Multiple sequence alignment - TraesCS5D01G380600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G380600 chr5D 100.000 7086 0 0 1 7086 450871853 450864768 0.000000e+00 13086
1 TraesCS5D01G380600 chr5D 82.550 447 34 18 4948 5377 484353978 484353559 3.140000e-93 353
2 TraesCS5D01G380600 chr5D 93.000 100 4 1 5522 5618 69456522 69456621 7.410000e-30 143
3 TraesCS5D01G380600 chr5B 90.883 3773 180 70 749 4421 551055321 551051613 0.000000e+00 4911
4 TraesCS5D01G380600 chr5B 88.558 2683 155 66 4501 7086 551051123 551048496 0.000000e+00 3114
5 TraesCS5D01G380600 chr5B 85.700 1000 51 34 4850 5838 705482191 705483109 0.000000e+00 970
6 TraesCS5D01G380600 chr5B 82.477 428 36 23 165 586 551055979 551055585 8.800000e-89 339
7 TraesCS5D01G380600 chr5B 93.750 208 5 2 5934 6134 705483110 705483316 8.930000e-79 305
8 TraesCS5D01G380600 chr5B 95.349 86 4 0 4416 4501 551051330 551051245 3.450000e-28 137
9 TraesCS5D01G380600 chr5B 91.139 79 6 1 4576 4653 532618466 532618544 9.720000e-19 106
10 TraesCS5D01G380600 chr5A 94.912 2339 70 18 1774 4090 570017773 570015462 0.000000e+00 3615
11 TraesCS5D01G380600 chr5A 89.663 2283 103 58 4416 6650 570014890 570012693 0.000000e+00 2785
12 TraesCS5D01G380600 chr5A 81.851 1653 124 83 1 1505 570020209 570018585 0.000000e+00 1229
13 TraesCS5D01G380600 chr5A 94.737 285 11 1 4141 4421 570015444 570015160 2.350000e-119 440
14 TraesCS5D01G380600 chr5A 77.003 287 27 17 1533 1787 570018069 570017790 2.070000e-25 128
15 TraesCS5D01G380600 chr5A 92.405 79 5 1 4576 4653 552967908 552967986 2.090000e-20 111
16 TraesCS5D01G380600 chr1A 94.050 958 25 5 3475 4421 587814276 587815212 0.000000e+00 1424
17 TraesCS5D01G380600 chr1A 86.000 1200 85 41 4420 5596 587815495 587816634 0.000000e+00 1208
18 TraesCS5D01G380600 chr7B 86.367 1313 58 49 4850 6134 559683491 559684710 0.000000e+00 1321
19 TraesCS5D01G380600 chr7B 86.025 322 17 17 4807 5123 62057514 62057812 3.190000e-83 320
20 TraesCS5D01G380600 chr7B 94.318 88 5 0 5525 5612 65397758 65397845 1.240000e-27 135
21 TraesCS5D01G380600 chr6A 96.522 460 13 2 2226 2684 616027093 616027550 0.000000e+00 758
22 TraesCS5D01G380600 chr6A 91.228 342 24 5 1884 2221 616026697 616027036 1.800000e-125 460
23 TraesCS5D01G380600 chr1B 96.087 460 15 2 2226 2684 50166151 50166608 0.000000e+00 747
24 TraesCS5D01G380600 chr1B 90.671 343 24 6 1884 2221 50165755 50166094 3.900000e-122 449
25 TraesCS5D01G380600 chr1B 85.714 322 18 12 4807 5123 410134942 410134644 1.480000e-81 315
26 TraesCS5D01G380600 chr1B 84.783 322 21 12 4807 5123 535801748 535801450 1.490000e-76 298
27 TraesCS5D01G380600 chr1B 84.688 320 21 14 4807 5121 93331410 93331706 1.930000e-75 294
28 TraesCS5D01G380600 chr1B 92.453 53 3 1 5326 5377 663287933 663287985 2.740000e-09 75
29 TraesCS5D01G380600 chr2B 95.000 460 20 2 2226 2684 61184079 61184536 0.000000e+00 719
30 TraesCS5D01G380600 chr2B 91.254 343 21 7 1884 2221 61183684 61184022 6.480000e-125 459
31 TraesCS5D01G380600 chr2B 85.714 322 18 12 4807 5123 692705453 692705751 1.480000e-81 315
32 TraesCS5D01G380600 chr2B 86.166 253 20 11 4683 4925 49186294 49186047 7.050000e-65 259
33 TraesCS5D01G380600 chr3A 93.782 386 23 1 3420 3805 42386079 42386463 4.770000e-161 579
34 TraesCS5D01G380600 chr3B 85.714 322 18 12 4807 5123 40894094 40894392 1.480000e-81 315
35 TraesCS5D01G380600 chr2A 84.713 157 16 5 5690 5841 81032874 81033027 4.430000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G380600 chr5D 450864768 450871853 7085 True 13086.00 13086 100.00000 1 7086 1 chr5D.!!$R1 7085
1 TraesCS5D01G380600 chr5B 551048496 551055979 7483 True 2125.25 4911 89.31675 165 7086 4 chr5B.!!$R1 6921
2 TraesCS5D01G380600 chr5B 705482191 705483316 1125 False 637.50 970 89.72500 4850 6134 2 chr5B.!!$F2 1284
3 TraesCS5D01G380600 chr5A 570012693 570020209 7516 True 1639.40 3615 87.63320 1 6650 5 chr5A.!!$R1 6649
4 TraesCS5D01G380600 chr1A 587814276 587816634 2358 False 1316.00 1424 90.02500 3475 5596 2 chr1A.!!$F1 2121
5 TraesCS5D01G380600 chr7B 559683491 559684710 1219 False 1321.00 1321 86.36700 4850 6134 1 chr7B.!!$F3 1284
6 TraesCS5D01G380600 chr6A 616026697 616027550 853 False 609.00 758 93.87500 1884 2684 2 chr6A.!!$F1 800
7 TraesCS5D01G380600 chr1B 50165755 50166608 853 False 598.00 747 93.37900 1884 2684 2 chr1B.!!$F3 800
8 TraesCS5D01G380600 chr2B 61183684 61184536 852 False 589.00 719 93.12700 1884 2684 2 chr2B.!!$F2 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 989 0.039798 TGTTTCGGTCGTCGGAGAAG 60.040 55.000 0.00 0.00 39.69 2.85 F
1582 2341 0.179134 GCAGCGAAGTGGTAGATCGT 60.179 55.000 0.00 0.00 38.75 3.73 F
2573 3472 0.179045 AGGTCTGCAGTCCACAACAC 60.179 55.000 28.19 10.63 0.00 3.32 F
2708 3611 0.242825 GTCTCGGACATGGAACGTCA 59.757 55.000 0.00 0.00 34.97 4.35 F
3610 4525 0.328258 TACAAGAGCCCCAAGAAGCC 59.672 55.000 0.00 0.00 0.00 4.35 F
5259 6664 1.273267 TGTCCCAGGCTATCTCTGTGT 60.273 52.381 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2255 3150 0.323957 GTCTACTGGGTGGTTGGTCC 59.676 60.000 0.00 0.0 0.00 4.46 R
2998 3910 1.400846 ACTCGCTCACCTACATACACG 59.599 52.381 0.00 0.0 0.00 4.49 R
4232 5147 0.251341 ATTTCGCTTCCTTGCCCAGT 60.251 50.000 0.00 0.0 0.00 4.00 R
4400 5334 2.206815 TGTGTGTTTGATGCAGCAAC 57.793 45.000 18.52 13.0 0.00 4.17 R
5324 6730 0.901124 ACGCTTCAGCTTCTCTCCAT 59.099 50.000 0.00 0.0 39.32 3.41 R
6288 7783 0.393820 TAACCAAGGTGTGACCGACC 59.606 55.000 0.00 0.0 44.90 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 1.446272 GTCCGCTACACTGTCCTGC 60.446 63.158 0.00 0.00 0.00 4.85
124 125 2.656646 CGCTACACTGTCCTGCCA 59.343 61.111 0.00 0.00 0.00 4.92
125 126 1.005037 CGCTACACTGTCCTGCCAA 60.005 57.895 0.00 0.00 0.00 4.52
