Multiple sequence alignment - TraesCS5D01G380500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G380500 chr5D 100.000 5138 0 0 1 5138 450863958 450858821 0.000000e+00 9489.0
1 TraesCS5D01G380500 chr5D 77.381 336 47 16 4751 5062 460752538 460752208 6.840000e-39 172.0
2 TraesCS5D01G380500 chr5B 96.376 4388 105 28 396 4750 550931089 550926723 0.000000e+00 7173.0
3 TraesCS5D01G380500 chr5B 93.277 238 13 1 4901 5138 550926352 550926118 1.060000e-91 348.0
4 TraesCS5D01G380500 chr5B 86.857 175 11 2 4750 4912 550926693 550926519 8.790000e-43 185.0
5 TraesCS5D01G380500 chr5B 87.500 128 14 2 247 372 550933984 550933857 4.150000e-31 147.0
6 TraesCS5D01G380500 chr5A 97.709 3710 72 6 650 4350 570010450 570006745 0.000000e+00 6368.0
7 TraesCS5D01G380500 chr5A 77.679 336 46 14 4751 5062 580941131 580940801 1.470000e-40 178.0
8 TraesCS5D01G380500 chr5A 86.726 113 12 1 4921 5030 570006710 570006598 6.990000e-24 122.0
9 TraesCS5D01G380500 chr2D 95.417 1091 33 11 3302 4387 159702363 159701285 0.000000e+00 1722.0
10 TraesCS5D01G380500 chr2D 96.296 513 19 0 1270 1782 159702869 159702357 0.000000e+00 843.0
11 TraesCS5D01G380500 chr2D 90.698 215 16 4 4385 4597 159699597 159699385 3.030000e-72 283.0
12 TraesCS5D01G380500 chr1A 83.119 545 79 8 1021 1563 30117853 30118386 7.730000e-133 484.0
13 TraesCS5D01G380500 chr1A 89.394 66 5 1 1329 1394 38874748 38874685 1.190000e-11 82.4
14 TraesCS5D01G380500 chr1D 82.482 548 81 10 1021 1565 29840532 29839997 2.800000e-127 466.0
15 TraesCS5D01G380500 chr1B 82.117 548 83 10 1021 1565 47605014 47605549 6.060000e-124 455.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G380500 chr5D 450858821 450863958 5137 True 9489.000000 9489 100.0000 1 5138 1 chr5D.!!$R1 5137
1 TraesCS5D01G380500 chr5B 550926118 550933984 7866 True 1963.250000 7173 91.0025 247 5138 4 chr5B.!!$R1 4891
2 TraesCS5D01G380500 chr5A 570006598 570010450 3852 True 3245.000000 6368 92.2175 650 5030 2 chr5A.!!$R2 4380
3 TraesCS5D01G380500 chr2D 159699385 159702869 3484 True 949.333333 1722 94.1370 1270 4597 3 chr2D.!!$R1 3327
4 TraesCS5D01G380500 chr1A 30117853 30118386 533 False 484.000000 484 83.1190 1021 1563 1 chr1A.!!$F1 542
5 TraesCS5D01G380500 chr1D 29839997 29840532 535 True 466.000000 466 82.4820 1021 1565 1 chr1D.!!$R1 544
6 TraesCS5D01G380500 chr1B 47605014 47605549 535 False 455.000000 455 82.1170 1021 1565 1 chr1B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.025001 CACATTTTCTACGCGGCTCG 59.975 55.000 12.47 0.00 45.38 5.03 F
83 84 0.037160 GCTGGAAGTTCCGGGGTTTA 59.963 55.000 28.34 4.41 43.24 2.01 F
256 257 0.104487 TCGGAACAGGTGCGTTAACA 59.896 50.000 6.39 0.00 42.55 2.41 F
390 391 0.179001 AGTGTGGTTGCCTTACACCC 60.179 55.000 0.00 0.00 44.27 4.61 F
392 393 0.259065 TGTGGTTGCCTTACACCCAA 59.741 50.000 0.00 0.00 43.38 4.12 F
2158 4917 1.181098 GCCAAAGAGGGAGCTTGCAA 61.181 55.000 0.00 0.00 38.09 4.08 F
2917 5676 0.615850 AGGAGAAGGTGCTGGCTTAC 59.384 55.000 0.00 0.00 0.00 2.34 F
2946 5705 1.358046 GAAGGCTCCGCATGCATTC 59.642 57.895 19.57 7.62 42.43 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 4421 0.721718 CGAAGACGACATTGCCCTTC 59.278 55.000 0.0 0.0 42.66 3.46 R
1725 4484 0.882927 GCTTGGTGGCGTACAACTCA 60.883 55.000 0.0 0.0 37.78 3.41 R
2158 4917 0.322277 CAACCAGCAGCATCCTCTGT 60.322 55.000 0.0 0.0 36.49 3.41 R
2316 5075 1.433053 CGTGGTTCAACAACTCGCCA 61.433 55.000 0.0 0.0 32.50 5.69 R
2385 5144 2.263540 GCACGAAGAACCCCGCTA 59.736 61.111 0.0 0.0 0.00 4.26 R
3177 5936 0.529378 CCACTTGCTCAGAAATGGCC 59.471 55.000 0.0 0.0 0.00 5.36 R
3999 6760 0.899717 TGCTTGCCCCATCTCCAAAC 60.900 55.000 0.0 0.0 0.00 2.93 R
4926 9620 0.318955 AACGCTGCCAAAGACAATGC 60.319 50.000 0.0 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.542969 AGCTAACCCCCAAATCAAACT 57.457 42.857 0.00 0.00 0.00 2.66
22 23 3.165071 AGCTAACCCCCAAATCAAACTG 58.835 45.455 0.00 0.00 0.00 3.16
23 24 2.897326 GCTAACCCCCAAATCAAACTGT 59.103 45.455 0.00 0.00 0.00 3.55
24 25 3.323691 GCTAACCCCCAAATCAAACTGTT 59.676 43.478 0.00 0.00 0.00 3.16
25 26 4.525100 GCTAACCCCCAAATCAAACTGTTA 59.475 41.667 0.00 0.00 0.00 2.41
26 27 4.948341 AACCCCCAAATCAAACTGTTAC 57.052 40.909 0.00 0.00 0.00 2.50
27 28 2.888414 ACCCCCAAATCAAACTGTTACG 59.112 45.455 0.00 0.00 0.00 3.18
28 29 2.230266 CCCCCAAATCAAACTGTTACGG 59.770 50.000 0.00 0.00 0.00 4.02
29 30 2.352323 CCCCAAATCAAACTGTTACGGC 60.352 50.000 0.00 0.00 0.00 5.68
30 31 2.294791 CCCAAATCAAACTGTTACGGCA 59.705 45.455 0.00 0.00 0.00 5.69
31 32 3.305110 CCAAATCAAACTGTTACGGCAC 58.695 45.455 0.00 0.00 0.00 5.01
32 33 3.243234 CCAAATCAAACTGTTACGGCACA 60.243 43.478 0.00 0.00 0.00 4.57
33 34 4.545610 CAAATCAAACTGTTACGGCACAT 58.454 39.130 0.00 0.00 0.00 3.21
34 35 4.846779 AATCAAACTGTTACGGCACATT 57.153 36.364 0.00 0.00 0.00 2.71
35 36 4.846779 ATCAAACTGTTACGGCACATTT 57.153 36.364 0.00 0.00 0.00 2.32
36 37 4.640789 TCAAACTGTTACGGCACATTTT 57.359 36.364 0.00 0.00 0.00 1.82
37 38 4.602995 TCAAACTGTTACGGCACATTTTC 58.397 39.130 0.00 0.00 0.00 2.29
38 39 4.336993 TCAAACTGTTACGGCACATTTTCT 59.663 37.500 0.00 0.00 0.00 2.52
39 40 5.527951 TCAAACTGTTACGGCACATTTTCTA 59.472 36.000 0.00 0.00 0.00 2.10
40 41 5.352643 AACTGTTACGGCACATTTTCTAC 57.647 39.130 0.00 0.00 0.00 2.59
41 42 3.430895 ACTGTTACGGCACATTTTCTACG 59.569 43.478 0.00 0.00 0.00 3.51
42 43 2.158058 TGTTACGGCACATTTTCTACGC 59.842 45.455 0.00 0.00 0.00 4.42
43 44 0.993532 TACGGCACATTTTCTACGCG 59.006 50.000 3.53 3.53 0.00 6.01
44 45 1.060308 CGGCACATTTTCTACGCGG 59.940 57.895 12.47 0.00 0.00 6.46
45 46 1.226295 GGCACATTTTCTACGCGGC 60.226 57.895 12.47 0.00 0.00 6.53
46 47 1.644786 GGCACATTTTCTACGCGGCT 61.645 55.000 12.47 0.00 0.00 5.52
47 48 0.247695 GCACATTTTCTACGCGGCTC 60.248 55.000 12.47 0.00 0.00 4.70
48 49 0.025001 CACATTTTCTACGCGGCTCG 59.975 55.000 12.47 0.00 45.38 5.03
49 50 1.082117 ACATTTTCTACGCGGCTCGG 61.082 55.000 12.47 0.00 43.86 4.63
50 51 0.804544 CATTTTCTACGCGGCTCGGA 60.805 55.000 12.47 0.00 43.86 4.55
51 52 0.108520 ATTTTCTACGCGGCTCGGAA 60.109 50.000 12.47 4.25 43.86 4.30
52 53 0.734942 TTTTCTACGCGGCTCGGAAG 60.735 55.000 12.47 0.00 43.86 3.46
53 54 1.870055 TTTCTACGCGGCTCGGAAGT 61.870 55.000 12.47 0.00 43.86 3.01
54 55 1.870055 TTCTACGCGGCTCGGAAGTT 61.870 55.000 12.47 0.00 43.86 2.66
55 56 1.872679 CTACGCGGCTCGGAAGTTC 60.873 63.158 12.47 0.00 43.86 3.01
