054941 TCTTTGTGCTTGATTCACTCACTTA 58.945 36.000 14.71 4.85 35.58 2.24
427 456 5.929697 TTGTGCTTGATTCACTCACTTAG 57.070 39.130 14.71 0.00 35.58 2.18
428 457 5.213891 TGTGCTTGATTCACTCACTTAGA 57.786 39.130 14.71 0.00 35.58 2.10
429 458 5.798132 TGTGCTTGATTCACTCACTTAGAT 58.202 37.500 14.71 0.00 35.58 1.98
430 459 6.935167 TGTGCTTGATTCACTCACTTAGATA 58.065 36.000 14.71 0.00 35.58 1.98
431 460 7.559486 TGTGCTTGATTCACTCACTTAGATAT 58.441 34.615 14.71 0.00 35.58 1.63
432 461 7.493645 TGTGCTTGATTCACTCACTTAGATATG 59.506 37.037 14.71 0.00 35.58 1.78
433 462 6.481313 TGCTTGATTCACTCACTTAGATATGC 59.519 38.462 0.00 0.00 32.17 3.14
434 463 6.481313 GCTTGATTCACTCACTTAGATATGCA 59.519 38.462 0.00 0.00 32.17 3.96
435 464 7.011763 GCTTGATTCACTCACTTAGATATGCAA 59.988 37.037 0.00 0.00 32.17 4.08
436 465 8.969260 TTGATTCACTCACTTAGATATGCAAT 57.031 30.769 0.00 0.00 32.17 3.56
443 472 9.416794 CACTCACTTAGATATGCAATAACTAGG 57.583 37.037 0.00 0.00 35.88 3.02
444 473 8.589338 ACTCACTTAGATATGCAATAACTAGGG 58.411 37.037 0.00 0.00 36.16 3.53
445 474 7.386851 TCACTTAGATATGCAATAACTAGGGC 58.613 38.462 0.00 0.00 36.16 5.19
446 475 7.016170 TCACTTAGATATGCAATAACTAGGGCA 59.984 37.037 0.00 0.00 36.16 5.36
447 476 7.118390 CACTTAGATATGCAATAACTAGGGCAC 59.882 40.741 0.00 0.00 36.16 5.01
448 477 5.567037 AGATATGCAATAACTAGGGCACA 57.433 39.130 0.00 0.00 39.34 4.57
449 478 6.131972 AGATATGCAATAACTAGGGCACAT 57.868 37.500 0.00 0.00 39.34 3.21
450 479 6.176183 AGATATGCAATAACTAGGGCACATC 58.824 40.000 0.00 0.00 39.73 3.06
451 480 3.931907 TGCAATAACTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
452 481 5.567037 ATGCAATAACTAGGGCACATCTA 57.433 39.130 0.00 0.00 39.34 1.98
453 482 4.960938 TGCAATAACTAGGGCACATCTAG 58.039 43.478 0.00 0.00 39.88 2.43
454 483 4.653801 TGCAATAACTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 38.02 2.43
455 484 4.991687 GCAATAACTAGGGCACATCTAGAC 59.008 45.833 0.00 0.00 38.02 2.59
456 485 5.453339 GCAATAACTAGGGCACATCTAGACA 60.453 44.000 0.00 0.00 38.02 3.41
457 486 5.793030 ATAACTAGGGCACATCTAGACAC 57.207 43.478 0.00 0.00 38.02 3.67
458 487 3.101643 ACTAGGGCACATCTAGACACA 57.898 47.619 0.00 0.00 38.02 3.72
459 488 2.761208 ACTAGGGCACATCTAGACACAC 59.239 50.000 0.00 0.00 38.02 3.82
460 489 0.905357 AGGGCACATCTAGACACACC 59.095 55.000 0.00 0.00 0.00 4.16
461 490 0.107654 GGGCACATCTAGACACACCC 60.108 60.000 0.00 0.30 0.00 4.61
462 491 0.460284 GGCACATCTAGACACACCCG 60.460 60.000 0.00 0.00 0.00 5.28
463 492 0.246635 GCACATCTAGACACACCCGT 59.753 55.000 0.00 0.00 0.00 5.28
464 493 1.475280 GCACATCTAGACACACCCGTA 59.525 52.381 0.00 0.00 0.00 4.02
465 494 2.100916 GCACATCTAGACACACCCGTAT 59.899 50.000 0.00 0.00 0.00 3.06
470 499 5.419788 ACATCTAGACACACCCGTATGTTAA 59.580 40.000 0.00 0.00 0.00 2.01
472 501 5.898174 TCTAGACACACCCGTATGTTAATG 58.102 41.667 0.00 0.00 0.00 1.90
486 515 6.363896 CGTATGTTAATGTGTTTGGGGTTTTC 59.636 38.462 0.00 0.00 0.00 2.29
525 554 6.751514 TGTTTGAAGAGCTTTGTACTTTCA 57.248 33.333 0.00 0.00 0.00 2.69
532 561 5.675538 AGAGCTTTGTACTTTCAGTGAAGT 58.324 37.500 5.56 9.01 42.27 3.01
595 625 6.812879 ACTCGGGGACTTTAAAAACATTAG 57.187 37.500 0.00 0.00 0.00 1.73
596 626 5.182570 ACTCGGGGACTTTAAAAACATTAGC 59.817 40.000 0.00 0.00 0.00 3.09
598 628 5.048573 TCGGGGACTTTAAAAACATTAGCAC 60.049 40.000 0.00 0.00 0.00 4.40
601 631 6.645003 GGGGACTTTAAAAACATTAGCACTTG 59.355 38.462 0.00 0.00 0.00 3.16
614 644 7.833786 ACATTAGCACTTGTCATTTGATCAAT 58.166 30.769 9.40 0.00 0.00 2.57
622 652 6.211184 ACTTGTCATTTGATCAATAAAGCCCA 59.789 34.615 9.40 0.00 0.00 5.36
626 656 7.387397 TGTCATTTGATCAATAAAGCCCAAAAC 59.613 33.333 9.40 0.00 0.00 2.43
671 704 7.611213 AAAATATGTCCTGTAAAACCGAGAG 57.389 36.000 0.00 0.00 0.00 3.20
672 705 6.540438 AATATGTCCTGTAAAACCGAGAGA 57.460 37.500 0.00 0.00 0.00 3.10
744 779 4.496927 GCATGGAAAAGCCGGCCG 62.497 66.667 26.15 21.04 40.66 6.13
801 837 4.740822 CAAAGGAGGGCCCCACCG 62.741 72.222 21.43 6.38 39.29 4.94
903 942 2.452114 CTCCCTCCACTGTCCCCT 59.548 66.667 0.00 0.00 0.00 4.79
904 943 1.687493 CTCCCTCCACTGTCCCCTC 60.687 68.421 0.00 0.00 0.00 4.30
906 945 2.689034 CCTCCACTGTCCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