126 127 0.602638 CGCTACACTGTCCTGCCAAA 60.603 55.000 0.00 0.00 0.00 3.28
129 130 0.109723 TACACTGTCCTGCCAAACCC 59.890 55.000 0.00 0.00 0.00 4.11
130 131 1.903404 CACTGTCCTGCCAAACCCC 60.903 63.158 0.00 0.00 0.00 4.95
131 132 2.084930 ACTGTCCTGCCAAACCCCT 61.085 57.895 0.00 0.00 0.00 4.79
133 134 1.774217 TGTCCTGCCAAACCCCTCT 60.774 57.895 0.00 0.00 0.00 3.69
147 149 1.421646 CCCCTCTCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
159 161 3.898509 CTCTCCCCTCTGCGCGAG 61.899 72.222 12.10 18.33 39.57 5.03
172 174 1.646540 CGCGAGCGAATCTCTCTCT 59.353 57.895 12.58 0.00 42.83 3.10
244 261 1.809547 CCACAAGTCACACACACACAA 59.190 47.619 0.00 0.00 0.00 3.33
271 288 1.221021 CTCGCTTTACACCCCTCCC 59.779 63.158 0.00 0.00 0.00 4.30
284 322 2.140224 CCCCTCCCTTCTCTCTCTCTA 58.860 57.143 0.00 0.00 0.00 2.43
285 323 2.158519 CCCCTCCCTTCTCTCTCTCTAC 60.159 59.091 0.00 0.00 0.00 2.59
364 402 4.570663 CGGCCACCGGAGATCGAC 62.571 72.222 9.46 0.00 44.15 4.20
409 467 0.988063 GAGAAACCCCAGCCTCTCTT 59.012 55.000 0.00 0.00 33.09 2.85
412 470 1.283321 GAAACCCCAGCCTCTCTTCAT 59.717 52.381 0.00 0.00 0.00 2.57
419 477 2.735772 GCCTCTCTTCATCCGCCCA 61.736 63.158 0.00 0.00 0.00 5.36
423 481 1.450312 CTCTTCATCCGCCCACCAC 60.450 63.158 0.00 0.00 0.00 4.16
424 482 2.438434 CTTCATCCGCCCACCACC 60.438 66.667 0.00 0.00 0.00 4.61
425 483 4.402528 TTCATCCGCCCACCACCG 62.403 66.667 0.00 0.00 0.00 4.94
435 493 4.108299 CACCACCGCCATGCCCTA 62.108 66.667 0.00 0.00 0.00 3.53
436 494 3.797353 ACCACCGCCATGCCCTAG 61.797 66.667 0.00 0.00 0.00 3.02
620 756 3.740397 CGCGGTCCACGGTGAGTA 61.740 66.667 10.28 0.00 44.51 2.59
645 785 3.182341 TCGTCTCCAAGGTTTTTCGAA 57.818 42.857 0.00 0.00 0.00 3.71
646 786 3.128349 TCGTCTCCAAGGTTTTTCGAAG 58.872 45.455 0.00 0.00 0.00 3.79
647 787 2.349532 CGTCTCCAAGGTTTTTCGAAGC 60.350 50.000 0.00 0.00 0.00 3.86
648 788 2.616842 GTCTCCAAGGTTTTTCGAAGCA 59.383 45.455 0.00 0.00 0.00 3.91
649 789 2.616842 TCTCCAAGGTTTTTCGAAGCAC 59.383 45.455 0.00 0.00 0.00 4.40
672 823 1.527311 GTGCCAAGTGTTTCTCTCGTC 59.473 52.381 0.00 0.00 0.00 4.20
677 828 3.372954 CAAGTGTTTCTCTCGTCTTCGT 58.627 45.455 0.00 0.00 38.33 3.85
679 830 2.030981 AGTGTTTCTCTCGTCTTCGTCC 60.031 50.000 0.00 0.00 38.33 4.79
728 881 1.797211 ATCCGTTCTCCGATCCTCGC 61.797 60.000 0.00 0.00 38.82 5.03
783 985 2.051076 CGTGTTTCGGTCGTCGGA 60.051 61.111 0.00 0.00 39.77 4.55
784 986 2.078914 CGTGTTTCGGTCGTCGGAG 61.079 63.158 0.00 0.00 39.77 4.63
785 987 1.283793 GTGTTTCGGTCGTCGGAGA 59.716 57.895 0.00 0.00 39.77 3.71
786 988 0.318107 GTGTTTCGGTCGTCGGAGAA 60.318 55.000 0.00 0.00 39.69 2.87
787 989 0.039798 TGTTTCGGTCGTCGGAGAAG 60.040 55.000 0.00 0.00 39.69 2.85
788 990 0.731855 GTTTCGGTCGTCGGAGAAGG 60.732 60.000 0.00 0.00 39.69 3.46
789 991 1.870055 TTTCGGTCGTCGGAGAAGGG 61.870 60.000 0.00 0.00 39.69 3.95
790 992 3.060615 CGGTCGTCGGAGAAGGGT 61.061 66.667 0.00 0.00 39.69 4.34
791 993 1.746615 CGGTCGTCGGAGAAGGGTA 60.747 63.158 0.00 0.00 39.69 3.69
792 994 1.805910 GGTCGTCGGAGAAGGGTAC 59.194 63.158 0.00 0.00 39.69 3.34
793 995 0.679321 GGTCGTCGGAGAAGGGTACT 60.679 60.000 0.00 0.00 39.69 2.73
800 1002 1.627297 GGAGAAGGGTACTGGCCTGG 61.627 65.000 14.82 4.64 0.00 4.45
803 1007 1.911702 GAAGGGTACTGGCCTGGGAC 61.912 65.000 14.82 10.99 0.00 4.46
893 1097 3.599792 CTGCCTGCAAAAGCGTCGG 62.600 63.158 0.00 0.00 0.00 4.79
903 1107 2.768833 AAAGCGTCGGGTTTTTCTTC 57.231 45.000 0.00 0.00 40.78 2.87
943 1147 2.744768 CGCTGCTTTTCGAGGCCTC 61.745 63.158 23.79 23.79 0.00 4.70
1054 1258 3.496131 CCACAATTCGGGTCGCCG 61.496 66.667 0.00 0.00 0.00 6.46
1139 1354 0.741915 TTTCTGTTTGGGTCGGCAAC 59.258 50.000 0.00 0.00 0.00 4.17
1178 1393 4.120589 GGCTAGGGTTTTACTCTTCGATG 58.879 47.826 0.00 0.00 27.79 3.84
1181 1396 3.939066 AGGGTTTTACTCTTCGATGTGG 58.061 45.455 5.51 0.39 0.00 4.17
1182 1397 3.326880 AGGGTTTTACTCTTCGATGTGGT 59.673 43.478 5.51 5.48 0.00 4.16
1183 1398 4.070009 GGGTTTTACTCTTCGATGTGGTT 58.930 43.478 5.51 0.00 0.00 3.67
1184 1399 4.153655 GGGTTTTACTCTTCGATGTGGTTC 59.846 45.833 5.51 0.00 0.00 3.62
1185 1400 4.153655 GGTTTTACTCTTCGATGTGGTTCC 59.846 45.833 5.51 0.00 0.00 3.62
1191 1406 2.233922 TCTTCGATGTGGTTCCTTCCTC 59.766 50.000 0.00 0.00 0.00 3.71
1219 1434 5.873211 TCTTCGATTCGATTCGATTTGAG 57.127 39.130 27.13 21.63 46.55 3.02
1239 1454 1.654220 GGCAAGCTTTCGCAGTTCA 59.346 52.632 10.58 0.00 39.10 3.18
1266 1510 1.068816 GGTTAATCCGTGCGCTTTTGT 60.069 47.619 9.73 0.00 0.00 2.83
1267 1511 2.606065 GGTTAATCCGTGCGCTTTTGTT 60.606 45.455 9.73 0.84 0.00 2.83
1268 1512 3.047093 GTTAATCCGTGCGCTTTTGTTT 58.953 40.909 9.73 0.00 0.00 2.83
1269 1513 1.766069 AATCCGTGCGCTTTTGTTTC 58.234 45.000 9.73 0.00 0.00 2.78
1370 1628 2.189521 CCCCATGGTACGTGCCTC 59.810 66.667 23.67 0.00 0.00 4.70
1520 2252 3.063180 TGTGTGTTTAACGTTACGGTTGG 59.937 43.478 7.70 0.00 0.00 3.77
1521 2253 3.308323 GTGTGTTTAACGTTACGGTTGGA 59.692 43.478 7.70 0.00 0.00 3.53
1522 2254 3.555139 TGTGTTTAACGTTACGGTTGGAG 59.445 43.478 7.70 0.00 0.00 3.86
1523 2255 3.059665 GTGTTTAACGTTACGGTTGGAGG 60.060 47.826 7.70 0.00 0.00 4.30
1524 2256 3.130633 GTTTAACGTTACGGTTGGAGGT 58.869 45.455 7.70 0.00 0.00 3.85
1525 2257 3.467374 TTAACGTTACGGTTGGAGGTT 57.533 42.857 7.70 0.00 0.00 3.50
1526 2258 1.585297 AACGTTACGGTTGGAGGTTG 58.415 50.000 10.20 0.00 0.00 3.77
1527 2259 0.752054 ACGTTACGGTTGGAGGTTGA 59.248 50.000 10.20 0.00 0.00 3.18
1528 2260 1.345415 ACGTTACGGTTGGAGGTTGAT 59.655 47.619 10.20 0.00 0.00 2.57
1531 2286 2.925563 GTTACGGTTGGAGGTTGATACG 59.074 50.000 0.00 0.00 0.00 3.06
1542 2297 1.856597 GGTTGATACGACGGTGTATGC 59.143 52.381 6.55 1.04 35.24 3.14
1580 2339 1.135139 TCAGCAGCGAAGTGGTAGATC 59.865 52.381 0.00 0.00 0.00 2.75