56 57 2.267681 CTACGCGGCTCGGAAGTTCT 62.268 60.000 12.47 0.00 43.86 3.01
57 58 1.026182 TACGCGGCTCGGAAGTTCTA 61.026 55.000 12.47 0.00 43.86 2.10
58 59 1.586564 CGCGGCTCGGAAGTTCTAG 60.587 63.158 0.00 2.40 33.78 2.43
59 60 1.227002 GCGGCTCGGAAGTTCTAGG 60.227 63.158 2.25 0.00 0.00 3.02
60 61 1.227002 CGGCTCGGAAGTTCTAGGC 60.227 63.158 16.92 16.92 0.00 3.93
61 62 1.898154 GGCTCGGAAGTTCTAGGCA 59.102 57.895 19.99 0.00 34.84 4.75
62 63 0.179097 GGCTCGGAAGTTCTAGGCAG 60.179 60.000 19.99 5.53 34.84 4.85
63 64 0.179097 GCTCGGAAGTTCTAGGCAGG 60.179 60.000 2.25 0.00 0.00 4.85
64 65 0.461961 CTCGGAAGTTCTAGGCAGGG 59.538 60.000 2.25 0.00 0.00 4.45
65 66 1.153349 CGGAAGTTCTAGGCAGGGC 60.153 63.158 2.25 0.00 0.00 5.19
66 67 1.617947 CGGAAGTTCTAGGCAGGGCT 61.618 60.000 2.25 0.00 0.00 5.19
67 68 0.107459 GGAAGTTCTAGGCAGGGCTG 60.107 60.000 5.52 0.00 0.00 4.85
68 69 0.107459 GAAGTTCTAGGCAGGGCTGG 60.107 60.000 5.52 2.45 0.00 4.85
69 70 0.547712 AAGTTCTAGGCAGGGCTGGA 60.548 55.000 4.80 4.80 0.00 3.86
70 71 0.547712 AGTTCTAGGCAGGGCTGGAA 60.548 55.000 15.85 15.85 0.00 3.53
71 72 0.107459 GTTCTAGGCAGGGCTGGAAG 60.107 60.000 19.33 3.66 0.00 3.46
72 73 0.547712 TTCTAGGCAGGGCTGGAAGT 60.548 55.000 15.85 0.00 35.30 3.01
73 74 0.547712 TCTAGGCAGGGCTGGAAGTT 60.548 55.000 6.45 0.00 35.30 2.66
74 75 0.107459 CTAGGCAGGGCTGGAAGTTC 60.107 60.000 5.52 0.00 35.30 3.01
75 76 1.562672 TAGGCAGGGCTGGAAGTTCC 61.563 60.000 15.50 15.50 36.96 3.62
76 77 2.747855 GCAGGGCTGGAAGTTCCG 60.748 66.667 17.13 12.48 40.17 4.30
77 78 2.045926 CAGGGCTGGAAGTTCCGG 60.046 66.667 24.35 24.35 45.82 5.14
78 79 3.330720 AGGGCTGGAAGTTCCGGG 61.331 66.667 28.34 18.67 43.24 5.73
79 80 4.426313 GGGCTGGAAGTTCCGGGG 62.426 72.222 28.34 16.44 43.24 5.73
80 81 3.647771 GGCTGGAAGTTCCGGGGT 61.648 66.667 28.34 0.00 43.24 4.95
81 82 2.434774 GCTGGAAGTTCCGGGGTT 59.565 61.111 28.34 0.00 43.24 4.11
82 83 1.228459 GCTGGAAGTTCCGGGGTTT 60.228 57.895 28.34 0.00 43.24 3.27
83 84 0.037160 GCTGGAAGTTCCGGGGTTTA 59.963 55.000 28.34 4.41 43.24 2.01
84 85 1.817357 CTGGAAGTTCCGGGGTTTAC 58.183 55.000 21.50 0.00 40.17 2.01
85 86 1.072648 CTGGAAGTTCCGGGGTTTACA 59.927 52.381 21.50 0.00 40.17 2.41
86 87 1.493871 TGGAAGTTCCGGGGTTTACAA 59.506 47.619 17.13 0.00 40.17 2.41
87 88 2.091994 TGGAAGTTCCGGGGTTTACAAA 60.092 45.455 17.13 0.00 40.17 2.83
88 89 2.555325 GGAAGTTCCGGGGTTTACAAAG 59.445 50.000 6.06 0.00 0.00 2.77
89 90 3.479489 GAAGTTCCGGGGTTTACAAAGA 58.521 45.455 0.00 0.00 0.00 2.52
90 91 3.136009 AGTTCCGGGGTTTACAAAGAG 57.864 47.619 0.00 0.00 0.00 2.85
91 92 2.440627 AGTTCCGGGGTTTACAAAGAGT 59.559 45.455 0.00 0.00 0.00 3.24
92 93 3.117776 AGTTCCGGGGTTTACAAAGAGTT 60.118 43.478 0.00 0.00 0.00 3.01
93 94 3.581265 TCCGGGGTTTACAAAGAGTTT 57.419 42.857 0.00 0.00 0.00 2.66
94 95 3.215975 TCCGGGGTTTACAAAGAGTTTG 58.784 45.455 0.00 0.00 45.95 2.93
95 96 2.295070 CCGGGGTTTACAAAGAGTTTGG 59.705 50.000 0.00 0.00 44.81 3.28
96 97 3.215975 CGGGGTTTACAAAGAGTTTGGA 58.784 45.455 4.52 0.00 44.81 3.53
97 98 3.004002 CGGGGTTTACAAAGAGTTTGGAC 59.996 47.826 4.52 0.80 44.81 4.02
98 99 3.319972 GGGGTTTACAAAGAGTTTGGACC 59.680 47.826 4.52 8.26 44.81 4.46
99 100 3.955551 GGGTTTACAAAGAGTTTGGACCA 59.044 43.478 16.68 0.00 44.81 4.02
100 101 4.403113 GGGTTTACAAAGAGTTTGGACCAA 59.597 41.667 1.69 1.69 44.81 3.67
101 102 5.105269 GGGTTTACAAAGAGTTTGGACCAAA 60.105 40.000 15.89 15.89 44.81 3.28
102 103 6.399743 GGTTTACAAAGAGTTTGGACCAAAA 58.600 36.000 21.20 3.24 44.81 2.44
103 104 7.045416 GGTTTACAAAGAGTTTGGACCAAAAT 58.955 34.615 21.20 20.26 44.81 1.82
104 105 7.551262 GGTTTACAAAGAGTTTGGACCAAAATT 59.449 33.333 21.20 12.51 44.81 1.82
105 106 9.589111 GTTTACAAAGAGTTTGGACCAAAATTA 57.411 29.630 21.20 6.46 44.81 1.40
109 110 9.758651 ACAAAGAGTTTGGACCAAAATTATAAC 57.241 29.630 21.20 7.97 44.81 1.89
110 111 9.203421 CAAAGAGTTTGGACCAAAATTATAACC 57.797 33.333 21.20 7.26 35.03 2.85
111 112 8.721133 AAGAGTTTGGACCAAAATTATAACCT 57.279 30.769 21.20 11.19 35.03 3.50
112 113 8.349568 AGAGTTTGGACCAAAATTATAACCTC 57.650 34.615 21.20 18.36 35.03 3.85
113 114 8.170730 AGAGTTTGGACCAAAATTATAACCTCT 58.829 33.333 21.20 20.04 35.03 3.69
114 115 8.349568 AGTTTGGACCAAAATTATAACCTCTC 57.650 34.615 21.20 4.43 35.03 3.20
115 116 8.170730 AGTTTGGACCAAAATTATAACCTCTCT 58.829 33.333 21.20 6.64 35.03 3.10
116 117 8.803235 GTTTGGACCAAAATTATAACCTCTCTT 58.197 33.333 21.20 0.00 35.03 2.85
121 122 9.952188 GACCAAAATTATAACCTCTCTTAATGC 57.048 33.333 0.00 0.00 0.00 3.56
122 123 9.474313 ACCAAAATTATAACCTCTCTTAATGCA 57.526 29.630 0.00 0.00 0.00 3.96
123 124 9.736023 CCAAAATTATAACCTCTCTTAATGCAC 57.264 33.333 0.00 0.00 0.00 4.57
124 125 9.438291 CAAAATTATAACCTCTCTTAATGCACG 57.562 33.333 0.00 0.00 0.00 5.34
125 126 7.730364 AATTATAACCTCTCTTAATGCACGG 57.270 36.000 0.00 0.00 0.00 4.94
126 127 6.474140 TTATAACCTCTCTTAATGCACGGA 57.526 37.500 0.00 0.00 0.00 4.69
127 128 2.969628 ACCTCTCTTAATGCACGGAG 57.030 50.000 0.00 0.00 0.00 4.63
128 129 1.482593 ACCTCTCTTAATGCACGGAGG 59.517 52.381 13.30 13.30 43.99 4.30
129 130 1.482593 CCTCTCTTAATGCACGGAGGT 59.517 52.381 0.00 0.00 36.54 3.85
130 131 2.093447 CCTCTCTTAATGCACGGAGGTT 60.093 50.000 0.00 0.00 36.54 3.50
131 132 3.600388 CTCTCTTAATGCACGGAGGTTT 58.400 45.455 0.00 0.00 0.00 3.27
132 133 3.596214 TCTCTTAATGCACGGAGGTTTC 58.404 45.455 0.00 0.00 0.00 2.78
133 134 3.007506 TCTCTTAATGCACGGAGGTTTCA 59.992 43.478 0.00 0.00 0.00 2.69
134 135 3.745799 TCTTAATGCACGGAGGTTTCAA 58.254 40.909 0.00 0.00 0.00 2.69
135 136 3.500680 TCTTAATGCACGGAGGTTTCAAC 59.499 43.478 0.00 0.00 0.00 3.18
147 148 3.728076 GGTTTCAACCCTTGGAAGTTC 57.272 47.619 0.00 0.00 43.43 3.01
148 149 2.364324 GGTTTCAACCCTTGGAAGTTCC 59.636 50.000 15.50 15.50 43.43 3.62
149 150 2.364324 GTTTCAACCCTTGGAAGTTCCC 59.636 50.000 19.42 2.04 35.03 3.97
150 151 0.109723 TCAACCCTTGGAAGTTCCCG 59.890 55.000 19.42 10.06 35.03 5.14
151 152 0.893727 CAACCCTTGGAAGTTCCCGG 60.894 60.000 19.42 17.86 35.03 5.73
152 153 2.076597 AACCCTTGGAAGTTCCCGGG 62.077 60.000 30.88 30.88 46.16 5.73
153 154 2.535331 CCCTTGGAAGTTCCCGGGT 61.535 63.158 27.12 0.00 39.86 5.28
154 155 1.202769 CCCTTGGAAGTTCCCGGGTA 61.203 60.000 27.12 8.50 39.86 3.69
155 156 0.916809 CCTTGGAAGTTCCCGGGTAT 59.083 55.000 22.86 4.48 35.03 2.73
156 157 1.134189 CCTTGGAAGTTCCCGGGTATC 60.134 57.143 22.86 14.09 35.03 2.24