907 946 2.689034 CTCCACTGTCCCCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
909 948 4.675303 CCACTGTCCCCTCCCCCA 62.675 72.222 0.00 0.00 0.00 4.96
911 950 3.869934 ACTGTCCCCTCCCCCACA 61.870 66.667 0.00 0.00 0.00 4.17
912 951 2.531685 CTGTCCCCTCCCCCACAA 60.532 66.667 0.00 0.00 0.00 3.33
923 965 1.268283 CCCCCACAACCTCTCTCTCC 61.268 65.000 0.00 0.00 0.00 3.71
965 1007 3.390135 TCTCAACAAATCGAGCGAAACT 58.610 40.909 0.00 0.00 0.00 2.66
993 1046 2.403252 AATCCGACGAATTCAAGGCT 57.597 45.000 6.22 0.00 0.00 4.58
997 1050 1.130561 CCGACGAATTCAAGGCTTTCC 59.869 52.381 6.22 0.00 0.00 3.13
1004 1069 0.762418 TTCAAGGCTTTCCTGACCGA 59.238 50.000 0.00 0.00 43.40 4.69
1007 1072 0.253327 AAGGCTTTCCTGACCGATCC 59.747 55.000 0.00 0.00 43.40 3.36
1040 1105 0.861837 CTCAGTTCGTCTTGGTGTGC 59.138 55.000 0.00 0.00 0.00 4.57
1041 1106 0.464036 TCAGTTCGTCTTGGTGTGCT 59.536 50.000 0.00 0.00 0.00 4.40
1179 1254 2.203669 TTCGTCGAGGGGGTTCCA 60.204 61.111 5.12 0.00 38.24 3.53
1180 1255 1.823169 CTTCGTCGAGGGGGTTCCAA 61.823 60.000 5.12 0.00 38.24 3.53
1182 1257 2.047560 GTCGAGGGGGTTCCAACG 60.048 66.667 0.00 0.00 38.24 4.10
1535 1619 1.105167 TCACCGTCTTCACCGTGAGT 61.105 55.000 0.64 0.00 36.29 3.41
1547 1649 1.564818 ACCGTGAGTATCTCCTCTCCA 59.435 52.381 0.00 0.00 34.92 3.86
1644 1942 8.816640 ATTTTTCAGTTGCTTGAACGAATATT 57.183 26.923 0.00 0.00 39.80 1.28
1657 1955 4.957759 ACGAATATTTGTAGTTGGTGGC 57.042 40.909 6.55 0.00 0.00 5.01
1658 1956 3.692593 ACGAATATTTGTAGTTGGTGGCC 59.307 43.478 6.55 0.00 0.00 5.36
1680 1978 3.742882 CGTCAATGGATCAATCATAGCGT 59.257 43.478 0.00 0.00 0.00 5.07
1712 2010 9.249053 TGTATTCCTGTTAATATGGAGCAAAAA 57.751 29.630 0.00 0.00 0.00 1.94
1788 2092 6.467723 ACGATAACTACAGTTGCTTTTCTG 57.532 37.500 4.86 0.00 38.90 3.02
1887 2191 9.268268 TCTAGTTGAATTTCACGATTACAAGTT 57.732 29.630 0.00 0.00 0.00 2.66
1888 2192 9.530129 CTAGTTGAATTTCACGATTACAAGTTC 57.470 33.333 0.00 0.00 0.00 3.01
1889 2193 7.925993 AGTTGAATTTCACGATTACAAGTTCA 58.074 30.769 0.00 0.00 0.00 3.18
1890 2194 8.567948 AGTTGAATTTCACGATTACAAGTTCAT 58.432 29.630 0.00 0.00 29.20 2.57
1891 2195 9.820229 GTTGAATTTCACGATTACAAGTTCATA 57.180 29.630 0.00 0.00 29.20 2.15
1930 2234 4.985845 CCCATTTTTGGGCGTCAC 57.014 55.556 0.00 0.00 42.99 3.67
1931 2235 2.045280 CCCATTTTTGGGCGTCACA 58.955 52.632 0.00 0.00 42.99 3.58
1945 2249 3.002144 GGCGTCACAAACAATTGCAAATT 59.998 39.130 1.71 0.00 40.34 1.82
1979 2284 7.359514 GCAAGTTGGCATATTTTCTTTTGAGTC 60.360 37.037 4.75 0.00 0.00 3.36
2177 2484 2.359975 CCCTTTGTCCGTGCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
2202 2509 2.888863 CCTGAGTCTGCTCCGTCC 59.111 66.667 0.00 0.00 40.95 4.79
2294 2609 4.343526 TCATTTTAATTGCCACCTGTGTGT 59.656 37.500 0.00 0.00 41.09 3.72
2366 2681 3.932089 GAGCTCATCAAGAAACCTCTGAC 59.068 47.826 9.40 0.00 30.03 3.51
2505 2820 2.294791 AGGCATATAGTGTCAGCTCGAC 59.705 50.000 8.75 8.75 45.61 4.20
2660 2975 4.214986 TGCGGATTCAACTATCAGGAAA 57.785 40.909 0.00 0.00 0.00 3.13
2802 3117 0.751277 TGTGGGAACTGTGTTGCCAG 60.751 55.000 20.88 0.00 40.63 4.85
2806 3121 1.103398 GGAACTGTGTTGCCAGCTGT 61.103 55.000 13.81 0.00 35.83 4.40
2930 3245 5.246883 AGGTGATGATATTGACCATGATCGA 59.753 40.000 0.00 0.00 0.00 3.59
2991 3308 5.821516 TCCTTTTTCTTTTCACTGCGTTA 57.178 34.783 0.00 0.00 0.00 3.18
3067 3386 4.734854 CACAGAACTGTTTTTGAATGTCCG 59.265 41.667 4.63 0.00 42.83 4.79
3070 3389 3.708563 ACTGTTTTTGAATGTCCGTGG 57.291 42.857 0.00 0.00 0.00 4.94
3269 3588 1.534235 ACCAGAGAAGTGAGCGGGT 60.534 57.895 0.00 0.00 0.00 5.28
3958 4280 4.934602 GCAAAGAGTACATCAAGAGCTTCT 59.065 41.667 0.00 0.00 0.00 2.85
4017 4339 2.933287 AGGGGAACGGTGGCATCA 60.933 61.111 0.00 0.00 0.00 3.07
4170 4495 4.228567 GAGCTCGCCCTAGCACCC 62.229 72.222 0.00 0.00 45.30 4.61
4310 4920 6.578313 TGACCTGACTAGTATAGAGTTCCT 57.422 41.667 0.00 0.00 42.77 3.36
4389 5005 5.218139 CCTATCTTGTATTAACCGACCGAC 58.782 45.833 0.00 0.00 0.00 4.79
4446 5062 4.454678 TGAGGAATGCCATCATGTTACTC 58.545 43.478 0.00 0.00 36.29 2.59
4482 5098 3.641437 TTCTGTATGCAAACTTGGTGC 57.359 42.857 0.00 0.00 42.55 5.01
4544 5160 0.899717 TGCCTGAAAATGACTGCCCC 60.900 55.000 0.00 0.00 0.00 5.80
4545 5161 1.607801 GCCTGAAAATGACTGCCCCC 61.608 60.000 0.00 0.00 0.00 5.40