1582 2341 0.179134 GCAGCGAAGTGGTAGATCGT 60.179 55.000 0.00 0.00 38.75 3.73
1584 2343 2.607187 CAGCGAAGTGGTAGATCGTTT 58.393 47.619 0.00 0.00 38.75 3.60
1585 2344 2.345641 CAGCGAAGTGGTAGATCGTTTG 59.654 50.000 0.00 0.00 38.75 2.93
1617 2380 2.478894 AGTTCCGTGTTAATGCGTTCTG 59.521 45.455 0.00 0.00 0.00 3.02
1624 2387 4.156182 GTGTTAATGCGTTCTGGCTTAAC 58.844 43.478 0.00 0.00 37.22 2.01
1630 2393 4.678509 TGCGTTCTGGCTTAACTAATTG 57.321 40.909 0.00 0.00 0.00 2.32
1642 2437 7.038048 GGCTTAACTAATTGACGTTAGTAGGT 58.962 38.462 9.77 6.50 42.48 3.08
1649 2444 8.960591 ACTAATTGACGTTAGTAGGTAGCTAAA 58.039 33.333 2.58 0.00 41.74 1.85
1650 2445 9.793252 CTAATTGACGTTAGTAGGTAGCTAAAA 57.207 33.333 2.58 0.00 31.22 1.52
1651 2446 8.699283 AATTGACGTTAGTAGGTAGCTAAAAG 57.301 34.615 2.58 0.91 31.22 2.27
1654 2449 8.511604 TGACGTTAGTAGGTAGCTAAAAGTAT 57.488 34.615 2.58 0.00 31.22 2.12
1656 2451 9.871299 GACGTTAGTAGGTAGCTAAAAGTATAC 57.129 37.037 2.58 0.00 31.22 1.47
1668 2463 8.921353 AGCTAAAAGTATACTAGAATCGGAGA 57.079 34.615 5.65 0.00 45.75 3.71
1669 2464 9.005777 AGCTAAAAGTATACTAGAATCGGAGAG 57.994 37.037 5.65 0.00 43.63 3.20
1674 2469 6.469410 AGTATACTAGAATCGGAGAGTGGAG 58.531 44.000 2.75 0.00 43.63 3.86
1701 2499 4.301072 TTCGGATGGAAAAGATGGAAGT 57.699 40.909 0.00 0.00 0.00 3.01
1702 2500 3.873910 TCGGATGGAAAAGATGGAAGTC 58.126 45.455 0.00 0.00 0.00 3.01
1704 2502 8.664610 TTTCGGATGGAAAAGATGGAAGTCCA 62.665 42.308 1.71 1.71 45.02 4.02
1723 2521 2.355756 CCAACTAGTGCATGCATGGTAC 59.644 50.000 25.64 16.78 0.00 3.34
1724 2522 3.273434 CAACTAGTGCATGCATGGTACT 58.727 45.455 25.64 21.96 35.36 2.73
1737 2536 0.186873 TGGTACTAGATCCGGACCCC 59.813 60.000 6.12 0.00 0.00 4.95
1764 2563 5.976458 TGCTAAAATGGAATGTGATTTCCC 58.024 37.500 1.03 0.00 43.86 3.97
1767 2566 6.313658 GCTAAAATGGAATGTGATTTCCCAAC 59.686 38.462 1.03 0.00 43.86 3.77
1915 2753 1.100510 GATGATGCATGCACCAGTGT 58.899 50.000 25.37 3.91 0.00 3.55
1985 2825 6.734104 CAGTGCTAAATCTGCTTAAGAGTT 57.266 37.500 6.67 0.00 44.96 3.01
1986 2826 7.834068 CAGTGCTAAATCTGCTTAAGAGTTA 57.166 36.000 6.67 0.00 41.30 2.24
1987 2827 8.256611 CAGTGCTAAATCTGCTTAAGAGTTAA 57.743 34.615 6.67 0.00 43.02 2.01
1988 2828 8.386606 CAGTGCTAAATCTGCTTAAGAGTTAAG 58.613 37.037 6.67 2.60 43.02 1.85
2143 2986 5.504010 CGAATACTTATGTTGCGGATGCTTT 60.504 40.000 0.00 0.00 43.34 3.51
2199 3042 4.818546 AGTTGTCATTGTCCAAAGTCTGAG 59.181 41.667 0.00 0.00 0.00 3.35
2239 3134 0.820074 TTGGCTACACACAAACCCCG 60.820 55.000 0.00 0.00 0.00 5.73
2255 3150 1.339438 CCCCGAATATGGAGCAGATGG 60.339 57.143 0.00 0.00 0.00 3.51
2259 3154 2.613977 CGAATATGGAGCAGATGGGACC 60.614 54.545 0.00 0.00 0.00 4.46
2380 3275 3.862845 GTGTGGTGTTGAAATGTGTTTCC 59.137 43.478 0.00 0.00 42.44 3.13
2386 3281 5.983118 GGTGTTGAAATGTGTTTCCCTTTAG 59.017 40.000 0.00 0.00 42.44 1.85
2468 3367 7.279758 CCACTGTTCTCCTTGATTCTCTTTATC 59.720 40.741 0.00 0.00 0.00 1.75
2573 3472 0.179045 AGGTCTGCAGTCCACAACAC 60.179 55.000 28.19 10.63 0.00 3.32
2707 3610 0.458025 GGTCTCGGACATGGAACGTC 60.458 60.000 0.00 0.00 33.68 4.34
2708 3611 0.242825 GTCTCGGACATGGAACGTCA 59.757 55.000 0.00 0.00 34.97 4.35
2742 3649 2.363306 TCCTGTTCATGCCAAGTTGT 57.637 45.000 1.45 0.00 0.00 3.32
2743 3650 2.665165 TCCTGTTCATGCCAAGTTGTT 58.335 42.857 1.45 0.00 0.00 2.83
2744 3651 2.361757 TCCTGTTCATGCCAAGTTGTTG 59.638 45.455 1.45 0.00 0.00 3.33
2745 3652 2.101249 CCTGTTCATGCCAAGTTGTTGT 59.899 45.455 1.45 0.00 30.95 3.32
2998 3910 2.872858 GTTTCTTATGTGATCTCCGGCC 59.127 50.000 0.00 0.00 0.00 6.13
3299 4211 4.116328 TCGTCGCCTGAAGCTCCG 62.116 66.667 0.00 0.00 40.39 4.63
3610 4525 0.328258 TACAAGAGCCCCAAGAAGCC 59.672 55.000 0.00 0.00 0.00 4.35
3833 4748 3.136123 CTCAAGCACATGGCCGGG 61.136 66.667 2.18 0.00 46.50 5.73
4086 5001 8.421249 TGATGTCAAAAGGTATCCATTTTTCT 57.579 30.769 0.00 0.00 0.00 2.52
4087 5002 8.306038 TGATGTCAAAAGGTATCCATTTTTCTG 58.694 33.333 0.00 0.00 0.00 3.02
4088 5003 7.831691 TGTCAAAAGGTATCCATTTTTCTGA 57.168 32.000 0.00 0.00 0.00 3.27
4089 5004 7.657336 TGTCAAAAGGTATCCATTTTTCTGAC 58.343 34.615 0.00 0.00 0.00 3.51
4090 5005 6.801862 GTCAAAAGGTATCCATTTTTCTGACG 59.198 38.462 0.00 0.00 0.00 4.35
4092 5007 5.880054 AAGGTATCCATTTTTCTGACGTG 57.120 39.130 0.00 0.00 0.00 4.49
4093 5008 4.906618 AGGTATCCATTTTTCTGACGTGT 58.093 39.130 0.00 0.00 0.00 4.49
4094 5009 4.935808 AGGTATCCATTTTTCTGACGTGTC 59.064 41.667 0.00 0.00 0.00 3.67
4095 5010 4.094442 GGTATCCATTTTTCTGACGTGTCC 59.906 45.833 0.00 0.00 0.00 4.02
4096 5011 2.500229 TCCATTTTTCTGACGTGTCCC 58.500 47.619 0.00 0.00 0.00 4.46
4097 5012 1.539827 CCATTTTTCTGACGTGTCCCC 59.460 52.381 0.00 0.00 0.00 4.81
4098 5013 2.226330 CATTTTTCTGACGTGTCCCCA 58.774 47.619 0.00 0.00 0.00 4.96
4099 5014 2.649531 TTTTTCTGACGTGTCCCCAT 57.350 45.000 0.00 0.00 0.00 4.00
4100 5015 2.649531 TTTTCTGACGTGTCCCCATT 57.350 45.000 0.00 0.00 0.00 3.16
4101 5016 2.649531 TTTCTGACGTGTCCCCATTT 57.350 45.000 0.00 0.00 0.00 2.32
4102 5017 2.649531 TTCTGACGTGTCCCCATTTT 57.350 45.000 0.00 0.00 0.00 1.82
4103 5018 2.649531 TCTGACGTGTCCCCATTTTT 57.350 45.000 0.00 0.00 0.00 1.94
4104 5019 2.500229 TCTGACGTGTCCCCATTTTTC 58.500 47.619 0.00 0.00 0.00 2.29
4182 5097 2.903135 TGATTTCCAACATTGTTCCCCC 59.097 45.455 0.00 0.00 0.00 5.40
4211 5126 2.655090 TGTCAAGGAACATGGAGCAA 57.345 45.000 0.00 0.00 0.00 3.91
4232 5147 4.974645 ACTGAGTTCTAACATGGTGGAA 57.025 40.909 5.29 5.29 0.00 3.53
4336 5269 3.134804 CCTGTCGATTTCCCTATCCAAGT 59.865 47.826 0.00 0.00 0.00 3.16
4358 5291 6.241645 AGTATTTCCCTCTGTTCCTCTTTTG 58.758 40.000 0.00 0.00 0.00 2.44
4400 5334 9.097257 AGGTGATTTCAAACATACAAAGTTTTG 57.903 29.630 3.17 3.17 43.62 2.44
4656 6005 4.755123 AGGTGTCGTCTTTGAAGGTAATTG 59.245 41.667 0.00 0.00 0.00 2.32