157 158 0.913924 TTGGAAGTTCCCGGGTATCC 59.086 55.000 22.86 22.19 35.03 2.59
158 159 0.252789 TGGAAGTTCCCGGGTATCCA 60.253 55.000 25.19 25.19 35.03 3.41
159 160 1.137697 GGAAGTTCCCGGGTATCCAT 58.862 55.000 22.86 2.89 0.00 3.41
160 161 1.202770 GGAAGTTCCCGGGTATCCATG 60.203 57.143 22.86 0.00 0.00 3.66
161 162 1.489230 GAAGTTCCCGGGTATCCATGT 59.511 52.381 22.86 0.00 0.00 3.21
162 163 2.482414 AGTTCCCGGGTATCCATGTA 57.518 50.000 22.86 0.00 0.00 2.29
163 164 2.326428 AGTTCCCGGGTATCCATGTAG 58.674 52.381 22.86 0.00 0.00 2.74
164 165 2.044758 GTTCCCGGGTATCCATGTAGT 58.955 52.381 22.86 0.00 0.00 2.73
165 166 2.436911 GTTCCCGGGTATCCATGTAGTT 59.563 50.000 22.86 0.00 0.00 2.24
166 167 2.766736 TCCCGGGTATCCATGTAGTTT 58.233 47.619 22.86 0.00 0.00 2.66
167 168 2.436542 TCCCGGGTATCCATGTAGTTTG 59.563 50.000 22.86 0.00 0.00 2.93
168 169 2.218603 CCGGGTATCCATGTAGTTTGC 58.781 52.381 0.00 0.00 0.00 3.68
169 170 2.420827 CCGGGTATCCATGTAGTTTGCA 60.421 50.000 0.00 0.00 0.00 4.08
170 171 3.275143 CGGGTATCCATGTAGTTTGCAA 58.725 45.455 0.00 0.00 0.00 4.08
171 172 3.064820 CGGGTATCCATGTAGTTTGCAAC 59.935 47.826 0.00 0.00 0.00 4.17
172 173 4.270008 GGGTATCCATGTAGTTTGCAACT 58.730 43.478 0.00 2.51 45.40 3.16
173 174 4.096382 GGGTATCCATGTAGTTTGCAACTG 59.904 45.833 0.00 0.00 42.84 3.16
174 175 3.855689 ATCCATGTAGTTTGCAACTGC 57.144 42.857 0.00 4.45 42.84 4.40
175 176 1.535028 TCCATGTAGTTTGCAACTGCG 59.465 47.619 0.00 0.00 45.64 5.18
176 177 1.535028 CCATGTAGTTTGCAACTGCGA 59.465 47.619 0.00 0.00 45.64 5.10
177 178 2.162208 CCATGTAGTTTGCAACTGCGAT 59.838 45.455 0.00 0.00 45.64 4.58
178 179 2.967459 TGTAGTTTGCAACTGCGATG 57.033 45.000 0.00 0.00 45.64 3.84
179 180 2.217750 TGTAGTTTGCAACTGCGATGT 58.782 42.857 0.00 0.00 45.64 3.06
180 181 3.394719 TGTAGTTTGCAACTGCGATGTA 58.605 40.909 0.00 0.00 45.64 2.29
181 182 3.810386 TGTAGTTTGCAACTGCGATGTAA 59.190 39.130 0.00 0.00 45.64 2.41
182 183 3.980646 AGTTTGCAACTGCGATGTAAA 57.019 38.095 0.00 0.00 45.83 2.01
183 184 3.628017 AGTTTGCAACTGCGATGTAAAC 58.372 40.909 16.47 16.47 46.84 2.01
184 185 3.628017 GTTTGCAACTGCGATGTAAACT 58.372 40.909 16.75 0.00 44.66 2.66
185 186 3.536158 TTGCAACTGCGATGTAAACTC 57.464 42.857 0.00 0.00 45.83 3.01
186 187 2.766313 TGCAACTGCGATGTAAACTCT 58.234 42.857 0.00 0.00 45.83 3.24
187 188 2.736721 TGCAACTGCGATGTAAACTCTC 59.263 45.455 0.00 0.00 45.83 3.20
188 189 2.996621 GCAACTGCGATGTAAACTCTCT 59.003 45.455 0.00 0.00 0.00 3.10
189 190 3.433615 GCAACTGCGATGTAAACTCTCTT 59.566 43.478 0.00 0.00 0.00 2.85
190 191 4.625742 GCAACTGCGATGTAAACTCTCTTA 59.374 41.667 0.00 0.00 0.00 2.10
191 192 5.220303 GCAACTGCGATGTAAACTCTCTTAG 60.220 44.000 0.00 0.00 0.00 2.18
192 193 5.646577 ACTGCGATGTAAACTCTCTTAGT 57.353 39.130 0.00 0.00 41.49 2.24
193 194 5.642686 ACTGCGATGTAAACTCTCTTAGTC 58.357 41.667 0.00 0.00 37.50 2.59
194 195 4.995124 TGCGATGTAAACTCTCTTAGTCC 58.005 43.478 0.00 0.00 37.50 3.85
195 196 4.036352 GCGATGTAAACTCTCTTAGTCCG 58.964 47.826 0.00 0.00 37.50 4.79
196 197 4.201891 GCGATGTAAACTCTCTTAGTCCGA 60.202 45.833 0.00 0.00 37.50 4.55
197 198 5.264712 CGATGTAAACTCTCTTAGTCCGAC 58.735 45.833 0.00 0.00 37.50 4.79
198 199 5.163784 CGATGTAAACTCTCTTAGTCCGACA 60.164 44.000 0.40 0.00 37.50 4.35
199 200 5.624344 TGTAAACTCTCTTAGTCCGACAG 57.376 43.478 0.40 0.00 37.50 3.51
200 201 5.311265 TGTAAACTCTCTTAGTCCGACAGA 58.689 41.667 0.40 0.00 37.50 3.41
201 202 5.766670 TGTAAACTCTCTTAGTCCGACAGAA 59.233 40.000 0.40 0.00 37.50 3.02
202 203 4.769859 AACTCTCTTAGTCCGACAGAAC 57.230 45.455 0.40 0.00 37.50 3.01
203 204 3.083293 ACTCTCTTAGTCCGACAGAACC 58.917 50.000 0.40 0.00 30.33 3.62
204 205 3.244981 ACTCTCTTAGTCCGACAGAACCT 60.245 47.826 0.40 0.00 30.33 3.50
205 206 3.082548 TCTCTTAGTCCGACAGAACCTG 58.917 50.000 0.40 0.00 37.52 4.00
206 207 1.544691 TCTTAGTCCGACAGAACCTGC 59.455 52.381 0.40 0.00 34.37 4.85
207 208 0.606604 TTAGTCCGACAGAACCTGCC 59.393 55.000 0.40 0.00 34.37 4.85
208 209 1.255667 TAGTCCGACAGAACCTGCCC 61.256 60.000 0.40 0.00 34.37 5.36
209 210 3.691342 TCCGACAGAACCTGCCCG 61.691 66.667 0.00 0.00 34.37 6.13
210 211 4.760047 CCGACAGAACCTGCCCGG 62.760 72.222 11.79 11.79 41.63 5.73
211 212 3.691342 CGACAGAACCTGCCCGGA 61.691 66.667 0.73 0.00 34.37 5.14
212 213 2.747686 GACAGAACCTGCCCGGAA 59.252 61.111 0.73 0.00 34.37 4.30
213 214 1.376037 GACAGAACCTGCCCGGAAG 60.376 63.158 0.73 0.00 34.37 3.46
214 215 2.747855 CAGAACCTGCCCGGAAGC 60.748 66.667 0.73 0.00 36.31 3.86
215 216 2.930562 AGAACCTGCCCGGAAGCT 60.931 61.111 0.73 0.00 36.31 3.74
216 217 2.747855 GAACCTGCCCGGAAGCTG 60.748 66.667 0.73 2.29 36.31 4.24
223 224 3.393970 CCCGGAAGCTGCCTCTGA 61.394 66.667 9.73 0.00 0.00 3.27
224 225 2.739996 CCCGGAAGCTGCCTCTGAT 61.740 63.158 9.73 0.00 0.00 2.90
225 226 1.523258 CCGGAAGCTGCCTCTGATG 60.523 63.158 9.73 0.00 0.00 3.07
226 227 1.220206 CGGAAGCTGCCTCTGATGT 59.780 57.895 9.73 0.00 0.00 3.06
227 228 0.392193 CGGAAGCTGCCTCTGATGTT 60.392 55.000 9.73 0.00 0.00 2.71
228 229 1.377536 GGAAGCTGCCTCTGATGTTC 58.622 55.000 2.27 0.00 0.00 3.18
229 230 1.377536 GAAGCTGCCTCTGATGTTCC 58.622 55.000 0.00 0.00 0.00 3.62
230 231 0.694771 AAGCTGCCTCTGATGTTCCA 59.305 50.000 0.00 0.00 0.00 3.53
231 232 0.252479 AGCTGCCTCTGATGTTCCAG 59.748 55.000 0.00 0.00 35.55 3.86
232 233 0.747283 GCTGCCTCTGATGTTCCAGG 60.747 60.000 0.00 0.00 34.99 4.45
233 234 4.232310 GCCTCTGATGTTCCAGGC 57.768 61.111 0.00 0.00 44.63 4.85
234 235 1.606531 GCCTCTGATGTTCCAGGCT 59.393 57.895 1.40 0.00 46.88 4.58
235 236 0.833287 GCCTCTGATGTTCCAGGCTA 59.167 55.000 1.40 0.00 46.88 3.93
236 237 1.419387 GCCTCTGATGTTCCAGGCTAT 59.581 52.381 1.40 0.00 46.88 2.97
237 238 2.158696 GCCTCTGATGTTCCAGGCTATT 60.159 50.000 1.40 0.00 46.88 1.73
238 239 3.737850 CCTCTGATGTTCCAGGCTATTC 58.262 50.000 0.00 0.00 34.99 1.75
239 240 3.388308 CTCTGATGTTCCAGGCTATTCG 58.612 50.000 0.00 0.00 34.99 3.34
240 241 2.103094 TCTGATGTTCCAGGCTATTCGG 59.897 50.000 0.00 0.00 34.99 4.30
241 242 2.103094 CTGATGTTCCAGGCTATTCGGA 59.897 50.000 0.00 0.00 0.00 4.55
242 243 2.503765 TGATGTTCCAGGCTATTCGGAA 59.496 45.455 0.17 0.17 36.46 4.30
245 246 2.691409 TTCCAGGCTATTCGGAACAG 57.309 50.000 0.17 0.00 33.88 3.16
246 247 0.830648 TCCAGGCTATTCGGAACAGG 59.169 55.000 0.00 0.00 0.00 4.00
247 248 0.541863 CCAGGCTATTCGGAACAGGT 59.458 55.000 0.00 0.00 0.00 4.00
248 249 1.656652 CAGGCTATTCGGAACAGGTG 58.343 55.000 0.00 0.00 0.00 4.00