4546 5162 0.040204 CCTGAAAATGACTGCCCCCT 59.960 55.000 0.00 0.00 0.00 4.79
4547 5163 1.180029 CTGAAAATGACTGCCCCCTG 58.820 55.000 0.00 0.00 0.00 4.45
4548 5164 0.776810 TGAAAATGACTGCCCCCTGA 59.223 50.000 0.00 0.00 0.00 3.86
4549 5165 1.146774 TGAAAATGACTGCCCCCTGAA 59.853 47.619 0.00 0.00 0.00 3.02
4550 5166 2.247358 GAAAATGACTGCCCCCTGAAA 58.753 47.619 0.00 0.00 0.00 2.69
4551 5167 2.397044 AAATGACTGCCCCCTGAAAA 57.603 45.000 0.00 0.00 0.00 2.29
4552 5168 2.629017 AATGACTGCCCCCTGAAAAT 57.371 45.000 0.00 0.00 0.00 1.82
4553 5169 1.856629 ATGACTGCCCCCTGAAAATG 58.143 50.000 0.00 0.00 0.00 2.32
4554 5170 0.776810 TGACTGCCCCCTGAAAATGA 59.223 50.000 0.00 0.00 0.00 2.57
4555 5171 1.177401 GACTGCCCCCTGAAAATGAC 58.823 55.000 0.00 0.00 0.00 3.06
4556 5172 0.779997 ACTGCCCCCTGAAAATGACT 59.220 50.000 0.00 0.00 0.00 3.41
4557 5173 1.180029 CTGCCCCCTGAAAATGACTG 58.820 55.000 0.00 0.00 0.00 3.51
4558 5174 0.899717 TGCCCCCTGAAAATGACTGC 60.900 55.000 0.00 0.00 0.00 4.40
4559 5175 1.607801 GCCCCCTGAAAATGACTGCC 61.608 60.000 0.00 0.00 0.00 4.85
4560 5176 0.972471 CCCCCTGAAAATGACTGCCC 60.972 60.000 0.00 0.00 0.00 5.36
4568 5184 0.598065 AAATGACTGCCCGTTCTTGC 59.402 50.000 0.00 0.00 0.00 4.01
4571 5187 1.301716 GACTGCCCGTTCTTGCTGA 60.302 57.895 0.00 0.00 0.00 4.26
4704 5334 3.044235 ACATCTTCAGTGAATGCGACA 57.956 42.857 5.91 0.00 0.00 4.35
4720 5350 3.476646 CACACGAGCTGCTGCGAG 61.477 66.667 21.95 17.70 45.42 5.03
4736 5366 1.267732 GCGAGATGTGGATCAAAAGCG 60.268 52.381 0.00 0.00 0.00 4.68
4776 5406 0.530288 TCGTCATGTGATCTCGCCAA 59.470 50.000 0.00 0.00 0.00 4.52
4809 5439 7.054491 ACTGTTAAATGGCAGTTGATTCTTT 57.946 32.000 10.91 0.00 42.61 2.52
4812 5442 9.132521 CTGTTAAATGGCAGTTGATTCTTTTAG 57.867 33.333 10.91 0.00 0.00 1.85
4813 5443 8.087750 TGTTAAATGGCAGTTGATTCTTTTAGG 58.912 33.333 10.91 0.00 0.00 2.69
4814 5444 4.725790 ATGGCAGTTGATTCTTTTAGGC 57.274 40.909 0.00 0.00 0.00 3.93
4831 5463 6.524101 TTTAGGCACCTTTTGATGAATACC 57.476 37.500 0.00 0.00 0.00 2.73
4845 5500 4.181309 TGAATACCGGCAAATTTGGAAC 57.819 40.909 19.47 3.20 0.00 3.62
4851 5506 1.455408 CGGCAAATTTGGAACTTTCGC 59.545 47.619 19.47 1.76 0.00 4.70
4862 5517 4.894784 TGGAACTTTCGCTAGAGAACATT 58.105 39.130 8.56 6.17 0.00 2.71
4885 5540 0.462047 ATCGCGGGCCTGAGTTTTAG 60.462 55.000 18.31 0.00 0.00 1.85
4886 5541 1.375523 CGCGGGCCTGAGTTTTAGT 60.376 57.895 18.31 0.00 0.00 2.24
4889 5544 1.068541 GCGGGCCTGAGTTTTAGTTTG 60.069 52.381 18.31 0.00 0.00 2.93
4890 5545 2.227194 CGGGCCTGAGTTTTAGTTTGT 58.773 47.619 5.28 0.00 0.00 2.83
4891 5546 3.404899 CGGGCCTGAGTTTTAGTTTGTA 58.595 45.455 5.28 0.00 0.00 2.41
4892 5547 3.435671 CGGGCCTGAGTTTTAGTTTGTAG 59.564 47.826 5.28 0.00 0.00 2.74
4893 5548 4.395625 GGGCCTGAGTTTTAGTTTGTAGT 58.604 43.478 0.84 0.00 0.00 2.73
4894 5549 4.215613 GGGCCTGAGTTTTAGTTTGTAGTG 59.784 45.833 0.84 0.00 0.00 2.74
4895 5550 4.215613 GGCCTGAGTTTTAGTTTGTAGTGG 59.784 45.833 0.00 0.00 0.00 4.00
4927 5583 5.507077 GTTTCGTCACATGCTGACTTTTAA 58.493 37.500 19.39 10.16 46.50 1.52
4982 5638 7.477144 TGTCTGAATATAATAGTGCGTTTGG 57.523 36.000 0.00 0.00 0.00 3.28
5018 5674 6.331061 AGTCGTTCATACTTGGTCAGAATAC 58.669 40.000 0.00 0.00 0.00 1.89
5168 5833 5.779241 ATGTCCCCTTCACAATCTTTCTA 57.221 39.130 0.00 0.00 0.00 2.10
5172 5837 6.443849 TGTCCCCTTCACAATCTTTCTATAGT 59.556 38.462 0.00 0.00 0.00 2.12
5173 5838 7.037586 TGTCCCCTTCACAATCTTTCTATAGTT 60.038 37.037 0.00 0.00 0.00 2.24
5174 5839 8.483758 GTCCCCTTCACAATCTTTCTATAGTTA 58.516 37.037 0.00 0.00 0.00 2.24
5191 5856 8.671921 TCTATAGTTATTACGCTGGCATAGTAC 58.328 37.037 0.00 0.00 0.00 2.73
5192 5857 5.786264 AGTTATTACGCTGGCATAGTACT 57.214 39.130 0.00 0.00 0.00 2.73
5193 5858 6.889301 AGTTATTACGCTGGCATAGTACTA 57.111 37.500 4.77 4.77 0.00 1.82
5235 5900 1.887198 ACTACGACCTCTTGTCCTGTG 59.113 52.381 0.00 0.00 41.18 3.66
5236 5901 2.160205 CTACGACCTCTTGTCCTGTGA 58.840 52.381 0.00 0.00 41.18 3.58
5237 5902 0.674534 ACGACCTCTTGTCCTGTGAC 59.325 55.000 0.00 0.00 41.18 3.67
5246 5911 0.613260 TGTCCTGTGACATAGGCACC 59.387 55.000 13.21 4.73 46.40 5.01
5247 5912 0.613260 GTCCTGTGACATAGGCACCA 59.387 55.000 13.21 0.00 41.37 4.17
