Multiple sequence alignment - TraesCS5D01G379700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G379700 chr5D 100.000 3272 0 0 1 3272 450576620 450579891 0.000000e+00 6043.0
1 TraesCS5D01G379700 chr5D 89.474 304 30 1 1484 1785 447508363 447508666 1.840000e-102 383.0
2 TraesCS5D01G379700 chr5D 93.077 130 7 2 233 361 450576561 450576433 4.310000e-44 189.0
3 TraesCS5D01G379700 chr5D 82.353 102 15 3 3018 3118 351335973 351335874 5.820000e-13 86.1
4 TraesCS5D01G379700 chr5A 90.611 3174 184 50 142 3272 569792448 569795550 0.000000e+00 4106.0
5 TraesCS5D01G379700 chr5A 84.615 78 8 4 3042 3118 117379196 117379122 1.260000e-09 75.0
6 TraesCS5D01G379700 chr5B 91.401 2163 123 30 310 2464 550487966 550490073 0.000000e+00 2905.0
7 TraesCS5D01G379700 chr5B 80.310 452 27 18 2419 2850 550490074 550490483 5.340000e-73 285.0
8 TraesCS5D01G379700 chr2D 86.002 943 128 4 1282 2222 372224313 372225253 0.000000e+00 1007.0
9 TraesCS5D01G379700 chr2D 83.209 935 132 16 1285 2211 372015589 372014672 0.000000e+00 833.0
10 TraesCS5D01G379700 chr2A 86.159 932 126 3 1282 2212 502934131 502935060 0.000000e+00 1003.0
11 TraesCS5D01G379700 chr2A 84.098 937 131 9 1284 2211 502825839 502824912 0.000000e+00 889.0
12 TraesCS5D01G379700 chr2B 85.381 944 132 6 1282 2222 441792920 441793860 0.000000e+00 974.0
13 TraesCS5D01G379700 chr2B 83.422 935 139 8 1285 2211 441480098 441479172 0.000000e+00 854.0
14 TraesCS5D01G379700 chr6B 83.803 142 19 4 2 141 344710964 344711103 7.370000e-27 132.0
15 TraesCS5D01G379700 chr6B 81.818 88 9 6 3033 3118 23210148 23210066 2.110000e-07 67.6
16 TraesCS5D01G379700 chr3D 80.142 141 19 7 1 138 220237918 220238052 2.690000e-16 97.1
17 TraesCS5D01G379700 chr6A 87.879 66 8 0 79 144 270302860 270302795 9.730000e-11 78.7
18 TraesCS5D01G379700 chr4D 88.525 61 7 0 79 139 172835589 172835529 1.260000e-09 75.0
19 TraesCS5D01G379700 chr3B 86.667 60 8 0 79 138 280734524 280734465 2.110000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G379700 chr5D 450576620 450579891 3271 False 6043 6043 100.0000 1 3272 1 chr5D.!!$F2 3271
1 TraesCS5D01G379700 chr5A 569792448 569795550 3102 False 4106 4106 90.6110 142 3272 1 chr5A.!!$F1 3130
2 TraesCS5D01G379700 chr5B 550487966 550490483 2517 False 1595 2905 85.8555 310 2850 2 chr5B.!!$F1 2540
3 TraesCS5D01G379700 chr2D 372224313 372225253 940 False 1007 1007 86.0020 1282 2222 1 chr2D.!!$F1 940
4 TraesCS5D01G379700 chr2D 372014672 372015589 917 True 833 833 83.2090 1285 2211 1 chr2D.!!$R1 926
5 TraesCS5D01G379700 chr2A 502934131 502935060 929 False 1003 1003 86.1590 1282 2212 1 chr2A.!!$F1 930
6 TraesCS5D01G379700 chr2A 502824912 502825839 927 True 889 889 84.0980 1284 2211 1 chr2A.!!$R1 927
7 TraesCS5D01G379700 chr2B 441792920 441793860 940 False 974 974 85.3810 1282 2222 1 chr2B.!!$F1 940
8 TraesCS5D01G379700 chr2B 441479172 441480098 926 True 854 854 83.4220 1285 2211 1 chr2B.!!$R1 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.036010 CTCTTCGTGCCAATGACCCT 60.036 55.0 0.0 0.0 0.00 4.34 F
94 95 0.040058 TGACCCTAGCCGAACCAGTA 59.960 55.0 0.0 0.0 0.00 2.74 F
249 250 0.249573 GACCCGACGTTTCAGAACCA 60.250 55.0 0.0 0.0 31.93 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 2287 3.154473 TTGATCGGAGGCGGAGGG 61.154 66.667 0.00 0.00 0.00 4.30 R
2245 2293 2.467826 GCTGCTGTTGATCGGAGGC 61.468 63.158 0.00 0.00 0.00 4.70 R
2281 2329 1.139853 GTAACATGGAGCTAGCTGGCT 59.860 52.381 26.12 26.12 46.11 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.596263 GTTTTACGCTTCTCAGTGGC 57.404 50.000 0.00 0.00 34.49 5.01
20 21 1.197036 GTTTTACGCTTCTCAGTGGCC 59.803 52.381 0.00 0.00 34.49 5.36
21 22 0.321298 TTTACGCTTCTCAGTGGCCC 60.321 55.000 0.00 0.00 34.49 5.80
22 23 2.501223 TTACGCTTCTCAGTGGCCCG 62.501 60.000 0.00 0.00 34.49 6.13
23 24 4.069232 CGCTTCTCAGTGGCCCGA 62.069 66.667 0.00 0.00 0.00 5.14
24 25 2.586792 GCTTCTCAGTGGCCCGAT 59.413 61.111 0.00 0.00 0.00 4.18
25 26 1.522580 GCTTCTCAGTGGCCCGATC 60.523 63.158 0.00 0.00 0.00 3.69
26 27 1.144936 CTTCTCAGTGGCCCGATCC 59.855 63.158 0.00 0.00 0.00 3.36
27 28 1.306141 TTCTCAGTGGCCCGATCCT 60.306 57.895 0.00 0.00 0.00 3.24
28 29 1.617018 TTCTCAGTGGCCCGATCCTG 61.617 60.000 0.00 0.00 0.00 3.86
29 30 3.083349 TCAGTGGCCCGATCCTGG 61.083 66.667 0.00 0.00 0.00 4.45
37 38 3.489391 CCCGATCCTGGGTAAAACC 57.511 57.895 0.00 0.00 44.76 3.27
38 39 0.463116 CCCGATCCTGGGTAAAACCG 60.463 60.000 0.00 0.00 44.76 4.44
39 40 0.251073 CCGATCCTGGGTAAAACCGT 59.749 55.000 0.00 0.00 39.83 4.83
40 41 1.481772 CCGATCCTGGGTAAAACCGTA 59.518 52.381 0.00 0.00 39.83 4.02
41 42 2.103601 CCGATCCTGGGTAAAACCGTAT 59.896 50.000 0.00 0.00 39.83 3.06
42 43 3.321682 CCGATCCTGGGTAAAACCGTATA 59.678 47.826 0.00 0.00 39.83 1.47
43 44 4.553323 CGATCCTGGGTAAAACCGTATAG 58.447 47.826 0.00 0.00 39.83 1.31
44 45 3.825143 TCCTGGGTAAAACCGTATAGC 57.175 47.619 0.00 0.00 39.83 2.97
45 46 3.106054 TCCTGGGTAAAACCGTATAGCA 58.894 45.455 0.00 0.00 39.83 3.49
46 47 3.118665 TCCTGGGTAAAACCGTATAGCAC 60.119 47.826 0.00 0.00 39.83 4.40
47 48 3.200483 CTGGGTAAAACCGTATAGCACC 58.800 50.000 0.00 0.00 39.83 5.01
48 49 2.839425 TGGGTAAAACCGTATAGCACCT 59.161 45.455 0.00 0.00 39.83 4.00
49 50 3.118665 TGGGTAAAACCGTATAGCACCTC 60.119 47.826 0.00 0.00 39.83 3.85
50 51 3.461061 GGTAAAACCGTATAGCACCTCC 58.539 50.000 0.00 0.00 0.00 4.30
51 52 3.133542 GGTAAAACCGTATAGCACCTCCT 59.866 47.826 0.00 0.00 0.00 3.69
52 53 2.981859 AAACCGTATAGCACCTCCTG 57.018 50.000 0.00 0.00 0.00 3.86