249 250 0.107654 AGGCTATTCGGAACAGGTGC 60.108 55.000 0.00 0.00 0.00 5.01
250 251 1.429148 GGCTATTCGGAACAGGTGCG 61.429 60.000 0.00 0.00 43.49 5.34
251 252 0.739813 GCTATTCGGAACAGGTGCGT 60.740 55.000 0.00 0.00 42.55 5.24
252 253 1.722011 CTATTCGGAACAGGTGCGTT 58.278 50.000 0.00 0.00 42.55 4.84
253 254 2.883574 CTATTCGGAACAGGTGCGTTA 58.116 47.619 0.00 0.00 42.55 3.18
254 255 2.172851 ATTCGGAACAGGTGCGTTAA 57.827 45.000 0.00 0.00 42.55 2.01
255 256 1.219646 TTCGGAACAGGTGCGTTAAC 58.780 50.000 0.00 0.00 42.55 2.01
256 257 0.104487 TCGGAACAGGTGCGTTAACA 59.896 50.000 6.39 0.00 42.55 2.41
257 258 0.511221 CGGAACAGGTGCGTTAACAG 59.489 55.000 6.39 0.00 36.12 3.16
258 259 0.237498 GGAACAGGTGCGTTAACAGC 59.763 55.000 6.39 10.49 38.33 4.40
260 261 1.602377 GAACAGGTGCGTTAACAGCTT 59.398 47.619 18.50 8.12 45.77 3.74
274 275 3.274095 ACAGCTTATTCAAGGGCTCTC 57.726 47.619 0.00 0.00 32.30 3.20
280 281 5.426833 AGCTTATTCAAGGGCTCTCTCTTTA 59.573 40.000 0.00 0.00 31.96 1.85
282 283 7.291182 AGCTTATTCAAGGGCTCTCTCTTTATA 59.709 37.037 0.00 0.00 31.96 0.98
290 291 7.971368 AGGGCTCTCTCTTTATATTAGATCC 57.029 40.000 0.00 0.00 0.00 3.36
291 292 6.900743 AGGGCTCTCTCTTTATATTAGATCCC 59.099 42.308 0.00 0.00 41.12 3.85
343 344 2.406024 GTGCATGCAGTTGATTTTCACG 59.594 45.455 23.41 0.00 0.00 4.35
344 345 1.987770 GCATGCAGTTGATTTTCACGG 59.012 47.619 14.21 0.00 0.00 4.94
350 351 4.277174 TGCAGTTGATTTTCACGGTATGTT 59.723 37.500 0.00 0.00 0.00 2.71
364 365 2.357154 GGTATGTTCAAGATGCACCCCT 60.357 50.000 0.00 0.00 0.00 4.79
365 366 2.134789 ATGTTCAAGATGCACCCCTC 57.865 50.000 0.00 0.00 0.00 4.30
366 367 1.067295 TGTTCAAGATGCACCCCTCT 58.933 50.000 0.00 0.00 0.00 3.69
368 369 2.642311 TGTTCAAGATGCACCCCTCTTA 59.358 45.455 0.10 0.00 30.70 2.10
369 370 3.073798 TGTTCAAGATGCACCCCTCTTAA 59.926 43.478 0.10 0.00 30.70 1.85
370 371 4.263905 TGTTCAAGATGCACCCCTCTTAAT 60.264 41.667 0.10 0.00 30.70 1.40
371 372 5.045213 TGTTCAAGATGCACCCCTCTTAATA 60.045 40.000 0.10 0.00 30.70 0.98
372 373 5.296151 TCAAGATGCACCCCTCTTAATAG 57.704 43.478 0.10 0.00 30.70 1.73
373 374 4.721776 TCAAGATGCACCCCTCTTAATAGT 59.278 41.667 0.10 0.00 30.70 2.12
374 375 4.696479 AGATGCACCCCTCTTAATAGTG 57.304 45.455 0.00 0.00 0.00 2.74
375 376 4.040755 AGATGCACCCCTCTTAATAGTGT 58.959 43.478 0.00 0.00 0.00 3.55
376 377 3.627395 TGCACCCCTCTTAATAGTGTG 57.373 47.619 0.00 4.39 0.00 3.82
377 378 2.238646 TGCACCCCTCTTAATAGTGTGG 59.761 50.000 8.74 0.00 0.00 4.17
378 379 2.238898 GCACCCCTCTTAATAGTGTGGT 59.761 50.000 8.74 0.00 0.00 4.16
379 380 3.308188 GCACCCCTCTTAATAGTGTGGTT 60.308 47.826 8.74 0.00 0.00 3.67
382 383 3.279434 CCCTCTTAATAGTGTGGTTGCC 58.721 50.000 0.00 0.00 0.00 4.52
383 384 3.054361 CCCTCTTAATAGTGTGGTTGCCT 60.054 47.826 0.00 0.00 0.00 4.75
384 385 4.567747 CCCTCTTAATAGTGTGGTTGCCTT 60.568 45.833 0.00 0.00 0.00 4.35
385 386 5.338871 CCCTCTTAATAGTGTGGTTGCCTTA 60.339 44.000 0.00 0.00 0.00 2.69
386 387 5.585047 CCTCTTAATAGTGTGGTTGCCTTAC 59.415 44.000 0.00 0.00 0.00 2.34
387 388 6.116711 TCTTAATAGTGTGGTTGCCTTACA 57.883 37.500 0.00 0.00 0.00 2.41
388 389 5.935789 TCTTAATAGTGTGGTTGCCTTACAC 59.064 40.000 0.00 0.00 43.71 2.90
389 390 2.554370 TAGTGTGGTTGCCTTACACC 57.446 50.000 0.00 0.00 44.27 4.16
390 391 0.179001 AGTGTGGTTGCCTTACACCC 60.179 55.000 0.00 0.00 44.27 4.61
391 392 0.466555 GTGTGGTTGCCTTACACCCA 60.467 55.000 0.00 0.00 38.78 4.51
392 393 0.259065 TGTGGTTGCCTTACACCCAA 59.741 50.000 0.00 0.00 43.38 4.12
400 3146 6.670027 TGGTTGCCTTACACCCAATATAAAAT 59.330 34.615 0.00 0.00 38.02 1.82
448 3194 6.036577 TGAATTTTTCCATTGAACCTAGGC 57.963 37.500 9.30 0.00 0.00 3.93
449 3195 5.779771 TGAATTTTTCCATTGAACCTAGGCT 59.220 36.000 9.30 0.00 0.00 4.58
480 3228 9.447157 TTTCTTTGAATTGTGAAAGATTGGTTT 57.553 25.926 0.00 0.00 37.87 3.27
489 3237 5.415701 TGTGAAAGATTGGTTTCTATCCTGC 59.584 40.000 0.00 0.00 37.34 4.85
493 3241 7.500227 TGAAAGATTGGTTTCTATCCTGCATAG 59.500 37.037 0.00 0.00 37.34 2.23
528 3276 2.675658 TTCCTGCAAACTAAAGGGCT 57.324 45.000 0.00 0.00 0.00 5.19
537 3285 7.003402 TGCAAACTAAAGGGCTTCAAATATT 57.997 32.000 0.00 0.00 0.00 1.28
538 3286 8.128322 TGCAAACTAAAGGGCTTCAAATATTA 57.872 30.769 0.00 0.00 0.00 0.98
602 3354 9.535878 CTGTAAACAGGCTTTGGTTTTTATTTA 57.464 29.630 6.74 0.00 37.93 1.40
605 3357 8.972458 AAACAGGCTTTGGTTTTTATTTATGT 57.028 26.923 0.00 0.00 30.78 2.29
606 3358 8.972458 AACAGGCTTTGGTTTTTATTTATGTT 57.028 26.923 0.00 0.00 0.00 2.71
926 3685 4.939368 CCAAACCCGCGTCACCCA 62.939 66.667 4.92 0.00 0.00 4.51
927 3686 3.656045 CAAACCCGCGTCACCCAC 61.656 66.667 4.92 0.00 0.00 4.61
1662 4421 4.785453 GACGCCTTCCAGCCCCAG 62.785 72.222 0.00 0.00 0.00 4.45
1725 4484 2.434884 CGCATCCACCACTTCGCT 60.435 61.111 0.00 0.00 0.00 4.93
2158 4917 1.181098 GCCAAAGAGGGAGCTTGCAA 61.181 55.000 0.00 0.00 38.09 4.08
2298 5057 1.202177 GCGGTGCCATGTAAGATGTTG 60.202 52.381 0.00 0.00 0.00 3.33
2335 5094 1.278637 GGCGAGTTGTTGAACCACG 59.721 57.895 0.00 0.00 36.27 4.94
2385 5144 1.317613 TGGCATTTGCGAGAGTGTTT 58.682 45.000 0.00 0.00 43.26 2.83
2429 5188 0.744281 AAGGTTTTTGTGCTGTCGGG 59.256 50.000 0.00 0.00 0.00 5.14
2430 5189 1.106944 AGGTTTTTGTGCTGTCGGGG 61.107 55.000 0.00 0.00 0.00 5.73
2511 5270 5.737063 GCAATACTTGTATGAAATGCTGGGG 60.737 44.000 7.51 0.00 0.00 4.96
2917 5676 0.615850 AGGAGAAGGTGCTGGCTTAC 59.384 55.000 0.00 0.00 0.00 2.34
2946 5705 1.358046 GAAGGCTCCGCATGCATTC 59.642 57.895 19.57 7.62 42.43 2.67
3043 5802 3.753797 GGTCCTCCAAGAAAGTGATCAAC 59.246 47.826 0.00 0.00 0.00 3.18
3083 5842 1.889170 GGGGAAAACAGCAAAGAGGAG 59.111 52.381 0.00 0.00 0.00 3.69
3159 5918 3.051479 CAGCGCATGGTCAGTGCA 61.051 61.111 11.47 0.00 44.55 4.57
3177 5936 4.940046 AGTGCAATAGACAGTGAATTGGAG 59.060 41.667 14.78 0.00 32.58 3.86
3218 5977 9.847224 AGTGGATAAAGAAAAACTTCAGAAGTA 57.153 29.630 16.46 0.00 41.91 2.24
3237 5996 4.455606 AGTATAGAAAGACATGGCTTGGC 58.544 43.478 16.33 10.49 0.00 4.52
3999 6760 3.768757 AGTCACAGGAGGAGATTGAAGAG 59.231 47.826 0.00 0.00 0.00 2.85
4053 6814 8.056407 ACTTGGCTAAGAAACTTATGAATTCC 57.944 34.615 17.63 0.00 37.36 3.01
4179 6940 4.236527 GGGAAAGTGTATCATTGTCCCT 57.763 45.455 11.65 0.00 40.17 4.20
4351 7127 7.607991 AGAGAATGTTTAGTTGTCTGTTATGGG 59.392 37.037 0.00 0.00 29.19 4.00
4375 7151 6.072286 GGTTGCTGATATTCCTATCATGTTGG 60.072 42.308 0.00 0.00 42.17 3.77