5248 5913 1.210478 GTCCTGTGACATAGGCACCAT 59.790 52.381 13.21 0.00 41.37 3.55
5249 5914 2.434336 GTCCTGTGACATAGGCACCATA 59.566 50.000 13.21 0.00 41.37 2.74
5250 5915 3.111484 TCCTGTGACATAGGCACCATAA 58.889 45.455 13.21 0.00 35.43 1.90
5251 5916 3.521531 TCCTGTGACATAGGCACCATAAA 59.478 43.478 13.21 0.00 35.43 1.40
5252 5917 4.018870 TCCTGTGACATAGGCACCATAAAA 60.019 41.667 13.21 0.00 35.43 1.52
5253 5918 4.704540 CCTGTGACATAGGCACCATAAAAA 59.295 41.667 5.18 0.00 35.43 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108424 GAGCTGCGACCTTCTGTGAT 60.108 55.000 0.00 0.00 0.00 3.06
6 7 1.160137 ATGTTTGAGCTGCGACCTTC 58.840 50.000 0.00 0.00 0.00 3.46
27 28 9.609346 GCAGGACTATAATTTAGTAAACTGGAA 57.391 33.333 0.00 0.00 30.92 3.53
56 60 6.350906 TGGACGAAAGGACTTTCTTTTAGAA 58.649 36.000 19.22 0.00 44.93 2.10
94 98 3.191371 GCCTTGTCTTGACGGATCAAATT 59.809 43.478 0.00 0.00 44.28 1.82
99 103 2.100605 AAGCCTTGTCTTGACGGATC 57.899 50.000 0.00 0.00 0.00 3.36
100 104 2.154462 CAAAGCCTTGTCTTGACGGAT 58.846 47.619 0.00 0.00 0.00 4.18
101 105 1.140052 TCAAAGCCTTGTCTTGACGGA 59.860 47.619 0.00 0.00 33.94 4.69
104 108 4.036734 TGTTGATCAAAGCCTTGTCTTGAC 59.963 41.667 10.35 0.00 33.94 3.18
105 109 4.036734 GTGTTGATCAAAGCCTTGTCTTGA 59.963 41.667 10.35 0.00 33.94 3.02
106 110 4.037208 AGTGTTGATCAAAGCCTTGTCTTG 59.963 41.667 10.35 0.00 33.94 3.02
107 111 4.210331 AGTGTTGATCAAAGCCTTGTCTT 58.790 39.130 10.35 0.00 33.94 3.01
109 113 4.574599 AAGTGTTGATCAAAGCCTTGTC 57.425 40.909 10.35 0.00 33.94 3.18
110 114 6.655078 ATTAAGTGTTGATCAAAGCCTTGT 57.345 33.333 10.35 3.97 33.94 3.16
111 115 7.951530 AAATTAAGTGTTGATCAAAGCCTTG 57.048 32.000 10.35 0.00 0.00 3.61
201 207 6.197842 GCTGAATCACAACTGCAATAATAAGC 59.802 38.462 0.00 0.00 0.00 3.09
203 209 7.155655 TGCTGAATCACAACTGCAATAATAA 57.844 32.000 0.00 0.00 37.84 1.40
244 250 3.718434 AGCTAATCCATGAGGGTCATTCA 59.282 43.478 0.00 0.00 34.28 2.57
277 306 2.747855 GGGGAGGCAAAGCTGTCG 60.748 66.667 0.00 0.00 30.14 4.35
291 320 4.526438 AAATCATAGGTGAAAGAGGGGG 57.474 45.455 0.00 0.00 38.01 5.40
292 321 9.454859 GATAATAAATCATAGGTGAAAGAGGGG 57.545 37.037 0.00 0.00 38.01 4.79
329 358 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
331 360 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
334 363 9.647918 ACTAAGATCAATGACATAGGACTTAGA 57.352 33.333 23.46 4.18 38.20 2.10
335 364 9.906660 GACTAAGATCAATGACATAGGACTTAG 57.093 37.037 19.28 19.28 39.64 2.18
336 365 8.568794 CGACTAAGATCAATGACATAGGACTTA 58.431 37.037 0.00 0.00 0.00 2.24
337 366 7.285629 TCGACTAAGATCAATGACATAGGACTT 59.714 37.037 0.00 0.00 0.00 3.01
338 367 6.773200 TCGACTAAGATCAATGACATAGGACT 59.227 38.462 0.00 0.00 0.00 3.85
339 368 6.971602 TCGACTAAGATCAATGACATAGGAC 58.028 40.000 0.00 0.00 0.00 3.85
340 369 6.998673 TCTCGACTAAGATCAATGACATAGGA 59.001 38.462 0.00 0.00 0.00 2.94
341 370 7.208225 TCTCGACTAAGATCAATGACATAGG 57.792 40.000 0.00 0.00 0.00 2.57
342 371 9.340695 GAATCTCGACTAAGATCAATGACATAG 57.659 37.037 0.00 0.00 34.90 2.23
343 372 8.017946 CGAATCTCGACTAAGATCAATGACATA 58.982 37.037 0.00 0.00 43.74 2.29
344 373 6.860539 CGAATCTCGACTAAGATCAATGACAT 59.139 38.462 0.00 0.00 43.74 3.06
345 374 6.183360 ACGAATCTCGACTAAGATCAATGACA 60.183 38.462 2.59 0.00 43.74 3.58
346 375 6.141527 CACGAATCTCGACTAAGATCAATGAC 59.858 42.308 2.59 0.00 43.74 3.06
347 376 6.183360 ACACGAATCTCGACTAAGATCAATGA 60.183 38.462 2.59 0.00 43.74 2.57
348 377 5.974158 ACACGAATCTCGACTAAGATCAATG 59.026 40.000 2.59 0.00 43.74 2.82
349 378 5.974158 CACACGAATCTCGACTAAGATCAAT 59.026 40.000 2.59 0.00 43.74 2.57
350 379 5.332707 CACACGAATCTCGACTAAGATCAA 58.667 41.667 2.59 0.00 43.74 2.57
351 380 4.201920 CCACACGAATCTCGACTAAGATCA 60.202 45.833 2.59 0.00 43.74 2.92
352 381 4.035324 TCCACACGAATCTCGACTAAGATC 59.965 45.833 2.59 0.00 43.74 2.75
353 382 3.945921 TCCACACGAATCTCGACTAAGAT 59.054 43.478 2.59 0.00 43.74 2.40
354 383 3.340928 TCCACACGAATCTCGACTAAGA 58.659 45.455 2.59 0.00 43.74 2.10
355 384 3.759527 TCCACACGAATCTCGACTAAG 57.240 47.619 2.59 0.00 43.74 2.18
356 385 6.387041 AATATCCACACGAATCTCGACTAA 57.613 37.500 2.59 0.00 43.74 2.24
357 386 6.387041 AAATATCCACACGAATCTCGACTA 57.613 37.500 2.59 0.00 43.74 2.59