4658 6007 5.411669 GGTGTCGTCTTTGAAGGTAATTGAT 59.588 40.000 0.00 0.00 0.00 2.57
4681 6030 6.560253 TTGCCTTCAGAAATTCTAACAGTC 57.440 37.500 0.00 0.00 0.00 3.51
4715 6064 4.749245 AGCAAACTGTACATGTTAGTGC 57.251 40.909 2.30 17.74 33.71 4.40
4717 6066 4.452455 AGCAAACTGTACATGTTAGTGCTC 59.548 41.667 20.10 2.76 37.06 4.26
4726 6077 6.924612 TGTACATGTTAGTGCTCGAGTTTTTA 59.075 34.615 15.13 0.00 0.00 1.52
4770 6123 8.885494 TGAACCATTTTGATCCTTTTTAACTG 57.115 30.769 0.00 0.00 0.00 3.16
4772 6125 5.925969 ACCATTTTGATCCTTTTTAACTGCG 59.074 36.000 0.00 0.00 0.00 5.18
4773 6126 5.348451 CCATTTTGATCCTTTTTAACTGCGG 59.652 40.000 0.00 0.00 0.00 5.69
4774 6127 5.523438 TTTTGATCCTTTTTAACTGCGGT 57.477 34.783 0.00 0.00 0.00 5.68
4775 6128 4.497473 TTGATCCTTTTTAACTGCGGTG 57.503 40.909 0.00 0.00 0.00 4.94
4776 6129 2.227865 TGATCCTTTTTAACTGCGGTGC 59.772 45.455 0.00 0.00 0.00 5.01
4934 6302 5.616270 TGAAGGTACACTCATGTTGCTAAA 58.384 37.500 0.00 0.00 40.48 1.85
4943 6311 6.435277 ACACTCATGTTGCTAAATGAATTCCT 59.565 34.615 2.27 0.00 34.46 3.36
4975 6350 2.250031 ACCACCATTGCATTGTGATGT 58.750 42.857 11.16 0.00 35.63 3.06
4976 6351 2.231964 ACCACCATTGCATTGTGATGTC 59.768 45.455 11.16 0.00 35.63 3.06
4977 6352 2.494471 CCACCATTGCATTGTGATGTCT 59.506 45.455 11.16 0.00 35.63 3.41
4978 6353 3.695556 CCACCATTGCATTGTGATGTCTA 59.304 43.478 11.16 0.00 35.63 2.59
4979 6354 4.340097 CCACCATTGCATTGTGATGTCTAT 59.660 41.667 11.16 0.00 35.63 1.98
5020 6400 8.954350 CATGAAGGTTCTTAAGAATGTCTTGAT 58.046 33.333 20.41 18.12 37.29 2.57
5023 6403 9.617975 GAAGGTTCTTAAGAATGTCTTGATTTG 57.382 33.333 20.41 0.00 37.29 2.32
5059 6440 6.045318 TCTCTGCTTATTCTGCTGTAATGTC 58.955 40.000 0.00 0.00 0.00 3.06
5076 6457 3.751479 TGTCTGCAGTACAATGACACT 57.249 42.857 14.67 0.00 30.74 3.55
5244 6649 5.755861 GCATAGAATTACTGAACTCTGTCCC 59.244 44.000 0.00 0.00 0.00 4.46
5254 6659 2.080654 ACTCTGTCCCAGGCTATCTC 57.919 55.000 0.00 0.00 31.51 2.75
5258 6663 1.411977 CTGTCCCAGGCTATCTCTGTG 59.588 57.143 0.00 0.00 0.00 3.66
5259 6664 1.273267 TGTCCCAGGCTATCTCTGTGT 60.273 52.381 0.00 0.00 0.00 3.72
5276 6682 7.556844 TCTCTGTGTTCCTGGAGTAATAAATC 58.443 38.462 0.00 0.00 0.00 2.17
5294 6700 8.776376 AATAAATCGCTGTTTTCCATTTTGAT 57.224 26.923 0.00 0.00 0.00 2.57
5341 6747 4.009002 AGAAAATGGAGAGAAGCTGAAGC 58.991 43.478 0.00 0.00 42.49 3.86
5412 6824 2.488153 GCTAGATTTTGGTGGTGGTGAC 59.512 50.000 0.00 0.00 0.00 3.67
5413 6825 1.995376 AGATTTTGGTGGTGGTGACC 58.005 50.000 0.00 0.00 43.48 4.02
5421 6833 2.348998 GGTGGTGACCAGAGCCAG 59.651 66.667 3.58 0.00 42.59 4.85
5422 6834 2.217038 GGTGGTGACCAGAGCCAGA 61.217 63.158 3.58 0.00 42.59 3.86
5423 6835 1.294780 GTGGTGACCAGAGCCAGAG 59.705 63.158 3.58 0.00 32.34 3.35
5424 6836 2.267324 GGTGACCAGAGCCAGAGC 59.733 66.667 0.00 0.00 40.32 4.09
5474 6898 1.752501 CGTTCAGATGTTAGCGCCGG 61.753 60.000 2.29 0.00 0.00 6.13
5490 6929 4.516195 GGCGAGAAGAGGACGGCC 62.516 72.222 0.00 0.00 44.46 6.13
5655 7100 0.250858 CAGTTGAGGTGGTGATGGCA 60.251 55.000 0.00 0.00 0.00 4.92
5789 7246 4.021925 ACAGCCCCTCTTCACCGC 62.022 66.667 0.00 0.00 0.00 5.68
5790 7247 4.020617 CAGCCCCTCTTCACCGCA 62.021 66.667 0.00 0.00 0.00 5.69
5791 7248 3.710722 AGCCCCTCTTCACCGCAG 61.711 66.667 0.00 0.00 0.00 5.18
5879 7342 2.433970 CCTCTTCAGTCTTCATCTCCCC 59.566 54.545 0.00 0.00 0.00 4.81
5880 7343 2.100584 CTCTTCAGTCTTCATCTCCCCG 59.899 54.545 0.00 0.00 0.00 5.73
5883 7346 1.306141 AGTCTTCATCTCCCCGCCA 60.306 57.895 0.00 0.00 0.00 5.69
5884 7347 0.909610 AGTCTTCATCTCCCCGCCAA 60.910 55.000 0.00 0.00 0.00 4.52
5885 7348 0.035439 GTCTTCATCTCCCCGCCAAA 60.035 55.000 0.00 0.00 0.00 3.28
5886 7349 0.918983 TCTTCATCTCCCCGCCAAAT 59.081 50.000 0.00 0.00 0.00 2.32
6287 7782 4.948608 TCTCGATTACAGTCAGTCAGTC 57.051 45.455 0.00 0.00 0.00 3.51
6288 7783 3.371285 TCTCGATTACAGTCAGTCAGTCG 59.629 47.826 0.00 0.00 32.91 4.18
6289 7784 2.418976 TCGATTACAGTCAGTCAGTCGG 59.581 50.000 0.00 0.00 32.67 4.79
6290 7785 2.161808 CGATTACAGTCAGTCAGTCGGT 59.838 50.000 0.00 0.00 0.00 4.69
6291 7786 3.728268 CGATTACAGTCAGTCAGTCGGTC 60.728 52.174 0.00 0.00 0.00 4.79
6292 7787 1.154197 TACAGTCAGTCAGTCGGTCG 58.846 55.000 0.00 0.00 0.00 4.79
6293 7788 1.210413 CAGTCAGTCAGTCGGTCGG 59.790 63.158 0.00 0.00 0.00 4.79
6294 7789 1.228184 AGTCAGTCAGTCGGTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
6424 7940 2.180017 GCTCGCCAATGCCTGTTG 59.820 61.111 0.00 0.00 0.00 3.33
6425 7941 2.334946 GCTCGCCAATGCCTGTTGA 61.335 57.895 0.00 0.00 0.00 3.18
6434 7950 2.119801 ATGCCTGTTGATGACTCCAC 57.880 50.000 0.00 0.00 0.00 4.02
6515 8037 0.033601 TGTGTGTTTTGTGGGCTCCT 60.034 50.000 0.00 0.00 0.00 3.69
6571 8093 8.537049 TGATTTATTTTTCATTTCCTGCTGTG 57.463 30.769 0.00 0.00 0.00 3.66
6590 8112 3.243535 TGTGCAGCTATATTCTCGAGTGG 60.244 47.826 13.13 0.00 0.00 4.00
6606 8128 2.356992 TGGTGACACCGTGCATCTA 58.643 52.632 19.67 0.00 42.58 1.98
6635 8157 5.163652 CGATCACACATTCACACCTACTAGA 60.164 44.000 0.00 0.00 0.00 2.43
6666 8188 9.653287 TTGAATTCTATGTACACCTCAAACTAG 57.347 33.333 7.05 0.00 0.00 2.57
6688 8214 8.964772 ACTAGGTAGAAACACATATAAACTCGT 58.035 33.333 0.00 0.00 0.00 4.18
6730 8271 0.537371 AATGGCATTACCGCTAGCCC 60.537 55.000 11.81 2.86 46.45 5.19
6731 8272 1.418908 ATGGCATTACCGCTAGCCCT 61.419 55.000 9.66 0.00 46.45 5.19
6733 8274 1.301795 GCATTACCGCTAGCCCTCC 60.302 63.158 9.66 0.00 0.00 4.30
6734 8275 2.040009 GCATTACCGCTAGCCCTCCA 62.040 60.000 9.66 0.00 0.00 3.86
6735 8276 0.687354 CATTACCGCTAGCCCTCCAT 59.313 55.000 9.66 0.00 0.00 3.41
6738 8279 0.827925 TACCGCTAGCCCTCCATCTG 60.828 60.000 9.66 0.00 0.00 2.90
6741 8282 0.465705 CGCTAGCCCTCCATCTGAAA 59.534 55.000 9.66 0.00 0.00 2.69
6744 8285 3.560105 GCTAGCCCTCCATCTGAAAATT 58.440 45.455 2.29 0.00 0.00 1.82