4398 8864 2.949447 ACCCTATTTGATCACATGCCC 58.051 47.619 4.56 0.00 0.00 5.36
4422 8890 6.491745 CCAGTTATGCAGGAACTCTCTAGATA 59.508 42.308 12.63 0.00 34.60 1.98
4474 8942 7.654022 TTTCTTCTTTGGTACTGGACAATTT 57.346 32.000 0.00 0.00 0.00 1.82
4497 8965 8.519799 TTTTGAGTTGTTCCAGAAATCTTACT 57.480 30.769 0.00 0.00 0.00 2.24
4510 8979 7.910683 CCAGAAATCTTACTTTCCGCTTAATTC 59.089 37.037 0.00 0.00 36.06 2.17
4527 8996 9.626045 CGCTTAATTCCTTCAGTTTCTTTTAAT 57.374 29.630 0.00 0.00 0.00 1.40
4562 9031 8.304596 TGTTATTACTCTACCTTGAGTTCACAG 58.695 37.037 2.44 0.00 44.01 3.66
4626 9095 4.578516 TCAACATGTTTGGTAGGACAGTTG 59.421 41.667 8.77 0.00 36.88 3.16
4649 9126 6.126409 TGTGGGGAACTTGTATGATATTTCC 58.874 40.000 0.00 0.00 33.15 3.13
4707 9184 8.846943 TGTATATTTTCTCTTGCTTCAGTGAA 57.153 30.769 5.25 5.25 0.00 3.18
4747 9224 4.002982 CTGTATAACTGAGTTGCTTGCCA 58.997 43.478 8.33 0.00 0.00 4.92
4753 9260 0.463620 TGAGTTGCTTGCCAAAACCC 59.536 50.000 0.00 0.00 34.68 4.11
4758 9265 1.114722 TGCTTGCCAAAACCCTCAGG 61.115 55.000 0.00 0.00 40.04 3.86
4773 9280 3.432890 CCCTCAGGGCTATCTTCTTTGAC 60.433 52.174 0.00 0.00 35.35 3.18
4783 9290 7.336931 GGGCTATCTTCTTTGACATGTCTTTAA 59.663 37.037 25.55 15.54 0.00 1.52
4784 9291 8.730680 GGCTATCTTCTTTGACATGTCTTTAAA 58.269 33.333 25.55 16.45 0.00 1.52
4806 9316 7.749539 AAAATCTTAACTTGTCAAACAACCG 57.250 32.000 0.00 0.00 33.96 4.44
4820 9330 2.436417 ACAACCGATTGACATCCCTTG 58.564 47.619 0.00 0.00 39.30 3.61
4851 9361 5.511088 AAACTCGTTTCTATGCTTACACG 57.489 39.130 0.00 0.00 0.00 4.49
4868 9378 4.175787 ACACGAATCTTCAGGTGTACTC 57.824 45.455 0.00 0.00 0.00 2.59
4891 9410 5.702670 TCTGTCTGCTTTCCACTTCAATTAG 59.297 40.000 0.00 0.00 0.00 1.73
4907 9426 9.846248 ACTTCAATTAGTTGCTATGTTTTGATC 57.154 29.630 0.00 0.00 35.26 2.92
4912 9431 7.701539 TTAGTTGCTATGTTTTGATCATGGT 57.298 32.000 0.00 0.00 0.00 3.55
4914 9433 5.711506 AGTTGCTATGTTTTGATCATGGTGA 59.288 36.000 0.00 0.00 0.00 4.02
4967 9661 2.032550 GGTTCTGATCATTCATGGCACG 59.967 50.000 0.00 0.00 0.00 5.34
5040 9737 7.815840 TCACTTATGAAACCAAACATTCAGA 57.184 32.000 0.00 0.00 38.80 3.27
5050 9747 9.912634 GAAACCAAACATTCAGAATTTATCAGA 57.087 29.630 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202631 ACAGTTTGATTTGGGGGTTAGCTA 60.203 41.667 0.00 0.00 0.00 3.32
1 2 3.165071 CAGTTTGATTTGGGGGTTAGCT 58.835 45.455 0.00 0.00 0.00 3.32
3 4 5.335348 CGTAACAGTTTGATTTGGGGGTTAG 60.335 44.000 0.00 0.00 0.00 2.34
4 5 4.519730 CGTAACAGTTTGATTTGGGGGTTA 59.480 41.667 0.00 0.00 0.00 2.85
5 6 3.319689 CGTAACAGTTTGATTTGGGGGTT 59.680 43.478 0.00 0.00 0.00 4.11
6 7 2.888414 CGTAACAGTTTGATTTGGGGGT 59.112 45.455 0.00 0.00 0.00 4.95
7 8 2.230266 CCGTAACAGTTTGATTTGGGGG 59.770 50.000 0.00 0.00 0.00 5.40
10 11 3.243234 TGTGCCGTAACAGTTTGATTTGG 60.243 43.478 0.00 0.00 0.00 3.28
11 12 3.958704 TGTGCCGTAACAGTTTGATTTG 58.041 40.909 0.00 0.00 0.00 2.32
12 13 4.846779 ATGTGCCGTAACAGTTTGATTT 57.153 36.364 0.00 0.00 32.52 2.17
13 14 4.846779 AATGTGCCGTAACAGTTTGATT 57.153 36.364 0.00 0.00 32.52 2.57
14 15 4.846779 AAATGTGCCGTAACAGTTTGAT 57.153 36.364 0.00 0.00 34.94 2.57
15 16 4.336993 AGAAAATGTGCCGTAACAGTTTGA 59.663 37.500 15.11 0.00 45.39 2.69
16 17 4.606961 AGAAAATGTGCCGTAACAGTTTG 58.393 39.130 15.11 0.00 45.39 2.93
18 19 4.084223 CGTAGAAAATGTGCCGTAACAGTT 60.084 41.667 0.00 0.00 39.85 3.16
19 20 3.430895 CGTAGAAAATGTGCCGTAACAGT 59.569 43.478 0.00 0.00 32.52 3.55
20 21 3.723835 GCGTAGAAAATGTGCCGTAACAG 60.724 47.826 0.00 0.00 32.52 3.16
21 22 2.158058 GCGTAGAAAATGTGCCGTAACA 59.842 45.455 0.00 0.00 0.00 2.41
22 23 2.765918 GCGTAGAAAATGTGCCGTAAC 58.234 47.619 0.00 0.00 0.00 2.50
23 24 1.390803 CGCGTAGAAAATGTGCCGTAA 59.609 47.619 0.00 0.00 0.00 3.18
24 25 0.993532 CGCGTAGAAAATGTGCCGTA 59.006 50.000 0.00 0.00 0.00 4.02
25 26 1.632046 CCGCGTAGAAAATGTGCCGT 61.632 55.000 4.92 0.00 0.00 5.68
26 27 1.060308 CCGCGTAGAAAATGTGCCG 59.940 57.895 4.92 0.00 0.00 5.69
27 28 1.226295 GCCGCGTAGAAAATGTGCC 60.226 57.895 4.92 0.00 0.00 5.01
28 29 0.247695 GAGCCGCGTAGAAAATGTGC 60.248 55.000 4.92 0.00 0.00 4.57
29 30 0.025001 CGAGCCGCGTAGAAAATGTG 59.975 55.000 4.92 0.00 34.64 3.21
30 31 1.082117 CCGAGCCGCGTAGAAAATGT 61.082 55.000 4.92 0.00 38.67 2.71
31 32 0.804544 TCCGAGCCGCGTAGAAAATG 60.805 55.000 4.92 0.00 38.67 2.32
32 33 0.108520 TTCCGAGCCGCGTAGAAAAT 60.109 50.000 4.92 0.00 38.67 1.82
33 34 0.734942 CTTCCGAGCCGCGTAGAAAA 60.735 55.000 4.92 0.00 38.67 2.29
34 35 1.153901 CTTCCGAGCCGCGTAGAAA 60.154 57.895 4.92 0.00 38.67 2.52
35 36 1.870055 AACTTCCGAGCCGCGTAGAA 61.870 55.000 4.92 0.00 38.67 2.10
36 37 2.262471 GAACTTCCGAGCCGCGTAGA 62.262 60.000 4.92 0.00 38.67 2.59
37 38 1.872679 GAACTTCCGAGCCGCGTAG 60.873 63.158 4.92 0.00 38.67 3.51
38 39 1.026182 TAGAACTTCCGAGCCGCGTA 61.026 55.000 4.92 0.00 38.67 4.42
39 40 2.267681 CTAGAACTTCCGAGCCGCGT 62.268 60.000 4.92 0.00 38.67 6.01
40 41 1.586564 CTAGAACTTCCGAGCCGCG 60.587 63.158 0.00 0.00 40.47 6.46
41 42 1.227002 CCTAGAACTTCCGAGCCGC 60.227 63.158 0.00 0.00 0.00 6.53
42 43 1.227002 GCCTAGAACTTCCGAGCCG 60.227 63.158 0.00 0.00 0.00 5.52
43 44 0.179097 CTGCCTAGAACTTCCGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
44 45 0.179097 CCTGCCTAGAACTTCCGAGC 60.179 60.000 0.00 0.00 0.00 5.03
45 46 0.461961 CCCTGCCTAGAACTTCCGAG 59.538 60.000 0.00 0.00 0.00 4.63
46 47 1.614241 GCCCTGCCTAGAACTTCCGA 61.614 60.000 0.00 0.00 0.00 4.55
47 48 1.153349 GCCCTGCCTAGAACTTCCG 60.153 63.158 0.00 0.00 0.00 4.30
48 49 0.107459 CAGCCCTGCCTAGAACTTCC 60.107 60.000 0.00 0.00 0.00 3.46
49 50 0.107459 CCAGCCCTGCCTAGAACTTC 60.107 60.000 0.00 0.00 0.00 3.01
50 51 0.547712 TCCAGCCCTGCCTAGAACTT 60.548 55.000 0.00 0.00 0.00 2.66
51 52 0.547712 TTCCAGCCCTGCCTAGAACT 60.548 55.000 0.00 0.00 0.00 3.01
52 53 0.107459 CTTCCAGCCCTGCCTAGAAC 60.107 60.000 0.00 0.00 0.00 3.01
53 54 0.547712 ACTTCCAGCCCTGCCTAGAA 60.548 55.000 0.00 0.00 0.00 2.10
54 55 0.547712 AACTTCCAGCCCTGCCTAGA 60.548 55.000 0.00 0.00 0.00 2.43
55 56 0.107459 GAACTTCCAGCCCTGCCTAG 60.107 60.000 0.00 0.00 0.00 3.02
56 57 1.562672 GGAACTTCCAGCCCTGCCTA 61.563 60.000 2.62 0.00 36.28 3.93
57 58 2.759795 GAACTTCCAGCCCTGCCT 59.240 61.111 0.00 0.00 0.00 4.75
58 59 2.361737 GGAACTTCCAGCCCTGCC 60.362 66.667 2.62 0.00 36.28 4.85
59 60 2.747855 CGGAACTTCCAGCCCTGC 60.748 66.667 8.59 0.00 35.91 4.85
60 61 2.045926 CCGGAACTTCCAGCCCTG 60.046 66.667 8.59 0.00 35.91 4.45