358 387 4.920640 AATATCCACACGAATCTCGACT 57.079 40.909 2.59 0.00 43.74 4.18
359 388 5.749109 AGAAAATATCCACACGAATCTCGAC 59.251 40.000 2.59 0.00 43.74 4.20
360 389 5.902681 AGAAAATATCCACACGAATCTCGA 58.097 37.500 2.59 0.00 43.74 4.04
361 390 6.589830 AAGAAAATATCCACACGAATCTCG 57.410 37.500 0.00 0.00 46.93 4.04
362 391 9.278734 GAAAAAGAAAATATCCACACGAATCTC 57.721 33.333 0.00 0.00 0.00 2.75
363 392 9.014297 AGAAAAAGAAAATATCCACACGAATCT 57.986 29.630 0.00 0.00 0.00 2.40
364 393 9.626045 AAGAAAAAGAAAATATCCACACGAATC 57.374 29.630 0.00 0.00 0.00 2.52
365 394 9.981114 AAAGAAAAAGAAAATATCCACACGAAT 57.019 25.926 0.00 0.00 0.00 3.34
366 395 9.458374 GAAAGAAAAAGAAAATATCCACACGAA 57.542 29.630 0.00 0.00 0.00 3.85
367 396 8.846211 AGAAAGAAAAAGAAAATATCCACACGA 58.154 29.630 0.00 0.00 0.00 4.35
368 397 9.463443 AAGAAAGAAAAAGAAAATATCCACACG 57.537 29.630 0.00 0.00 0.00 4.49
384 413 8.925700 GCACAAAGAGAAAAAGAAGAAAGAAAA 58.074 29.630 0.00 0.00 0.00 2.29
385 414 8.306761 AGCACAAAGAGAAAAAGAAGAAAGAAA 58.693 29.630 0.00 0.00 0.00 2.52
386 415 7.830739 AGCACAAAGAGAAAAAGAAGAAAGAA 58.169 30.769 0.00 0.00 0.00 2.52
387 416 7.396540 AGCACAAAGAGAAAAAGAAGAAAGA 57.603 32.000 0.00 0.00 0.00 2.52
388 417 7.756722 TCAAGCACAAAGAGAAAAAGAAGAAAG 59.243 33.333 0.00 0.00 0.00 2.62
389 418 7.601856 TCAAGCACAAAGAGAAAAAGAAGAAA 58.398 30.769 0.00 0.00 0.00 2.52
390 419 7.156876 TCAAGCACAAAGAGAAAAAGAAGAA 57.843 32.000 0.00 0.00 0.00 2.52
391 420 6.757897 TCAAGCACAAAGAGAAAAAGAAGA 57.242 33.333 0.00 0.00 0.00 2.87
392 421 7.703621 TGAATCAAGCACAAAGAGAAAAAGAAG 59.296 33.333 0.00 0.00 0.00 2.85
393 422 7.489113 GTGAATCAAGCACAAAGAGAAAAAGAA 59.511 33.333 0.00 0.00 36.31 2.52
394 423 6.974622 GTGAATCAAGCACAAAGAGAAAAAGA 59.025 34.615 0.00 0.00 36.31 2.52
395 424 6.976925 AGTGAATCAAGCACAAAGAGAAAAAG 59.023 34.615 0.00 0.00 38.70 2.27
396 425 6.866480 AGTGAATCAAGCACAAAGAGAAAAA 58.134 32.000 0.00 0.00 38.70 1.94
397 426 6.095300 TGAGTGAATCAAGCACAAAGAGAAAA 59.905 34.615 0.00 0.00 38.70 2.29
398 427 5.589855 TGAGTGAATCAAGCACAAAGAGAAA 59.410 36.000 0.00 0.00 38.70 2.52
399 428 5.008019 GTGAGTGAATCAAGCACAAAGAGAA 59.992 40.000 10.57 0.00 40.43 2.87
400 429 4.512944 GTGAGTGAATCAAGCACAAAGAGA 59.487 41.667 10.57 0.00 40.43 3.10
401 430 4.514441 AGTGAGTGAATCAAGCACAAAGAG 59.486 41.667 15.75 0.00 40.43 2.85
402 431 4.454678 AGTGAGTGAATCAAGCACAAAGA 58.545 39.130 15.75 0.00 40.43 2.52
403 432 4.825546 AGTGAGTGAATCAAGCACAAAG 57.174 40.909 15.75 0.00 40.43 2.77
404 433 6.054941 TCTAAGTGAGTGAATCAAGCACAAA 58.945 36.000 15.75 5.63 40.43 2.83
405 434 5.610398 TCTAAGTGAGTGAATCAAGCACAA 58.390 37.500 15.75 5.89 40.43 3.33
406 435 5.213891 TCTAAGTGAGTGAATCAAGCACA 57.786 39.130 15.75 0.00 40.43 4.57
407 436 7.518052 GCATATCTAAGTGAGTGAATCAAGCAC 60.518 40.741 8.20 8.20 40.43 4.40
408 437 6.481313 GCATATCTAAGTGAGTGAATCAAGCA 59.519 38.462 0.00 0.00 40.43 3.91
409 438 6.481313 TGCATATCTAAGTGAGTGAATCAAGC 59.519 38.462 0.00 0.00 40.43 4.01
410 439 8.429493 TTGCATATCTAAGTGAGTGAATCAAG 57.571 34.615 0.00 0.00 40.43 3.02
411 440 8.969260 ATTGCATATCTAAGTGAGTGAATCAA 57.031 30.769 0.00 0.00 40.43 2.57
417 446 9.416794 CCTAGTTATTGCATATCTAAGTGAGTG 57.583 37.037 0.00 0.00 0.00 3.51
418 447 8.589338 CCCTAGTTATTGCATATCTAAGTGAGT 58.411 37.037 0.00 0.00 0.00 3.41
419 448 7.547370 GCCCTAGTTATTGCATATCTAAGTGAG 59.453 40.741 0.00 0.00 0.00 3.51
420 449 7.016170 TGCCCTAGTTATTGCATATCTAAGTGA 59.984 37.037 0.00 0.00 0.00 3.41
421 450 7.118390 GTGCCCTAGTTATTGCATATCTAAGTG 59.882 40.741 0.00 0.00 35.96 3.16
422 451 7.162082 GTGCCCTAGTTATTGCATATCTAAGT 58.838 38.462 0.00 0.00 35.96 2.24
423 452 7.161404 TGTGCCCTAGTTATTGCATATCTAAG 58.839 38.462 0.00 0.00 35.96 2.18
424 453 7.073457 TGTGCCCTAGTTATTGCATATCTAA 57.927 36.000 0.00 0.00 35.96 2.10
425 454 6.680148 TGTGCCCTAGTTATTGCATATCTA 57.320 37.500 0.00 0.00 35.96 1.98
426 455 5.567037 TGTGCCCTAGTTATTGCATATCT 57.433 39.130 0.00 0.00 35.96 1.98
427 456 6.176183 AGATGTGCCCTAGTTATTGCATATC 58.824 40.000 10.77 10.77 46.39 1.63
428 457 6.131972 AGATGTGCCCTAGTTATTGCATAT 57.868 37.500 0.00 0.00 38.10 1.78
429 458 5.567037 AGATGTGCCCTAGTTATTGCATA 57.433 39.130 0.00 0.00 35.96 3.14