6746 8287 4.759183 GCTAGCCCTCCATCTGAAAATTAG 59.241 45.833 2.29 0.00 0.00 1.73
6749 8290 4.723789 AGCCCTCCATCTGAAAATTAGAGA 59.276 41.667 0.00 0.00 0.00 3.10
6762 8303 7.394016 TGAAAATTAGAGAGGAGTGCAATGTA 58.606 34.615 0.00 0.00 0.00 2.29
6769 8310 4.036518 AGAGGAGTGCAATGTAGATCCTT 58.963 43.478 6.51 0.00 37.30 3.36
6772 8313 4.225942 AGGAGTGCAATGTAGATCCTTGAA 59.774 41.667 0.00 0.00 33.37 2.69
6774 8315 5.591877 GGAGTGCAATGTAGATCCTTGAAAT 59.408 40.000 0.00 0.00 0.00 2.17
6790 8332 8.044060 TCCTTGAAATATTTCAGTGATGTCAC 57.956 34.615 25.58 5.01 46.68 3.67
6828 8370 2.572191 AAAATCATCATGCACGCCTG 57.428 45.000 0.00 0.00 0.00 4.85
6829 8371 1.466856 AAATCATCATGCACGCCTGT 58.533 45.000 0.00 0.00 0.00 4.00
6847 8393 4.695455 GCCTGTAAAGTGCAATAAGACTCA 59.305 41.667 0.00 0.00 0.00 3.41
6851 8397 2.789409 AGTGCAATAAGACTCACCCC 57.211 50.000 0.00 0.00 0.00 4.95
6857 8403 3.007635 CAATAAGACTCACCCCGTTTCC 58.992 50.000 0.00 0.00 0.00 3.13
6873 8419 3.131478 CCGCCTTACCGCTTTGGG 61.131 66.667 0.00 0.00 44.64 4.12
6874 8420 2.046700 CGCCTTACCGCTTTGGGA 60.047 61.111 0.00 0.00 44.64 4.37
6876 8422 1.029947 CGCCTTACCGCTTTGGGATT 61.030 55.000 0.00 0.00 44.64 3.01
6877 8423 1.182667 GCCTTACCGCTTTGGGATTT 58.817 50.000 0.00 0.00 44.64 2.17
6886 8432 3.618150 CCGCTTTGGGATTTTAGCATTTG 59.382 43.478 0.00 0.00 33.29 2.32
6888 8434 3.374988 GCTTTGGGATTTTAGCATTTGGC 59.625 43.478 0.00 0.00 45.30 4.52
6900 8446 1.068055 GCATTTGGCACCTTCTCACTG 60.068 52.381 0.00 0.00 43.97 3.66
6942 8488 2.159819 ATCTCGTGCTCGCACACCTT 62.160 55.000 20.54 1.48 46.47 3.50
6943 8489 1.956170 CTCGTGCTCGCACACCTTT 60.956 57.895 20.54 0.00 46.47 3.11
6944 8490 2.162921 CTCGTGCTCGCACACCTTTG 62.163 60.000 20.54 4.70 46.47 2.77
6976 8522 1.356624 GCGCTTGCCTAATTCGCAT 59.643 52.632 0.00 0.00 44.50 4.73
6993 8539 2.657184 GCATTGGTTGTTAACACCGAC 58.343 47.619 8.07 3.99 0.00 4.79
7042 8588 1.303236 CCCCACCGCATCTTTGACA 60.303 57.895 0.00 0.00 0.00 3.58
7051 8597 2.726989 CGCATCTTTGACATGTCTGTGC 60.727 50.000 25.55 22.66 35.14 4.57
7075 8621 1.467678 AAGGATCGAGATGGCCCGAG 61.468 60.000 0.00 0.00 38.25 4.63
7077 8623 1.903890 GATCGAGATGGCCCGAGGA 60.904 63.158 0.00 0.00 38.25 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 2.107366 GAGAGAGAGAGAGGGGTTTGG 58.893 57.143 0.00 0.00 0.00 3.28
124 125 2.926329 AGAGAGAGAGAGAGAGGGGTTT 59.074 50.000 0.00 0.00 0.00 3.27
125 126 2.509964 GAGAGAGAGAGAGAGAGGGGTT 59.490 54.545 0.00 0.00 0.00 4.11
126 127 2.127708 GAGAGAGAGAGAGAGAGGGGT 58.872 57.143 0.00 0.00 0.00 4.95
129 130 1.421646 GGGGAGAGAGAGAGAGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
130 131 2.370189 GAGGGGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
131 132 2.022035 AGAGGGGAGAGAGAGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
133 134 2.126882 CAGAGGGGAGAGAGAGAGAGA 58.873 57.143 0.00 0.00 0.00 3.10
159 161 2.098934 TGCAGAGAAGAGAGAGATTCGC 59.901 50.000 0.00 0.00 0.00 4.70
172 174 2.752358 CCTGTGGCCTGCAGAGAA 59.248 61.111 23.42 0.00 36.12 2.87
244 261 0.390124 TGTAAAGCGAGGGACGTGTT 59.610 50.000 0.00 0.00 44.60 3.32
271 288 4.260620 GCTTGCTACGTAGAGAGAGAGAAG 60.261 50.000 26.53 13.03 0.00 2.85
284 322 2.009042 GCAGGATCTTGCTTGCTACGT 61.009 52.381 21.61 0.00 40.89 3.57
285 323 0.654683 GCAGGATCTTGCTTGCTACG 59.345 55.000 21.61 0.00 40.89 3.51
403 461 1.144936 GGTGGGCGGATGAAGAGAG 59.855 63.158 0.00 0.00 0.00 3.20
404 462 1.612146 TGGTGGGCGGATGAAGAGA 60.612 57.895 0.00 0.00 0.00 3.10
419 477 3.797353 CTAGGGCATGGCGGTGGT 61.797 66.667 13.76 0.00 0.00 4.16
423 481 3.241530 TAGGCTAGGGCATGGCGG 61.242 66.667 13.76 7.13 40.87 6.13
424 482 2.345244 CTAGGCTAGGGCATGGCG 59.655 66.667 13.92 0.30 40.87 5.69
428 486 1.910772 CGAGGCTAGGCTAGGGCAT 60.911 63.158 20.27 8.15 40.87 4.40
429 487 2.521950 CGAGGCTAGGCTAGGGCA 60.522 66.667 20.27 0.00 40.87 5.36
431 489 2.521950 TGCGAGGCTAGGCTAGGG 60.522 66.667 24.36 15.57 0.00 3.53
432 490 2.731374 GTGCGAGGCTAGGCTAGG 59.269 66.667 24.36 17.79 0.00 3.02
433 491 2.731374 GGTGCGAGGCTAGGCTAG 59.269 66.667 20.27 20.20 0.00 3.42
434 492 2.838225 GGGTGCGAGGCTAGGCTA 60.838 66.667 20.27 0.06 0.00 3.93
436 494 3.622060 TTTGGGTGCGAGGCTAGGC 62.622 63.158 8.55 8.55 0.00 3.93
620 756 3.277142 AAAACCTTGGAGACGAACACT 57.723 42.857 0.00 0.00 0.00 3.55
647 787 1.654137 GAAACACTTGGCACGCGTG 60.654 57.895 34.01 34.01 37.19 5.34
648 788 1.772063 GAGAAACACTTGGCACGCGT 61.772 55.000 5.58 5.58 0.00 6.01
649 789 1.082756 GAGAAACACTTGGCACGCG 60.083 57.895 3.53 3.53 0.00 6.01
672 823 2.022129 AGCAGAAACGCGGACGAAG 61.022 57.895 12.47 0.00 43.93 3.79
677 828 2.280797 AAGCAGCAGAAACGCGGA 60.281 55.556 12.47 0.00 36.85 5.54
679 830 1.131420 GAGAAGCAGCAGAAACGCG 59.869 57.895 3.53 3.53 36.85 6.01
728 881 4.862092 AGAGACCGATGCTGCGCG 62.862 66.667 0.00 0.00 0.00 6.86
744 897 2.880890 CAAGAGACCACAGGAAAACCAG 59.119 50.000 0.00 0.00 0.00 4.00
783 985 1.616628 CCCAGGCCAGTACCCTTCT 60.617 63.158 5.01 0.00 0.00 2.85
784 986 1.615424 TCCCAGGCCAGTACCCTTC 60.615 63.158 5.01 0.00 0.00 3.46
785 987 1.923909 GTCCCAGGCCAGTACCCTT 60.924 63.158 5.01 0.00 0.00 3.95
786 988 2.285442 GTCCCAGGCCAGTACCCT 60.285 66.667 5.01 0.00 0.00 4.34
787 989 3.408853 GGTCCCAGGCCAGTACCC 61.409 72.222 5.01 0.00 0.00 3.69
788 990 2.001269 ATGGTCCCAGGCCAGTACC 61.001 63.158 5.01 7.78 39.65 3.34
789 991 1.224592 CATGGTCCCAGGCCAGTAC 59.775 63.158 5.01 0.00 39.65 2.73
790 992 2.000701 CCATGGTCCCAGGCCAGTA 61.001 63.158 5.01 0.00 39.65 2.74
791 993 3.341629 CCATGGTCCCAGGCCAGT 61.342 66.667 5.01 0.00 39.65 4.00
792 994 4.828296 GCCATGGTCCCAGGCCAG 62.828 72.222 14.67 0.00 42.58 4.85
893 1097 4.848562 ACCGAAATGGAGAAGAAAAACC 57.151 40.909 0.00 0.00 42.00 3.27
900 1104 2.200373 ACCCAACCGAAATGGAGAAG 57.800 50.000 3.07 0.00 42.00 2.85