61 62 3.330720 CCCGGAACTTCCAGCCCT 61.331 66.667 0.73 0.00 35.91 5.19
62 63 4.426313 CCCCGGAACTTCCAGCCC 62.426 72.222 0.73 0.00 35.91 5.19
63 64 2.708593 AAACCCCGGAACTTCCAGCC 62.709 60.000 0.73 0.00 35.91 4.85
64 65 0.037160 TAAACCCCGGAACTTCCAGC 59.963 55.000 0.73 0.00 35.91 4.85
65 66 1.072648 TGTAAACCCCGGAACTTCCAG 59.927 52.381 0.73 0.00 35.91 3.86
66 67 1.138568 TGTAAACCCCGGAACTTCCA 58.861 50.000 0.73 0.00 35.91 3.53
67 68 2.275134 TTGTAAACCCCGGAACTTCC 57.725 50.000 0.73 0.00 0.00 3.46
68 69 3.479489 TCTTTGTAAACCCCGGAACTTC 58.521 45.455 0.73 0.00 0.00 3.01
69 70 3.117776 ACTCTTTGTAAACCCCGGAACTT 60.118 43.478 0.73 0.00 0.00 2.66
70 71 2.440627 ACTCTTTGTAAACCCCGGAACT 59.559 45.455 0.73 0.00 0.00 3.01
71 72 2.854963 ACTCTTTGTAAACCCCGGAAC 58.145 47.619 0.73 0.00 0.00 3.62
72 73 3.581265 AACTCTTTGTAAACCCCGGAA 57.419 42.857 0.73 0.00 0.00 4.30
73 74 3.215975 CAAACTCTTTGTAAACCCCGGA 58.784 45.455 0.73 0.00 35.94 5.14
74 75 2.295070 CCAAACTCTTTGTAAACCCCGG 59.705 50.000 0.00 0.00 38.98 5.73
75 76 3.004002 GTCCAAACTCTTTGTAAACCCCG 59.996 47.826 0.00 0.00 38.98 5.73
76 77 3.319972 GGTCCAAACTCTTTGTAAACCCC 59.680 47.826 0.00 0.00 38.98 4.95
77 78 3.955551 TGGTCCAAACTCTTTGTAAACCC 59.044 43.478 0.00 0.00 38.98 4.11
78 79 5.585820 TTGGTCCAAACTCTTTGTAAACC 57.414 39.130 0.40 0.00 38.98 3.27
79 80 8.487313 AATTTTGGTCCAAACTCTTTGTAAAC 57.513 30.769 16.88 0.00 38.98 2.01
83 84 9.758651 GTTATAATTTTGGTCCAAACTCTTTGT 57.241 29.630 16.88 9.06 38.98 2.83
84 85 9.203421 GGTTATAATTTTGGTCCAAACTCTTTG 57.797 33.333 16.88 0.00 40.32 2.77
85 86 9.154632 AGGTTATAATTTTGGTCCAAACTCTTT 57.845 29.630 16.88 10.45 32.79 2.52
86 87 8.721133 AGGTTATAATTTTGGTCCAAACTCTT 57.279 30.769 16.88 12.50 32.79 2.85
87 88 8.170730 AGAGGTTATAATTTTGGTCCAAACTCT 58.829 33.333 16.88 17.40 32.79 3.24
88 89 8.349568 AGAGGTTATAATTTTGGTCCAAACTC 57.650 34.615 16.88 15.65 32.79 3.01
89 90 8.170730 AGAGAGGTTATAATTTTGGTCCAAACT 58.829 33.333 16.88 8.99 32.79 2.66
90 91 8.349568 AGAGAGGTTATAATTTTGGTCCAAAC 57.650 34.615 16.88 4.24 32.79 2.93
91 92 8.950007 AAGAGAGGTTATAATTTTGGTCCAAA 57.050 30.769 13.26 13.26 0.00 3.28
95 96 9.952188 GCATTAAGAGAGGTTATAATTTTGGTC 57.048 33.333 0.00 0.00 0.00 4.02
96 97 9.474313 TGCATTAAGAGAGGTTATAATTTTGGT 57.526 29.630 0.00 0.00 0.00 3.67
97 98 9.736023 GTGCATTAAGAGAGGTTATAATTTTGG 57.264 33.333 0.00 0.00 0.00 3.28
98 99 9.438291 CGTGCATTAAGAGAGGTTATAATTTTG 57.562 33.333 0.00 0.00 0.00 2.44
99 100 8.621286 CCGTGCATTAAGAGAGGTTATAATTTT 58.379 33.333 0.00 0.00 0.00 1.82
100 101 7.990886 TCCGTGCATTAAGAGAGGTTATAATTT 59.009 33.333 0.00 0.00 0.00 1.82
101 102 7.506114 TCCGTGCATTAAGAGAGGTTATAATT 58.494 34.615 0.00 0.00 0.00 1.40
102 103 7.062749 TCCGTGCATTAAGAGAGGTTATAAT 57.937 36.000 0.00 0.00 0.00 1.28
103 104 6.462487 CCTCCGTGCATTAAGAGAGGTTATAA 60.462 42.308 0.00 0.00 36.87 0.98
104 105 5.010719 CCTCCGTGCATTAAGAGAGGTTATA 59.989 44.000 0.00 0.00 36.87 0.98
105 106 4.202264 CCTCCGTGCATTAAGAGAGGTTAT 60.202 45.833 0.00 0.00 36.87 1.89
106 107 3.132289 CCTCCGTGCATTAAGAGAGGTTA 59.868 47.826 0.00 0.00 36.87 2.85
107 108 2.093447 CCTCCGTGCATTAAGAGAGGTT 60.093 50.000 0.00 0.00 36.87 3.50
108 109 1.482593 CCTCCGTGCATTAAGAGAGGT 59.517 52.381 0.00 0.00 36.87 3.85
109 110 1.482593 ACCTCCGTGCATTAAGAGAGG 59.517 52.381 12.35 12.35 45.23 3.69
110 111 2.969628 ACCTCCGTGCATTAAGAGAG 57.030 50.000 0.00 0.00 0.00 3.20
111 112 3.007506 TGAAACCTCCGTGCATTAAGAGA 59.992 43.478 0.00 0.00 0.00 3.10
112 113 3.334691 TGAAACCTCCGTGCATTAAGAG 58.665 45.455 0.00 0.00 0.00 2.85
113 114 3.410631 TGAAACCTCCGTGCATTAAGA 57.589 42.857 0.00 0.00 0.00 2.10
114 115 3.365969 GGTTGAAACCTCCGTGCATTAAG 60.366 47.826 4.92 0.00 45.75 1.85
115 116 2.554893 GGTTGAAACCTCCGTGCATTAA 59.445 45.455 4.92 0.00 45.75 1.40
116 117 2.156098 GGTTGAAACCTCCGTGCATTA 58.844 47.619 4.92 0.00 45.75 1.90
117 118 0.958822 GGTTGAAACCTCCGTGCATT 59.041 50.000 4.92 0.00 45.75 3.56
118 119 2.641197 GGTTGAAACCTCCGTGCAT 58.359 52.632 4.92 0.00 45.75 3.96
119 120 4.150994 GGTTGAAACCTCCGTGCA 57.849 55.556 4.92 0.00 45.75 4.57
125 126 5.766103 GGAACTTCCAAGGGTTGAAACCTC 61.766 50.000 0.37 2.89 41.80 3.85
126 127 3.944212 GGAACTTCCAAGGGTTGAAACCT 60.944 47.826 11.86 0.00 41.80 3.50
127 128 2.364324 GGAACTTCCAAGGGTTGAAACC 59.636 50.000 3.47 3.47 41.56 3.27
128 129 2.364324 GGGAACTTCCAAGGGTTGAAAC 59.636 50.000 10.11 0.00 38.64 2.78
129 130 2.673258 GGGAACTTCCAAGGGTTGAAA 58.327 47.619 10.11 0.00 38.64 2.69
130 131 1.477923 CGGGAACTTCCAAGGGTTGAA 60.478 52.381 10.11 0.00 38.64 2.69
131 132 0.109723 CGGGAACTTCCAAGGGTTGA 59.890 55.000 10.11 0.00 38.64 3.18
132 133 0.893727 CCGGGAACTTCCAAGGGTTG 60.894 60.000 10.11 0.00 38.64 3.77
133 134 1.458927 CCGGGAACTTCCAAGGGTT 59.541 57.895 10.11 0.00 38.64 4.11
134 135 2.535331 CCCGGGAACTTCCAAGGGT 61.535 63.158 18.48 0.00 45.36 4.34
135 136 2.355115 CCCGGGAACTTCCAAGGG 59.645 66.667 18.48 20.21 45.24 3.95
136 137 0.916809 ATACCCGGGAACTTCCAAGG 59.083 55.000 32.02 11.19 38.64 3.61
137 138 1.134189 GGATACCCGGGAACTTCCAAG 60.134 57.143 32.02 0.00 38.64 3.61
138 139 0.913924 GGATACCCGGGAACTTCCAA 59.086 55.000 32.02 1.53 38.64 3.53
139 140 0.252789 TGGATACCCGGGAACTTCCA 60.253 55.000 32.02 27.21 38.64 3.53
140 141 1.137697 ATGGATACCCGGGAACTTCC 58.862 55.000 32.02 25.04 35.23 3.46
141 142 1.489230 ACATGGATACCCGGGAACTTC 59.511 52.381 32.02 17.11 34.29 3.01
142 143 1.591768 ACATGGATACCCGGGAACTT 58.408 50.000 32.02 7.13 34.29 2.66
143 144 2.326428 CTACATGGATACCCGGGAACT 58.674 52.381 32.02 11.19 34.29 3.01
144 145 2.044758 ACTACATGGATACCCGGGAAC 58.955 52.381 32.02 17.30 34.29 3.62
145 146 2.482414 ACTACATGGATACCCGGGAA 57.518 50.000 32.02 7.31 34.29 3.97
146 147 2.436542 CAAACTACATGGATACCCGGGA 59.563 50.000 32.02 11.89 34.29 5.14
147 148 2.846193 CAAACTACATGGATACCCGGG 58.154 52.381 22.25 22.25 34.29 5.73
148 149 2.218603 GCAAACTACATGGATACCCGG 58.781 52.381 0.00 0.00 34.29 5.73
149 150 2.912771 TGCAAACTACATGGATACCCG 58.087 47.619 0.00 0.00 34.29 5.28
150 151 4.632538 GTTGCAAACTACATGGATACCC 57.367 45.455 0.00 0.00 45.32 3.69
164 165 3.563808 AGAGTTTACATCGCAGTTGCAAA 59.436 39.130 0.00 0.00 42.21 3.68
165 166 3.138304 AGAGTTTACATCGCAGTTGCAA 58.862 40.909 0.00 0.00 42.21 4.08
166 167 2.736721 GAGAGTTTACATCGCAGTTGCA 59.263 45.455 4.84 0.00 42.21 4.08