53 54 1.861982 AACCGTATAGCACCTCCTGT 58.138 50.000 0.00 0.00 0.00 4.00
54 55 1.861982 ACCGTATAGCACCTCCTGTT 58.138 50.000 0.00 0.00 0.00 3.16
55 56 1.480954 ACCGTATAGCACCTCCTGTTG 59.519 52.381 0.00 0.00 0.00 3.33
56 57 1.480954 CCGTATAGCACCTCCTGTTGT 59.519 52.381 0.00 0.00 0.00 3.32
57 58 2.540515 CGTATAGCACCTCCTGTTGTG 58.459 52.381 0.00 0.00 35.58 3.33
62 63 1.656441 CACCTCCTGTTGTGCTTGC 59.344 57.895 0.00 0.00 0.00 4.01
63 64 0.820891 CACCTCCTGTTGTGCTTGCT 60.821 55.000 0.00 0.00 0.00 3.91
64 65 0.536006 ACCTCCTGTTGTGCTTGCTC 60.536 55.000 0.00 0.00 0.00 4.26
65 66 0.250640 CCTCCTGTTGTGCTTGCTCT 60.251 55.000 0.00 0.00 0.00 4.09
66 67 1.602311 CTCCTGTTGTGCTTGCTCTT 58.398 50.000 0.00 0.00 0.00 2.85
67 68 1.534595 CTCCTGTTGTGCTTGCTCTTC 59.465 52.381 0.00 0.00 0.00 2.87
68 69 0.236711 CCTGTTGTGCTTGCTCTTCG 59.763 55.000 0.00 0.00 0.00 3.79
69 70 0.940126 CTGTTGTGCTTGCTCTTCGT 59.060 50.000 0.00 0.00 0.00 3.85
70 71 0.657312 TGTTGTGCTTGCTCTTCGTG 59.343 50.000 0.00 0.00 0.00 4.35
71 72 0.658536 GTTGTGCTTGCTCTTCGTGC 60.659 55.000 0.00 0.00 0.00 5.34
72 73 1.785041 TTGTGCTTGCTCTTCGTGCC 61.785 55.000 0.00 0.00 0.00 5.01
73 74 2.110835 TGCTTGCTCTTCGTGCCA 59.889 55.556 0.00 0.00 0.00 4.92
74 75 1.525765 TGCTTGCTCTTCGTGCCAA 60.526 52.632 0.00 0.00 0.00 4.52
75 76 0.890542 TGCTTGCTCTTCGTGCCAAT 60.891 50.000 0.00 0.00 0.00 3.16
76 77 0.455633 GCTTGCTCTTCGTGCCAATG 60.456 55.000 0.00 0.00 0.00 2.82
77 78 1.159285 CTTGCTCTTCGTGCCAATGA 58.841 50.000 0.00 0.00 0.00 2.57
78 79 0.874390 TTGCTCTTCGTGCCAATGAC 59.126 50.000 0.00 0.00 0.00 3.06
79 80 0.955428 TGCTCTTCGTGCCAATGACC 60.955 55.000 0.00 0.00 0.00 4.02
80 81 1.648467 GCTCTTCGTGCCAATGACCC 61.648 60.000 0.00 0.00 0.00 4.46
81 82 0.036010 CTCTTCGTGCCAATGACCCT 60.036 55.000 0.00 0.00 0.00 4.34
82 83 1.207089 CTCTTCGTGCCAATGACCCTA 59.793 52.381 0.00 0.00 0.00 3.53
83 84 1.207089 TCTTCGTGCCAATGACCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
84 85 0.392461 TTCGTGCCAATGACCCTAGC 60.392 55.000 0.00 0.00 0.00 3.42
85 86 1.819632 CGTGCCAATGACCCTAGCC 60.820 63.158 0.00 0.00 0.00 3.93
86 87 1.819632 GTGCCAATGACCCTAGCCG 60.820 63.158 0.00 0.00 0.00 5.52
87 88 1.992834 TGCCAATGACCCTAGCCGA 60.993 57.895 0.00 0.00 0.00 5.54
88 89 1.223487 GCCAATGACCCTAGCCGAA 59.777 57.895 0.00 0.00 0.00 4.30
89 90 1.095807 GCCAATGACCCTAGCCGAAC 61.096 60.000 0.00 0.00 0.00 3.95
90 91 0.463833 CCAATGACCCTAGCCGAACC 60.464 60.000 0.00 0.00 0.00 3.62
91 92 0.251916 CAATGACCCTAGCCGAACCA 59.748 55.000 0.00 0.00 0.00 3.67
92 93 0.541863 AATGACCCTAGCCGAACCAG 59.458 55.000 0.00 0.00 0.00 4.00
93 94 0.617820 ATGACCCTAGCCGAACCAGT 60.618 55.000 0.00 0.00 0.00 4.00
94 95 0.040058 TGACCCTAGCCGAACCAGTA 59.960 55.000 0.00 0.00 0.00 2.74
95 96 1.188863 GACCCTAGCCGAACCAGTAA 58.811 55.000 0.00 0.00 0.00 2.24
96 97 1.551883 GACCCTAGCCGAACCAGTAAA 59.448 52.381 0.00 0.00 0.00 2.01
97 98 1.553704 ACCCTAGCCGAACCAGTAAAG 59.446 52.381 0.00 0.00 0.00 1.85
98 99 1.134491 CCCTAGCCGAACCAGTAAAGG 60.134 57.143 0.00 0.00 0.00 3.11
99 100 1.134491 CCTAGCCGAACCAGTAAAGGG 60.134 57.143 0.00 0.00 0.00 3.95
100 101 0.906775 TAGCCGAACCAGTAAAGGGG 59.093 55.000 0.00 0.00 0.00 4.79
101 102 2.044555 GCCGAACCAGTAAAGGGGC 61.045 63.158 0.00 0.00 0.00 5.80
102 103 1.377229 CCGAACCAGTAAAGGGGCA 59.623 57.895 0.00 0.00 0.00 5.36
103 104 0.250989 CCGAACCAGTAAAGGGGCAA 60.251 55.000 0.00 0.00 0.00 4.52
104 105 0.879090 CGAACCAGTAAAGGGGCAAC 59.121 55.000 0.00 0.00 0.00 4.17
117 118 3.006677 GCAACCCTGCCCCATAGA 58.993 61.111 0.00 0.00 43.26 1.98
118 119 1.538666 GCAACCCTGCCCCATAGAT 59.461 57.895 0.00 0.00 43.26 1.98
119 120 0.538287 GCAACCCTGCCCCATAGATC 60.538 60.000 0.00 0.00 43.26 2.75
120 121 0.250467 CAACCCTGCCCCATAGATCG 60.250 60.000 0.00 0.00 0.00 3.69
121 122 2.056906 AACCCTGCCCCATAGATCGC 62.057 60.000 0.00 0.00 0.00 4.58
122 123 2.348998 CCTGCCCCATAGATCGCC 59.651 66.667 0.00 0.00 0.00 5.54
123 124 2.047844 CTGCCCCATAGATCGCCG 60.048 66.667 0.00 0.00 0.00 6.46
124 125 3.596066 CTGCCCCATAGATCGCCGG 62.596 68.421 0.00 0.00 0.00 6.13
126 127 3.314331 CCCCATAGATCGCCGGCT 61.314 66.667 26.68 6.32 0.00 5.52
127 128 2.262915 CCCATAGATCGCCGGCTC 59.737 66.667 26.68 16.75 0.00 4.70
128 129 2.262915 CCATAGATCGCCGGCTCC 59.737 66.667 26.68 13.15 0.00 4.70
129 130 2.574018 CCATAGATCGCCGGCTCCA 61.574 63.158 26.68 8.65 0.00 3.86
130 131 1.373497 CATAGATCGCCGGCTCCAC 60.373 63.158 26.68 12.96 0.00 4.02
131 132 1.832608 ATAGATCGCCGGCTCCACA 60.833 57.895 26.68 7.15 0.00 4.17
132 133 2.088674 ATAGATCGCCGGCTCCACAC 62.089 60.000 26.68 9.66 0.00 3.82
140 141 3.890674 GGCTCCACACCGACAATC 58.109 61.111 0.00 0.00 0.00 2.67
148 149 2.093711 CCACACCGACAATCATCCTACA 60.094 50.000 0.00 0.00 0.00 2.74
150 151 2.832129 ACACCGACAATCATCCTACAGT 59.168 45.455 0.00 0.00 0.00 3.55
154 155 6.322969 ACACCGACAATCATCCTACAGTATAA 59.677 38.462 0.00 0.00 0.00 0.98
158 159 6.516693 CGACAATCATCCTACAGTATAAGCCA 60.517 42.308 0.00 0.00 0.00 4.75
179 180 9.525826 AAGCCATATAATTAAAGATCTTCCCAG 57.474 33.333 8.78 0.00 0.00 4.45
180 181 7.613411 AGCCATATAATTAAAGATCTTCCCAGC 59.387 37.037 8.78 1.90 0.00 4.85
181 182 7.613411 GCCATATAATTAAAGATCTTCCCAGCT 59.387 37.037 8.78 0.00 0.00 4.24
182 183 9.525826 CCATATAATTAAAGATCTTCCCAGCTT 57.474 33.333 8.78 0.00 0.00 3.74
191 192 3.543680 TCTTCCCAGCTTTTATCGAGG 57.456 47.619 0.00 0.00 0.00 4.63
210 211 4.698575 GAGGCCCTAGAGTTGTCTAAATG 58.301 47.826 0.00 0.00 34.73 2.32
214 215 5.760743 GGCCCTAGAGTTGTCTAAATGATTC 59.239 44.000 0.00 0.00 34.73 2.52