903 1107 3.554129 GGAAAAACCCAACCGAAATGGAG 60.554 47.826 3.07 0.00 42.00 3.86
943 1147 0.701147 AGGCAGAAGAAAAGAGGGGG 59.299 55.000 0.00 0.00 0.00 5.40
984 1188 1.471676 CGCATGTGGTAGTTCCTCCTC 60.472 57.143 0.00 0.00 37.07 3.71
985 1189 0.537188 CGCATGTGGTAGTTCCTCCT 59.463 55.000 0.00 0.00 37.07 3.69
986 1190 1.090052 GCGCATGTGGTAGTTCCTCC 61.090 60.000 8.62 0.00 37.07 4.30
1054 1258 3.497297 AAAATTACGGGGCAAACGATC 57.503 42.857 0.00 0.00 34.93 3.69
1077 1281 0.034380 TGTCCCAAAACACAACGGGA 60.034 50.000 0.00 0.00 45.66 5.14
1083 1293 2.551287 CGGGTAGATGTCCCAAAACACA 60.551 50.000 1.91 0.00 44.81 3.72
1139 1354 3.570638 CGATGCTCCTTGCTGCCG 61.571 66.667 0.00 0.00 43.37 5.69
1178 1393 5.351740 CGAAGAATTAAGAGGAAGGAACCAC 59.648 44.000 0.00 0.00 0.00 4.16
1181 1396 7.254151 CGAATCGAAGAATTAAGAGGAAGGAAC 60.254 40.741 0.00 0.00 43.58 3.62
1182 1397 6.757010 CGAATCGAAGAATTAAGAGGAAGGAA 59.243 38.462 0.00 0.00 43.58 3.36
1183 1398 6.096423 TCGAATCGAAGAATTAAGAGGAAGGA 59.904 38.462 1.57 0.00 43.58 3.36
1184 1399 6.273825 TCGAATCGAAGAATTAAGAGGAAGG 58.726 40.000 1.57 0.00 43.58 3.46
1185 1400 7.938563 ATCGAATCGAAGAATTAAGAGGAAG 57.061 36.000 10.12 0.00 43.58 3.46
1239 1454 1.435577 GCACGGATTAACCACTCGTT 58.564 50.000 0.00 0.00 38.90 3.85
1266 1510 1.333619 GTTGTCTGCCGCAAGAAGAAA 59.666 47.619 0.00 0.00 43.02 2.52
1267 1511 0.944386 GTTGTCTGCCGCAAGAAGAA 59.056 50.000 0.00 0.00 43.02 2.52
1268 1512 1.221466 CGTTGTCTGCCGCAAGAAGA 61.221 55.000 0.00 0.00 43.02 2.87
1269 1513 1.205064 CGTTGTCTGCCGCAAGAAG 59.795 57.895 0.00 0.00 43.02 2.85
1370 1628 0.824109 TGATCTTCAGGCACGTAGGG 59.176 55.000 0.00 0.00 0.00 3.53
1378 1636 1.831580 AAAGCTGGTGATCTTCAGGC 58.168 50.000 14.54 8.89 0.00 4.85
1479 1744 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
1520 2252 3.369385 CATACACCGTCGTATCAACCTC 58.631 50.000 0.00 0.00 29.45 3.85
1521 2253 2.480759 GCATACACCGTCGTATCAACCT 60.481 50.000 0.00 0.00 29.45 3.50
1522 2254 1.856597 GCATACACCGTCGTATCAACC 59.143 52.381 0.00 0.00 29.45 3.77
1523 2255 2.532235 TGCATACACCGTCGTATCAAC 58.468 47.619 0.00 0.00 29.45 3.18
1524 2256 2.164827 ACTGCATACACCGTCGTATCAA 59.835 45.455 0.00 0.00 29.45 2.57
1525 2257 1.746787 ACTGCATACACCGTCGTATCA 59.253 47.619 0.00 0.00 29.45 2.15
1526 2258 2.117137 CACTGCATACACCGTCGTATC 58.883 52.381 0.00 0.00 29.45 2.24
1527 2259 1.475280 ACACTGCATACACCGTCGTAT 59.525 47.619 0.00 0.00 32.17 3.06
1528 2260 0.883153 ACACTGCATACACCGTCGTA 59.117 50.000 0.00 0.00 0.00 3.43
1531 2286 1.336887 ACTGACACTGCATACACCGTC 60.337 52.381 0.00 0.00 0.00 4.79
1542 2297 4.273235 TGCTGATGTAACAAACTGACACTG 59.727 41.667 0.00 0.00 0.00 3.66
1580 2339 0.951558 AACTGGCCAACTAGCAAACG 59.048 50.000 7.01 0.00 0.00 3.60
1582 2341 1.616159 GGAACTGGCCAACTAGCAAA 58.384 50.000 7.01 0.00 0.00 3.68
1584 2343 1.003839 CGGAACTGGCCAACTAGCA 60.004 57.895 7.01 0.00 0.00 3.49
1585 2344 1.003718 ACGGAACTGGCCAACTAGC 60.004 57.895 7.01 0.00 0.00 3.42
1617 2380 7.038048 ACCTACTAACGTCAATTAGTTAAGCC 58.962 38.462 3.15 0.00 41.62 4.35
1624 2387 9.793252 TTTTAGCTACCTACTAACGTCAATTAG 57.207 33.333 0.00 0.00 38.03 1.73
1630 2393 9.871299 GTATACTTTTAGCTACCTACTAACGTC 57.129 37.037 0.00 0.00 29.52 4.34
1649 2444 6.839454 TCCACTCTCCGATTCTAGTATACTT 58.161 40.000 11.40 0.00 0.00 2.24
1650 2445 6.043474 ACTCCACTCTCCGATTCTAGTATACT 59.957 42.308 10.87 10.87 0.00 2.12
1651 2446 6.148150 CACTCCACTCTCCGATTCTAGTATAC 59.852 46.154 0.00 0.00 0.00 1.47
1654 2449 4.452825 CACTCCACTCTCCGATTCTAGTA 58.547 47.826 0.00 0.00 0.00 1.82
1656 2451 2.034053 GCACTCCACTCTCCGATTCTAG 59.966 54.545 0.00 0.00 0.00 2.43
1668 2463 1.679944 CCATCCGAAATGCACTCCACT 60.680 52.381 0.00 0.00 0.00 4.00
1669 2464 0.734889 CCATCCGAAATGCACTCCAC 59.265 55.000 0.00 0.00 0.00 4.02
1674 2469 3.848272 TCTTTTCCATCCGAAATGCAC 57.152 42.857 0.00 0.00 40.18 4.57
1701 2499 1.004628 ACCATGCATGCACTAGTTGGA 59.995 47.619 33.43 7.58 0.00 3.53
1702 2500 1.466856 ACCATGCATGCACTAGTTGG 58.533 50.000 27.84 27.84 0.00 3.77
1704 2502 3.634397 AGTACCATGCATGCACTAGTT 57.366 42.857 25.37 3.10 0.00 2.24
1737 2536 5.540400 ATCACATTCCATTTTAGCATGGG 57.460 39.130 0.00 0.00 43.74 4.00
1915 2753 4.415596 AGGATCAGTTGCACCCAAAAATA 58.584 39.130 0.00 0.00 31.68 1.40
1985 2825 8.475639 AGTCTTTGTTTTCTCAGTGTACTCTTA 58.524 33.333 0.00 0.00 0.00 2.10
1986 2826 7.278868 CAGTCTTTGTTTTCTCAGTGTACTCTT 59.721 37.037 0.00 0.00 0.00 2.85
1987 2827 6.758886 CAGTCTTTGTTTTCTCAGTGTACTCT 59.241 38.462 0.00 0.00 0.00 3.24
1988 2828 6.757010 TCAGTCTTTGTTTTCTCAGTGTACTC 59.243 38.462 0.00 0.00 0.00 2.59
2030 2873 1.312815 AGTTGCTGAAAGTGGCACTC 58.687 50.000 22.31 10.39 38.23 3.51
2060 2903 8.034215 CACCAATAACTAATGGATTCAGCAAAA 58.966 33.333 0.00 0.00 39.12 2.44
2143 2986 5.715279 ACTACAGTACTAGTTTCAGCCATGA 59.285 40.000 0.00 0.00 0.00 3.07
2239 3134 2.373169 TGGTCCCATCTGCTCCATATTC 59.627 50.000 0.00 0.00 0.00 1.75
2255 3150 0.323957 GTCTACTGGGTGGTTGGTCC 59.676 60.000 0.00 0.00 0.00 4.46
2259 3154 3.270877 GCTATTGTCTACTGGGTGGTTG 58.729 50.000 0.00 0.00 0.00 3.77
2380 3275 3.274288 GAAGACCCAGTCATGCTAAAGG 58.726 50.000 0.00 0.00 34.60 3.11
2468 3367 4.366586 AGACAGATGCATGATTCGTGTAG 58.633 43.478 2.46 0.00 0.00 2.74
2573 3472 2.617308 CTGCTATCATCCTTGCCAGTTG 59.383 50.000 0.00 0.00 0.00 3.16
2707 3610 2.022195 CAGGAATGGAGGATTGCACTG 58.978 52.381 0.00 0.00 34.88 3.66
2708 3611 1.637553 ACAGGAATGGAGGATTGCACT 59.362 47.619 0.00 0.00 34.88 4.40
2764 3671 3.379372 CCTGCTGACCAGACCAAATTATG 59.621 47.826 0.47 0.00 44.64 1.90
2765 3672 3.266772 TCCTGCTGACCAGACCAAATTAT 59.733 43.478 0.47 0.00 44.64 1.28
2767 3674 1.425066 TCCTGCTGACCAGACCAAATT 59.575 47.619 0.47 0.00 44.64 1.82