430 459 4.443978 AGATGTGCCCTAGTTATTGCAT 57.556 40.909 0.00 0.00 35.96 3.96
431 460 3.931907 AGATGTGCCCTAGTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
432 461 4.991687 GTCTAGATGTGCCCTAGTTATTGC 59.008 45.833 0.00 0.00 36.06 3.56
433 462 5.986135 GTGTCTAGATGTGCCCTAGTTATTG 59.014 44.000 0.00 0.00 36.06 1.90
434 463 5.661312 TGTGTCTAGATGTGCCCTAGTTATT 59.339 40.000 0.00 0.00 36.06 1.40
435 464 5.069251 GTGTGTCTAGATGTGCCCTAGTTAT 59.931 44.000 0.00 0.00 36.06 1.89
436 465 4.401519 GTGTGTCTAGATGTGCCCTAGTTA 59.598 45.833 0.00 0.00 36.06 2.24
437 466 3.195825 GTGTGTCTAGATGTGCCCTAGTT 59.804 47.826 0.00 0.00 36.06 2.24
438 467 2.761208 GTGTGTCTAGATGTGCCCTAGT 59.239 50.000 0.00 0.00 36.06 2.57
439 468 2.101582 GGTGTGTCTAGATGTGCCCTAG 59.898 54.545 0.00 0.00 35.97 3.02
440 469 2.108168 GGTGTGTCTAGATGTGCCCTA 58.892 52.381 0.00 0.00 0.00 3.53
441 470 0.905357 GGTGTGTCTAGATGTGCCCT 59.095 55.000 0.00 0.00 0.00 5.19
442 471 0.107654 GGGTGTGTCTAGATGTGCCC 60.108 60.000 0.00 2.72 0.00 5.36
443 472 0.460284 CGGGTGTGTCTAGATGTGCC 60.460 60.000 0.00 0.00 0.00 5.01
444 473 0.246635 ACGGGTGTGTCTAGATGTGC 59.753 55.000 0.00 0.00 0.00 4.57
445 474 3.130516 ACATACGGGTGTGTCTAGATGTG 59.869 47.826 0.00 0.00 28.40 3.21
446 475 3.362706 ACATACGGGTGTGTCTAGATGT 58.637 45.455 0.00 0.00 28.40 3.06
447 476 4.386867 AACATACGGGTGTGTCTAGATG 57.613 45.455 0.00 0.00 33.72 2.90
448 477 6.097839 ACATTAACATACGGGTGTGTCTAGAT 59.902 38.462 0.00 0.00 33.72 1.98
449 478 5.419788 ACATTAACATACGGGTGTGTCTAGA 59.580 40.000 1.62 0.00 33.72 2.43
450 479 5.518847 CACATTAACATACGGGTGTGTCTAG 59.481 44.000 1.62 0.00 33.72 2.43
451 480 5.047164 ACACATTAACATACGGGTGTGTCTA 60.047 40.000 1.62 0.00 44.71 2.59
452 481 4.250464 CACATTAACATACGGGTGTGTCT 58.750 43.478 1.62 0.00 33.72 3.41
453 482 3.998341 ACACATTAACATACGGGTGTGTC 59.002 43.478 1.62 0.00 44.71 3.67
454 483 4.010667 ACACATTAACATACGGGTGTGT 57.989 40.909 3.36 3.36 43.59 3.72
455 484 5.150683 CAAACACATTAACATACGGGTGTG 58.849 41.667 0.00 0.00 39.23 3.82
456 485 4.216687 CCAAACACATTAACATACGGGTGT 59.783 41.667 0.00 0.00 40.85 4.16
457 486 4.380023 CCCAAACACATTAACATACGGGTG 60.380 45.833 0.00 0.00 0.00 4.61
458 487 3.759618 CCCAAACACATTAACATACGGGT 59.240 43.478 0.00 0.00 0.00 5.28
459 488 3.129638 CCCCAAACACATTAACATACGGG 59.870 47.826 0.00 0.00 0.00 5.28
460 489 3.759618 ACCCCAAACACATTAACATACGG 59.240 43.478 0.00 0.00 0.00 4.02
461 490 5.379732 AACCCCAAACACATTAACATACG 57.620 39.130 0.00 0.00 0.00 3.06
462 491 7.170151 GTGAAAACCCCAAACACATTAACATAC 59.830 37.037 0.00 0.00 0.00 2.39
463 492 7.210873 GTGAAAACCCCAAACACATTAACATA 58.789 34.615 0.00 0.00 0.00 2.29
464 493 6.052360 GTGAAAACCCCAAACACATTAACAT 58.948 36.000 0.00 0.00 0.00 2.71
465 494 5.420409 GTGAAAACCCCAAACACATTAACA 58.580 37.500 0.00 0.00 0.00 2.41
470 499 2.758130 AGGTGAAAACCCCAAACACAT 58.242 42.857 0.00 0.00 33.82 3.21
472 501 3.892588 TCATAGGTGAAAACCCCAAACAC 59.107 43.478 0.00 0.00 0.00 3.32
546 575 5.617528 TTTTGTGTGTGTAGAAGGACCTA 57.382 39.130 0.00 0.00 0.00 3.08
583 613 9.809096 TCAAATGACAAGTGCTAATGTTTTTAA 57.191 25.926 0.00 0.00 0.00 1.52
595 625 6.035327 GGCTTTATTGATCAAATGACAAGTGC 59.965 38.462 13.09 7.38 0.00 4.40
596 626 6.532657 GGGCTTTATTGATCAAATGACAAGTG 59.467 38.462 13.09 0.00 0.00 3.16
598 628 6.632909 TGGGCTTTATTGATCAAATGACAAG 58.367 36.000 13.09 10.73 0.00 3.16
601 631 7.148423 GGTTTTGGGCTTTATTGATCAAATGAC 60.148 37.037 13.09 5.06 0.00 3.06
614 644 9.756571 TCAAAGTATATAAGGTTTTGGGCTTTA 57.243 29.630 8.91 0.00 31.47 1.85
757 792 0.652592 CTGCTTGTTTAGATCGCGGG 59.347 55.000 6.13 0.00 0.00 6.13
903 942 0.252284 GAGAGAGAGGTTGTGGGGGA 60.252 60.000 0.00 0.00 0.00 4.81
904 943 1.268283 GGAGAGAGAGGTTGTGGGGG 61.268 65.000 0.00 0.00 0.00 5.40
906 945 1.268283 GGGGAGAGAGAGGTTGTGGG 61.268 65.000 0.00 0.00 0.00 4.61
907 946 0.545309 TGGGGAGAGAGAGGTTGTGG 60.545 60.000 0.00 0.00 0.00 4.17
909 948 0.545548 GGTGGGGAGAGAGAGGTTGT 60.546 60.000 0.00 0.00 0.00 3.32
911 950 0.419459 ATGGTGGGGAGAGAGAGGTT 59.581 55.000 0.00 0.00 0.00 3.50
912 951 0.031616 GATGGTGGGGAGAGAGAGGT 60.032 60.000 0.00 0.00 0.00 3.85
923 965 2.074948 CAGGGGAGGAGATGGTGGG 61.075 68.421 0.00 0.00 0.00 4.61