217 218 5.463724 CCTAGAGTTGTCTAAATGATTCGGC 59.536 44.000 0.00 0.00 34.73 5.54
218 219 4.832248 AGAGTTGTCTAAATGATTCGGCA 58.168 39.130 0.00 0.00 0.00 5.69
220 221 4.579869 AGTTGTCTAAATGATTCGGCACT 58.420 39.130 0.00 0.00 0.00 4.40
236 237 2.158957 GGCACTAAATGAGATGACCCGA 60.159 50.000 0.00 0.00 0.00 5.14
242 243 2.295253 ATGAGATGACCCGACGTTTC 57.705 50.000 0.00 0.00 0.00 2.78
249 250 0.249573 GACCCGACGTTTCAGAACCA 60.250 55.000 0.00 0.00 31.93 3.67
291 292 5.946377 AGGCTTTTTAATTCACGAGATCCTT 59.054 36.000 0.00 0.00 0.00 3.36
292 293 6.030228 GGCTTTTTAATTCACGAGATCCTTG 58.970 40.000 0.00 0.00 0.00 3.61
299 300 8.737168 TTAATTCACGAGATCCTTGAAATCAT 57.263 30.769 5.59 0.00 33.13 2.45
318 319 9.415544 GAAATCATGAACAAAGCTACAAAAGAT 57.584 29.630 0.00 0.00 0.00 2.40
326 329 7.232118 ACAAAGCTACAAAAGATTATTGCCT 57.768 32.000 0.00 0.00 30.92 4.75
332 335 6.127619 GCTACAAAAGATTATTGCCTTCCACT 60.128 38.462 0.00 0.00 0.00 4.00
338 341 8.593945 AAAGATTATTGCCTTCCACTAATGAA 57.406 30.769 0.00 0.00 31.67 2.57
340 343 5.811399 TTATTGCCTTCCACTAATGAACG 57.189 39.130 0.00 0.00 0.00 3.95
389 392 3.541632 GTTCAACTCAAACTGACCCTGA 58.458 45.455 0.00 0.00 0.00 3.86
391 394 5.305585 GTTCAACTCAAACTGACCCTGATA 58.694 41.667 0.00 0.00 0.00 2.15
404 407 4.036262 TGACCCTGATATTTTTATGTGCGC 59.964 41.667 0.00 0.00 0.00 6.09
408 411 5.137403 CCTGATATTTTTATGTGCGCGTAC 58.863 41.667 21.02 21.02 0.00 3.67
414 417 0.915904 TTATGTGCGCGTACGTAAGC 59.084 50.000 30.04 21.53 42.83 3.09
419 422 0.377905 TGCGCGTACGTAAGCATCTA 59.622 50.000 28.47 11.76 42.83 1.98
435 438 3.251004 GCATCTACGATTGAATTGACCCC 59.749 47.826 0.00 0.00 0.00 4.95
449 456 5.843019 ATTGACCCCGATTCTAATACCAT 57.157 39.130 0.00 0.00 0.00 3.55
452 459 4.527038 TGACCCCGATTCTAATACCATCTC 59.473 45.833 0.00 0.00 0.00 2.75
453 460 4.489737 ACCCCGATTCTAATACCATCTCA 58.510 43.478 0.00 0.00 0.00 3.27
455 462 4.499183 CCCGATTCTAATACCATCTCAGC 58.501 47.826 0.00 0.00 0.00 4.26
457 464 4.169508 CGATTCTAATACCATCTCAGCCG 58.830 47.826 0.00 0.00 0.00 5.52
458 465 4.321304 CGATTCTAATACCATCTCAGCCGT 60.321 45.833 0.00 0.00 0.00 5.68
461 468 5.449107 TCTAATACCATCTCAGCCGTAAC 57.551 43.478 0.00 0.00 0.00 2.50
462 469 3.470645 AATACCATCTCAGCCGTAACC 57.529 47.619 0.00 0.00 0.00 2.85
463 470 1.855295 TACCATCTCAGCCGTAACCA 58.145 50.000 0.00 0.00 0.00 3.67
464 471 0.981183 ACCATCTCAGCCGTAACCAA 59.019 50.000 0.00 0.00 0.00 3.67
465 472 1.066143 ACCATCTCAGCCGTAACCAAG 60.066 52.381 0.00 0.00 0.00 3.61
466 473 1.656652 CATCTCAGCCGTAACCAAGG 58.343 55.000 0.00 0.00 0.00 3.61
467 474 0.541863 ATCTCAGCCGTAACCAAGGG 59.458 55.000 0.00 0.00 36.13 3.95
468 475 1.078426 CTCAGCCGTAACCAAGGGG 60.078 63.158 0.00 0.00 41.29 4.79
469 476 2.750237 CAGCCGTAACCAAGGGGC 60.750 66.667 0.00 0.00 45.91 5.80
496 503 6.757237 AGAATGCCAACATGACAAATGTAAA 58.243 32.000 0.00 0.00 36.36 2.01
499 506 4.689812 TGCCAACATGACAAATGTAAATGC 59.310 37.500 0.00 0.00 0.00 3.56
510 518 5.239087 ACAAATGTAAATGCAAAAAGGCCTG 59.761 36.000 5.69 0.00 0.00 4.85
527 535 2.426522 CCTGGAATGACAACGTGACAT 58.573 47.619 0.00 0.00 34.44 3.06
533 541 7.329471 CCTGGAATGACAACGTGACATATATAG 59.671 40.741 0.00 0.00 31.98 1.31
653 665 9.616156 ATGTGGGTCTAGATACGTATAGATAAG 57.384 37.037 8.34 2.37 31.39 1.73
716 729 8.455598 TTCTTACCAAAAAGAAGAAAAACACG 57.544 30.769 0.00 0.00 39.86 4.49
717 730 7.595604 TCTTACCAAAAAGAAGAAAAACACGT 58.404 30.769 0.00 0.00 32.59 4.49
719 732 6.699895 ACCAAAAAGAAGAAAAACACGTTC 57.300 33.333 0.00 0.00 0.00 3.95
983 1025 2.553727 GGCGAGCTCGGTAGGTAGG 61.554 68.421 35.10 6.68 40.23 3.18
984 1026 1.823041 GCGAGCTCGGTAGGTAGGT 60.823 63.158 35.10 0.00 40.23 3.08
985 1027 0.533755 GCGAGCTCGGTAGGTAGGTA 60.534 60.000 35.10 0.00 40.23 3.08
986 1028 1.224965 CGAGCTCGGTAGGTAGGTAC 58.775 60.000 28.40 0.00 32.30 3.34
987 1029 1.603456 GAGCTCGGTAGGTAGGTACC 58.397 60.000 2.73 2.73 46.82 3.34
988 1030 4.698898 CGAGCTCGGTAGGTAGGTACCA 62.699 59.091 28.40 0.00 42.50 3.25
2166 2214 0.461961 CCGAGATCCAGGAGTTCACC 59.538 60.000 0.00 0.00 0.00 4.02
2277 2325 2.664185 CAGCGCGGCTAGATGCAT 60.664 61.111 8.83 0.00 45.15 3.96
2278 2326 2.664185 AGCGCGGCTAGATGCATG 60.664 61.111 2.46 0.00 45.15 4.06
2279 2327 2.662857 GCGCGGCTAGATGCATGA 60.663 61.111 2.46 0.00 45.15 3.07
2280 2328 2.031516 GCGCGGCTAGATGCATGAT 61.032 57.895 2.46 0.00 45.15 2.45
2281 2329 0.737367 GCGCGGCTAGATGCATGATA 60.737 55.000 2.46 0.00 45.15 2.15
2282 2330 1.275505 CGCGGCTAGATGCATGATAG 58.724 55.000 2.46 7.56 45.15 2.08
2283 2331 1.005340 GCGGCTAGATGCATGATAGC 58.995 55.000 23.42 23.42 45.15 2.97
2445 2496 4.035091 GGGCCAAATTCTTTGTGAACAAAC 59.965 41.667 4.39 0.00 40.55 2.93
2484 2596 3.699413 TGAATCAATCATTGGTGCCAGA 58.301 40.909 0.00 0.00 31.50 3.86
2496 2608 1.609320 GGTGCCAGAGTCTTGGAGTTC 60.609 57.143 11.49 0.00 40.87 3.01
2512 2624 1.295101 TTCGGCAGCTCGAAATGGA 59.705 52.632 14.10 0.00 44.70 3.41
2572 2693 8.611654 ATTCCTTTTTGGTGAAATGAATGAAG 57.388 30.769 0.00 0.00 32.40 3.02
2634 2762 3.350833 GGAAGTCAGAAGCATGATTGGT 58.649 45.455 0.00 0.00 34.30 3.67
2636 2764 4.380233 GGAAGTCAGAAGCATGATTGGTTG 60.380 45.833 0.00 0.00 43.35 3.77
2638 2766 2.821969 GTCAGAAGCATGATTGGTTGGT 59.178 45.455 0.00 0.00 43.35 3.67
2639 2767 2.821378 TCAGAAGCATGATTGGTTGGTG 59.179 45.455 0.00 0.00 43.35 4.17
2640 2768 2.559668 CAGAAGCATGATTGGTTGGTGT 59.440 45.455 0.00 0.00 43.35 4.16
2667 2796 0.469917 ACGTGGATGGGTGGATGATC 59.530 55.000 0.00 0.00 0.00 2.92