2998 3910 1.400846 ACTCGCTCACCTACATACACG 59.599 52.381 0.00 0.00 0.00 4.49
3328 4240 3.071206 TGGCGAGGAGACAGGAGC 61.071 66.667 0.00 0.00 31.44 4.70
3335 4247 1.984570 CTTCAGGGTGGCGAGGAGA 60.985 63.158 0.00 0.00 0.00 3.71
3482 4394 2.744760 CTCCTCCTGTCATCTTCCTGA 58.255 52.381 0.00 0.00 0.00 3.86
4092 5007 1.546029 GGCAGTCAGAAAAATGGGGAC 59.454 52.381 0.00 0.00 0.00 4.46
4093 5008 1.549950 GGGCAGTCAGAAAAATGGGGA 60.550 52.381 0.00 0.00 0.00 4.81
4094 5009 0.897621 GGGCAGTCAGAAAAATGGGG 59.102 55.000 0.00 0.00 0.00 4.96
4095 5010 1.631405 TGGGCAGTCAGAAAAATGGG 58.369 50.000 0.00 0.00 0.00 4.00
4096 5011 2.159338 CGATGGGCAGTCAGAAAAATGG 60.159 50.000 0.00 0.00 0.00 3.16
4097 5012 2.733227 GCGATGGGCAGTCAGAAAAATG 60.733 50.000 0.00 0.00 42.87 2.32
4098 5013 1.474077 GCGATGGGCAGTCAGAAAAAT 59.526 47.619 0.00 0.00 42.87 1.82
4099 5014 0.881118 GCGATGGGCAGTCAGAAAAA 59.119 50.000 0.00 0.00 42.87 1.94
4100 5015 2.555123 GCGATGGGCAGTCAGAAAA 58.445 52.632 0.00 0.00 42.87 2.29
4101 5016 4.301505 GCGATGGGCAGTCAGAAA 57.698 55.556 0.00 0.00 42.87 2.52
4182 5097 3.743521 TGTTCCTTGACATCACCAAGAG 58.256 45.455 0.00 0.00 42.57 2.85
4211 5126 4.348168 AGTTCCACCATGTTAGAACTCAGT 59.652 41.667 13.01 0.00 44.19 3.41
4232 5147 0.251341 ATTTCGCTTCCTTGCCCAGT 60.251 50.000 0.00 0.00 0.00 4.00
4305 5224 5.455872 AGGGAAATCGACAGGATCTTAGTA 58.544 41.667 0.00 0.00 33.02 1.82
4307 5226 4.946478 AGGGAAATCGACAGGATCTTAG 57.054 45.455 0.00 0.00 33.02 2.18
4336 5269 6.003950 CACAAAAGAGGAACAGAGGGAAATA 58.996 40.000 0.00 0.00 0.00 1.40
4358 5291 4.602340 TCACCTTTCCTCAGAAGTACAC 57.398 45.455 0.00 0.00 32.35 2.90
4400 5334 2.206815 TGTGTGTTTGATGCAGCAAC 57.793 45.000 18.52 13.00 0.00 4.17
4562 5911 5.410067 TGAGAAACAAAACAAGCAAAGGAG 58.590 37.500 0.00 0.00 0.00 3.69
4610 5959 4.094212 GCTTCTCTAGCTTTTCATTTGCG 58.906 43.478 0.00 0.00 46.77 4.85
4656 6005 7.150783 ACTGTTAGAATTTCTGAAGGCAATC 57.849 36.000 9.22 0.00 0.00 2.67
4658 6007 5.473504 GGACTGTTAGAATTTCTGAAGGCAA 59.526 40.000 9.22 0.00 0.00 4.52
4681 6030 3.012518 CAGTTTGCTTAGTCTGGGATGG 58.987 50.000 0.00 0.00 0.00 3.51
4726 6077 8.635765 TGGTTCAACTAATGCTAAATTCTCTT 57.364 30.769 0.00 0.00 0.00 2.85
4770 6123 5.769967 GCATATATATAGCTATGCACCGC 57.230 43.478 16.77 8.07 46.08 5.68
4775 6128 8.501580 CACCAATGTGCATATATATAGCTATGC 58.498 37.037 16.77 16.49 46.67 3.14
4776 6129 9.768662 TCACCAATGTGCATATATATAGCTATG 57.231 33.333 16.77 1.82 42.46 2.23
4801 6161 1.882623 ACTTGCAGCTAACAAAGGCTC 59.117 47.619 3.25 0.00 36.59 4.70
4832 6196 6.478344 GTGTCCTGTAATTCAAAAATGCAACA 59.522 34.615 0.00 0.00 0.00 3.33
4833 6197 6.073819 GGTGTCCTGTAATTCAAAAATGCAAC 60.074 38.462 0.00 0.00 0.00 4.17
4841 6206 5.244402 TCTCGTAGGTGTCCTGTAATTCAAA 59.756 40.000 0.00 0.00 34.61 2.69
4934 6302 7.448469 GGTGGTATGCAAATAGTAGGAATTCAT 59.552 37.037 7.93 2.14 0.00 2.57
4943 6311 5.196695 TGCAATGGTGGTATGCAAATAGTA 58.803 37.500 0.00 0.00 46.23 1.82
4975 6350 8.816894 CCTTCATGGCCTAGTTAGATAAATAGA 58.183 37.037 3.32 0.00 36.31 1.98
4976 6351 8.598041 ACCTTCATGGCCTAGTTAGATAAATAG 58.402 37.037 3.32 1.09 40.22 1.73
4977 6352 8.506196 ACCTTCATGGCCTAGTTAGATAAATA 57.494 34.615 3.32 0.00 40.22 1.40
4978 6353 7.394144 ACCTTCATGGCCTAGTTAGATAAAT 57.606 36.000 3.32 0.00 40.22 1.40
4979 6354 6.824958 ACCTTCATGGCCTAGTTAGATAAA 57.175 37.500 3.32 0.00 40.22 1.40
5020 6400 2.810274 GCAGAGAACATGCTGACTCAAA 59.190 45.455 2.61 0.00 40.59 2.69
5059 6440 5.955488 ACTAGTAGTGTCATTGTACTGCAG 58.045 41.667 13.48 13.48 32.81 4.41
5069 6450 7.012894 GCTCATCTCAGTTACTAGTAGTGTCAT 59.987 40.741 13.29 0.46 0.00 3.06
5071 6452 6.540914 AGCTCATCTCAGTTACTAGTAGTGTC 59.459 42.308 13.29 5.85 0.00 3.67
5072 6453 6.317642 CAGCTCATCTCAGTTACTAGTAGTGT 59.682 42.308 13.29 0.00 0.00 3.55
5073 6454 6.238621 CCAGCTCATCTCAGTTACTAGTAGTG 60.239 46.154 13.29 5.47 0.00 2.74
5076 6457 5.133941 CCCAGCTCATCTCAGTTACTAGTA 58.866 45.833 0.00 0.00 0.00 1.82
5244 6649 2.158986 CCAGGAACACAGAGATAGCCTG 60.159 54.545 0.00 0.00 40.74 4.85
5254 6659 5.006746 GCGATTTATTACTCCAGGAACACAG 59.993 44.000 0.00 0.00 0.00 3.66
5258 6663 5.116882 ACAGCGATTTATTACTCCAGGAAC 58.883 41.667 0.00 0.00 0.00 3.62
5259 6664 5.353394 ACAGCGATTTATTACTCCAGGAA 57.647 39.130 0.00 0.00 0.00 3.36
5276 6682 4.150451 GTGGAATCAAAATGGAAAACAGCG 59.850 41.667 0.00 0.00 0.00 5.18
5319 6725 4.009002 GCTTCAGCTTCTCTCCATTTTCT 58.991 43.478 0.00 0.00 38.21 2.52
5320 6726 3.181512 CGCTTCAGCTTCTCTCCATTTTC 60.182 47.826 0.00 0.00 39.32 2.29
5321 6727 2.746362 CGCTTCAGCTTCTCTCCATTTT 59.254 45.455 0.00 0.00 39.32 1.82
5322 6728 2.289945 ACGCTTCAGCTTCTCTCCATTT 60.290 45.455 0.00 0.00 39.32 2.32
5323 6729 1.277557 ACGCTTCAGCTTCTCTCCATT 59.722 47.619 0.00 0.00 39.32 3.16
5324 6730 0.901124 ACGCTTCAGCTTCTCTCCAT 59.099 50.000 0.00 0.00 39.32 3.41
5325 6731 1.545841 TACGCTTCAGCTTCTCTCCA 58.454 50.000 0.00 0.00 39.32 3.86
5326 6732 2.863137 CAATACGCTTCAGCTTCTCTCC 59.137 50.000 0.00 0.00 39.32 3.71
5327 6733 2.283884 GCAATACGCTTCAGCTTCTCTC 59.716 50.000 0.00 0.00 39.32 3.20
5341 6747 3.393800 CCACCTCCTCTATTGCAATACG 58.606 50.000 15.21 11.35 0.00 3.06
5348 6754 1.210478 CCACACCCACCTCCTCTATTG 59.790 57.143 0.00 0.00 0.00 1.90
5412 6824 2.901813 CTCTGGCTCTGGCTCTGG 59.098 66.667 0.00 0.00 38.73 3.86
5413 6825 2.187424 GCTCTGGCTCTGGCTCTG 59.813 66.667 0.00 0.00 38.73 3.35
5414 6826 3.082701 GGCTCTGGCTCTGGCTCT 61.083 66.667 0.00 0.00 38.73 4.09
5415 6827 3.388703 CTGGCTCTGGCTCTGGCTC 62.389 68.421 0.00 0.00 38.73 4.70
5416 6828 3.400928 CTGGCTCTGGCTCTGGCT 61.401 66.667 0.00 0.00 38.73 4.75
5417 6829 3.388703 CTCTGGCTCTGGCTCTGGC 62.389 68.421 0.00 0.00 38.73 4.85
5418 6830 2.901813 CTCTGGCTCTGGCTCTGG 59.098 66.667 0.00 0.00 38.73 3.86