167 168 2.996621 AGAGAGTTTACATCGCAGTTGC 59.003 45.455 0.00 0.00 37.78 4.17
168 169 5.864474 ACTAAGAGAGTTTACATCGCAGTTG 59.136 40.000 0.00 0.00 33.13 3.16
169 170 6.026947 ACTAAGAGAGTTTACATCGCAGTT 57.973 37.500 0.00 0.00 33.13 3.16
170 171 5.393243 GGACTAAGAGAGTTTACATCGCAGT 60.393 44.000 0.00 0.00 39.06 4.40
171 172 5.038033 GGACTAAGAGAGTTTACATCGCAG 58.962 45.833 0.00 0.00 39.06 5.18
172 173 4.438336 CGGACTAAGAGAGTTTACATCGCA 60.438 45.833 0.00 0.00 39.06 5.10
173 174 4.036352 CGGACTAAGAGAGTTTACATCGC 58.964 47.826 0.00 0.00 39.06 4.58
174 175 5.163784 TGTCGGACTAAGAGAGTTTACATCG 60.164 44.000 9.88 0.00 39.06 3.84
175 176 6.093771 TCTGTCGGACTAAGAGAGTTTACATC 59.906 42.308 9.88 0.00 39.06 3.06
176 177 5.944599 TCTGTCGGACTAAGAGAGTTTACAT 59.055 40.000 9.88 0.00 39.06 2.29
177 178 5.311265 TCTGTCGGACTAAGAGAGTTTACA 58.689 41.667 9.88 0.00 39.06 2.41
178 179 5.876612 TCTGTCGGACTAAGAGAGTTTAC 57.123 43.478 9.88 0.00 39.06 2.01
179 180 5.182760 GGTTCTGTCGGACTAAGAGAGTTTA 59.817 44.000 9.88 0.00 39.06 2.01
180 181 4.022155 GGTTCTGTCGGACTAAGAGAGTTT 60.022 45.833 9.88 0.00 39.06 2.66
181 182 3.506844 GGTTCTGTCGGACTAAGAGAGTT 59.493 47.826 9.88 0.00 39.06 3.01
182 183 3.083293 GGTTCTGTCGGACTAAGAGAGT 58.917 50.000 9.88 0.00 42.90 3.24
183 184 3.127895 CAGGTTCTGTCGGACTAAGAGAG 59.872 52.174 9.88 0.00 0.00 3.20
184 185 3.082548 CAGGTTCTGTCGGACTAAGAGA 58.917 50.000 9.88 0.74 0.00 3.10
185 186 2.416162 GCAGGTTCTGTCGGACTAAGAG 60.416 54.545 9.88 0.00 33.43 2.85
186 187 1.544691 GCAGGTTCTGTCGGACTAAGA 59.455 52.381 9.88 1.86 33.43 2.10
187 188 1.404315 GGCAGGTTCTGTCGGACTAAG 60.404 57.143 9.88 0.00 33.43 2.18
188 189 0.606604 GGCAGGTTCTGTCGGACTAA 59.393 55.000 9.88 1.25 33.43 2.24
189 190 1.255667 GGGCAGGTTCTGTCGGACTA 61.256 60.000 9.88 0.00 36.90 2.59
190 191 2.584391 GGGCAGGTTCTGTCGGACT 61.584 63.158 9.88 0.00 36.90 3.85
191 192 2.047179 GGGCAGGTTCTGTCGGAC 60.047 66.667 0.00 0.00 36.90 4.79
192 193 3.691342 CGGGCAGGTTCTGTCGGA 61.691 66.667 1.62 0.00 38.41 4.55
193 194 4.760047 CCGGGCAGGTTCTGTCGG 62.760 72.222 13.65 13.65 41.00 4.79
194 195 3.234630 TTCCGGGCAGGTTCTGTCG 62.235 63.158 0.00 0.00 36.90 4.35
195 196 1.376037 CTTCCGGGCAGGTTCTGTC 60.376 63.158 0.00 0.00 41.99 3.51
196 197 2.750350 CTTCCGGGCAGGTTCTGT 59.250 61.111 0.00 0.00 41.99 3.41
197 198 2.747855 GCTTCCGGGCAGGTTCTG 60.748 66.667 0.00 0.00 41.99 3.02
198 199 2.930562 AGCTTCCGGGCAGGTTCT 60.931 61.111 0.00 0.00 41.99 3.01
199 200 2.747855 CAGCTTCCGGGCAGGTTC 60.748 66.667 0.00 0.00 41.99 3.62
206 207 2.739996 ATCAGAGGCAGCTTCCGGG 61.740 63.158 0.00 0.00 0.00 5.73
207 208 1.523258 CATCAGAGGCAGCTTCCGG 60.523 63.158 0.00 0.00 0.00 5.14
208 209 0.392193 AACATCAGAGGCAGCTTCCG 60.392 55.000 0.00 0.00 0.00 4.30
209 210 1.377536 GAACATCAGAGGCAGCTTCC 58.622 55.000 0.00 0.00 0.00 3.46
210 211 1.339438 TGGAACATCAGAGGCAGCTTC 60.339 52.381 0.00 0.00 0.00 3.86
211 212 0.694771 TGGAACATCAGAGGCAGCTT 59.305 50.000 0.00 0.00 0.00 3.74
212 213 0.252479 CTGGAACATCAGAGGCAGCT 59.748 55.000 0.00 0.00 38.20 4.24
213 214 0.747283 CCTGGAACATCAGAGGCAGC 60.747 60.000 0.00 0.00 38.20 5.25
214 215 3.473147 CCTGGAACATCAGAGGCAG 57.527 57.895 0.00 0.00 38.20 4.85
216 217 4.232310 GCCTGGAACATCAGAGGC 57.768 61.111 0.00 0.00 44.10 4.70
217 218 3.737850 GAATAGCCTGGAACATCAGAGG 58.262 50.000 0.00 0.00 38.20 3.69
218 219 3.388308 CGAATAGCCTGGAACATCAGAG 58.612 50.000 0.00 0.00 38.20 3.35
219 220 2.103094 CCGAATAGCCTGGAACATCAGA 59.897 50.000 0.00 0.00 38.20 3.27
220 221 2.103094 TCCGAATAGCCTGGAACATCAG 59.897 50.000 0.00 0.00 38.20 2.90
221 222 2.115427 TCCGAATAGCCTGGAACATCA 58.885 47.619 0.00 0.00 38.20 3.07
222 223 2.910688 TCCGAATAGCCTGGAACATC 57.089 50.000 0.00 0.00 38.20 3.06
226 227 1.209504 CCTGTTCCGAATAGCCTGGAA 59.790 52.381 0.00 0.00 39.38 3.53
227 228 0.830648 CCTGTTCCGAATAGCCTGGA 59.169 55.000 0.00 0.00 0.00 3.86
228 229 0.541863 ACCTGTTCCGAATAGCCTGG 59.458 55.000 0.00 0.00 0.00 4.45
229 230 1.656652 CACCTGTTCCGAATAGCCTG 58.343 55.000 0.00 0.00 0.00 4.85
230 231 0.107654 GCACCTGTTCCGAATAGCCT 60.108 55.000 0.00 0.00 0.00 4.58
231 232 1.429148 CGCACCTGTTCCGAATAGCC 61.429 60.000 0.00 0.00 0.00 3.93
232 233 0.739813 ACGCACCTGTTCCGAATAGC 60.740 55.000 0.00 0.00 0.00 2.97
233 234 1.722011 AACGCACCTGTTCCGAATAG 58.278 50.000 0.00 0.00 0.00 1.73
234 235 2.995258 GTTAACGCACCTGTTCCGAATA 59.005 45.455 0.00 0.00 33.32 1.75
235 236 1.802365 GTTAACGCACCTGTTCCGAAT 59.198 47.619 0.00 0.00 33.32 3.34
236 237 1.219646 GTTAACGCACCTGTTCCGAA 58.780 50.000 0.00 0.00 33.32 4.30
237 238 0.104487 TGTTAACGCACCTGTTCCGA 59.896 50.000 0.26 0.00 33.32 4.55
238 239 0.511221 CTGTTAACGCACCTGTTCCG 59.489 55.000 0.26 0.00 33.32 4.30
239 240 0.237498 GCTGTTAACGCACCTGTTCC 59.763 55.000 14.68 0.00 33.32 3.62
240 241 1.226746 AGCTGTTAACGCACCTGTTC 58.773 50.000 19.50 0.00 33.32 3.18
241 242 1.675552 AAGCTGTTAACGCACCTGTT 58.324 45.000 19.50 6.62 35.86 3.16
242 243 2.536761 TAAGCTGTTAACGCACCTGT 57.463 45.000 19.50 1.79 0.00 4.00
243 244 3.435327 TGAATAAGCTGTTAACGCACCTG 59.565 43.478 19.50 1.31 0.00 4.00
244 245 3.670625 TGAATAAGCTGTTAACGCACCT 58.329 40.909 19.50 9.57 0.00 4.00
245 246 4.403453 CTTGAATAAGCTGTTAACGCACC 58.597 43.478 19.50 1.99 0.00 5.01
246 247 4.403453 CCTTGAATAAGCTGTTAACGCAC 58.597 43.478 19.50 5.06 32.40 5.34
247 248 3.438781 CCCTTGAATAAGCTGTTAACGCA 59.561 43.478 19.50 5.46 32.40 5.24
248 249 3.730963 GCCCTTGAATAAGCTGTTAACGC 60.731 47.826 12.53 12.53 32.40 4.84
249 250 3.689649 AGCCCTTGAATAAGCTGTTAACG 59.310 43.478 0.26 0.00 33.41 3.18
250 251 4.944317 AGAGCCCTTGAATAAGCTGTTAAC 59.056 41.667 0.00 0.00 35.23 2.01
251 252 5.045578 AGAGAGCCCTTGAATAAGCTGTTAA 60.046 40.000 0.00 0.00 35.23 2.01
252 253 4.471386 AGAGAGCCCTTGAATAAGCTGTTA 59.529 41.667 0.00 0.00 35.23 2.41
253 254 3.265479 AGAGAGCCCTTGAATAAGCTGTT 59.735 43.478 0.00 0.00 35.23 3.16
254 255 2.843113 AGAGAGCCCTTGAATAAGCTGT 59.157 45.455 0.00 0.00 35.23 4.40
255 256 3.134442 AGAGAGAGCCCTTGAATAAGCTG 59.866 47.826 0.00 0.00 35.23 4.24
256 257 3.383223 AGAGAGAGCCCTTGAATAAGCT 58.617 45.455 0.00 0.00 38.56 3.74
257 258 3.836365 AGAGAGAGCCCTTGAATAAGC 57.164 47.619 0.00 0.00 32.40 3.09
274 275 7.768120 GTCATGCCTGGGATCTAATATAAAGAG 59.232 40.741 0.00 0.00 0.00 2.85
280 281 6.243900 CAAAGTCATGCCTGGGATCTAATAT 58.756 40.000 0.00 0.00 0.00 1.28
282 283 4.467769 CAAAGTCATGCCTGGGATCTAAT 58.532 43.478 0.00 0.00 0.00 1.73