2722 2851 0.378257 AAATGTCCATGCGATGCGAC 59.622 50.000 0.00 0.00 33.71 5.19
2764 2893 2.370519 TCTGCTGCAACTTTGGTAGGTA 59.629 45.455 3.02 0.00 0.00 3.08
2765 2894 2.744202 CTGCTGCAACTTTGGTAGGTAG 59.256 50.000 3.02 0.00 0.00 3.18
2766 2895 2.084546 GCTGCAACTTTGGTAGGTAGG 58.915 52.381 0.00 0.00 0.00 3.18
2767 2896 2.552373 GCTGCAACTTTGGTAGGTAGGT 60.552 50.000 0.00 0.00 0.00 3.08
2777 2906 5.525454 TTGGTAGGTAGGTACTGAGAAGA 57.475 43.478 0.00 0.00 41.52 2.87
2778 2907 5.525454 TGGTAGGTAGGTACTGAGAAGAA 57.475 43.478 0.00 0.00 41.52 2.52
2779 2908 5.507637 TGGTAGGTAGGTACTGAGAAGAAG 58.492 45.833 0.00 0.00 41.52 2.85
2780 2909 5.014966 TGGTAGGTAGGTACTGAGAAGAAGT 59.985 44.000 0.00 0.00 41.52 3.01
2834 2967 1.227999 TGCCACTGAAACGCTGTAGC 61.228 55.000 0.00 0.00 34.58 3.58
2867 3000 6.983890 TGCTATACATGCAGTAAAGATTTCGA 59.016 34.615 0.00 0.00 36.05 3.71
2868 3001 7.657354 TGCTATACATGCAGTAAAGATTTCGAT 59.343 33.333 0.00 0.00 36.05 3.59
2869 3002 9.140286 GCTATACATGCAGTAAAGATTTCGATA 57.860 33.333 0.00 0.00 36.05 2.92
2873 3006 8.492673 ACATGCAGTAAAGATTTCGATAAAGA 57.507 30.769 0.00 0.00 0.00 2.52
2874 3007 8.391106 ACATGCAGTAAAGATTTCGATAAAGAC 58.609 33.333 0.00 0.00 0.00 3.01
2889 3022 3.945981 AAAGACCAAAAACACAACGGT 57.054 38.095 0.00 0.00 0.00 4.83
2898 3031 7.266400 ACCAAAAACACAACGGTAATGTTATT 58.734 30.769 9.55 5.33 35.54 1.40
2904 3037 3.752222 ACAACGGTAATGTTATTTGGCGA 59.248 39.130 0.00 0.00 0.00 5.54
2930 3063 2.931649 GGGGAAGGGGGTGACGAA 60.932 66.667 0.00 0.00 0.00 3.85
2933 3066 2.047560 GAAGGGGGTGACGAACGG 60.048 66.667 0.00 0.00 0.00 4.44
2947 3080 0.454452 GAACGGACGCATTTTCCTGC 60.454 55.000 0.00 0.00 38.81 4.85
2948 3081 0.889186 AACGGACGCATTTTCCTGCT 60.889 50.000 0.00 0.00 40.06 4.24
2951 3084 1.739067 GGACGCATTTTCCTGCTAGT 58.261 50.000 0.00 0.00 40.06 2.57
2952 3085 2.084546 GGACGCATTTTCCTGCTAGTT 58.915 47.619 0.00 0.00 40.06 2.24
2953 3086 2.488153 GGACGCATTTTCCTGCTAGTTT 59.512 45.455 0.00 0.00 40.06 2.66
2954 3087 3.057526 GGACGCATTTTCCTGCTAGTTTT 60.058 43.478 0.00 0.00 40.06 2.43
2955 3088 4.155280 GGACGCATTTTCCTGCTAGTTTTA 59.845 41.667 0.00 0.00 40.06 1.52
2956 3089 5.296813 ACGCATTTTCCTGCTAGTTTTAG 57.703 39.130 0.00 0.00 40.06 1.85
2962 3095 3.671008 TCCTGCTAGTTTTAGTTGCGA 57.329 42.857 0.00 0.00 0.00 5.10
2963 3096 3.323243 TCCTGCTAGTTTTAGTTGCGAC 58.677 45.455 0.00 0.00 0.00 5.19
2967 3100 1.058695 CTAGTTTTAGTTGCGACGCGG 59.941 52.381 16.14 0.00 0.00 6.46
2983 3116 1.969064 CGGGATCAAACGGTGGCAA 60.969 57.895 0.00 0.00 0.00 4.52
2984 3117 1.883021 GGGATCAAACGGTGGCAAG 59.117 57.895 0.00 0.00 0.00 4.01
2992 3125 3.314080 TCAAACGGTGGCAAGTTTAGAAG 59.686 43.478 17.97 9.19 38.37 2.85
2993 3126 1.892209 ACGGTGGCAAGTTTAGAAGG 58.108 50.000 0.00 0.00 0.00 3.46
2996 3129 2.225727 CGGTGGCAAGTTTAGAAGGAAC 59.774 50.000 0.00 0.00 0.00 3.62
2997 3130 2.225727 GGTGGCAAGTTTAGAAGGAACG 59.774 50.000 0.00 0.00 32.38 3.95
3001 3134 3.059120 GGCAAGTTTAGAAGGAACGTGTC 60.059 47.826 0.00 0.00 38.29 3.67
3002 3135 3.808174 GCAAGTTTAGAAGGAACGTGTCT 59.192 43.478 0.00 0.00 38.29 3.41
3005 3138 6.419771 CAAGTTTAGAAGGAACGTGTCTTTC 58.580 40.000 11.77 11.77 41.53 2.62
3007 3140 5.984323 AGTTTAGAAGGAACGTGTCTTTCTC 59.016 40.000 20.14 11.64 46.79 2.87
3008 3141 3.014604 AGAAGGAACGTGTCTTTCTCG 57.985 47.619 14.71 0.00 46.79 4.04
3009 3142 2.059541 GAAGGAACGTGTCTTTCTCGG 58.940 52.381 12.18 0.00 38.87 4.63
3015 3152 1.269998 ACGTGTCTTTCTCGGGAGAAG 59.730 52.381 10.69 6.44 46.80 2.85
3019 3156 0.247736 TCTTTCTCGGGAGAAGCTGC 59.752 55.000 10.69 0.00 46.80 5.25
3024 3161 3.207669 CGGGAGAAGCTGCCATGC 61.208 66.667 5.82 0.00 42.30 4.06
3029 3166 1.679944 GGAGAAGCTGCCATGCTGTTA 60.680 52.381 0.00 0.00 43.24 2.41
3034 3171 2.022195 AGCTGCCATGCTGTTATGAAG 58.978 47.619 0.00 0.00 42.33 3.02
3041 3178 4.418392 CCATGCTGTTATGAAGAAACTGC 58.582 43.478 9.90 9.90 46.15 4.40
3049 3186 2.452600 TGAAGAAACTGCCAACCCTT 57.547 45.000 0.00 0.00 0.00 3.95
3050 3187 3.586470 TGAAGAAACTGCCAACCCTTA 57.414 42.857 0.00 0.00 0.00 2.69
3058 3195 3.456842 ACTGCCAACCCTTATACACCTA 58.543 45.455 0.00 0.00 0.00 3.08
3064 3201 4.637091 CCAACCCTTATACACCTAAAACCG 59.363 45.833 0.00 0.00 0.00 4.44
3065 3202 5.247862 CAACCCTTATACACCTAAAACCGT 58.752 41.667 0.00 0.00 0.00 4.83
3066 3203 5.503634 ACCCTTATACACCTAAAACCGTT 57.496 39.130 0.00 0.00 0.00 4.44
3078 3215 8.724229 ACACCTAAAACCGTTATCTAAATGTTC 58.276 33.333 0.00 0.00 0.00 3.18
3095 3232 1.531739 TTCGCAAATGCCAACCCCTC 61.532 55.000 0.00 0.00 37.91 4.30
3097 3234 2.659063 GCAAATGCCAACCCCTCCC 61.659 63.158 0.00 0.00 34.31 4.30
3098 3235 1.229145 CAAATGCCAACCCCTCCCA 60.229 57.895 0.00 0.00 0.00 4.37
3099 3236 1.079073 AAATGCCAACCCCTCCCAG 59.921 57.895 0.00 0.00 0.00 4.45
3100 3237 3.607084 AATGCCAACCCCTCCCAGC 62.607 63.158 0.00 0.00 0.00 4.85
3103 3240 3.646715 CCAACCCCTCCCAGCGAA 61.647 66.667 0.00 0.00 0.00 4.70
3104 3241 2.359975 CAACCCCTCCCAGCGAAC 60.360 66.667 0.00 0.00 0.00 3.95
3124 3263 1.002087 CAGTTCGCCAGTTAAGAGGGT 59.998 52.381 0.00 0.00 0.00 4.34
3131 3270 2.820197 GCCAGTTAAGAGGGTCCAAAAG 59.180 50.000 0.00 0.00 0.00 2.27
3137 3276 6.548251 CAGTTAAGAGGGTCCAAAAGGTAAAA 59.452 38.462 0.00 0.00 0.00 1.52
3138 3277 6.776116 AGTTAAGAGGGTCCAAAAGGTAAAAG 59.224 38.462 0.00 0.00 0.00 2.27
3139 3278 5.397553 AAGAGGGTCCAAAAGGTAAAAGA 57.602 39.130 0.00 0.00 0.00 2.52
3140 3279 4.986783 AGAGGGTCCAAAAGGTAAAAGAG 58.013 43.478 0.00 0.00 0.00 2.85
3142 3281 3.725267 AGGGTCCAAAAGGTAAAAGAGGA 59.275 43.478 0.00 0.00 0.00 3.71