1004 1069 4.301027 GGAATCCTCGCGCCGGAT 62.301 66.667 19.81 19.81 42.95 4.18
1031 1096 1.095228 ACGAACCACAGCACACCAAG 61.095 55.000 0.00 0.00 0.00 3.61
1040 1105 2.408050 CTCCAAGAAGACGAACCACAG 58.592 52.381 0.00 0.00 0.00 3.66
1041 1106 1.540363 GCTCCAAGAAGACGAACCACA 60.540 52.381 0.00 0.00 0.00 4.17
1135 1210 3.832720 GAATCGCGCGGAGGAGGAG 62.833 68.421 31.69 0.00 0.00 3.69
1162 1237 1.837947 TTGGAACCCCCTCGACGAA 60.838 57.895 0.00 0.00 35.38 3.85
1179 1254 2.186903 CACCATCTAGGCCGCGTT 59.813 61.111 4.92 0.00 43.14 4.84
1180 1255 3.849951 CCACCATCTAGGCCGCGT 61.850 66.667 4.92 0.00 43.14 6.01
1300 1384 2.888863 CGACCCTCTGCTCCTGTC 59.111 66.667 0.00 0.00 0.00 3.51
1301 1385 3.386237 GCGACCCTCTGCTCCTGT 61.386 66.667 0.00 0.00 0.00 4.00
1535 1619 2.246067 AGCAAGGAGTGGAGAGGAGATA 59.754 50.000 0.00 0.00 0.00 1.98
1644 1942 0.180642 TTGACGGCCACCAACTACAA 59.819 50.000 2.24 0.00 0.00 2.41
1657 1955 3.124128 CGCTATGATTGATCCATTGACGG 59.876 47.826 0.00 0.00 0.00 4.79
1658 1956 3.742882 ACGCTATGATTGATCCATTGACG 59.257 43.478 0.00 0.00 0.00 4.35
1680 1978 7.342581 TCCATATTAACAGGAATACAGTTGCA 58.657 34.615 0.00 0.00 0.00 4.08
1771 2075 4.332819 GTCACACAGAAAAGCAACTGTAGT 59.667 41.667 0.00 0.00 44.07 2.73
1788 2092 6.258727 CAGGAAACATGATACTATGGTCACAC 59.741 42.308 0.00 0.00 32.32 3.82
1863 2167 9.047371 TGAACTTGTAATCGTGAAATTCAACTA 57.953 29.630 0.00 0.00 0.00 2.24
1887 2191 4.163458 GGTGTCCAGGGTTATGACTTATGA 59.837 45.833 0.00 0.00 0.00 2.15
1888 2192 4.080582 TGGTGTCCAGGGTTATGACTTATG 60.081 45.833 0.00 0.00 0.00 1.90
1889 2193 4.108570 TGGTGTCCAGGGTTATGACTTAT 58.891 43.478 0.00 0.00 0.00 1.73
1890 2194 3.522759 TGGTGTCCAGGGTTATGACTTA 58.477 45.455 0.00 0.00 0.00 2.24
1891 2195 2.344592 TGGTGTCCAGGGTTATGACTT 58.655 47.619 0.00 0.00 0.00 3.01
1892 2196 2.038863 TGGTGTCCAGGGTTATGACT 57.961 50.000 0.00 0.00 0.00 3.41
1893 2197 2.421529 GGATGGTGTCCAGGGTTATGAC 60.422 54.545 0.00 0.00 46.96 3.06
1930 2234 8.254178 TGCTAAGGATAATTTGCAATTGTTTG 57.746 30.769 7.40 0.00 37.84 2.93
1931 2235 8.845413 TTGCTAAGGATAATTTGCAATTGTTT 57.155 26.923 7.40 0.00 42.93 2.83
1945 2249 7.779798 AGAAAATATGCCAACTTGCTAAGGATA 59.220 33.333 0.00 0.00 0.00 2.59
1979 2284 6.272318 TCAAACAAACTGGCTGTAAGAAATG 58.728 36.000 0.00 0.00 34.07 2.32
2100 2407 0.249657 CTGCTAGGCTAAGGGAAGCG 60.250 60.000 0.00 0.00 43.74 4.68
2177 2484 2.433838 CAGACTCAGGCGCACCAG 60.434 66.667 10.83 3.09 39.06 4.00
2202 2509 5.649557 TCACAACAAAAACTCACATGAAGG 58.350 37.500 0.00 0.00 0.00 3.46
2294 2609 5.072055 TGCAATGAAAAAGAGGATGTCAGA 58.928 37.500 0.00 0.00 0.00 3.27
2366 2681 1.956170 AGCAGACCGTTGTGAAGCG 60.956 57.895 0.00 0.00 0.00 4.68
2505 2820 0.032952 TGGAACGTCTTCTTGGACCG 59.967 55.000 0.00 0.00 33.07 4.79
2660 2975 3.684788 GCAGTGAACCATAACTGAACGAT 59.315 43.478 6.98 0.00 45.43 3.73
2930 3245 1.597461 GGAAGAGGTTAGCAGCCGT 59.403 57.895 0.00 0.00 0.00 5.68
2998 3316 6.936900 GGCTAAGAACAGGATGCTGATTATTA 59.063 38.462 22.24 15.87 42.53 0.98
2999 3317 5.767168 GGCTAAGAACAGGATGCTGATTATT 59.233 40.000 22.24 15.62 42.53 1.40
3003 3321 2.484417 CGGCTAAGAACAGGATGCTGAT 60.484 50.000 22.24 9.35 42.53 2.90
3067 3386 5.928264 AGAAATATTGTTCAGCAAAAGCCAC 59.072 36.000 0.00 0.00 40.91 5.01
3070 3389 8.075593 TGAAAGAAATATTGTTCAGCAAAAGC 57.924 30.769 5.72 0.00 40.91 3.51
3269 3588 4.349503 ATGCACTCGCCCCAGCAA 62.350 61.111 0.00 0.00 40.76 3.91
4256 4581 3.066190 CGAGCACGTACAGGGGGA 61.066 66.667 0.00 0.00 34.56 4.81
4266 4591 4.976116 TCATATTAGACATGAACGAGCACG 59.024 41.667 0.00 0.76 45.75 5.34
4310 4920 2.265739 GCTCCGATGCCTGTGACA 59.734 61.111 0.00 0.00 0.00 3.58
4389 5005 2.286772 GGGTTATGCGCGATTACAAAGG 60.287 50.000 12.10 0.00 0.00 3.11
4510 5126 2.125912 GCAGCATCGACAGACGGT 60.126 61.111 0.00 0.00 42.82 4.83
4544 5160 1.200020 GAACGGGCAGTCATTTTCAGG 59.800 52.381 0.00 0.00 0.00 3.86
4545 5161 2.154462 AGAACGGGCAGTCATTTTCAG 58.846 47.619 0.00 0.00 0.00 3.02
4546 5162 2.270352 AGAACGGGCAGTCATTTTCA 57.730 45.000 0.00 0.00 0.00 2.69
4547 5163 2.922335 GCAAGAACGGGCAGTCATTTTC 60.922 50.000 0.00 0.00 0.00 2.29
4548 5164 1.000274 GCAAGAACGGGCAGTCATTTT 60.000 47.619 0.00 0.00 0.00 1.82
4549 5165 0.598065 GCAAGAACGGGCAGTCATTT 59.402 50.000 0.00 0.00 0.00 2.32