284 285 2.173356 CCAAAGTCATGCCTGGGATCTA 59.827 50.000 0.00 0.00 0.00 1.98
285 286 1.064166 CCAAAGTCATGCCTGGGATCT 60.064 52.381 0.00 0.00 0.00 2.75
290 291 1.880819 GCACCCAAAGTCATGCCTGG 61.881 60.000 0.00 0.00 31.71 4.45
291 292 1.180456 TGCACCCAAAGTCATGCCTG 61.180 55.000 0.00 0.00 37.26 4.85
343 344 2.024414 GGGGTGCATCTTGAACATACC 58.976 52.381 0.00 0.00 0.00 2.73
344 345 2.945668 GAGGGGTGCATCTTGAACATAC 59.054 50.000 0.00 0.00 0.00 2.39
350 351 4.721776 ACTATTAAGAGGGGTGCATCTTGA 59.278 41.667 9.97 3.10 36.47 3.02
364 365 5.935789 GTGTAAGGCAACCACACTATTAAGA 59.064 40.000 0.00 0.00 45.12 2.10
365 366 5.123344 GGTGTAAGGCAACCACACTATTAAG 59.877 44.000 7.05 0.00 46.77 1.85
366 367 5.005094 GGTGTAAGGCAACCACACTATTAA 58.995 41.667 7.05 0.00 46.77 1.40
368 369 3.418047 GGTGTAAGGCAACCACACTATT 58.582 45.455 7.05 0.00 46.77 1.73
369 370 3.067684 GGTGTAAGGCAACCACACTAT 57.932 47.619 7.05 0.00 46.77 2.12
370 371 2.554370 GGTGTAAGGCAACCACACTA 57.446 50.000 7.05 0.00 46.77 2.74
371 372 3.414486 GGTGTAAGGCAACCACACT 57.586 52.632 7.05 0.00 46.77 3.55
457 3205 8.652810 AGAAACCAATCTTTCACAATTCAAAG 57.347 30.769 0.00 0.00 33.26 2.77
464 3212 6.071952 GCAGGATAGAAACCAATCTTTCACAA 60.072 38.462 0.00 0.00 33.26 3.33
514 3262 9.599866 AATAATATTTGAAGCCCTTTAGTTTGC 57.400 29.630 0.00 0.00 0.00 3.68
624 3376 1.130561 GCAACGAAAAGGCGCTTCTAT 59.869 47.619 7.64 0.00 33.86 1.98
628 3380 1.008538 CAGCAACGAAAAGGCGCTT 60.009 52.632 7.64 0.00 33.86 4.68
706 3458 1.625511 GGGTATACCGGTCGGATTCT 58.374 55.000 12.40 0.00 38.96 2.40
965 3724 2.223758 GGTGCTAGTTAAGTCGGGCTAG 60.224 54.545 0.00 0.00 35.35 3.42
1662 4421 0.721718 CGAAGACGACATTGCCCTTC 59.278 55.000 0.00 0.00 42.66 3.46
1725 4484 0.882927 GCTTGGTGGCGTACAACTCA 60.883 55.000 0.00 0.00 37.78 3.41
2158 4917 0.322277 CAACCAGCAGCATCCTCTGT 60.322 55.000 0.00 0.00 36.49 3.41
2316 5075 1.433053 CGTGGTTCAACAACTCGCCA 61.433 55.000 0.00 0.00 32.50 5.69
2335 5094 3.118482 TCCTCTGATTCACTTGCATCCTC 60.118 47.826 0.00 0.00 0.00 3.71
2385 5144 2.263540 GCACGAAGAACCCCGCTA 59.736 61.111 0.00 0.00 0.00 4.26
2429 5188 3.947834 CCCTTTCAGTGGATCATACAACC 59.052 47.826 0.00 0.00 0.00 3.77
2430 5189 3.947834 CCCCTTTCAGTGGATCATACAAC 59.052 47.826 0.00 0.00 0.00 3.32
2917 5676 0.679321 GGAGCCTTCAAGCCTTCCAG 60.679 60.000 0.00 0.00 29.65 3.86
2946 5705 3.576648 GTTTGGAGTAGTCCTCTCAACG 58.423 50.000 17.62 0.00 44.30 4.10
3043 5802 3.382546 CCCTCCATTATTTGACCAAGCAG 59.617 47.826 0.00 0.00 0.00 4.24
3083 5842 8.880878 AGAAATTTGTGGGTTTAACATTACAC 57.119 30.769 0.00 1.54 0.00 2.90
3159 5918 3.266772 TGGCCTCCAATTCACTGTCTATT 59.733 43.478 3.32 0.00 0.00 1.73
3177 5936 0.529378 CCACTTGCTCAGAAATGGCC 59.471 55.000 0.00 0.00 0.00 5.36
3218 5977 3.659183 AGCCAAGCCATGTCTTTCTAT 57.341 42.857 0.00 0.00 0.00 1.98
3237 5996 4.143986 GGACCAGATCCTTTTGAGGTAG 57.856 50.000 0.00 0.00 45.22 3.18
3999 6760 0.899717 TGCTTGCCCCATCTCCAAAC 60.900 55.000 0.00 0.00 0.00 2.93
4053 6814 1.961180 ATCCTTTCCTCCGCCTCACG 61.961 60.000 0.00 0.00 43.15 4.35
4164 6925 4.522789 ACAAAACCAGGGACAATGATACAC 59.477 41.667 0.00 0.00 0.00 2.90
4179 6940 2.159170 GCAGTTTACCAGCACAAAACCA 60.159 45.455 0.00 0.00 34.39 3.67
4229 6991 7.844493 ATAATCAAAGCCATATGGTCACATT 57.156 32.000 22.79 15.56 38.53 2.71
4338 7114 3.500448 TCAGCAACCCATAACAGACAA 57.500 42.857 0.00 0.00 0.00 3.18
4351 7127 6.569226 GCCAACATGATAGGAATATCAGCAAC 60.569 42.308 0.00 0.00 39.53 4.17
4375 7151 3.503748 GGCATGTGATCAAATAGGGTAGC 59.496 47.826 0.00 0.00 0.00 3.58
4398 8864 5.843673 TCTAGAGAGTTCCTGCATAACTG 57.156 43.478 16.79 5.14 37.31 3.16
4450 8918 7.654022 AAATTGTCCAGTACCAAAGAAGAAA 57.346 32.000 0.00 0.00 0.00 2.52
4468 8936 7.785033 AGATTTCTGGAACAACTCAAAATTGT 58.215 30.769 0.00 0.00 42.07 2.71
4474 8942 8.519799 AAAGTAAGATTTCTGGAACAACTCAA 57.480 30.769 0.00 0.00 38.70 3.02
4497 8965 5.768164 AGAAACTGAAGGAATTAAGCGGAAA 59.232 36.000 0.00 0.00 0.00 3.13
4546 9015 3.393089 ACTGCTGTGAACTCAAGGTAG 57.607 47.619 0.00 0.00 0.00 3.18
4562 9031 7.117523 CAGTCTATATCAAGAATAGCCAACTGC 59.882 40.741 0.00 0.00 41.71 4.40
4605 9074 4.338118 CACAACTGTCCTACCAAACATGTT 59.662 41.667 4.92 4.92 0.00 2.71
4626 9095 5.238650 CGGAAATATCATACAAGTTCCCCAC 59.761 44.000 0.00 0.00 32.56 4.61
4649 9126 4.977963 AGCACAAAACAGAAATCATTGTCG 59.022 37.500 0.00 0.00 32.25 4.35
4680 9157 9.283768 TCACTGAAGCAAGAGAAAATATACAAA 57.716 29.630 0.00 0.00 0.00 2.83
4707 9184 8.989980 GTTATACAGTTAAGCAAGTTCTTCAGT 58.010 33.333 0.00 0.00 0.00 3.41
4721 9198 6.148811 GGCAAGCAACTCAGTTATACAGTTAA 59.851 38.462 0.00 0.00 0.00 2.01
4747 9224 3.193782 AGAAGATAGCCCTGAGGGTTTT 58.806 45.455 20.64 8.43 46.51 2.43
4753 9260 4.478206 TGTCAAAGAAGATAGCCCTGAG 57.522 45.455 0.00 0.00 0.00 3.35
4758 9265 6.749923 AAAGACATGTCAAAGAAGATAGCC 57.250 37.500 27.02 0.00 0.00 3.93
4783 9290 7.090953 TCGGTTGTTTGACAAGTTAAGATTT 57.909 32.000 0.00 0.00 39.00 2.17
4784 9291 6.687081 TCGGTTGTTTGACAAGTTAAGATT 57.313 33.333 0.00 0.00 39.00 2.40
4786 9293 6.316640 TCAATCGGTTGTTTGACAAGTTAAGA 59.683 34.615 8.54 0.00 39.00 2.10
4806 9316 2.158755 ACCGATCCAAGGGATGTCAATC 60.159 50.000 1.79 0.00 43.27 2.67
4820 9330 5.276726 GCATAGAAACGAGTTTAACCGATCC 60.277 44.000 11.59 2.44 32.11 3.36
4851 9361 5.406649 CAGACAGAGTACACCTGAAGATTC 58.593 45.833 18.36 7.97 35.69 2.52
4868 9378 4.843220 AATTGAAGTGGAAAGCAGACAG 57.157 40.909 0.00 0.00 0.00 3.51
4891 9410 5.801947 GTCACCATGATCAAAACATAGCAAC 59.198 40.000 0.00 0.00 0.00 4.17
4907 9426 7.259882 ACAATGCAAAATAGTATGTCACCATG 58.740 34.615 0.00 0.00 32.29 3.66
4912 9431 8.028354 CCAAAGACAATGCAAAATAGTATGTCA 58.972 33.333 0.00 0.00 0.00 3.58
4914 9433 6.813152 GCCAAAGACAATGCAAAATAGTATGT 59.187 34.615 0.00 0.00 0.00 2.29
4916 9435 6.934056 TGCCAAAGACAATGCAAAATAGTAT 58.066 32.000 0.00 0.00 0.00 2.12
4917 9436 6.338214 TGCCAAAGACAATGCAAAATAGTA 57.662 33.333 0.00 0.00 0.00 1.82
4919 9438 4.092383 GCTGCCAAAGACAATGCAAAATAG 59.908 41.667 0.00 0.00 32.58 1.73
4926 9620 0.318955 AACGCTGCCAAAGACAATGC 60.319 50.000 0.00 0.00 0.00 3.56
4967 9661 7.169308 CAGGACGACAGATAACATACATAAACC 59.831 40.741 0.00 0.00 0.00 3.27
5050 9747 6.441924 TCATCTCTCTCCAAGTTAATCAGGTT 59.558 38.462 0.00 0.00 0.00 3.50
5068 9765 6.919775 AAGGTTAGTAACACACTCATCTCT 57.080 37.500 14.81 0.00 38.80 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.