3143 3282 4.357097 AGGGTCCAAAAGGTAAAAGAGGAT 59.643 41.667 0.00 0.00 0.00 3.24
3144 3283 4.462834 GGGTCCAAAAGGTAAAAGAGGATG 59.537 45.833 0.00 0.00 0.00 3.51
3145 3284 5.321927 GGTCCAAAAGGTAAAAGAGGATGA 58.678 41.667 0.00 0.00 0.00 2.92
3187 3327 5.309282 ACCATCTTATTCCCATCTCTTCTCC 59.691 44.000 0.00 0.00 0.00 3.71
3188 3328 5.547276 CCATCTTATTCCCATCTCTTCTCCT 59.453 44.000 0.00 0.00 0.00 3.69
3189 3329 6.044171 CCATCTTATTCCCATCTCTTCTCCTT 59.956 42.308 0.00 0.00 0.00 3.36
3192 3332 6.553100 TCTTATTCCCATCTCTTCTCCTTCTC 59.447 42.308 0.00 0.00 0.00 2.87
3211 3351 2.154074 ACTCCCCACCTTGTCCACC 61.154 63.158 0.00 0.00 0.00 4.61
3212 3352 1.847968 CTCCCCACCTTGTCCACCT 60.848 63.158 0.00 0.00 0.00 4.00
3213 3353 0.546747 CTCCCCACCTTGTCCACCTA 60.547 60.000 0.00 0.00 0.00 3.08
3219 3359 2.154462 CACCTTGTCCACCTAAGCAAG 58.846 52.381 0.00 0.00 38.33 4.01
3226 3366 3.195661 GTCCACCTAAGCAAGTTATCCG 58.804 50.000 0.00 0.00 0.00 4.18
3227 3367 1.940613 CCACCTAAGCAAGTTATCCGC 59.059 52.381 0.00 0.00 0.00 5.54
3230 3370 3.248602 CACCTAAGCAAGTTATCCGCATC 59.751 47.826 0.00 0.00 0.00 3.91
3232 3372 2.309528 AAGCAAGTTATCCGCATCGA 57.690 45.000 0.00 0.00 0.00 3.59
3237 3377 2.154854 AGTTATCCGCATCGACATGG 57.845 50.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.197036 GGCCACTGAGAAGCGTAAAAC 59.803 52.381 0.00 0.00 0.00 2.43
1 2 1.519408 GGCCACTGAGAAGCGTAAAA 58.481 50.000 0.00 0.00 0.00 1.52
2 3 0.321298 GGGCCACTGAGAAGCGTAAA 60.321 55.000 4.39 0.00 0.00 2.01
3 4 1.295423 GGGCCACTGAGAAGCGTAA 59.705 57.895 4.39 0.00 0.00 3.18
4 5 2.978824 GGGCCACTGAGAAGCGTA 59.021 61.111 4.39 0.00 0.00 4.42
5 6 4.379243 CGGGCCACTGAGAAGCGT 62.379 66.667 4.39 0.00 0.00 5.07
6 7 3.376935 ATCGGGCCACTGAGAAGCG 62.377 63.158 4.39 0.00 34.96 4.68
7 8 1.522580 GATCGGGCCACTGAGAAGC 60.523 63.158 4.39 0.00 34.96 3.86
8 9 1.144936 GGATCGGGCCACTGAGAAG 59.855 63.158 4.39 0.00 34.96 2.85
9 10 1.306141 AGGATCGGGCCACTGAGAA 60.306 57.895 4.39 0.00 34.96 2.87
10 11 2.060383 CAGGATCGGGCCACTGAGA 61.060 63.158 4.39 0.00 34.96 3.27
11 12 2.503061 CAGGATCGGGCCACTGAG 59.497 66.667 4.39 0.00 34.96 3.35
12 13 3.083349 CCAGGATCGGGCCACTGA 61.083 66.667 4.39 0.00 36.20 3.41
13 14 4.181010 CCCAGGATCGGGCCACTG 62.181 72.222 4.39 5.94 40.07 3.66
20 21 0.251073 ACGGTTTTACCCAGGATCGG 59.749 55.000 0.00 0.00 33.75 4.18
21 22 2.965572 TACGGTTTTACCCAGGATCG 57.034 50.000 0.00 0.00 33.75 3.69
22 23 4.202284 TGCTATACGGTTTTACCCAGGATC 60.202 45.833 0.00 0.00 33.75 3.36
23 24 3.712733 TGCTATACGGTTTTACCCAGGAT 59.287 43.478 0.00 0.00 33.75 3.24
24 25 3.106054 TGCTATACGGTTTTACCCAGGA 58.894 45.455 0.00 0.00 33.75 3.86
25 26 3.200483 GTGCTATACGGTTTTACCCAGG 58.800 50.000 0.00 0.00 33.75 4.45
26 27 3.118519 AGGTGCTATACGGTTTTACCCAG 60.119 47.826 0.00 0.00 33.75 4.45
27 28 2.839425 AGGTGCTATACGGTTTTACCCA 59.161 45.455 0.00 0.00 33.75 4.51
28 29 3.461061 GAGGTGCTATACGGTTTTACCC 58.539 50.000 0.00 0.00 33.75 3.69
29 30 3.133542 AGGAGGTGCTATACGGTTTTACC 59.866 47.826 0.00 0.00 34.05 2.85
30 31 4.117685 CAGGAGGTGCTATACGGTTTTAC 58.882 47.826 0.00 0.00 0.00 2.01
31 32 3.770933 ACAGGAGGTGCTATACGGTTTTA 59.229 43.478 0.00 0.00 0.00 1.52
32 33 2.570302 ACAGGAGGTGCTATACGGTTTT 59.430 45.455 0.00 0.00 0.00 2.43
33 34 2.185387 ACAGGAGGTGCTATACGGTTT 58.815 47.619 0.00 0.00 0.00 3.27
34 35 1.861982 ACAGGAGGTGCTATACGGTT 58.138 50.000 0.00 0.00 0.00 4.44
35 36 1.480954 CAACAGGAGGTGCTATACGGT 59.519 52.381 0.00 0.00 0.00 4.83
36 37 1.480954 ACAACAGGAGGTGCTATACGG 59.519 52.381 0.00 0.00 0.00 4.02
37 38 2.540515 CACAACAGGAGGTGCTATACG 58.459 52.381 0.00 0.00 0.00 3.06
44 45 0.820891 AGCAAGCACAACAGGAGGTG 60.821 55.000 0.00 0.00 38.05 4.00
45 46 0.536006 GAGCAAGCACAACAGGAGGT 60.536 55.000 0.00 0.00 0.00 3.85
46 47 0.250640 AGAGCAAGCACAACAGGAGG 60.251 55.000 0.00 0.00 0.00 4.30
47 48 1.534595 GAAGAGCAAGCACAACAGGAG 59.465 52.381 0.00 0.00 0.00 3.69
48 49 1.597742 GAAGAGCAAGCACAACAGGA 58.402 50.000 0.00 0.00 0.00 3.86
49 50 0.236711 CGAAGAGCAAGCACAACAGG 59.763 55.000 0.00 0.00 0.00 4.00
50 51 0.940126 ACGAAGAGCAAGCACAACAG 59.060 50.000 0.00 0.00 0.00 3.16
51 52 0.657312 CACGAAGAGCAAGCACAACA 59.343 50.000 0.00 0.00 0.00 3.33
52 53 0.658536 GCACGAAGAGCAAGCACAAC 60.659 55.000 0.00 0.00 45.32 3.32
53 54 1.648720 GCACGAAGAGCAAGCACAA 59.351 52.632 0.00 0.00 45.32 3.33
54 55 3.333414 GCACGAAGAGCAAGCACA 58.667 55.556 0.00 0.00 45.32 4.57
61 62 1.648467 GGGTCATTGGCACGAAGAGC 61.648 60.000 0.00 0.00 45.24 4.09
62 63 0.036010 AGGGTCATTGGCACGAAGAG 60.036 55.000 0.00 0.00 0.00 2.85
63 64 1.207089 CTAGGGTCATTGGCACGAAGA 59.793 52.381 0.00 0.00 0.00 2.87
64 65 1.656652 CTAGGGTCATTGGCACGAAG 58.343 55.000 0.00 0.00 0.00 3.79
65 66 0.392461 GCTAGGGTCATTGGCACGAA 60.392 55.000 0.00 0.00 0.00 3.85
66 67 1.220749 GCTAGGGTCATTGGCACGA 59.779 57.895 0.00 0.00 0.00 4.35
67 68 1.819632 GGCTAGGGTCATTGGCACG 60.820 63.158 0.00 0.00 0.00 5.34
68 69 1.819632 CGGCTAGGGTCATTGGCAC 60.820 63.158 0.00 0.00 0.00 5.01
69 70 1.558167 TTCGGCTAGGGTCATTGGCA 61.558 55.000 0.00 0.00 0.00 4.92
70 71 1.095807 GTTCGGCTAGGGTCATTGGC 61.096 60.000 0.00 0.00 0.00 4.52
71 72 0.463833 GGTTCGGCTAGGGTCATTGG 60.464 60.000 0.00 0.00 0.00 3.16
72 73 0.251916 TGGTTCGGCTAGGGTCATTG 59.748 55.000 0.00 0.00 0.00 2.82
73 74 0.541863 CTGGTTCGGCTAGGGTCATT 59.458 55.000 0.00 0.00 0.00 2.57
74 75 0.617820 ACTGGTTCGGCTAGGGTCAT 60.618 55.000 0.00 0.00 0.00 3.06
75 76 0.040058 TACTGGTTCGGCTAGGGTCA 59.960 55.000 0.00 0.00 0.00 4.02