5419 6831 2.187424 GCTCTGGCTCTGGCTCTG 59.813 66.667 0.00 0.00 38.73 3.35
5420 6832 3.082701 GGCTCTGGCTCTGGCTCT 61.083 66.667 0.00 0.00 38.73 4.09
5421 6833 3.388703 CTGGCTCTGGCTCTGGCTC 62.389 68.421 0.00 0.00 38.73 4.70
5422 6834 3.400928 CTGGCTCTGGCTCTGGCT 61.401 66.667 0.00 0.00 38.73 4.75
5423 6835 3.388703 CTCTGGCTCTGGCTCTGGC 62.389 68.421 0.00 0.00 38.73 4.85
5424 6836 2.901813 CTCTGGCTCTGGCTCTGG 59.098 66.667 0.00 0.00 38.73 3.86
5474 6898 3.708220 CTGGCCGTCCTCTTCTCGC 62.708 68.421 0.00 0.00 0.00 5.03
5634 7079 0.037303 CCATCACCACCTCAACTGCT 59.963 55.000 0.00 0.00 0.00 4.24
5778 7223 1.376037 GAACCCTGCGGTGAAGAGG 60.376 63.158 0.00 0.00 43.71 3.69
5883 7346 2.287788 CGTCAGTTTGCTGCCTTGATTT 60.288 45.455 0.00 0.00 42.29 2.17
5884 7347 1.267806 CGTCAGTTTGCTGCCTTGATT 59.732 47.619 0.00 0.00 42.29 2.57
5885 7348 0.877071 CGTCAGTTTGCTGCCTTGAT 59.123 50.000 0.00 0.00 42.29 2.57
5886 7349 1.785041 GCGTCAGTTTGCTGCCTTGA 61.785 55.000 0.00 0.00 42.29 3.02
5898 7366 2.467838 CATTGATCGATCAGCGTCAGT 58.532 47.619 25.95 0.89 41.80 3.41
6027 7497 3.147595 CGGTGCTCATCCCTCCGA 61.148 66.667 0.00 0.00 43.22 4.55
6287 7782 2.357034 CCAAGGTGTGACCGACCG 60.357 66.667 0.00 0.00 44.90 4.79
6288 7783 0.393820 TAACCAAGGTGTGACCGACC 59.606 55.000 0.00 0.00 44.90 4.79
6289 7784 1.202557 TGTAACCAAGGTGTGACCGAC 60.203 52.381 0.00 0.00 44.90 4.79
6290 7785 1.069513 CTGTAACCAAGGTGTGACCGA 59.930 52.381 0.00 0.00 44.90 4.69
6291 7786 1.202604 ACTGTAACCAAGGTGTGACCG 60.203 52.381 0.00 0.00 44.90 4.79
6292 7787 2.490991 GACTGTAACCAAGGTGTGACC 58.509 52.381 0.00 0.00 38.99 4.02
6293 7788 2.490991 GGACTGTAACCAAGGTGTGAC 58.509 52.381 0.00 0.00 0.00 3.67
6294 7789 1.069513 CGGACTGTAACCAAGGTGTGA 59.930 52.381 0.00 0.00 0.00 3.58
6424 7940 4.400884 ACTGACAGACATAGTGGAGTCATC 59.599 45.833 10.08 0.00 37.23 2.92
6425 7941 4.348486 ACTGACAGACATAGTGGAGTCAT 58.652 43.478 10.08 0.00 37.23 3.06
6434 7950 4.199432 AGGAAGCAACTGACAGACATAG 57.801 45.455 10.08 0.00 0.00 2.23
6552 8074 4.339872 TGCACAGCAGGAAATGAAAAAT 57.660 36.364 0.00 0.00 33.32 1.82
6571 8093 3.004839 TCACCACTCGAGAATATAGCTGC 59.995 47.826 21.68 0.00 0.00 5.25
6590 8112 1.290203 CCATAGATGCACGGTGTCAC 58.710 55.000 10.24 0.00 0.00 3.67
6606 8128 3.002791 GTGTGAATGTGTGATCGACCAT 58.997 45.455 0.00 0.00 0.00 3.55
6635 8157 7.327975 TGAGGTGTACATAGAATTCAAACGAT 58.672 34.615 8.44 0.00 0.00 3.73
6690 8216 8.317679 GCCATTTGGAGTAAGATATAGTCAGAT 58.682 37.037 0.00 0.00 37.39 2.90
6695 8221 9.726438 GTAATGCCATTTGGAGTAAGATATAGT 57.274 33.333 0.00 0.00 37.39 2.12
6714 8255 1.301795 GAGGGCTAGCGGTAATGCC 60.302 63.158 14.69 14.69 44.22 4.40
6715 8256 1.301795 GGAGGGCTAGCGGTAATGC 60.302 63.158 9.00 0.00 0.00 3.56
6730 8271 6.985645 CACTCCTCTCTAATTTTCAGATGGAG 59.014 42.308 16.44 16.44 42.39 3.86
6731 8272 6.631314 GCACTCCTCTCTAATTTTCAGATGGA 60.631 42.308 0.00 0.00 0.00 3.41
6733 8274 6.111382 TGCACTCCTCTCTAATTTTCAGATG 58.889 40.000 0.00 0.00 0.00 2.90
6734 8275 6.305272 TGCACTCCTCTCTAATTTTCAGAT 57.695 37.500 0.00 0.00 0.00 2.90
6735 8276 5.745312 TGCACTCCTCTCTAATTTTCAGA 57.255 39.130 0.00 0.00 0.00 3.27
6738 8279 6.749923 ACATTGCACTCCTCTCTAATTTTC 57.250 37.500 0.00 0.00 0.00 2.29
6741 8282 6.798427 TCTACATTGCACTCCTCTCTAATT 57.202 37.500 0.00 0.00 0.00 1.40
6744 8285 4.830046 GGATCTACATTGCACTCCTCTCTA 59.170 45.833 0.00 0.00 0.00 2.43
6746 8287 3.640967 AGGATCTACATTGCACTCCTCTC 59.359 47.826 0.00 0.00 0.00 3.20
6749 8290 3.776969 TCAAGGATCTACATTGCACTCCT 59.223 43.478 0.00 0.00 39.68 3.69
6762 8303 9.118300 GACATCACTGAAATATTTCAAGGATCT 57.882 33.333 26.57 19.53 45.61 2.75
6769 8310 8.541133 TTACGTGACATCACTGAAATATTTCA 57.459 30.769 25.44 25.44 44.34 2.69
6772 8313 7.413000 GCACTTACGTGACATCACTGAAATATT 60.413 37.037 10.18 0.00 43.97 1.28
6774 8315 5.347635 GCACTTACGTGACATCACTGAAATA 59.652 40.000 10.18 0.00 43.97 1.40
6782 8323 3.378911 TTGAGCACTTACGTGACATCA 57.621 42.857 3.09 1.39 43.97 3.07
6784 8325 6.985188 ATAATTTGAGCACTTACGTGACAT 57.015 33.333 3.09 0.00 43.97 3.06
6785 8326 7.892778 TTATAATTTGAGCACTTACGTGACA 57.107 32.000 3.09 0.00 43.97 3.58
6786 8327 9.601971 TTTTTATAATTTGAGCACTTACGTGAC 57.398 29.630 3.09 0.00 43.97 3.67
6828 8370 4.395231 GGGGTGAGTCTTATTGCACTTTAC 59.605 45.833 0.00 0.00 0.00 2.01
6829 8371 4.585879 GGGGTGAGTCTTATTGCACTTTA 58.414 43.478 0.00 0.00 0.00 1.85
6857 8403 1.029947 AATCCCAAAGCGGTAAGGCG 61.030 55.000 0.00 0.00 38.18 5.52
6873 8419 5.077134 AGAAGGTGCCAAATGCTAAAATC 57.923 39.130 0.00 0.00 42.00 2.17
6874 8420 4.527816 TGAGAAGGTGCCAAATGCTAAAAT 59.472 37.500 0.00 0.00 42.00 1.82
6876 8422 3.255642 GTGAGAAGGTGCCAAATGCTAAA 59.744 43.478 0.00 0.00 42.00 1.85
6877 8423 2.819608 GTGAGAAGGTGCCAAATGCTAA 59.180 45.455 0.00 0.00 42.00 3.09
6886 8432 1.740025 GTTATGCAGTGAGAAGGTGCC 59.260 52.381 0.00 0.00 36.31 5.01
6888 8434 5.413833 AGATTTGTTATGCAGTGAGAAGGTG 59.586 40.000 0.00 0.00 0.00 4.00
6976 8522 0.656785 GCGTCGGTGTTAACAACCAA 59.343 50.000 17.85 3.70 0.00 3.67
7024 8570 0.680921 ATGTCAAAGATGCGGTGGGG 60.681 55.000 0.00 0.00 0.00 4.96
7027 8573 2.079158 AGACATGTCAAAGATGCGGTG 58.921 47.619 27.02 0.00 0.00 4.94
7028 8574 2.079158 CAGACATGTCAAAGATGCGGT 58.921 47.619 27.02 0.00 0.00 5.68
7029 8575 2.079158 ACAGACATGTCAAAGATGCGG 58.921 47.619 27.02 2.22 32.99 5.69
7030 8576 2.726989 GCACAGACATGTCAAAGATGCG 60.727 50.000 27.02 11.45 37.65 4.73
7031 8577 2.415090 GGCACAGACATGTCAAAGATGC 60.415 50.000 27.02 23.80 37.65 3.91
7038 8584 2.497138 CTTTCAGGCACAGACATGTCA 58.503 47.619 27.02 1.19 37.65 3.58
7042 8588 2.679059 CGATCCTTTCAGGCACAGACAT 60.679 50.000 0.00 0.00 34.61 3.06
7051 8597 1.542108 GGCCATCTCGATCCTTTCAGG 60.542 57.143 0.00 0.00 36.46 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.