4550 5166 0.250901 AGCAAGAACGGGCAGTCATT 60.251 50.000 0.00 0.00 0.00 2.57
4551 5167 0.957395 CAGCAAGAACGGGCAGTCAT 60.957 55.000 0.00 0.00 0.00 3.06
4552 5168 1.597854 CAGCAAGAACGGGCAGTCA 60.598 57.895 0.00 0.00 0.00 3.41
4553 5169 0.884704 TTCAGCAAGAACGGGCAGTC 60.885 55.000 0.00 0.00 0.00 3.51
4554 5170 0.465460 TTTCAGCAAGAACGGGCAGT 60.465 50.000 0.00 0.00 35.56 4.40
4555 5171 0.883833 ATTTCAGCAAGAACGGGCAG 59.116 50.000 0.00 0.00 35.56 4.85
4556 5172 0.597568 CATTTCAGCAAGAACGGGCA 59.402 50.000 0.00 0.00 35.56 5.36
4557 5173 0.733909 GCATTTCAGCAAGAACGGGC 60.734 55.000 0.00 0.00 35.56 6.13
4558 5174 0.883833 AGCATTTCAGCAAGAACGGG 59.116 50.000 0.00 0.00 35.56 5.28
4559 5175 1.267806 ACAGCATTTCAGCAAGAACGG 59.732 47.619 0.00 0.00 35.56 4.44
4560 5176 2.693797 ACAGCATTTCAGCAAGAACG 57.306 45.000 0.00 0.00 35.56 3.95
4568 5184 3.973657 AGTTTCAGCAACAGCATTTCAG 58.026 40.909 0.00 0.00 37.93 3.02
4604 5220 1.597854 TCAAGAAGCCACAGCACCG 60.598 57.895 0.00 0.00 43.56 4.94
4650 5280 2.223745 GACAGCTTTGGTTCCGGTAAA 58.776 47.619 0.00 0.00 0.00 2.01
4704 5334 2.999485 ATCTCGCAGCAGCTCGTGT 61.999 57.895 12.18 2.06 39.10 4.49
4720 5350 2.352960 GAGGACGCTTTTGATCCACATC 59.647 50.000 0.00 0.00 34.73 3.06
4736 5366 4.333926 CGATCCAGAAAAAGATTGGAGGAC 59.666 45.833 0.00 0.00 43.71 3.85
4776 5406 4.827692 TGCCATTTAACAGTATCACGAGT 58.172 39.130 0.00 0.00 0.00 4.18
4809 5439 4.638421 CGGTATTCATCAAAAGGTGCCTAA 59.362 41.667 0.00 0.00 0.00 2.69
4812 5442 2.099098 CCGGTATTCATCAAAAGGTGCC 59.901 50.000 0.00 0.00 0.00 5.01
4813 5443 2.479560 GCCGGTATTCATCAAAAGGTGC 60.480 50.000 1.90 0.00 0.00 5.01
4814 5444 2.752354 TGCCGGTATTCATCAAAAGGTG 59.248 45.455 1.90 0.00 0.00 4.00
4831 5463 1.455408 GCGAAAGTTCCAAATTTGCCG 59.545 47.619 12.92 0.35 0.00 5.69
4845 5500 5.174035 CGATACCAATGTTCTCTAGCGAAAG 59.826 44.000 0.00 0.00 0.00 2.62
4851 5506 3.309388 CCGCGATACCAATGTTCTCTAG 58.691 50.000 8.23 0.00 0.00 2.43
4862 5517 3.536917 CTCAGGCCCGCGATACCA 61.537 66.667 8.23 0.00 0.00 3.25
4885 5540 5.108103 CGAAACGAGTTACTCCACTACAAAC 60.108 44.000 6.80 0.00 0.00 2.93
4886 5541 4.977963 CGAAACGAGTTACTCCACTACAAA 59.022 41.667 6.80 0.00 0.00 2.83
4889 5544 4.152607 ACGAAACGAGTTACTCCACTAC 57.847 45.455 6.80 0.00 0.00 2.73
4890 5545 3.814842 TGACGAAACGAGTTACTCCACTA 59.185 43.478 6.80 0.00 0.00 2.74
4891 5546 2.620115 TGACGAAACGAGTTACTCCACT 59.380 45.455 6.80 0.00 0.00 4.00
4892 5547 2.723143 GTGACGAAACGAGTTACTCCAC 59.277 50.000 6.80 3.64 0.00 4.02
4893 5548 2.358582 TGTGACGAAACGAGTTACTCCA 59.641 45.455 6.80 0.00 0.00 3.86
4894 5549 3.004024 TGTGACGAAACGAGTTACTCC 57.996 47.619 6.80 0.00 0.00 3.85
4895 5550 3.181543 GCATGTGACGAAACGAGTTACTC 60.182 47.826 1.64 1.64 0.00 2.59
4927 5583 6.697395 AGGTTTTTCTAGCGGCAAAATTATT 58.303 32.000 1.45 0.00 0.00 1.40
4977 5633 7.136119 TGAACGACTATGACAATTTTCCAAAC 58.864 34.615 0.00 0.00 0.00 2.93
4982 5638 9.478019 CAAGTATGAACGACTATGACAATTTTC 57.522 33.333 0.00 0.00 0.00 2.29
5018 5674 3.071786 ACATCACTCGTGAGCTAATCG 57.928 47.619 5.91 0.00 43.61 3.34
5142 5801 4.387026 AGATTGTGAAGGGGACATTCAA 57.613 40.909 0.00 0.00 38.34 2.69
5168 5833 7.463961 AGTACTATGCCAGCGTAATAACTAT 57.536 36.000 0.00 0.00 0.00 2.12
5172 5837 6.889301 ACTAGTACTATGCCAGCGTAATAA 57.111 37.500 2.33 0.00 0.00 1.40
5173 5838 8.571461 AATACTAGTACTATGCCAGCGTAATA 57.429 34.615 4.31 0.00 0.00 0.98
5174 5839 7.463961 AATACTAGTACTATGCCAGCGTAAT 57.536 36.000 4.31 0.00 0.00 1.89
5178 5843 6.910995 AGTAAATACTAGTACTATGCCAGCG 58.089 40.000 4.31 0.00 34.13 5.18
5191 5856 9.517609 AGTCGCTCACAAAATAGTAAATACTAG 57.482 33.333 6.48 0.00 41.62 2.57
5193 5858 9.298774 GTAGTCGCTCACAAAATAGTAAATACT 57.701 33.333 0.00 0.00 40.24 2.12
5255 5920 9.593134 GCTCTCTTCTTAGAAATTTGTCTATCA 57.407 33.333 0.00 0.00 30.25 2.15
5256 5921 9.593134 TGCTCTCTTCTTAGAAATTTGTCTATC 57.407 33.333 0.00 0.00 30.25 2.08
5257 5922 9.377312 GTGCTCTCTTCTTAGAAATTTGTCTAT 57.623 33.333 0.00 0.00 30.25 1.98
5258 5923 8.367911 TGTGCTCTCTTCTTAGAAATTTGTCTA 58.632 33.333 0.00 0.00 0.00 2.59
5259 5924 7.172361 GTGTGCTCTCTTCTTAGAAATTTGTCT 59.828 37.037 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.