76 77 1.188863 TTACTGGTTCGGCTAGGGTC 58.811 55.000 0.00 0.00 0.00 4.46
77 78 1.553704 CTTTACTGGTTCGGCTAGGGT 59.446 52.381 0.00 0.00 0.00 4.34
78 79 1.134491 CCTTTACTGGTTCGGCTAGGG 60.134 57.143 0.00 0.00 0.00 3.53
79 80 1.134491 CCCTTTACTGGTTCGGCTAGG 60.134 57.143 0.00 0.00 0.00 3.02
80 81 1.134491 CCCCTTTACTGGTTCGGCTAG 60.134 57.143 0.00 0.00 0.00 3.42
81 82 0.906775 CCCCTTTACTGGTTCGGCTA 59.093 55.000 0.00 0.00 0.00 3.93
82 83 1.683441 CCCCTTTACTGGTTCGGCT 59.317 57.895 0.00 0.00 0.00 5.52
83 84 2.044555 GCCCCTTTACTGGTTCGGC 61.045 63.158 0.00 0.00 0.00 5.54
84 85 0.250989 TTGCCCCTTTACTGGTTCGG 60.251 55.000 0.00 0.00 0.00 4.30
85 86 0.879090 GTTGCCCCTTTACTGGTTCG 59.121 55.000 0.00 0.00 0.00 3.95
86 87 1.254026 GGTTGCCCCTTTACTGGTTC 58.746 55.000 0.00 0.00 0.00 3.62
87 88 3.450282 GGTTGCCCCTTTACTGGTT 57.550 52.632 0.00 0.00 0.00 3.67
101 102 0.250467 CGATCTATGGGGCAGGGTTG 60.250 60.000 0.00 0.00 0.00 3.77
102 103 2.056906 GCGATCTATGGGGCAGGGTT 62.057 60.000 0.00 0.00 0.00 4.11
103 104 2.520536 GCGATCTATGGGGCAGGGT 61.521 63.158 0.00 0.00 0.00 4.34
104 105 2.348998 GCGATCTATGGGGCAGGG 59.651 66.667 0.00 0.00 0.00 4.45
105 106 2.348998 GGCGATCTATGGGGCAGG 59.651 66.667 0.00 0.00 0.00 4.85
106 107 2.047844 CGGCGATCTATGGGGCAG 60.048 66.667 0.00 0.00 0.00 4.85
107 108 3.625897 CCGGCGATCTATGGGGCA 61.626 66.667 9.30 0.00 0.00 5.36
109 110 3.302347 GAGCCGGCGATCTATGGGG 62.302 68.421 23.20 0.00 0.00 4.96
110 111 2.262915 GAGCCGGCGATCTATGGG 59.737 66.667 23.20 0.00 0.00 4.00
111 112 2.262915 GGAGCCGGCGATCTATGG 59.737 66.667 23.20 0.00 0.00 2.74
112 113 1.373497 GTGGAGCCGGCGATCTATG 60.373 63.158 23.20 0.00 0.00 2.23
113 114 1.832608 TGTGGAGCCGGCGATCTAT 60.833 57.895 23.20 0.68 0.00 1.98
114 115 2.441348 TGTGGAGCCGGCGATCTA 60.441 61.111 23.20 9.53 0.00 1.98
115 116 4.148825 GTGTGGAGCCGGCGATCT 62.149 66.667 23.20 2.15 0.00 2.75
123 124 0.392998 ATGATTGTCGGTGTGGAGCC 60.393 55.000 0.00 0.00 0.00 4.70
124 125 1.009829 GATGATTGTCGGTGTGGAGC 58.990 55.000 0.00 0.00 0.00 4.70
125 126 1.208052 AGGATGATTGTCGGTGTGGAG 59.792 52.381 0.00 0.00 0.00 3.86
126 127 1.275666 AGGATGATTGTCGGTGTGGA 58.724 50.000 0.00 0.00 0.00 4.02
127 128 2.093711 TGTAGGATGATTGTCGGTGTGG 60.094 50.000 0.00 0.00 0.00 4.17
128 129 3.190079 CTGTAGGATGATTGTCGGTGTG 58.810 50.000 0.00 0.00 0.00 3.82
129 130 2.832129 ACTGTAGGATGATTGTCGGTGT 59.168 45.455 0.00 0.00 0.00 4.16
130 131 3.526931 ACTGTAGGATGATTGTCGGTG 57.473 47.619 0.00 0.00 0.00 4.94
131 132 6.516860 GCTTATACTGTAGGATGATTGTCGGT 60.517 42.308 0.00 0.00 0.00 4.69
132 133 5.864474 GCTTATACTGTAGGATGATTGTCGG 59.136 44.000 0.00 0.00 0.00 4.79
133 134 5.864474 GGCTTATACTGTAGGATGATTGTCG 59.136 44.000 0.00 0.00 0.00 4.35
134 135 6.759272 TGGCTTATACTGTAGGATGATTGTC 58.241 40.000 0.00 0.00 0.00 3.18
135 136 6.747414 TGGCTTATACTGTAGGATGATTGT 57.253 37.500 0.00 0.00 0.00 2.71
154 155 7.613411 GCTGGGAAGATCTTTAATTATATGGCT 59.387 37.037 9.87 0.00 0.00 4.75
170 171 3.745797 GCCTCGATAAAAGCTGGGAAGAT 60.746 47.826 0.00 0.00 0.00 2.40
171 172 2.420129 GCCTCGATAAAAGCTGGGAAGA 60.420 50.000 0.00 0.00 0.00 2.87
172 173 1.943340 GCCTCGATAAAAGCTGGGAAG 59.057 52.381 0.00 0.00 0.00 3.46
175 176 0.819666 GGGCCTCGATAAAAGCTGGG 60.820 60.000 0.84 0.00 0.00 4.45
177 178 2.365617 TCTAGGGCCTCGATAAAAGCTG 59.634 50.000 10.74 0.00 0.00 4.24
178 179 2.630580 CTCTAGGGCCTCGATAAAAGCT 59.369 50.000 10.74 0.00 0.00 3.74
179 180 2.365941 ACTCTAGGGCCTCGATAAAAGC 59.634 50.000 10.74 0.00 0.00 3.51
180 181 4.141914 ACAACTCTAGGGCCTCGATAAAAG 60.142 45.833 10.74 0.00 0.00 2.27
181 182 3.773119 ACAACTCTAGGGCCTCGATAAAA 59.227 43.478 10.74 0.00 0.00 1.52
182 183 3.371965 ACAACTCTAGGGCCTCGATAAA 58.628 45.455 10.74 0.00 0.00 1.40
187 188 2.054232 TAGACAACTCTAGGGCCTCG 57.946 55.000 10.74 3.10 0.00 4.63
191 192 5.463724 CGAATCATTTAGACAACTCTAGGGC 59.536 44.000 0.00 0.00 30.31 5.19
210 211 4.212214 GGTCATCTCATTTAGTGCCGAATC 59.788 45.833 0.00 0.00 0.00 2.52
214 215 2.213499 GGGTCATCTCATTTAGTGCCG 58.787 52.381 0.00 0.00 0.00 5.69
217 218 3.116300 CGTCGGGTCATCTCATTTAGTG 58.884 50.000 0.00 0.00 0.00 2.74
218 219 2.758979 ACGTCGGGTCATCTCATTTAGT 59.241 45.455 0.00 0.00 0.00 2.24
220 221 3.880047 AACGTCGGGTCATCTCATTTA 57.120 42.857 0.00 0.00 0.00 1.40
236 237 1.202758 TGGCATCTGGTTCTGAAACGT 60.203 47.619 0.36 0.00 36.16 3.99
242 243 4.730949 AATCAAATGGCATCTGGTTCTG 57.269 40.909 0.00 0.00 0.00 3.02
249 250 4.801164 AGCCTCTAAATCAAATGGCATCT 58.199 39.130 0.00 0.00 42.46 2.90
282 283 6.426980 TTGTTCATGATTTCAAGGATCTCG 57.573 37.500 0.00 0.00 0.00 4.04
291 292 8.412456 TCTTTTGTAGCTTTGTTCATGATTTCA 58.588 29.630 0.00 0.00 0.00 2.69
292 293 8.801715 TCTTTTGTAGCTTTGTTCATGATTTC 57.198 30.769 0.00 0.00 0.00 2.17
299 300 7.598493 GGCAATAATCTTTTGTAGCTTTGTTCA 59.402 33.333 0.00 0.00 0.00 3.18
318 319 4.638421 CCGTTCATTAGTGGAAGGCAATAA 59.362 41.667 0.00 0.00 0.00 1.40
321 322 2.224670 ACCGTTCATTAGTGGAAGGCAA 60.225 45.455 0.00 0.00 0.00 4.52
326 329 2.851263 AGCACCGTTCATTAGTGGAA 57.149 45.000 0.00 0.00 32.05 3.53
340 343 8.921670 CAATTAACAAAATACTTGGTTAGCACC 58.078 33.333 0.00 0.00 44.56 5.01
352 355 9.535878 TTGAGTTGAACCCAATTAACAAAATAC 57.464 29.630 0.00 0.00 34.39 1.89
389 392 4.782252 ACGTACGCGCACATAAAAATAT 57.218 36.364 16.72 0.00 42.83 1.28
391 394 4.570935 CTTACGTACGCGCACATAAAAAT 58.429 39.130 16.72 0.00 42.83 1.82
404 407 4.521010 TCAATCGTAGATGCTTACGTACG 58.479 43.478 15.01 15.01 44.95 3.67
408 411 6.347881 GTCAATTCAATCGTAGATGCTTACG 58.652 40.000 8.91 8.91 45.12 3.18
414 417 3.494626 CGGGGTCAATTCAATCGTAGATG 59.505 47.826 0.00 0.00 45.12 2.90
419 422 2.710096 ATCGGGGTCAATTCAATCGT 57.290 45.000 0.00 0.00 0.00 3.73
435 438 4.169508 CGGCTGAGATGGTATTAGAATCG 58.830 47.826 0.00 0.00 0.00 3.34
449 456 1.550130 CCCCTTGGTTACGGCTGAGA 61.550 60.000 0.00 0.00 0.00 3.27
452 459 2.750237 GCCCCTTGGTTACGGCTG 60.750 66.667 0.00 0.00 38.41 4.85
453 460 4.404098 CGCCCCTTGGTTACGGCT 62.404 66.667 0.00 0.00 39.34 5.52
455 462 1.153509 CTACGCCCCTTGGTTACGG 60.154 63.158 0.00 0.00 0.00 4.02
457 464 2.285977 CATTCTACGCCCCTTGGTTAC 58.714 52.381 0.00 0.00 0.00 2.50
458 465 1.407712 GCATTCTACGCCCCTTGGTTA 60.408 52.381 0.00 0.00 0.00 2.85
461 468 1.823899 GGCATTCTACGCCCCTTGG 60.824 63.158 0.00 0.00 44.22 3.61
462 469 3.827634 GGCATTCTACGCCCCTTG 58.172 61.111 0.00 0.00 44.22 3.61
468 475 1.737236 TGTCATGTTGGCATTCTACGC 59.263 47.619 0.00 0.00 31.99 4.42
469 476 4.418013 TTTGTCATGTTGGCATTCTACG 57.582 40.909 0.00 0.00 29.04 3.51
470 477 5.713025 ACATTTGTCATGTTGGCATTCTAC 58.287 37.500 0.00 0.00 29.04 2.59
483 490 6.072563 GGCCTTTTTGCATTTACATTTGTCAT 60.073 34.615 0.00 0.00 0.00 3.06
484 491 5.238214 GGCCTTTTTGCATTTACATTTGTCA 59.762 36.000 0.00 0.00 0.00 3.58
496 503 2.027837 GTCATTCCAGGCCTTTTTGCAT 60.028 45.455 0.00 0.00 0.00 3.96
499 506 3.392882 GTTGTCATTCCAGGCCTTTTTG 58.607 45.455 0.00 0.00 0.00 2.44
510 518 9.687210 TTACTATATATGTCACGTTGTCATTCC 57.313 33.333 0.00 0.00 29.55 3.01
533 541 8.331730 TCAAACATAGGCCTTTTTCTACTTAC 57.668 34.615 12.58 0.00 0.00 2.34
575 583 7.973944 GGATGACAACATAGGAAAACCATTAAC 59.026 37.037 0.00 0.00 36.82 2.01
586 595 7.993183 GGATAAGAAAAGGATGACAACATAGGA 59.007 37.037 0.00 0.00 36.82 2.94
623 635 3.628008 ACGTATCTAGACCCACATGTGA 58.372 45.455 27.46 5.46 0.00 3.58
653 665 3.845781 TCTCTCCTGGATAACAATGCC 57.154 47.619 0.00 0.00 0.00 4.40
755 774 2.049767 CCCCGTTTCCATTTCCCGG 61.050 63.158 0.00 0.00 38.39 5.73
938 980 1.800655 CGTCGATCTGCTTTCTCTGGG 60.801 57.143 0.00 0.00 0.00 4.45
964 1006 2.894565 CTACCTACCGAGCTCGCCG 61.895 68.421 30.49 19.85 38.18 6.46
2239 2287 3.154473 TTGATCGGAGGCGGAGGG 61.154 66.667 0.00 0.00 0.00 4.30
2245 2293 2.467826 GCTGCTGTTGATCGGAGGC 61.468 63.158 0.00 0.00 0.00 4.70
2275 2323 1.622312 TGGAGCTAGCTGGCTATCATG 59.378 52.381 25.87 0.00 43.20 3.07
2276 2324 2.021262 TGGAGCTAGCTGGCTATCAT 57.979 50.000 25.87 1.77 43.20 2.45
2277 2325 1.622312 CATGGAGCTAGCTGGCTATCA 59.378 52.381 25.87 24.13 43.20 2.15
2278 2326 1.622811 ACATGGAGCTAGCTGGCTATC 59.377 52.381 25.87 19.48 43.20 2.08
2279 2327 1.727062 ACATGGAGCTAGCTGGCTAT 58.273 50.000 25.87 13.14 43.20 2.97
2280 2328 1.500474 AACATGGAGCTAGCTGGCTA 58.500 50.000 25.87 11.11 43.20 3.93
2281 2329 1.139853 GTAACATGGAGCTAGCTGGCT 59.860 52.381 26.12 26.12 46.11 4.75
2282 2330 1.139853 AGTAACATGGAGCTAGCTGGC 59.860 52.381 24.99 15.23 0.00 4.85
2283 2331 3.384789 TGTAGTAACATGGAGCTAGCTGG 59.615 47.826 24.99 11.19 0.00 4.85
2284 2332 4.655762 TGTAGTAACATGGAGCTAGCTG 57.344 45.455 24.99 11.34 0.00 4.24
2325 2375 2.616960 ACAACGAATCTCTTGCGCATA 58.383 42.857 12.75 0.92 0.00 3.14
2326 2376 1.442769 ACAACGAATCTCTTGCGCAT 58.557 45.000 12.75 0.00 0.00 4.73
2445 2496 8.732413 TTGATTCATTCATTTTTCTCAACGAG 57.268 30.769 0.00 0.00 33.34 4.18
2484 2596 1.004440 GCTGCCGAACTCCAAGACT 60.004 57.895 0.00 0.00 0.00 3.24
2496 2608 2.176273 CCTCCATTTCGAGCTGCCG 61.176 63.158 0.00 0.00 0.00 5.69
2512 2624 2.835764 AGAACAATCCAAATGCATGCCT 59.164 40.909 16.68 1.31 0.00 4.75
2572 2693 2.857748 CTGTTCTTCGTTTTTGGTTGGC 59.142 45.455 0.00 0.00 0.00 4.52
2634 2762 0.884259 CCACGTGCTCATCACACCAA 60.884 55.000 10.91 0.00 45.92 3.67
2636 2764 0.391661 ATCCACGTGCTCATCACACC 60.392 55.000 10.91 0.00 45.92 4.16
2638 2766 0.391528 CCATCCACGTGCTCATCACA 60.392 55.000 10.91 0.00 45.92 3.58
2639 2767 1.091771 CCCATCCACGTGCTCATCAC 61.092 60.000 10.91 0.00 42.23 3.06
2640 2768 1.221566 CCCATCCACGTGCTCATCA 59.778 57.895 10.91 0.00 0.00 3.07
2667 2796 2.235898 CCCTTTCTCTTCTCCTGGACAG 59.764 54.545 0.00 0.00 0.00 3.51
2705 2834 2.239812 CGTCGCATCGCATGGACAT 61.240 57.895 0.00 0.00 33.11 3.06
2722 2851 5.848036 CAGAAATGAAAGAACAGTACTTGCG 59.152 40.000 0.00 0.00 0.00 4.85
2764 2893 4.082679 CGCACTTACTTCTTCTCAGTACCT 60.083 45.833 0.00 0.00 0.00 3.08
2765 2894 4.167268 CGCACTTACTTCTTCTCAGTACC 58.833 47.826 0.00 0.00 0.00 3.34
2766 2895 4.796369 ACGCACTTACTTCTTCTCAGTAC 58.204 43.478 0.00 0.00 0.00 2.73
2767 2896 4.082895 GGACGCACTTACTTCTTCTCAGTA 60.083 45.833 0.00 0.00 0.00 2.74
2777 2906 1.183676 AGGGACGGACGCACTTACTT 61.184 55.000 0.00 0.00 0.00 2.24
2778 2907 1.605738 AGGGACGGACGCACTTACT 60.606 57.895 0.00 0.00 0.00 2.24
2779 2908 1.445582 CAGGGACGGACGCACTTAC 60.446 63.158 0.00 0.00 0.00 2.34
2780 2909 1.904865 ACAGGGACGGACGCACTTA 60.905 57.895 0.00 0.00 0.00 2.24
2800 2929 2.027377 AGTGGCAATCTCTGTCCTTCAG 60.027 50.000 0.00 0.00 44.85 3.02
2867 3000 5.585820 ACCGTTGTGTTTTTGGTCTTTAT 57.414 34.783 0.00 0.00 0.00 1.40
2868 3001 6.506500 TTACCGTTGTGTTTTTGGTCTTTA 57.493 33.333 0.00 0.00 34.18 1.85
2869 3002 3.945981 ACCGTTGTGTTTTTGGTCTTT 57.054 38.095 0.00 0.00 0.00 2.52
2870 3003 5.105675 ACATTACCGTTGTGTTTTTGGTCTT 60.106 36.000 0.00 0.00 34.18 3.01
2871 3004 4.399934 ACATTACCGTTGTGTTTTTGGTCT 59.600 37.500 0.00 0.00 34.18 3.85
2872 3005 4.674475 ACATTACCGTTGTGTTTTTGGTC 58.326 39.130 0.00 0.00 34.18 4.02
2873 3006 4.722361 ACATTACCGTTGTGTTTTTGGT 57.278 36.364 0.00 0.00 36.72 3.67
2874 3007 7.701809 AATAACATTACCGTTGTGTTTTTGG 57.298 32.000 6.55 0.00 37.30 3.28
2880 3013 4.614078 CGCCAAATAACATTACCGTTGTGT 60.614 41.667 0.00 0.00 0.00 3.72
2889 3022 5.636837 GCTGACTTTCGCCAAATAACATTA 58.363 37.500 0.00 0.00 0.00 1.90
2898 3031 2.668212 CCCGCTGACTTTCGCCAA 60.668 61.111 0.00 0.00 0.00 4.52
2904 3037 2.757077 CCCTTCCCCGCTGACTTT 59.243 61.111 0.00 0.00 0.00 2.66
2913 3046 2.931649 TTCGTCACCCCCTTCCCC 60.932 66.667 0.00 0.00 0.00 4.81
2915 3048 2.047560 CGTTCGTCACCCCCTTCC 60.048 66.667 0.00 0.00 0.00 3.46
2923 3056 0.233848 AAAATGCGTCCGTTCGTCAC 59.766 50.000 0.00 0.00 0.00 3.67
2924 3057 0.509499 GAAAATGCGTCCGTTCGTCA 59.491 50.000 0.00 0.00 0.00 4.35
2926 3059 0.601841 AGGAAAATGCGTCCGTTCGT 60.602 50.000 0.00 0.00 40.36 3.85
2927 3060 0.179225 CAGGAAAATGCGTCCGTTCG 60.179 55.000 0.00 0.00 40.36 3.95
2928 3061 0.454452 GCAGGAAAATGCGTCCGTTC 60.454 55.000 0.00 0.00 40.36 3.95
2930 3063 3.263941 GCAGGAAAATGCGTCCGT 58.736 55.556 0.00 0.00 40.36 4.69
2947 3080 1.058695 CCGCGTCGCAACTAAAACTAG 59.941 52.381 18.75 0.00 0.00 2.57
2948 3081 1.062258 CCGCGTCGCAACTAAAACTA 58.938 50.000 18.75 0.00 0.00 2.24
2951 3084 0.671163 ATCCCGCGTCGCAACTAAAA 60.671 50.000 18.75 0.00 0.00 1.52
2952 3085 1.079681 ATCCCGCGTCGCAACTAAA 60.080 52.632 18.75 0.00 0.00 1.85
2953 3086 1.517694 GATCCCGCGTCGCAACTAA 60.518 57.895 18.75 0.00 0.00 2.24
2954 3087 2.103538 GATCCCGCGTCGCAACTA 59.896 61.111 18.75 0.00 0.00 2.24
2955 3088 3.583276 TTGATCCCGCGTCGCAACT 62.583 57.895 18.75 0.00 0.00 3.16
2956 3089 2.673114 TTTGATCCCGCGTCGCAAC 61.673 57.895 18.75 3.81 0.00 4.17
2962 3095 2.740826 CACCGTTTGATCCCGCGT 60.741 61.111 4.92 0.00 0.00 6.01
2963 3096 3.496131 CCACCGTTTGATCCCGCG 61.496 66.667 0.00 0.00 0.00 6.46
2967 3100 0.958822 AACTTGCCACCGTTTGATCC 59.041 50.000 0.00 0.00 0.00 3.36
2983 3116 5.915175 AGAAAGACACGTTCCTTCTAAACT 58.085 37.500 8.78 0.00 0.00 2.66
2984 3117 5.107951 CGAGAAAGACACGTTCCTTCTAAAC 60.108 44.000 9.90 1.75 0.00 2.01
2992 3125 0.316204 TCCCGAGAAAGACACGTTCC 59.684 55.000 0.00 0.00 0.00 3.62
2993 3126 1.268899 TCTCCCGAGAAAGACACGTTC 59.731 52.381 0.00 0.00 33.91 3.95
2996 3129 1.983972 CTTCTCCCGAGAAAGACACG 58.016 55.000 8.43 0.00 45.75 4.49
2997 3130 1.273886 AGCTTCTCCCGAGAAAGACAC 59.726 52.381 8.43 0.00 45.75 3.67
3001 3134 0.742635 GGCAGCTTCTCCCGAGAAAG 60.743 60.000 8.43 4.62 45.75 2.62
3002 3135 1.296715 GGCAGCTTCTCCCGAGAAA 59.703 57.895 8.43 0.00 45.75 2.52
3005 3138 1.523258 CATGGCAGCTTCTCCCGAG 60.523 63.158 0.00 0.00 0.00 4.63
3007 3140 3.207669 GCATGGCAGCTTCTCCCG 61.208 66.667 0.00 0.00 0.00 5.14
3008 3141 2.119655 CAGCATGGCAGCTTCTCCC 61.120 63.158 8.43 0.00 43.70 4.30
3009 3142 0.964358 AACAGCATGGCAGCTTCTCC 60.964 55.000 8.43 0.00 43.70 3.71
3015 3152 2.019249 TCTTCATAACAGCATGGCAGC 58.981 47.619 0.00 0.00 43.62 5.25
3019 3156 4.418392 GCAGTTTCTTCATAACAGCATGG 58.582 43.478 0.00 0.00 43.62 3.66
3024 3161 4.321230 GGGTTGGCAGTTTCTTCATAACAG 60.321 45.833 0.00 0.00 0.00 3.16
3029 3166 2.683211 AGGGTTGGCAGTTTCTTCAT 57.317 45.000 0.00 0.00 0.00 2.57
3034 3171 3.442625 GGTGTATAAGGGTTGGCAGTTTC 59.557 47.826 0.00 0.00 0.00 2.78
3041 3178 4.637091 CGGTTTTAGGTGTATAAGGGTTGG 59.363 45.833 0.00 0.00 0.00 3.77
3050 3187 9.895138 ACATTTAGATAACGGTTTTAGGTGTAT 57.105 29.630 0.00 0.00 0.00 2.29
3058 3195 6.243811 TGCGAACATTTAGATAACGGTTTT 57.756 33.333 0.00 0.00 0.00 2.43
3064 3201 6.033341 TGGCATTTGCGAACATTTAGATAAC 58.967 36.000 0.00 0.00 43.26 1.89
3065 3202 6.201226 TGGCATTTGCGAACATTTAGATAA 57.799 33.333 0.00 0.00 43.26 1.75
3066 3203 5.826601 TGGCATTTGCGAACATTTAGATA 57.173 34.783 0.00 0.00 43.26 1.98
3078 3215 2.573340 GAGGGGTTGGCATTTGCG 59.427 61.111 0.00 0.00 43.26 4.85
3101 3238 2.737252 CCTCTTAACTGGCGAACTGTTC 59.263 50.000 10.48 10.48 40.96 3.18
3102 3239 2.550208 CCCTCTTAACTGGCGAACTGTT 60.550 50.000 0.00 0.00 42.81 3.16
3103 3240 1.002087 CCCTCTTAACTGGCGAACTGT 59.998 52.381 0.00 0.00 0.00 3.55
3104 3241 1.002087 ACCCTCTTAACTGGCGAACTG 59.998 52.381 0.00 0.00 0.00 3.16
3124 3263 5.312178 TCCTCATCCTCTTTTACCTTTTGGA 59.688 40.000 0.00 0.00 44.07 3.53
3131 3270 3.370633 GGTGGTCCTCATCCTCTTTTACC 60.371 52.174 0.00 0.00 0.00 2.85
3137 3276 0.415429 ACAGGTGGTCCTCATCCTCT 59.585 55.000 0.00 0.00 43.07 3.69
3138 3277 0.827368 GACAGGTGGTCCTCATCCTC 59.173 60.000 0.00 0.00 43.07 3.71
3139 3278 0.117140 TGACAGGTGGTCCTCATCCT 59.883 55.000 0.00 0.00 46.38 3.24
3140 3279 0.539051 CTGACAGGTGGTCCTCATCC 59.461 60.000 0.00 0.00 46.38 3.51
3142 3281 1.557269 GGCTGACAGGTGGTCCTCAT 61.557 60.000 4.26 0.00 46.38 2.90
3143 3282 2.217038 GGCTGACAGGTGGTCCTCA 61.217 63.158 4.26 0.00 46.38 3.86
3144 3283 2.665603 GGCTGACAGGTGGTCCTC 59.334 66.667 4.26 0.00 46.38 3.71
3145 3284 2.930562 GGGCTGACAGGTGGTCCT 60.931 66.667 4.26 0.00 46.38 3.85
3161 3301 4.989875 AGAGATGGGAATAAGATGGTGG 57.010 45.455 0.00 0.00 0.00 4.61
3187 3327 1.002544 GACAAGGTGGGGAGTGAGAAG 59.997 57.143 0.00 0.00 0.00 2.85
3188 3328 1.056660 GACAAGGTGGGGAGTGAGAA 58.943 55.000 0.00 0.00 0.00 2.87
3189 3329 0.836400 GGACAAGGTGGGGAGTGAGA 60.836 60.000 0.00 0.00 0.00 3.27
3192 3332 1.073199 GTGGACAAGGTGGGGAGTG 59.927 63.158 0.00 0.00 0.00 3.51
3211 3351 3.182572 GTCGATGCGGATAACTTGCTTAG 59.817 47.826 0.00 0.00 0.00 2.18
3212 3352 3.120792 GTCGATGCGGATAACTTGCTTA 58.879 45.455 0.00 0.00 0.00 3.09
3213 3353 1.933853 GTCGATGCGGATAACTTGCTT 59.066 47.619 0.00 0.00 0.00 3.91
3219 3359 0.512952 GCCATGTCGATGCGGATAAC 59.487 55.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.